AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1292140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1292140 MtrunA17_Chr8g0366891 100.000 132 0 0 1 132 1 132 2.15e-94 268
Msa1292140 MtrunA17_Chr5g0411511 63.934 122 38 4 1 117 4 124 6.41e-40 130
Msa1292140 MtrunA17_Chr5g0428121 34.400 125 66 3 1 116 1 118 3.78e-13 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1292140 AT5G65660.1 59.559 136 50 3 1 131 1 136 7.69e-50 155

Find 59 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTATTCAATCCTTGTGTTT+TGG 0.246615 8_3:-48171147 Msa1292140:three_prime_UTR
ATATATTAAAGAGATCTTAA+TGG 0.274919 8_3:-48171110 Msa1292140:three_prime_UTR
GAGTATGGAAATGGAAAATT+TGG 0.282648 8_3:+48172289 None:intergenic
CCGTCCCTTGGTTTCCCTTT+GGG 0.294498 8_3:-48172049 Msa1292140:CDS
GGGAAGGAAAGAATCACTTT+TGG 0.330053 8_3:+48172202 None:intergenic
ACCGTCCCTTGGTTTCCCTT+TGG 0.330496 8_3:-48172050 Msa1292140:CDS
TCCTCTCTTGTTGCTACCAT+TGG 0.336730 8_3:-48171985 Msa1292140:CDS
ATTAGGAATTGAAGCAAAAC+AGG 0.353891 8_3:-48171589 Msa1292140:intron
CTCTTACACTCATGTGTTTG+AGG 0.371224 8_3:+48172160 None:intergenic
TGAGGTATTTATATAGAGTA+TGG 0.382660 8_3:+48172274 None:intergenic
AAATGAATAGGTTAGGTAGA+AGG 0.409878 8_3:-48171202 Msa1292140:three_prime_UTR
CCAAAACACAAGGATTGAAT+AGG 0.415934 8_3:+48171147 None:intergenic
CCTCTCTTGTTGCTACCATT+GGG 0.420887 8_3:-48171984 Msa1292140:CDS
CATGGCATCGCTATGAACTT+TGG 0.435341 8_3:+48171527 None:intergenic
ATTTATATAGAGTATGGAAA+TGG 0.452632 8_3:+48172280 None:intergenic
TGTGTTTGTGTAGGTGGTGA+TGG 0.470611 8_3:+48172251 None:intergenic
CTCAAACACATGAGTGTAAG+AGG 0.472452 8_3:-48172159 Msa1292140:five_prime_UTR
TGCGGTGGCTTTAGCGGTGG+CGG 0.472991 8_3:+48171452 None:intergenic
TTATTTGATGAATGACTTTG+AGG 0.473837 8_3:+48171920 None:intergenic
ATTTACAAATACAAAGGAAT+CGG 0.482953 8_3:+48171425 None:intergenic
TATTTGATGAATGACTTTGA+GGG 0.484211 8_3:+48171921 None:intergenic
AATGTGTGTGTTTGTGTAGG+TGG 0.487968 8_3:+48172245 None:intergenic
AGAGAAGGGCAGTGCCCAAA+GGG 0.494638 8_3:+48172035 None:intergenic
GGTAGTTGCGGTGGCTTTAG+CGG 0.501118 8_3:+48171446 None:intergenic
GGGAAGGTGTAAGATGATCT+TGG 0.514506 8_3:+48172089 None:intergenic
GGTGGCTTTAGCGGTGGCGG+CGG 0.535647 8_3:+48171455 None:intergenic
TTGAATAGGATGAAATGTAA+TGG 0.536402 8_3:+48171161 None:intergenic
AACTTTGGCACATCATCCCC+TGG 0.540201 8_3:+48171542 None:intergenic
GATGCATCTAGACCGTCCCT+TGG 0.550142 8_3:-48172061 Msa1292140:CDS
GAACACAAAGAAGGAAGGAA+GGG 0.560828 8_3:+48172182 None:intergenic
GGAACACAAAGAAGGAAGGA+AGG 0.565051 8_3:+48172181 None:intergenic
TTGTGTAGGTGGTGATGGTG+AGG 0.580780 8_3:+48172256 None:intergenic
ACAAAGAAGGAAGGAAGGGA+AGG 0.581550 8_3:+48172186 None:intergenic
GTGTTTGAGGAACACAAAGA+AGG 0.581852 8_3:+48172173 None:intergenic
GATACAATGATACAACAAAA+CGG 0.582853 8_3:+48171358 None:intergenic
TATAATGTGTGTGTTTGTGT+AGG 0.583252 8_3:+48172242 None:intergenic
TACAAAGGAATCGGTAGTTG+CGG 0.587455 8_3:+48171434 None:intergenic
CAGTGCCCAAAGGGAAACCA+AGG 0.587464 8_3:+48172044 None:intergenic
CTAATTATTTACAAATACAA+AGG 0.591127 8_3:+48171419 None:intergenic
CGTGATGGTTGACACGGACA+TGG 0.592416 8_3:+48171509 None:intergenic
CTAGATGCATCCACGTGGGA+AGG 0.595090 8_3:+48172073 None:intergenic
TCCGTGTCAACCATCACGGC+CGG 0.605730 8_3:-48171504 Msa1292140:CDS
TCCGGCCGTGATGGTTGACA+CGG 0.606741 8_3:+48171503 None:intergenic
AAAGGAATCGGTAGTTGCGG+TGG 0.608462 8_3:+48171437 None:intergenic
AGGAACGAACTTTGTCCCAA+TGG 0.612669 8_3:+48171969 None:intergenic
AGTTGCGGTGGCTTTAGCGG+TGG 0.620561 8_3:+48171449 None:intergenic
AAGAGAAGGGCAGTGCCCAA+AGG 0.630791 8_3:+48172034 None:intergenic
TTGAGGAACACAAAGAAGGA+AGG 0.638264 8_3:+48172177 None:intergenic
CATGTCCGTGTCAACCATCA+CGG 0.638623 8_3:-48171508 Msa1292140:CDS
TTAGGAATTGAAGCAAAACA+GGG 0.644352 8_3:-48171588 Msa1292140:intron
CCCAAAGGGAAACCAAGGGA+CGG 0.647076 8_3:+48172049 None:intergenic
CCCAATGGTAGCAACAAGAG+AGG 0.649699 8_3:+48171984 None:intergenic
AGTGCCCAAAGGGAAACCAA+GGG 0.663567 8_3:+48172045 None:intergenic
ACATTACATACCAAAACACA+AGG 0.682439 8_3:+48171137 None:intergenic
TCATCTTACACCTTCCCACG+TGG 0.683852 8_3:-48172083 Msa1292140:CDS
ACGGTCTAGATGCATCCACG+TGG 0.687848 8_3:+48172068 None:intergenic
CGGTCTAGATGCATCCACGT+GGG 0.718155 8_3:+48172069 None:intergenic
TAGGAATTGAAGCAAAACAG+GGG 0.736089 8_3:-48171587 Msa1292140:CDS
ACAATGATACAACAAAACGG+TGG 0.750064 8_3:+48171361 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAATTATTTACAAATACAA+AGG + chr8_3:48171920-48171939 None:intergenic 15.0%
!!! AATTGTTTTTGAGTAAAAAA+TGG - chr8_3:48172025-48172044 Msa1292140:CDS 15.0%
!! ATATATTAAAGAGATCTTAA+TGG - chr8_3:48172226-48172245 Msa1292140:five_prime_UTR 15.0%
!! CTAATTATTTACAAATACAA+AGG + chr8_3:48171920-48171939 None:intergenic 15.0%
!!! AATTGTTTTTGAGTAAAAAA+TGG - chr8_3:48172025-48172044 Msa1292140:CDS 15.0%
!! ATATATTAAAGAGATCTTAA+TGG - chr8_3:48172226-48172245 Msa1292140:five_prime_UTR 15.0%
!! ATTTATATAGAGTATGGAAA+TGG + chr8_3:48171059-48171078 None:intergenic 20.0%
!! AACTAGTGTGAAAATTAAAA+GGG + chr8_3:48171478-48171497 None:intergenic 20.0%
!! AAACTAGTGTGAAAATTAAA+AGG + chr8_3:48171479-48171498 None:intergenic 20.0%
!! AGAAAAAAGTCTAAGAATAA+TGG + chr8_3:48171508-48171527 None:intergenic 20.0%
!! ATTTACAAATACAAAGGAAT+CGG + chr8_3:48171914-48171933 None:intergenic 20.0%
!!! TATGTTTTTATCATTTTCCT+AGG - chr8_3:48172001-48172020 Msa1292140:CDS 20.0%
!! ATTTATATAGAGTATGGAAA+TGG + chr8_3:48171059-48171078 None:intergenic 20.0%
!! AACTAGTGTGAAAATTAAAA+GGG + chr8_3:48171478-48171497 None:intergenic 20.0%
!! AAACTAGTGTGAAAATTAAA+AGG + chr8_3:48171479-48171498 None:intergenic 20.0%
!! AGAAAAAAGTCTAAGAATAA+TGG + chr8_3:48171508-48171527 None:intergenic 20.0%
!! ATTTACAAATACAAAGGAAT+CGG + chr8_3:48171914-48171933 None:intergenic 20.0%
!!! TATGTTTTTATCATTTTCCT+AGG - chr8_3:48172001-48172020 Msa1292140:CDS 20.0%
!! TGAGGTATTTATATAGAGTA+TGG + chr8_3:48171065-48171084 None:intergenic 25.0%
! ACAACAAAAACAAAACACAA+TGG - chr8_3:48171220-48171239 Msa1292140:three_prime_UTR 25.0%
! AAAAATGATGATCAAGAGAA+GGG + chr8_3:48171318-48171337 None:intergenic 25.0%
! TAAAAATGATGATCAAGAGA+AGG + chr8_3:48171319-48171338 None:intergenic 25.0%
! TATTTGATGAATGACTTTGA+GGG + chr8_3:48171418-48171437 None:intergenic 25.0%
! TTATTTGATGAATGACTTTG+AGG + chr8_3:48171419-48171438 None:intergenic 25.0%
! AGGGTTATTTAATATACGTA+CGG + chr8_3:48171459-48171478 None:intergenic 25.0%
!!! TAGTTTCTAATGTTGTTTCA+TGG - chr8_3:48171720-48171739 Msa1292140:intron 25.0%
! GATACAATGATACAACAAAA+CGG + chr8_3:48171981-48172000 None:intergenic 25.0%
! TTACTCAAAAACAATTTCCT+AGG + chr8_3:48172021-48172040 None:intergenic 25.0%
!!! TGTTTTTGAGTAAAAAATGG+TGG - chr8_3:48172028-48172047 Msa1292140:CDS 25.0%
!!! CATGTTTTTTGTGAAGAAAA+TGG - chr8_3:48172054-48172073 Msa1292140:CDS 25.0%
! ATGAGCAACAAAAAATGAAT+AGG - chr8_3:48172122-48172141 Msa1292140:five_prime_UTR 25.0%
! CAACAAAAAATGAATAGGTT+AGG - chr8_3:48172127-48172146 Msa1292140:five_prime_UTR 25.0%
! TTGAATAGGATGAAATGTAA+TGG + chr8_3:48172178-48172197 None:intergenic 25.0%
!!! ATTTTAGTTTCAGCTCTAAA+TGG - chr8_3:48172256-48172275 Msa1292140:five_prime_UTR 25.0%
!! TGAGGTATTTATATAGAGTA+TGG + chr8_3:48171065-48171084 None:intergenic 25.0%
! ACAACAAAAACAAAACACAA+TGG - chr8_3:48171220-48171239 Msa1292140:three_prime_UTR 25.0%
! AAAAATGATGATCAAGAGAA+GGG + chr8_3:48171318-48171337 None:intergenic 25.0%
! TAAAAATGATGATCAAGAGA+AGG + chr8_3:48171319-48171338 None:intergenic 25.0%
! TATTTGATGAATGACTTTGA+GGG + chr8_3:48171418-48171437 None:intergenic 25.0%
! TTATTTGATGAATGACTTTG+AGG + chr8_3:48171419-48171438 None:intergenic 25.0%
! AGGGTTATTTAATATACGTA+CGG + chr8_3:48171459-48171478 None:intergenic 25.0%
!!! TAGTTTCTAATGTTGTTTCA+TGG - chr8_3:48171720-48171739 Msa1292140:intron 25.0%
! GATACAATGATACAACAAAA+CGG + chr8_3:48171981-48172000 None:intergenic 25.0%
! TTACTCAAAAACAATTTCCT+AGG + chr8_3:48172021-48172040 None:intergenic 25.0%
!!! TGTTTTTGAGTAAAAAATGG+TGG - chr8_3:48172028-48172047 Msa1292140:CDS 25.0%
!!! CATGTTTTTTGTGAAGAAAA+TGG - chr8_3:48172054-48172073 Msa1292140:CDS 25.0%
! ATGAGCAACAAAAAATGAAT+AGG - chr8_3:48172122-48172141 Msa1292140:five_prime_UTR 25.0%
! CAACAAAAAATGAATAGGTT+AGG - chr8_3:48172127-48172146 Msa1292140:five_prime_UTR 25.0%
! TTGAATAGGATGAAATGTAA+TGG + chr8_3:48172178-48172197 None:intergenic 25.0%
!!! ATTTTAGTTTCAGCTCTAAA+TGG - chr8_3:48172256-48172275 Msa1292140:five_prime_UTR 25.0%
GAGTATGGAAATGGAAAATT+TGG + chr8_3:48171050-48171069 None:intergenic 30.0%
TATAATGTGTGTGTTTGTGT+AGG + chr8_3:48171097-48171116 None:intergenic 30.0%
!!! TTTTGGAATGTGAATTTGGA+GGG + chr8_3:48171120-48171139 None:intergenic 30.0%
!!! TCACTTTTGGAATGTGAATT+TGG + chr8_3:48171124-48171143 None:intergenic 30.0%
!!! ATCATCATTTTTAGCTTGAG+TGG - chr8_3:48171326-48171345 Msa1292140:three_prime_UTR 30.0%
GTTATTTAATATACGTACGG+TGG + chr8_3:48171456-48171475 None:intergenic 30.0%
ATTAGGAATTGAAGCAAAAC+AGG - chr8_3:48171747-48171766 Msa1292140:intron 30.0%
TTAGGAATTGAAGCAAAACA+GGG - chr8_3:48171748-48171767 Msa1292140:intron 30.0%
!!! GTTTTTTGTGAAGAAAATGG+TGG - chr8_3:48172057-48172076 Msa1292140:CDS 30.0%
AAATGAATAGGTTAGGTAGA+AGG - chr8_3:48172134-48172153 Msa1292140:five_prime_UTR 30.0%
ACATTACATACCAAAACACA+AGG + chr8_3:48172202-48172221 None:intergenic 30.0%
TATGGAAATGGAAAATTTGG+AGG + chr8_3:48171047-48171066 None:intergenic 30.0%
GAGTATGGAAATGGAAAATT+TGG + chr8_3:48171050-48171069 None:intergenic 30.0%
TATAATGTGTGTGTTTGTGT+AGG + chr8_3:48171097-48171116 None:intergenic 30.0%
!!! TTTTGGAATGTGAATTTGGA+GGG + chr8_3:48171120-48171139 None:intergenic 30.0%
!!! TCACTTTTGGAATGTGAATT+TGG + chr8_3:48171124-48171143 None:intergenic 30.0%
!!! ATCATCATTTTTAGCTTGAG+TGG - chr8_3:48171326-48171345 Msa1292140:three_prime_UTR 30.0%
GTTATTTAATATACGTACGG+TGG + chr8_3:48171456-48171475 None:intergenic 30.0%
ATTAGGAATTGAAGCAAAAC+AGG - chr8_3:48171747-48171766 Msa1292140:intron 30.0%
TTAGGAATTGAAGCAAAACA+GGG - chr8_3:48171748-48171767 Msa1292140:intron 30.0%
!!! GTTTTTTGTGAAGAAAATGG+TGG - chr8_3:48172057-48172076 Msa1292140:CDS 30.0%
AAATGAATAGGTTAGGTAGA+AGG - chr8_3:48172134-48172153 Msa1292140:five_prime_UTR 30.0%
ACATTACATACCAAAACACA+AGG + chr8_3:48172202-48172221 None:intergenic 30.0%
!!! CTTTTGGAATGTGAATTTGG+AGG + chr8_3:48171121-48171140 None:intergenic 35.0%
ATCTGAAAAAGATTGGCGTA+AGG + chr8_3:48171390-48171409 None:intergenic 35.0%
GGTCAGAATCTGAAAAAGAT+TGG + chr8_3:48171397-48171416 None:intergenic 35.0%
TATCCTCTGCATTTCTTACA+CGG - chr8_3:48171572-48171591 Msa1292140:CDS 35.0%
!! TGTTGTTTCATGGATCGATT+AGG - chr8_3:48171730-48171749 Msa1292140:intron 35.0%
TAGGAATTGAAGCAAAACAG+GGG - chr8_3:48171749-48171768 Msa1292140:intron 35.0%
! ACAGTCACAACAATGTTTTC+CGG + chr8_3:48171854-48171873 None:intergenic 35.0%
ACAATGATACAACAAAACGG+TGG + chr8_3:48171978-48171997 None:intergenic 35.0%
CCAAAACACAAGGATTGAAT+AGG + chr8_3:48172192-48172211 None:intergenic 35.0%
! CCTATTCAATCCTTGTGTTT+TGG - chr8_3:48172189-48172208 Msa1292140:five_prime_UTR 35.0%
!!! CTTTTGGAATGTGAATTTGG+AGG + chr8_3:48171121-48171140 None:intergenic 35.0%
ATCTGAAAAAGATTGGCGTA+AGG + chr8_3:48171390-48171409 None:intergenic 35.0%
GGTCAGAATCTGAAAAAGAT+TGG + chr8_3:48171397-48171416 None:intergenic 35.0%
TATCCTCTGCATTTCTTACA+CGG - chr8_3:48171572-48171591 Msa1292140:CDS 35.0%
!! TGTTGTTTCATGGATCGATT+AGG - chr8_3:48171730-48171749 Msa1292140:intron 35.0%
TAGGAATTGAAGCAAAACAG+GGG - chr8_3:48171749-48171768 Msa1292140:intron 35.0%
! ACAGTCACAACAATGTTTTC+CGG + chr8_3:48171854-48171873 None:intergenic 35.0%
ACAATGATACAACAAAACGG+TGG + chr8_3:48171978-48171997 None:intergenic 35.0%
CCAAAACACAAGGATTGAAT+AGG + chr8_3:48172192-48172211 None:intergenic 35.0%
! CCTATTCAATCCTTGTGTTT+TGG - chr8_3:48172189-48172208 Msa1292140:five_prime_UTR 35.0%
AATGTGTGTGTTTGTGTAGG+TGG + chr8_3:48171094-48171113 None:intergenic 40.0%
! GGGAAGGAAAGAATCACTTT+TGG + chr8_3:48171137-48171156 None:intergenic 40.0%
GAACACAAAGAAGGAAGGAA+GGG + chr8_3:48171157-48171176 None:intergenic 40.0%
TTGAGGAACACAAAGAAGGA+AGG + chr8_3:48171162-48171181 None:intergenic 40.0%
GTGTTTGAGGAACACAAAGA+AGG + chr8_3:48171166-48171185 None:intergenic 40.0%
CTCTTACACTCATGTGTTTG+AGG + chr8_3:48171179-48171198 None:intergenic 40.0%
CTCAAACACATGAGTGTAAG+AGG - chr8_3:48171177-48171196 Msa1292140:three_prime_UTR 40.0%
TCAACACACTGGTGTAACAT+CGG + chr8_3:48171644-48171663 None:intergenic 40.0%
AATCTTCTGCATCAACACAC+TGG + chr8_3:48171655-48171674 None:intergenic 40.0%
!! AGTTTTTCAGTGATGATGCC+AGG - chr8_3:48171776-48171795 Msa1292140:intron 40.0%
!! GTTTTTCAGTGATGATGCCA+GGG - chr8_3:48171777-48171796 Msa1292140:intron 40.0%
!! TTTTTCAGTGATGATGCCAG+GGG - chr8_3:48171778-48171797 Msa1292140:intron 40.0%
TACAAAGGAATCGGTAGTTG+CGG + chr8_3:48171905-48171924 None:intergenic 40.0%
AATGTGTGTGTTTGTGTAGG+TGG + chr8_3:48171094-48171113 None:intergenic 40.0%
! GGGAAGGAAAGAATCACTTT+TGG + chr8_3:48171137-48171156 None:intergenic 40.0%
GAACACAAAGAAGGAAGGAA+GGG + chr8_3:48171157-48171176 None:intergenic 40.0%
TTGAGGAACACAAAGAAGGA+AGG + chr8_3:48171162-48171181 None:intergenic 40.0%
GTGTTTGAGGAACACAAAGA+AGG + chr8_3:48171166-48171185 None:intergenic 40.0%
CTCTTACACTCATGTGTTTG+AGG + chr8_3:48171179-48171198 None:intergenic 40.0%
CTCAAACACATGAGTGTAAG+AGG - chr8_3:48171177-48171196 Msa1292140:three_prime_UTR 40.0%
TCAACACACTGGTGTAACAT+CGG + chr8_3:48171644-48171663 None:intergenic 40.0%
AATCTTCTGCATCAACACAC+TGG + chr8_3:48171655-48171674 None:intergenic 40.0%
!! AGTTTTTCAGTGATGATGCC+AGG - chr8_3:48171776-48171795 Msa1292140:intron 40.0%
!! GTTTTTCAGTGATGATGCCA+GGG - chr8_3:48171777-48171796 Msa1292140:intron 40.0%
!! TTTTTCAGTGATGATGCCAG+GGG - chr8_3:48171778-48171797 Msa1292140:intron 40.0%
TACAAAGGAATCGGTAGTTG+CGG + chr8_3:48171905-48171924 None:intergenic 40.0%
TGTGTTTGTGTAGGTGGTGA+TGG + chr8_3:48171088-48171107 None:intergenic 45.0%
ACAAAGAAGGAAGGAAGGGA+AGG + chr8_3:48171153-48171172 None:intergenic 45.0%
GGAACACAAAGAAGGAAGGA+AGG + chr8_3:48171158-48171177 None:intergenic 45.0%
! GGGAAGGTGTAAGATGATCT+TGG + chr8_3:48171250-48171269 None:intergenic 45.0%
TCCTCTCTTGTTGCTACCAT+TGG - chr8_3:48171351-48171370 Msa1292140:three_prime_UTR 45.0%
CCTCTCTTGTTGCTACCATT+GGG - chr8_3:48171352-48171371 Msa1292140:three_prime_UTR 45.0%
AGGAACGAACTTTGTCCCAA+TGG + chr8_3:48171370-48171389 None:intergenic 45.0%
ACACCGTGTAAGAAATGCAG+AGG + chr8_3:48171578-48171597 None:intergenic 45.0%
CGGCTGCAGAGTTAGTAATT+TGG + chr8_3:48171624-48171643 None:intergenic 45.0%
CATGGCATCGCTATGAACTT+TGG + chr8_3:48171812-48171831 None:intergenic 45.0%
TGTGTTTGTGTAGGTGGTGA+TGG + chr8_3:48171088-48171107 None:intergenic 45.0%
ACAAAGAAGGAAGGAAGGGA+AGG + chr8_3:48171153-48171172 None:intergenic 45.0%
GGAACACAAAGAAGGAAGGA+AGG + chr8_3:48171158-48171177 None:intergenic 45.0%
! GGGAAGGTGTAAGATGATCT+TGG + chr8_3:48171250-48171269 None:intergenic 45.0%
TCCTCTCTTGTTGCTACCAT+TGG - chr8_3:48171351-48171370 Msa1292140:three_prime_UTR 45.0%
CCTCTCTTGTTGCTACCATT+GGG - chr8_3:48171352-48171371 Msa1292140:three_prime_UTR 45.0%
AGGAACGAACTTTGTCCCAA+TGG + chr8_3:48171370-48171389 None:intergenic 45.0%
ACACCGTGTAAGAAATGCAG+AGG + chr8_3:48171578-48171597 None:intergenic 45.0%
CGGCTGCAGAGTTAGTAATT+TGG + chr8_3:48171624-48171643 None:intergenic 45.0%
CATGGCATCGCTATGAACTT+TGG + chr8_3:48171812-48171831 None:intergenic 45.0%
!!! TTTTAAATTTTAGTTTTTAT+TGG - chr8_3:48172280-48172299 Msa1292140:five_prime_UTR 5.0%
!!! TTTAAATTTTAGTTTTTATT+GGG - chr8_3:48172281-48172300 Msa1292140:five_prime_UTR 5.0%
!!! TTTTAAATTTTAGTTTTTAT+TGG - chr8_3:48172280-48172299 Msa1292140:five_prime_UTR 5.0%
!!! TTTAAATTTTAGTTTTTATT+GGG - chr8_3:48172281-48172300 Msa1292140:five_prime_UTR 5.0%
!! TTGTGTAGGTGGTGATGGTG+AGG + chr8_3:48171083-48171102 None:intergenic 50.0%
TCATCTTACACCTTCCCACG+TGG - chr8_3:48171253-48171272 Msa1292140:three_prime_UTR 50.0%
AGTGCCCAAAGGGAAACCAA+GGG + chr8_3:48171294-48171313 None:intergenic 50.0%
CCCAATGGTAGCAACAAGAG+AGG + chr8_3:48171355-48171374 None:intergenic 50.0%
AACTTTGGCACATCATCCCC+TGG + chr8_3:48171797-48171816 None:intergenic 50.0%
CATGTCCGTGTCAACCATCA+CGG - chr8_3:48171828-48171847 Msa1292140:intron 50.0%
! ACAATGTTTTCCGGCCGTGA+TGG + chr8_3:48171845-48171864 None:intergenic 50.0%
AAAGGAATCGGTAGTTGCGG+TGG + chr8_3:48171902-48171921 None:intergenic 50.0%
!! TTGTGTAGGTGGTGATGGTG+AGG + chr8_3:48171083-48171102 None:intergenic 50.0%
TCATCTTACACCTTCCCACG+TGG - chr8_3:48171253-48171272 Msa1292140:three_prime_UTR 50.0%
AGTGCCCAAAGGGAAACCAA+GGG + chr8_3:48171294-48171313 None:intergenic 50.0%
CCCAATGGTAGCAACAAGAG+AGG + chr8_3:48171355-48171374 None:intergenic 50.0%
AACTTTGGCACATCATCCCC+TGG + chr8_3:48171797-48171816 None:intergenic 50.0%
CATGTCCGTGTCAACCATCA+CGG - chr8_3:48171828-48171847 Msa1292140:intron 50.0%
! ACAATGTTTTCCGGCCGTGA+TGG + chr8_3:48171845-48171864 None:intergenic 50.0%
AAAGGAATCGGTAGTTGCGG+TGG + chr8_3:48171902-48171921 None:intergenic 50.0%
CTAGATGCATCCACGTGGGA+AGG + chr8_3:48171266-48171285 None:intergenic 55.0%
CGGTCTAGATGCATCCACGT+GGG + chr8_3:48171270-48171289 None:intergenic 55.0%
ACGGTCTAGATGCATCCACG+TGG + chr8_3:48171271-48171290 None:intergenic 55.0%
GATGCATCTAGACCGTCCCT+TGG - chr8_3:48171275-48171294 Msa1292140:three_prime_UTR 55.0%
ACCGTCCCTTGGTTTCCCTT+TGG - chr8_3:48171286-48171305 Msa1292140:three_prime_UTR 55.0%
CCCAAAGGGAAACCAAGGGA+CGG + chr8_3:48171290-48171309 None:intergenic 55.0%
CCGTCCCTTGGTTTCCCTTT+GGG - chr8_3:48171287-48171306 Msa1292140:three_prime_UTR 55.0%
CAGTGCCCAAAGGGAAACCA+AGG + chr8_3:48171295-48171314 None:intergenic 55.0%
AGAGAAGGGCAGTGCCCAAA+GGG + chr8_3:48171304-48171323 None:intergenic 55.0%
AAGAGAAGGGCAGTGCCCAA+AGG + chr8_3:48171305-48171324 None:intergenic 55.0%
CGTGATGGTTGACACGGACA+TGG + chr8_3:48171830-48171849 None:intergenic 55.0%
!! GGTAGTTGCGGTGGCTTTAG+CGG + chr8_3:48171893-48171912 None:intergenic 55.0%
CTAGATGCATCCACGTGGGA+AGG + chr8_3:48171266-48171285 None:intergenic 55.0%
CGGTCTAGATGCATCCACGT+GGG + chr8_3:48171270-48171289 None:intergenic 55.0%
ACGGTCTAGATGCATCCACG+TGG + chr8_3:48171271-48171290 None:intergenic 55.0%
GATGCATCTAGACCGTCCCT+TGG - chr8_3:48171275-48171294 Msa1292140:three_prime_UTR 55.0%
ACCGTCCCTTGGTTTCCCTT+TGG - chr8_3:48171286-48171305 Msa1292140:three_prime_UTR 55.0%
CCCAAAGGGAAACCAAGGGA+CGG + chr8_3:48171290-48171309 None:intergenic 55.0%
CCGTCCCTTGGTTTCCCTTT+GGG - chr8_3:48171287-48171306 Msa1292140:three_prime_UTR 55.0%
CAGTGCCCAAAGGGAAACCA+AGG + chr8_3:48171295-48171314 None:intergenic 55.0%
AGAGAAGGGCAGTGCCCAAA+GGG + chr8_3:48171304-48171323 None:intergenic 55.0%
AAGAGAAGGGCAGTGCCCAA+AGG + chr8_3:48171305-48171324 None:intergenic 55.0%
CGTGATGGTTGACACGGACA+TGG + chr8_3:48171830-48171849 None:intergenic 55.0%
!! GGTAGTTGCGGTGGCTTTAG+CGG + chr8_3:48171893-48171912 None:intergenic 55.0%
TCCGTGTCAACCATCACGGC+CGG - chr8_3:48171832-48171851 Msa1292140:intron 60.0%
TCCGGCCGTGATGGTTGACA+CGG + chr8_3:48171836-48171855 None:intergenic 60.0%
!! AGTTGCGGTGGCTTTAGCGG+TGG + chr8_3:48171890-48171909 None:intergenic 60.0%
TCCGTGTCAACCATCACGGC+CGG - chr8_3:48171832-48171851 Msa1292140:intron 60.0%
TCCGGCCGTGATGGTTGACA+CGG + chr8_3:48171836-48171855 None:intergenic 60.0%
!! AGTTGCGGTGGCTTTAGCGG+TGG + chr8_3:48171890-48171909 None:intergenic 60.0%
!! TGCGGTGGCTTTAGCGGTGG+CGG + chr8_3:48171887-48171906 None:intergenic 65.0%
!! TGCGGTGGCTTTAGCGGTGG+CGG + chr8_3:48171887-48171906 None:intergenic 65.0%
!! GGTGGCTTTAGCGGTGGCGG+CGG + chr8_3:48171884-48171903 None:intergenic 70.0%
!! GGTGGCTTTAGCGGTGGCGG+CGG + chr8_3:48171884-48171903 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 48171045 48172313 48171045 ID=Msa1292140;Name=Msa1292140
chr8_3 mRNA 48171045 48172313 48171045 ID=Msa1292140-mRNA-1;Parent=Msa1292140;Name=Msa1292140-mRNA-1;_AED=0.00;_eAED=0.00;_QI=194|1|1|1|1|1|2|382|132
chr8_3 exon 48171045 48171606 48171045 ID=Msa1292140-mRNA-1:exon:13344;Parent=Msa1292140-mRNA-1
chr8_3 exon 48171901 48172313 48171901 ID=Msa1292140-mRNA-1:exon:13343;Parent=Msa1292140-mRNA-1
chr8_3 five_prime_UTR 48172120 48172313 48172120 ID=Msa1292140-mRNA-1:five_prime_utr;Parent=Msa1292140-mRNA-1
chr8_3 CDS 48171901 48172119 48171901 ID=Msa1292140-mRNA-1:cds;Parent=Msa1292140-mRNA-1
chr8_3 CDS 48171427 48171606 48171427 ID=Msa1292140-mRNA-1:cds;Parent=Msa1292140-mRNA-1
chr8_3 three_prime_UTR 48171045 48171426 48171045 ID=Msa1292140-mRNA-1:three_prime_utr;Parent=Msa1292140-mRNA-1
Gene Sequence

>Msa1292140

ATGGAGAGCCAAGATCATCTTACACCTTCCCACGTGGATGCATCTAGACCGTCCCTTGGTTTCCCTTTGGGCACTGCCCTTCTCTTGATCATCATTTTTAGCTTGAGTGGTATCCTCTCTTGTTGCTACCATTGGGACAAAGTTCGTTCCTTACGCCAATCTTTTTCAGATTCTGACCCTCAAAGTCATTCATCAAATAAATCTAAACTTTACTCCACCGAATTGAAGCAAAACAGGGGAGAAAGTTTTTCAGTGATGATGCCAGGGGATGATGTGCCAAAGTTCATAGCGATGCCATGTCCGTGTCAACCATCACGGCCGGAAAACATTGTTGTGACTGTCGAGAAGCCGCCGCCACCGCTAAAGCCACCGCAACTACCGATTCCTTTGTATTTGTAA

Protein sequence

>Msa1292140

MESQDHLTPSHVDASRPSLGFPLGTALLLIIIFSLSGILSCCYHWDKVRSLRQSFSDSDPQSHSSNKSKLYSTELKQNRGESFSVMMPGDDVPKFIAMPCPCQPSRPENIVVTVEKPPPPLKPPQLPIPLYL*