AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0527210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0527210 MtrunA17_Chr1g0157481 96.716 335 9 1 1 335 1 333 0.0 620
Msa0527210 MtrunA17_Chr5g0447531 46.215 251 117 7 78 324 17 253 1.04e-63 202
Msa0527210 MtrunA17_Chr6g0453141 48.133 241 113 7 85 324 24 253 1.48e-62 200
Msa0527210 MtrunA17_Chr6g0453151 50.926 216 95 6 109 324 116 320 2.30e-62 201
Msa0527210 MtrunA17_Chr4g0051941 47.934 242 113 7 85 324 24 254 3.62e-62 199
Msa0527210 MtrunA17_Chr6g0453181 50.901 222 98 6 103 324 43 253 5.53e-62 198
Msa0527210 MtrunA17_Chr6g0453161 51.389 216 94 6 109 324 316 520 8.96e-59 197
Msa0527210 MtrunA17_Chr6g0453161 50.926 216 95 6 109 324 51 255 1.89e-58 197
Msa0527210 MtrunA17_Chr2g0318521 46.575 219 108 3 106 324 43 252 1.75e-58 189
Msa0527210 MtrunA17_Chr6g0476641 44.444 234 114 4 95 326 57 276 9.60e-50 167
Msa0527210 MtrunA17_Chr6g0464511 43.860 228 83 8 97 324 18 200 9.16e-44 149
Msa0527210 MtrunA17_Chr3g0133901 39.669 242 105 7 105 331 49 264 8.94e-41 143
Msa0527210 MtrunA17_Chr8g0345631 31.868 273 142 7 72 330 24 266 7.83e-36 130
Msa0527210 MtrunA17_Chr6g0462031 39.500 200 99 7 127 325 56 234 1.81e-35 129
Msa0527210 MtrunA17_Chr3g0092091 38.208 212 99 8 127 330 63 250 3.50e-34 125
Msa0527210 MtrunA17_Chr2g0301081 36.916 214 107 5 127 331 72 266 3.15e-33 124
Msa0527210 MtrunA17_Chr5g0448421 36.245 229 106 8 128 335 68 277 7.57e-33 123
Msa0527210 MtrunA17_Chr5g0448411 36.245 229 106 8 128 335 66 275 7.62e-33 123
Msa0527210 MtrunA17_Chr4g0006181 34.848 264 97 11 114 331 112 346 1.66e-28 113
Msa0527210 MtrunA17_Chr6g0453171 61.039 77 27 2 248 324 13 86 3.11e-24 95.1
Msa0527210 MtrunA17_Chr3g0113311 30.131 229 90 6 127 310 67 270 5.64e-18 82.8
Msa0527210 MtrunA17_Chr2g0279001 32.287 223 102 8 114 310 57 256 6.16e-17 79.3
Msa0527210 MtrunA17_Chr2g0296081 49.333 75 33 2 255 329 32 101 1.11e-16 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0527210 AT1G76570.1 76.744 301 63 2 37 331 28 327 2.24e-174 487
Msa0527210 AT3G27690.2 50.655 229 96 6 99 324 72 286 9.26e-67 212
Msa0527210 AT3G27690.1 50.655 229 96 6 99 324 40 254 1.11e-66 211
Msa0527210 AT2G05100.1 45.489 266 125 8 65 324 2 253 4.09e-65 207
Msa0527210 AT2G05070.1 49.782 229 98 6 99 324 39 253 5.72e-65 206
Msa0527210 AT1G29930.1 49.776 223 102 6 102 324 43 255 6.26e-62 199
Msa0527210 AT1G29920.1 49.776 223 102 6 102 324 43 255 8.11e-62 198
Msa0527210 AT1G29910.1 49.776 223 102 6 102 324 43 255 8.11e-62 198
Msa0527210 AT2G34430.1 49.123 228 106 6 97 324 37 254 2.63e-61 197
Msa0527210 AT2G34420.1 49.776 223 102 6 102 324 41 253 4.88e-61 196
Msa0527210 AT5G54270.1 46.119 219 109 3 106 324 44 253 1.03e-58 190
Msa0527210 AT2G05100.2 44.400 250 119 8 65 308 2 237 1.54e-53 179
Msa0527210 AT4G10340.1 47.297 222 97 5 109 326 62 267 4.64e-48 163
Msa0527210 AT1G45474.2 38.117 223 91 5 127 329 56 251 2.71e-39 139
Msa0527210 AT1G45474.1 38.117 223 91 5 127 329 56 251 2.71e-39 139
Msa0527210 AT3G54890.1 42.500 200 93 7 127 325 55 233 1.34e-37 135
Msa0527210 AT3G47470.1 34.979 243 123 9 96 330 36 251 4.87e-35 128
Msa0527210 AT1G19150.1 36.279 215 107 5 127 331 75 269 4.63e-34 126
Msa0527210 AT1G61520.3 35.926 270 124 11 89 335 30 273 9.01e-34 125
Msa0527210 AT1G61520.1 35.926 270 124 11 89 335 30 273 9.01e-34 125
Msa0527210 AT3G61470.1 34.234 222 116 5 120 330 53 255 3.37e-33 124
Msa0527210 AT1G61520.2 35.874 223 103 8 134 335 15 218 9.57e-30 113
Msa0527210 AT5G01530.1 34.221 263 100 10 114 331 55 289 1.46e-28 112
Msa0527210 AT3G08940.2 33.218 289 117 12 92 331 25 286 3.53e-28 111
Msa0527210 AT3G54890.2 33.333 228 85 7 99 325 38 199 1.43e-24 99.8
Msa0527210 AT3G54890.4 41.212 165 72 6 127 289 55 196 2.28e-23 96.7
Msa0527210 AT2G40100.1 32.407 216 102 9 110 310 82 268 1.28e-16 79.3
Msa0527210 AT5G28450.1 47.368 76 39 1 256 330 96 171 1.05e-15 74.3
Msa0527210 AT3G54890.3 43.529 85 41 2 127 211 55 132 1.44e-12 65.5

Find 118 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGATCTTTGGACAGATTTA+AGG 0.152281 3_4:+81483421 None:intergenic
AGATGTTGTGTTCTGGGTTT+TGG 0.172127 3_4:+81486666 None:intergenic
TTCAAAAGCTTCAGGATCTT+TGG 0.220610 3_4:+81483409 None:intergenic
GGGGAACTGCCTGGGGATTA+TGG 0.220707 3_4:-81486285 Msa0527210:CDS
TCCTGAGTTATTAGACCTAT+TGG 0.230242 3_4:-81486045 Msa0527210:CDS
CATGGCTGTTGTGCAGGTTT+TGG 0.262087 3_4:-81483118 Msa0527210:three_prime_UTR
GGGTAGCCATCATACGAAAT+AGG 0.272531 3_4:+81486321 None:intergenic
GCAGATGAGATGTTGTGTTC+TGG 0.276090 3_4:+81486659 None:intergenic
TTCAGCTCTTCAAAAGCTTC+AGG 0.290764 3_4:+81483401 None:intergenic
CCACAATATCTGGCGTATTC+TGG 0.301086 3_4:+81483518 None:intergenic
TGCTTCAATCCCACAATATC+TGG 0.308295 3_4:+81483508 None:intergenic
TCTTCATCTTGTTTCGTTAG+TGG 0.309561 3_4:-81486729 Msa0527210:CDS
AATCACACATTTCTTAAAAC+TGG 0.315099 3_4:+81483032 None:intergenic
GCTATAGCTAACAGTCCATT+AGG 0.317955 3_4:-81486570 Msa0527210:CDS
GATTATGGCTTTGACATTGC+TGG 0.328181 3_4:-81486270 Msa0527210:CDS
CTTTGAAGTGACTCCCCTAA+TGG 0.329323 3_4:+81486555 None:intergenic
ATCTCATCTGCAATGCTTCA+TGG 0.333732 3_4:-81486647 Msa0527210:CDS
TATTTGCCAAGTACTCCTTA+TGG 0.335720 3_4:-81483947 Msa0527210:intron
CCTGAGTTATTAGACCTATT+GGG 0.347914 3_4:-81486044 Msa0527210:CDS
CTTATTACAGCTATTACTTC+AGG 0.349625 3_4:+81483075 None:intergenic
CAGATGAGATGTTGTGTTCT+GGG 0.350739 3_4:+81486660 None:intergenic
GAAGGCCTGTTGTTAATTAG+AGG 0.355824 3_4:+81482926 None:intergenic
AAGTAACTTAATTGTTTGTT+TGG 0.359607 3_4:+81482904 None:intergenic
TTCACTTTGTTGAACCTGTT+TGG 0.368694 3_4:-81486016 Msa0527210:CDS
CTGCAGTTCCACTGGATCCT+TGG 0.370306 3_4:+81486242 None:intergenic
TTGAGATATTGCATGCTCGC+TGG 0.371386 3_4:-81486097 Msa0527210:CDS
CCTTTCCACAACAACTTGCT+TGG 0.375325 3_4:-81483263 Msa0527210:CDS
CTTTCCACAACAACTTGCTT+GGG 0.383331 3_4:-81483262 Msa0527210:CDS
GGATCTTTGGACAGATTTAA+GGG 0.386269 3_4:+81483422 None:intergenic
GCTTCATGGCAAGAGCTTGC+TGG 0.387520 3_4:-81486633 Msa0527210:CDS
CTATAGCTAACAGTCCATTA+GGG 0.394585 3_4:-81486569 Msa0527210:CDS
CAAGGTCGGCCTCGTTGGCT+TGG 0.394675 3_4:-81486345 Msa0527210:CDS
CTTGGCCCTATTTCGTATGA+TGG 0.395875 3_4:-81486327 Msa0527210:CDS
GCTACCCATCATATCTCATT+GGG 0.406465 3_4:-81486305 Msa0527210:CDS
ATCTCATTGGGGAACTGCCT+GGG 0.413530 3_4:-81486293 Msa0527210:CDS
AGGAGTCCTTCATTTGTTGA+AGG 0.416604 3_4:-81482983 Msa0527210:three_prime_UTR
TATCTCATTGGGGAACTGCC+TGG 0.425964 3_4:-81486294 Msa0527210:CDS
ACAAAACTCCTCTAAATTCA+AGG 0.426529 3_4:-81486502 Msa0527210:CDS
CCTTCACTTAGCTGGAAGCC+AGG 0.428233 3_4:-81483986 Msa0527210:CDS
TCATTCCTCTAATTAACAAC+AGG 0.428524 3_4:-81482931 Msa0527210:three_prime_UTR
TTGGCAATGATGGCTTGGTT+AGG 0.434393 3_4:-81483353 Msa0527210:CDS
AAATGGACGCTTGGCAATGA+TGG 0.434782 3_4:-81483363 Msa0527210:CDS
AAATATTTCTGCAGTTCCAC+TGG 0.436745 3_4:+81486234 None:intergenic
AACTTAATTGTTTGTTTGGA+AGG 0.437121 3_4:+81482908 None:intergenic
AGCCTGAGCCTTGAATTTAG+AGG 0.441217 3_4:+81486494 None:intergenic
GGCTACCCATCATATCTCAT+TGG 0.443187 3_4:-81486306 Msa0527210:CDS
GGTAGCCATCATACGAAATA+GGG 0.443439 3_4:+81486322 None:intergenic
TAACCAACGCGCCACCAAAC+AGG 0.453677 3_4:+81486002 None:intergenic
CTTCCAGCTAAGTGAAGGCC+TGG 0.460265 3_4:+81483991 None:intergenic
GGATCAAACAATGCTCCTCC+AGG 0.460577 3_4:+81483443 None:intergenic
GCGTGGCATGGCTGTTGTGC+AGG 0.464275 3_4:-81483124 Msa0527210:three_prime_UTR
TGAGATATTGCATGCTCGCT+GGG 0.466215 3_4:-81486096 Msa0527210:CDS
CCAGAATACGCCAGATATTG+TGG 0.467314 3_4:-81483518 Msa0527210:CDS
CTAGATTACCTTGGCATCCC+AGG 0.469883 3_4:-81484009 Msa0527210:CDS
CGTTGGTTATTCCAAGCTCC+AGG 0.475483 3_4:-81485988 Msa0527210:intron
CTCCTCTAAATTCAAGGCTC+AGG 0.476322 3_4:-81486496 Msa0527210:CDS
ATGGACAAGGTCGGCCTCGT+TGG 0.481460 3_4:-81486350 Msa0527210:CDS
AGTTCCCCAATGAGATATGA+TGG 0.482903 3_4:+81486300 None:intergenic
TGGGCTATGCTTGCATCTGT+TGG 0.483351 3_4:-81486077 Msa0527210:CDS
TGACATTGCTGGCCTTGCCA+AGG 0.493730 3_4:-81486259 Msa0527210:CDS
ATCCCAGGCCTTCACTTAGC+TGG 0.493884 3_4:-81483994 Msa0527210:CDS
ATATTGTGGGATTGAAGCAC+TGG 0.493998 3_4:-81483504 Msa0527210:CDS
GCATTACCATAAGGAGTACT+TGG 0.495126 3_4:+81483941 None:intergenic
TTCACACAAGCGGCACTGAC+GGG 0.495505 3_4:-81483326 Msa0527210:CDS
CTTCACACAAGCGGCACTGA+CGG 0.499189 3_4:-81483327 Msa0527210:CDS
GAAGTAATAGCTGTAATAAG+TGG 0.502568 3_4:-81483072 Msa0527210:three_prime_UTR
CAAAGTGAAAGACTCCCAAT+AGG 0.506429 3_4:+81486030 None:intergenic
AACAGACCTTCAACAAATGA+AGG 0.508939 3_4:+81482977 None:intergenic
GAACATGCTAACCTGGAGCT+TGG 0.511852 3_4:+81485977 None:intergenic
GGCTTGTCTCAAACTAAGAA+AGG 0.513058 3_4:-81486798 None:intergenic
CCAGGGTAGTTTATATCACC+AGG 0.514510 3_4:+81483461 None:intergenic
TGTTAATTAGAGGAATGATA+AGG 0.514974 3_4:+81482936 None:intergenic
CAAGCGGCACTGACGGGTAA+AGG 0.516467 3_4:-81483320 Msa0527210:CDS
GACGCTTGGCAATGATGGCT+TGG 0.532277 3_4:-81483358 Msa0527210:CDS
TCAAACTAAGAAAGGAGCTA+TGG 0.534985 3_4:-81486790 Msa0527210:exon
AACGAAACAAGATGAAGAAG+AGG 0.542469 3_4:+81486734 None:intergenic
ATTCAAGGCTCAGGCTGCCA+AGG 0.545741 3_4:-81486487 Msa0527210:CDS
CTTAGCTGGAAGCCAGGGAG+TGG 0.549922 3_4:-81483980 Msa0527210:CDS
CCCAATAGGTCTAATAACTC+AGG 0.553945 3_4:+81486044 None:intergenic
TTCCAGCTAAGTGAAGGCCT+GGG 0.557148 3_4:+81483992 None:intergenic
CAATTCAATGAAATTACACT+AGG 0.563647 3_4:-81483234 Msa0527210:exon
TAGCAATCACAACCACTCCC+TGG 0.564935 3_4:+81483968 None:intergenic
AAAGCAGTTTACAGAGGAGA+GGG 0.566780 3_4:+81486692 None:intergenic
GTGACCCAAGCAAGTTGTTG+TGG 0.567405 3_4:+81483258 None:intergenic
GAACCTGTTTGGTGGCGCGT+TGG 0.568409 3_4:-81486005 Msa0527210:CDS
CCAAGCAAGTTGTTGTGGAA+AGG 0.568516 3_4:+81483263 None:intergenic
CCTCTAGGAATATATCTGCC+TGG 0.569936 3_4:-81483479 Msa0527210:CDS
ATTGAAGCACTGGAGCCTCT+AGG 0.571898 3_4:-81483494 Msa0527210:CDS
CAGAATACGCCAGATATTGT+GGG 0.576638 3_4:-81483517 Msa0527210:CDS
ACTTTGTTGAACCTGTTTGG+TGG 0.577642 3_4:-81486013 Msa0527210:CDS
AGTGAAGGCCTGGGATGCCA+AGG 0.580571 3_4:+81484001 None:intergenic
CAAAGCAGTTTACAGAGGAG+AGG 0.584363 3_4:+81486691 None:intergenic
CAAGTTGTTGTGGAAAGGAT+CGG 0.585579 3_4:+81483268 None:intergenic
CTTCACTTAGCTGGAAGCCA+GGG 0.598176 3_4:-81483985 Msa0527210:CDS
TCTCATTGGGGAACTGCCTG+GGG 0.598517 3_4:-81486292 Msa0527210:CDS
AAACAAGATGAAGAAGAGGA+AGG 0.602803 3_4:+81486738 None:intergenic
ATGTCAAAGCCATAATCCCC+AGG 0.603179 3_4:+81486276 None:intergenic
CTAAATATAAGAGACAATGT+AGG 0.609097 3_4:-81483186 Msa0527210:three_prime_UTR
ATAGCTTTGACAGCAGTGAA+AGG 0.610261 3_4:+81486588 None:intergenic
GTTAGGTTTCTTCACACAAG+CGG 0.612558 3_4:-81483336 Msa0527210:CDS
GGGGATACTCTAGATTACCT+TGG 0.624443 3_4:-81484018 Msa0527210:CDS
CCTGGCTTCCAGCTAAGTGA+AGG 0.626238 3_4:+81483986 None:intergenic
GTTCCACTGGATCCTTGGCA+AGG 0.626418 3_4:+81486247 None:intergenic
AGGTCCTGTACAAAACATTG+TGG 0.632483 3_4:-81483300 Msa0527210:CDS
GTTCCCCAATGAGATATGAT+GGG 0.633105 3_4:+81486301 None:intergenic
GCATTGATGCATTAGAGGCG+TGG 0.633762 3_4:-81483141 Msa0527210:three_prime_UTR
CCTGGTGATATAAACTACCC+TGG 0.634831 3_4:-81483461 Msa0527210:CDS
GATCAAACAATGCTCCTCCA+GGG 0.637834 3_4:+81483444 None:intergenic
CTAAGAAAGGAGCTATGGTG+TGG 0.655345 3_4:-81486785 Msa0527210:exon
TATAGCTAACAGTCCATTAG+GGG 0.659518 3_4:-81486568 Msa0527210:CDS
TGGGGCAAAGCAGTTTACAG+AGG 0.661215 3_4:+81486686 None:intergenic
GATGCATTAGAGGCGTGGCA+TGG 0.664896 3_4:-81483136 Msa0527210:three_prime_UTR
CCAGGCAGATATATTCCTAG+AGG 0.666249 3_4:+81483479 None:intergenic
TGGCCTTGCCAAGGATCCAG+TGG 0.670833 3_4:-81486250 Msa0527210:CDS
CTGCCAAGGCCAGAAAACAG+AGG 0.673764 3_4:-81486473 Msa0527210:intron
CTACCCATCATATCTCATTG+GGG 0.701642 3_4:-81486304 Msa0527210:CDS
GAAATAGGGCCAAGCCAACG+AGG 0.723058 3_4:+81486336 None:intergenic
GGTGATATAAACTACCCTGG+AGG 0.752250 3_4:-81483458 Msa0527210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAATAAAAATAATTGAAAT+CGG + chr3_4:81483217-81483236 None:intergenic 10.0%
!! TTAATGGTAAATTAAATGAA+AGG + chr3_4:81483538-81483557 None:intergenic 15.0%
!!! AGGAATTTTTTTAATGATTA+TGG - chr3_4:81484030-81484049 Msa0527210:intron 15.0%
!!! GGAATTTTTTTAATGATTAT+GGG - chr3_4:81484031-81484050 Msa0527210:intron 15.0%
!!! ATTTTCTTAATTTCTTCAAA+TGG + chr3_4:81484656-81484675 None:intergenic 15.0%
!!! TTATTAGATTTTTAACTTAG+TGG - chr3_4:81485863-81485882 Msa0527210:intron 15.0%
!! AAAGTGAAAGAAATAAAAAA+TGG - chr3_4:81486278-81486297 Msa0527210:CDS 15.0%
!! ATAACATAACATAACCATAA+TGG + chr3_4:81483465-81483484 None:intergenic 20.0%
!! AGTTTATAAAGAGAATTGAT+AGG - chr3_4:81484208-81484227 Msa0527210:intron 20.0%
!! AGTTTATAAAGAGAATTGAT+AGG - chr3_4:81484208-81484227 Msa0527210:intron 20.0%
!!! TCCCTTTTTTTAATGATTAT+GGG - chr3_4:81484349-81484368 Msa0527210:intron 20.0%
!! TCCCATAATCATTAAAAAAA+GGG + chr3_4:81484035-81484054 None:intergenic 20.0%
!! AGTTTATAAAGAGAATTGAT+AGG - chr3_4:81484208-81484227 Msa0527210:intron 20.0%
!!! TTTTTTCCAATATTTGTCAA+CGG - chr3_4:81484622-81484641 Msa0527210:intron 20.0%
!!! CTTGAATTTAAAGTGTATTT+TGG - chr3_4:81485081-81485100 Msa0527210:intron 20.0%
!! ACCAAATAATTCTAATATTG+TGG + chr3_4:81485246-81485265 None:intergenic 20.0%
!! ACTCTTATTGTTAAATGTTA+AGG - chr3_4:81485270-81485289 Msa0527210:intron 20.0%
!! CTCTTATTGTTAAATGTTAA+GGG - chr3_4:81485271-81485290 Msa0527210:intron 20.0%
!! TCTTATTGTTAAATGTTAAG+GGG - chr3_4:81485272-81485291 Msa0527210:intron 20.0%
!! AACCAAGTTATTAGATAAAT+AGG - chr3_4:81485327-81485346 Msa0527210:intron 20.0%
!! ACCAAGTTATTAGATAAATA+GGG - chr3_4:81485328-81485347 Msa0527210:intron 20.0%
!! CAATTAATAAAGTGCAATAA+TGG + chr3_4:81485477-81485496 None:intergenic 20.0%
!! AAATAAAAAGTTTCAGTAGT+TGG - chr3_4:81486011-81486030 Msa0527210:CDS 20.0%
!!! AACCATAAATTTGTTTCTTT+TGG - chr3_4:81486042-81486061 Msa0527210:CDS 20.0%
!! AAGTAACTTAATTGTTTGTT+TGG + chr3_4:81486757-81486776 None:intergenic 20.0%
! GAAAATGTTTAAGGAATGAT+AGG + chr3_4:81483278-81483297 None:intergenic 25.0%
! AACAAACTTGTGTAAGATAA+AGG + chr3_4:81483730-81483749 None:intergenic 25.0%
!! CATTTTCCACTAATTAGAAA+GGG - chr3_4:81483773-81483792 Msa0527210:intron 25.0%
!! AATTTTCCCTTTCTAATTAG+TGG + chr3_4:81483782-81483801 None:intergenic 25.0%
! CATTCATTGTAAAAGTTTAC+CGG - chr3_4:81483999-81484018 Msa0527210:CDS 25.0%
! AAAAAATTCCTTATTCATGC+CGG + chr3_4:81484021-81484040 None:intergenic 25.0%
! CATTCATTGTAAAAGTTTAC+CGG - chr3_4:81483999-81484018 Msa0527210:CDS 25.0%
!!! CTCCCTTTTTTTAATGATTA+TGG - chr3_4:81484348-81484367 Msa0527210:intron 25.0%
! CTCCCATAATCATTAAAAAA+AGG + chr3_4:81484036-81484055 None:intergenic 25.0%
! TGATATGAGTTTATAAAGAG+AGG + chr3_4:81484571-81484590 None:intergenic 25.0%
!! AAGTTTTCAAACCTGTTATA+TGG - chr3_4:81484752-81484771 Msa0527210:intron 25.0%
! ACGGTAATATTATTTAAGAG+TGG + chr3_4:81484846-81484865 None:intergenic 25.0%
! GCCACAATATTAGAATTATT+TGG - chr3_4:81485242-81485261 Msa0527210:intron 25.0%
! TCCCTATTTATCTAATAACT+TGG + chr3_4:81485332-81485351 None:intergenic 25.0%
! AATTATTGGTATAGGGATAA+GGG + chr3_4:81485437-81485456 None:intergenic 25.0%
!! TTTTTACGAAGCAAATAAAC+TGG - chr3_4:81485560-81485579 Msa0527210:intron 25.0%
!!! GATTTTTAACTTAGTGGTAT+TGG - chr3_4:81485869-81485888 Msa0527210:intron 25.0%
! CTTTCATAACTCATTTGTTT+GGG - chr3_4:81485985-81486004 Msa0527210:intron 25.0%
! GTCCAAAAGAAACAAATTTA+TGG + chr3_4:81486047-81486066 None:intergenic 25.0%
! ATTCTTATCATAAAACAGGT+TGG - chr3_4:81486116-81486135 Msa0527210:intron 25.0%
! CAATTCAATGAAATTACACT+AGG - chr3_4:81486424-81486443 Msa0527210:intron 25.0%
! CTAAATATAAGAGACAATGT+AGG - chr3_4:81486472-81486491 Msa0527210:intron 25.0%
! AATCACACATTTCTTAAAAC+TGG + chr3_4:81486629-81486648 None:intergenic 25.0%
! TGTTAATTAGAGGAATGATA+AGG + chr3_4:81486725-81486744 None:intergenic 25.0%
! AACTTAATTGTTTGTTTGGA+AGG + chr3_4:81486753-81486772 None:intergenic 25.0%
ACAAAACTCCTCTAAATTCA+AGG - chr3_4:81483156-81483175 Msa0527210:three_prime_UTR 30.0%
CCAAAAGCTGAAAATGTTTA+AGG + chr3_4:81483287-81483306 None:intergenic 30.0%
! CCTTAAACATTTTCAGCTTT+TGG - chr3_4:81483284-81483303 Msa0527210:CDS 30.0%
! AACATTTTCAGCTTTTGGTA+TGG - chr3_4:81483289-81483308 Msa0527210:CDS 30.0%
TAACATAACCATAATGGCTT+GGG + chr3_4:81483459-81483478 None:intergenic 30.0%
ATAACATAACCATAATGGCT+TGG + chr3_4:81483460-81483479 None:intergenic 30.0%
TGCAATATCTCAAAGCTTAA+TGG + chr3_4:81483554-81483573 None:intergenic 30.0%
CCTTTCTAATTAGTGGAAAA+TGG + chr3_4:81483775-81483794 None:intergenic 30.0%
! CCATTTTCCACTAATTAGAA+AGG - chr3_4:81483772-81483791 Msa0527210:intron 30.0%
CATCTTGTAATGAGAAAGAA+AGG + chr3_4:81484079-81484098 None:intergenic 30.0%
ATAGATGCCAAATATCATCA+GGG - chr3_4:81484141-81484160 Msa0527210:intron 30.0%
CATATTTCCCTGATGATATT+TGG + chr3_4:81484151-81484170 None:intergenic 30.0%
TGTCAGTTAGTTATAAAGAG+AGG + chr3_4:81484252-81484271 None:intergenic 30.0%
TGGGAGATACAAATATAACA+TGG - chr3_4:81484368-81484387 Msa0527210:intron 30.0%
CATCTTGTAATGAGAAAGAA+AGG + chr3_4:81484079-81484098 None:intergenic 30.0%
ACATAGATGCCAAATATCAT+CGG - chr3_4:81484139-81484158 Msa0527210:intron 30.0%
! ATCAATTGTGTGCTTTGTTA+TGG - chr3_4:81484693-81484712 Msa0527210:intron 30.0%
! TCAATTGTGTGCTTTGTTAT+GGG - chr3_4:81484694-81484713 Msa0527210:intron 30.0%
! TTTTCAAACCTGTTATATGG+TGG - chr3_4:81484755-81484774 Msa0527210:intron 30.0%
TTTCAAACCTGTTATATGGT+GGG - chr3_4:81484756-81484775 Msa0527210:intron 30.0%
! AAACATACGAAAGCATATCA+CGG + chr3_4:81484865-81484884 None:intergenic 30.0%
CTCTTTATAAGACTTAGAGT+GGG + chr3_4:81484916-81484935 None:intergenic 30.0%
TAGATAAATAGGGATGCTAA+AGG - chr3_4:81485338-81485357 Msa0527210:intron 30.0%
GAATTATTGGTATAGGGATA+AGG + chr3_4:81485438-81485457 None:intergenic 30.0%
TCCCTATACCAATAATTCTT+TGG - chr3_4:81485440-81485459 Msa0527210:intron 30.0%
GCCAAAGAATTATTGGTATA+GGG + chr3_4:81485444-81485463 None:intergenic 30.0%
TGCCAAAGAATTATTGGTAT+AGG + chr3_4:81485445-81485464 None:intergenic 30.0%
!! AGAAAGTGCCAAAGAATTAT+TGG + chr3_4:81485451-81485470 None:intergenic 30.0%
AGCTAAATTTATTCTCATGC+AGG + chr3_4:81485521-81485540 None:intergenic 30.0%
! CATGAGAATAAATTTAGCTC+AGG - chr3_4:81485522-81485541 Msa0527210:intron 30.0%
CATCATCACTAACATCATAT+GGG + chr3_4:81485826-81485845 None:intergenic 30.0%
ACATCATCACTAACATCATA+TGG + chr3_4:81485827-81485846 None:intergenic 30.0%
! ATATGATGTTAGTGATGATG+TGG - chr3_4:81485826-81485845 Msa0527210:intron 30.0%
! TTAGTGGTATTGGATGTATT+GGG - chr3_4:81485879-81485898 Msa0527210:intron 30.0%
TACAAATCGAACATTTCTCA+TGG - chr3_4:81485914-81485933 Msa0527210:intron 30.0%
GCTTTCATAACTCATTTGTT+TGG - chr3_4:81485984-81486003 Msa0527210:intron 30.0%
AGCTACTGTTACTACTAATT+TGG - chr3_4:81486092-81486111 Msa0527210:CDS 30.0%
GCTACTGTTACTACTAATTT+GGG - chr3_4:81486093-81486112 Msa0527210:CDS 30.0%
TGGGATTCTTATCATAAAAC+AGG - chr3_4:81486112-81486131 Msa0527210:intron 30.0%
AGAAATAAAAAATGGACGCT+TGG - chr3_4:81486286-81486305 Msa0527210:CDS 30.0%
!! ATTTTGCATTGATGCATTAG+AGG - chr3_4:81486512-81486531 Msa0527210:CDS 30.0%
CTTATTACAGCTATTACTTC+AGG + chr3_4:81486586-81486605 None:intergenic 30.0%
GAAGTAATAGCTGTAATAAG+TGG - chr3_4:81486586-81486605 Msa0527210:CDS 30.0%
GAATGATAAGGTCACAAAAA+CGG + chr3_4:81486713-81486732 None:intergenic 30.0%
TCATTCCTCTAATTAACAAC+AGG - chr3_4:81486727-81486746 Msa0527210:CDS 30.0%
TCAAACTAAGAAAGGAGCTA+TGG - chr3_4:81482868-81482887 Msa0527210:three_prime_UTR 35.0%
AAACAAGATGAAGAAGAGGA+AGG + chr3_4:81482923-81482942 None:intergenic 35.0%
AACGAAACAAGATGAAGAAG+AGG + chr3_4:81482927-81482946 None:intergenic 35.0%
! TCTTCATCTTGTTTCGTTAG+TGG - chr3_4:81482929-81482948 Msa0527210:three_prime_UTR 35.0%
CTATAGCTAACAGTCCATTA+GGG - chr3_4:81483089-81483108 Msa0527210:three_prime_UTR 35.0%
TATAGCTAACAGTCCATTAG+GGG - chr3_4:81483090-81483109 Msa0527210:three_prime_UTR 35.0%
GGAGTCACTTCAAAGAAAAA+TGG - chr3_4:81483111-81483130 Msa0527210:three_prime_UTR 35.0%
! AAATATTTCTGCAGTTCCAC+TGG + chr3_4:81483427-81483446 None:intergenic 35.0%
TCCTGAGTTATTAGACCTAT+TGG - chr3_4:81483613-81483632 Msa0527210:intron 35.0%
CCTGAGTTATTAGACCTATT+GGG - chr3_4:81483614-81483633 Msa0527210:intron 35.0%
TTCACTTTGTTGAACCTGTT+TGG - chr3_4:81483642-81483661 Msa0527210:intron 35.0%
TCTCTCATTTCATCGACAAT+AGG - chr3_4:81483972-81483991 Msa0527210:CDS 35.0%
CTCTCATTTCATCGACAATA+GGG - chr3_4:81483973-81483992 Msa0527210:CDS 35.0%
AAAGTTTACCGGCATGAATA+AGG - chr3_4:81484010-81484029 Msa0527210:CDS 35.0%
TGGGAGATGCAAATATAACA+TGG - chr3_4:81484050-81484069 Msa0527210:intron 35.0%
CATAGATGCCAAATATCATC+AGG - chr3_4:81484140-81484159 Msa0527210:intron 35.0%
AGAGAATTGATAGGCTCATA+AGG - chr3_4:81484217-81484236 Msa0527210:intron 35.0%
AGAGAATTGATAGGCTCAAT+AGG - chr3_4:81484283-81484302 Msa0527210:intron 35.0%
GAGAATTGATAGGCTCAATA+GGG - chr3_4:81484284-81484303 Msa0527210:intron 35.0%
AAAGTTTACCGGCATGAATT+TGG - chr3_4:81484321-81484340 Msa0527210:intron 35.0%
CATAGATGCCAAATATCATC+GGG - chr3_4:81484140-81484159 Msa0527210:intron 35.0%
ATAGATGCCAAATATCATCG+GGG - chr3_4:81484460-81484479 Msa0527210:intron 35.0%
CATATTTCCCCGATGATATT+TGG + chr3_4:81484470-81484489 None:intergenic 35.0%
CTTATCAGTTAGTTATGCAG+TGG + chr3_4:81484507-81484526 None:intergenic 35.0%
AGAGAATTGATAGGCTCATA+AGG - chr3_4:81484217-81484236 Msa0527210:intron 35.0%
AGAGTCCTATATTTCCAATG+TGG - chr3_4:81484591-81484610 Msa0527210:intron 35.0%
GAGTCCTATATTTCCAATGT+GGG - chr3_4:81484592-81484611 Msa0527210:intron 35.0%
AAGTCCCACATTGGAAATAT+AGG + chr3_4:81484599-81484618 None:intergenic 35.0%
TATATTTCCAATGTGGGACT+TGG - chr3_4:81484598-81484617 Msa0527210:intron 35.0%
ATATTTCCAATGTGGGACTT+GGG - chr3_4:81484599-81484618 Msa0527210:intron 35.0%
GTAGTACCGTTGACAAATAT+TGG + chr3_4:81484631-81484650 None:intergenic 35.0%
TTCAAACCTGTTATATGGTG+GGG - chr3_4:81484757-81484776 Msa0527210:intron 35.0%
! TGTTATATGGTGGGGAAAAA+GGG - chr3_4:81484765-81484784 Msa0527210:intron 35.0%
TCGACAACACTACATAGAAT+TGG - chr3_4:81484820-81484839 Msa0527210:intron 35.0%
CCTCTTTATAAGACTTAGAG+TGG + chr3_4:81484917-81484936 None:intergenic 35.0%
! CCACTCTAAGTCTTATAAAG+AGG - chr3_4:81484914-81484933 Msa0527210:intron 35.0%
TTTCGACAGGATAACAGTAT+TGG + chr3_4:81484973-81484992 None:intergenic 35.0%
AAGTTAGTGACAATTTCGAC+AGG + chr3_4:81484986-81485005 None:intergenic 35.0%
!!! TATTTTGGTATTCACCCTTG+TGG - chr3_4:81485096-81485115 Msa0527210:intron 35.0%
TGTATCAAGCTTAAGCTACA+AGG - chr3_4:81485214-81485233 Msa0527210:intron 35.0%
GTATCAAGCTTAAGCTACAA+GGG - chr3_4:81485215-81485234 Msa0527210:intron 35.0%
TATCAAGCTTAAGCTACAAG+GGG - chr3_4:81485216-81485235 Msa0527210:intron 35.0%
GTTAAATGTTAAGGGGCTAA+TGG - chr3_4:81485279-81485298 Msa0527210:intron 35.0%
TATTTGCCAAGTACTCCTTA+TGG - chr3_4:81485711-81485730 Msa0527210:intron 35.0%
TGGATACAAGCATTACCATA+AGG + chr3_4:81485729-81485748 None:intergenic 35.0%
ATAATATTAGCAGAGCTCAC+AGG + chr3_4:81485765-81485784 None:intergenic 35.0%
! CTTAGTGGTATTGGATGTAT+TGG - chr3_4:81485878-81485897 Msa0527210:intron 35.0%
! GTTCGATTTGTAGAATCGAA+AGG + chr3_4:81485906-81485925 None:intergenic 35.0%
GGATCTTTGGACAGATTTAA+GGG + chr3_4:81486239-81486258 None:intergenic 35.0%
AGGATCTTTGGACAGATTTA+AGG + chr3_4:81486240-81486259 None:intergenic 35.0%
TTCAAAAGCTTCAGGATCTT+TGG + chr3_4:81486252-81486271 None:intergenic 35.0%
! TGATCCACAATGTTTTGTAC+AGG + chr3_4:81486365-81486384 None:intergenic 35.0%
! TGTGATTTTATTGTTGCGCA+AGG - chr3_4:81486642-81486661 Msa0527210:CDS 35.0%
! GTGATTTTATTGTTGCGCAA+GGG - chr3_4:81486643-81486662 Msa0527210:CDS 35.0%
AACAGACCTTCAACAAATGA+AGG + chr3_4:81486684-81486703 None:intergenic 35.0%
AAAGCAGTTTACAGAGGAGA+GGG + chr3_4:81482969-81482988 None:intergenic 40.0%
!! ATGTTGTGTTCTGGGTTTTG+GGG + chr3_4:81482993-81483012 None:intergenic 40.0%
!! GATGTTGTGTTCTGGGTTTT+GGG + chr3_4:81482994-81483013 None:intergenic 40.0%
!! AGATGTTGTGTTCTGGGTTT+TGG + chr3_4:81482995-81483014 None:intergenic 40.0%
CAGATGAGATGTTGTGTTCT+GGG + chr3_4:81483001-81483020 None:intergenic 40.0%
ATCTCATCTGCAATGCTTCA+TGG - chr3_4:81483011-81483030 Msa0527210:three_prime_UTR 40.0%
!! ATAGCTTTGACAGCAGTGAA+AGG + chr3_4:81483073-81483092 None:intergenic 40.0%
GCTATAGCTAACAGTCCATT+AGG - chr3_4:81483088-81483107 Msa0527210:three_prime_UTR 40.0%
! TTCAGCTTTTGGTATGGACA+AGG - chr3_4:81483295-81483314 Msa0527210:CDS 40.0%
GGTAGCCATCATACGAAATA+GGG + chr3_4:81483339-81483358 None:intergenic 40.0%
GCTACCCATCATATCTCATT+GGG - chr3_4:81483353-81483372 Msa0527210:CDS 40.0%
CTACCCATCATATCTCATTG+GGG - chr3_4:81483354-81483373 Msa0527210:CDS 40.0%
GTTCCCCAATGAGATATGAT+GGG + chr3_4:81483360-81483379 None:intergenic 40.0%
AGTTCCCCAATGAGATATGA+TGG + chr3_4:81483361-81483380 None:intergenic 40.0%
!! GATTATGGCTTTGACATTGC+TGG - chr3_4:81483388-81483407 Msa0527210:CDS 40.0%
CCCAATAGGTCTAATAACTC+AGG + chr3_4:81483617-81483636 None:intergenic 40.0%
CAAAGTGAAAGACTCCCAAT+AGG + chr3_4:81483631-81483650 None:intergenic 40.0%
ACTTTGTTGAACCTGTTTGG+TGG - chr3_4:81483645-81483664 Msa0527210:intron 40.0%
AGAGATAGAACATGCTAACC+TGG + chr3_4:81483691-81483710 None:intergenic 40.0%
!! ACACTTTTCAGGATCAGCAT+GGG + chr3_4:81483873-81483892 None:intergenic 40.0%
!! CTGATCCTGAAAAGTGTCAT+GGG - chr3_4:81483876-81483895 Msa0527210:intron 40.0%
CTTATCAGTTAGCTATGCAG+TGG + chr3_4:81484188-81484207 None:intergenic 40.0%
ATTGATAGGCTCATAAGGTG+AGG - chr3_4:81484222-81484241 Msa0527210:intron 40.0%
TCAGTTAGTTATGCAGTGGT+AGG + chr3_4:81484503-81484522 None:intergenic 40.0%
ATTGATAGGCTCATAAGGTG+AGG - chr3_4:81484222-81484241 Msa0527210:intron 40.0%
AAAAAACCCAAGTCCCACAT+TGG + chr3_4:81484608-81484627 None:intergenic 40.0%
! CTTTTTCCCCACCATATAAC+AGG + chr3_4:81484766-81484785 None:intergenic 40.0%
! CTGTTATATGGTGGGGAAAA+AGG - chr3_4:81484764-81484783 Msa0527210:intron 40.0%
GAAGCTATTCAGTTCACTTC+TGG - chr3_4:81484889-81484908 Msa0527210:intron 40.0%
AGGAATACAGATGTCCACAA+GGG + chr3_4:81485113-81485132 None:intergenic 40.0%
CATCTGTATTCCTGTGTGTA+AGG - chr3_4:81485120-81485139 Msa0527210:intron 40.0%
! TTGAACATCTGTTGGTTAGG+AGG + chr3_4:81485149-81485168 None:intergenic 40.0%
! GGTTTGAACATCTGTTGGTT+AGG + chr3_4:81485152-81485171 None:intergenic 40.0%
ATCAGAAAACTGCACTCTCA+GGG + chr3_4:81485181-81485200 None:intergenic 40.0%
AATCAGAAAACTGCACTCTC+AGG + chr3_4:81485182-81485201 None:intergenic 40.0%
GAAAGGACAAGAGAGAAAGA+CGG + chr3_4:81485415-81485434 None:intergenic 40.0%
TTGGTATAGGGATAAGGGAA+AGG + chr3_4:81485432-81485451 None:intergenic 40.0%
TGAGTCTTCCAATTTCTGAC+AGG - chr3_4:81485618-81485637 Msa0527210:intron 40.0%
GAGTCTTCCAATTTCTGACA+GGG - chr3_4:81485619-81485638 Msa0527210:intron 40.0%
AGTCTTCCAATTTCTGACAG+GGG - chr3_4:81485620-81485639 Msa0527210:intron 40.0%
!! GCATTACCATAAGGAGTACT+TGG + chr3_4:81485720-81485739 None:intergenic 40.0%
! CATGGCTTTTAATCCTTCGT+AGG - chr3_4:81485932-81485951 Msa0527210:intron 40.0%
TTTCAAGAGAACACCTACGA+AGG + chr3_4:81485948-81485967 None:intergenic 40.0%
CAGAATACGCCAGATATTGT+GGG - chr3_4:81486141-81486160 Msa0527210:intron 40.0%
TGCTTCAATCCCACAATATC+TGG + chr3_4:81486153-81486172 None:intergenic 40.0%
ATATTGTGGGATTGAAGCAC+TGG - chr3_4:81486154-81486173 Msa0527210:intron 40.0%
TTCAGCTCTTCAAAAGCTTC+AGG + chr3_4:81486260-81486279 None:intergenic 40.0%
GTTAGGTTTCTTCACACAAG+CGG - chr3_4:81486322-81486341 Msa0527210:CDS 40.0%
AGGTCCTGTACAAAACATTG+TGG - chr3_4:81486358-81486377 Msa0527210:CDS 40.0%
CAAGTTGTTGTGGAAAGGAT+CGG + chr3_4:81486393-81486412 None:intergenic 40.0%
! CTTTCCACAACAACTTGCTT+GGG - chr3_4:81486396-81486415 Msa0527210:intron 40.0%
! AGGAGTCCTTCATTTGTTGA+AGG - chr3_4:81486675-81486694 Msa0527210:CDS 40.0%
GAAGGCCTGTTGTTAATTAG+AGG + chr3_4:81486735-81486754 None:intergenic 40.0%
CTAAGAAAGGAGCTATGGTG+TGG - chr3_4:81482873-81482892 Msa0527210:three_prime_UTR 45.0%
CAAAGCAGTTTACAGAGGAG+AGG + chr3_4:81482970-81482989 None:intergenic 45.0%
GCAGATGAGATGTTGTGTTC+TGG + chr3_4:81483002-81483021 None:intergenic 45.0%
!! CTTTGAAGTGACTCCCCTAA+TGG + chr3_4:81483106-81483125 None:intergenic 45.0%
CTCCTCTAAATTCAAGGCTC+AGG - chr3_4:81483162-81483181 Msa0527210:three_prime_UTR 45.0%
AGCCTGAGCCTTGAATTTAG+AGG + chr3_4:81483167-81483186 None:intergenic 45.0%
! GCTTTTGGTATGGACAAGGT+CGG - chr3_4:81483299-81483318 Msa0527210:CDS 45.0%
CTTGGCCCTATTTCGTATGA+TGG - chr3_4:81483331-81483350 Msa0527210:CDS 45.0%
GGGTAGCCATCATACGAAAT+AGG + chr3_4:81483340-81483359 None:intergenic 45.0%
GGCTACCCATCATATCTCAT+TGG - chr3_4:81483352-81483371 Msa0527210:CDS 45.0%
ATGTCAAAGCCATAATCCCC+AGG + chr3_4:81483385-81483404 None:intergenic 45.0%
AAGTACCACCCAAGCCATTA+TGG - chr3_4:81483448-81483467 Msa0527210:CDS 45.0%
! CATAACCATAATGGCTTGGG+TGG + chr3_4:81483456-81483475 None:intergenic 45.0%
TTGAGATATTGCATGCTCGC+TGG - chr3_4:81483561-81483580 Msa0527210:intron 45.0%
TGAGATATTGCATGCTCGCT+GGG - chr3_4:81483562-81483581 Msa0527210:intron 45.0%
!! GACACTTTTCAGGATCAGCA+TGG + chr3_4:81483874-81483893 None:intergenic 45.0%
!! GCTGATCCTGAAAAGTGTCA+TGG - chr3_4:81483875-81483894 Msa0527210:intron 45.0%
! GAACTCCCATGACACTTTTC+AGG + chr3_4:81483884-81483903 None:intergenic 45.0%
TCAGTTAGCTATGCAGTGGT+AGG + chr3_4:81484184-81484203 None:intergenic 45.0%
GGAGATGACCAAATTCATGC+CGG + chr3_4:81484332-81484351 None:intergenic 45.0%
GTTAGTTATGCAGTGGTAGG+CGG + chr3_4:81484500-81484519 None:intergenic 45.0%
GGTGAACAGTACACATACCT+GGG + chr3_4:81484952-81484971 None:intergenic 45.0%
TGGTGAACAGTACACATACC+TGG + chr3_4:81484953-81484972 None:intergenic 45.0%
CAGGAATACAGATGTCCACA+AGG + chr3_4:81485114-81485133 None:intergenic 45.0%
ATCGGGGTTTGAACATCTGT+TGG + chr3_4:81485157-81485176 None:intergenic 45.0%
AAACTGCACTCTCAGGGAAT+CGG + chr3_4:81485175-81485194 None:intergenic 45.0%
!! TGTTAAGGGGCTAATGGACT+TGG - chr3_4:81485285-81485304 Msa0527210:intron 45.0%
!! GTTAAGGGGCTAATGGACTT+GGG - chr3_4:81485286-81485305 Msa0527210:intron 45.0%
GTCTTCCAATTTCTGACAGG+GGG - chr3_4:81485621-81485640 Msa0527210:intron 45.0%
AGTATCCCCCTGTCAGAAAT+TGG + chr3_4:81485629-81485648 None:intergenic 45.0%
GGGGATACTCTAGATTACCT+TGG - chr3_4:81485640-81485659 Msa0527210:intron 45.0%
TCACAGGACAAGGTGGATAA+TGG + chr3_4:81485749-81485768 None:intergenic 45.0%
! CATATGGGCTCAAAGAGTAC+TGG + chr3_4:81485811-81485830 None:intergenic 45.0%
CCACAATATCTGGCGTATTC+TGG + chr3_4:81486143-81486162 None:intergenic 45.0%
CCAGAATACGCCAGATATTG+TGG - chr3_4:81486140-81486159 Msa0527210:intron 45.0%
CCAGGCAGATATATTCCTAG+AGG + chr3_4:81486182-81486201 None:intergenic 45.0%
! CCTCTAGGAATATATCTGCC+TGG - chr3_4:81486179-81486198 Msa0527210:intron 45.0%
CCAGGGTAGTTTATATCACC+AGG + chr3_4:81486200-81486219 None:intergenic 45.0%
CCTGGTGATATAAACTACCC+TGG - chr3_4:81486197-81486216 Msa0527210:intron 45.0%
GGTGATATAAACTACCCTGG+AGG - chr3_4:81486200-81486219 Msa0527210:intron 45.0%
GATCAAACAATGCTCCTCCA+GGG + chr3_4:81486217-81486236 None:intergenic 45.0%
AAATGGACGCTTGGCAATGA+TGG - chr3_4:81486295-81486314 Msa0527210:CDS 45.0%
!! TTGGCAATGATGGCTTGGTT+AGG - chr3_4:81486305-81486324 Msa0527210:CDS 45.0%
CCAAGCAAGTTGTTGTGGAA+AGG + chr3_4:81486398-81486417 None:intergenic 45.0%
! CCTTTCCACAACAACTTGCT+TGG - chr3_4:81486395-81486414 Msa0527210:intron 45.0%
TGGGGCAAAGCAGTTTACAG+AGG + chr3_4:81482975-81482994 None:intergenic 50.0%
!! CTACCTCTGTTTTCTGGCCT+TGG + chr3_4:81483191-81483210 None:intergenic 50.0%
! CGGTCACTACCTCTGTTTTC+TGG + chr3_4:81483197-81483216 None:intergenic 50.0%
TATCTCATTGGGGAACTGCC+TGG - chr3_4:81483364-81483383 Msa0527210:CDS 50.0%
ATCTCATTGGGGAACTGCCT+GGG - chr3_4:81483365-81483384 Msa0527210:CDS 50.0%
TGGGCTATGCTTGCATCTGT+TGG - chr3_4:81483581-81483600 Msa0527210:intron 50.0%
! CGTTGGTTATTCCAAGCTCC+AGG - chr3_4:81483670-81483689 Msa0527210:intron 50.0%
GAACATGCTAACCTGGAGCT+TGG + chr3_4:81483684-81483703 None:intergenic 50.0%
GTTAGCTATGCAGTGGTAGG+CGG + chr3_4:81484181-81484200 None:intergenic 50.0%
GAACAGTACACATACCTGGG+AGG + chr3_4:81484949-81484968 None:intergenic 50.0%
AACTGCACTCTCAGGGAATC+GGG + chr3_4:81485174-81485193 None:intergenic 50.0%
CTAGATTACCTTGGCATCCC+AGG - chr3_4:81485649-81485668 Msa0527210:intron 50.0%
TTCCAGCTAAGTGAAGGCCT+GGG + chr3_4:81485669-81485688 None:intergenic 50.0%
CTTCACTTAGCTGGAAGCCA+GGG - chr3_4:81485673-81485692 Msa0527210:intron 50.0%
TAGCAATCACAACCACTCCC+TGG + chr3_4:81485693-81485712 None:intergenic 50.0%
TTAGCAGAGCTCACAGGACA+AGG + chr3_4:81485759-81485778 None:intergenic 50.0%
CAGTCATTTGCGTCTGCAGA+TGG - chr3_4:81486066-81486085 Msa0527210:CDS 50.0%
!! ATTGAAGCACTGGAGCCTCT+AGG - chr3_4:81486164-81486183 Msa0527210:intron 50.0%
GGATCAAACAATGCTCCTCC+AGG + chr3_4:81486218-81486237 None:intergenic 50.0%
GTGACCCAAGCAAGTTGTTG+TGG + chr3_4:81486403-81486422 None:intergenic 50.0%
! GCATTGATGCATTAGAGGCG+TGG - chr3_4:81486517-81486536 Msa0527210:CDS 50.0%
! CATGGCTGTTGTGCAGGTTT+TGG - chr3_4:81486540-81486559 Msa0527210:CDS 50.0%
!! AGGTTTTGGCGTGTGACAGT+AGG - chr3_4:81486554-81486573 Msa0527210:CDS 50.0%
!! TTGCGCAAGGGAGTTTTGTG+AGG - chr3_4:81486655-81486674 Msa0527210:CDS 50.0%
GCTTCATGGCAAGAGCTTGC+TGG - chr3_4:81483025-81483044 Msa0527210:three_prime_UTR 55.0%
ATTCAAGGCTCAGGCTGCCA+AGG - chr3_4:81483171-81483190 Msa0527210:three_prime_UTR 55.0%
CTGCCAAGGCCAGAAAACAG+AGG - chr3_4:81483185-81483204 Msa0527210:three_prime_UTR 55.0%
GAAATAGGGCCAAGCCAACG+AGG + chr3_4:81483325-81483344 None:intergenic 55.0%
TCTCATTGGGGAACTGCCTG+GGG - chr3_4:81483366-81483385 Msa0527210:CDS 55.0%
!! TGACATTGCTGGCCTTGCCA+AGG - chr3_4:81483399-81483418 Msa0527210:CDS 55.0%
GTTCCACTGGATCCTTGGCA+AGG + chr3_4:81483414-81483433 None:intergenic 55.0%
CTGCAGTTCCACTGGATCCT+TGG + chr3_4:81483419-81483438 None:intergenic 55.0%
TAACCAACGCGCCACCAAAC+AGG + chr3_4:81483659-81483678 None:intergenic 55.0%
AGAGGTTGTTTGCTCCTCCC+AGG - chr3_4:81484932-81484951 Msa0527210:intron 55.0%
TAGGAGGTCGCCTTACACAC+AGG + chr3_4:81485133-81485152 None:intergenic 55.0%
ACTGCACTCTCAGGGAATCG+GGG + chr3_4:81485173-81485192 None:intergenic 55.0%
ATCCCAGGCCTTCACTTAGC+TGG - chr3_4:81485664-81485683 Msa0527210:intron 55.0%
CTTCCAGCTAAGTGAAGGCC+TGG + chr3_4:81485670-81485689 None:intergenic 55.0%
CCTGGCTTCCAGCTAAGTGA+AGG + chr3_4:81485675-81485694 None:intergenic 55.0%
CCTTCACTTAGCTGGAAGCC+AGG - chr3_4:81485672-81485691 Msa0527210:intron 55.0%
GACGCTTGGCAATGATGGCT+TGG - chr3_4:81486300-81486319 Msa0527210:CDS 55.0%
! CTTCACACAAGCGGCACTGA+CGG - chr3_4:81486331-81486350 Msa0527210:CDS 55.0%
!! TTCACACAAGCGGCACTGAC+GGG - chr3_4:81486332-81486351 Msa0527210:CDS 55.0%
! GATGCATTAGAGGCGTGGCA+TGG - chr3_4:81486522-81486541 Msa0527210:CDS 55.0%
ATGGACAAGGTCGGCCTCGT+TGG - chr3_4:81483308-81483327 Msa0527210:CDS 60.0%
GGGGAACTGCCTGGGGATTA+TGG - chr3_4:81483373-81483392 Msa0527210:CDS 60.0%
! TGGCCTTGCCAAGGATCCAG+TGG - chr3_4:81483408-81483427 Msa0527210:CDS 60.0%
!! GAACCTGTTTGGTGGCGCGT+TGG - chr3_4:81483653-81483672 Msa0527210:intron 60.0%
AGTGAAGGCCTGGGATGCCA+AGG + chr3_4:81485660-81485679 None:intergenic 60.0%
CTTAGCTGGAAGCCAGGGAG+TGG - chr3_4:81485678-81485697 Msa0527210:intron 60.0%
GCAGAGCTCACAGGACAAGG+TGG + chr3_4:81485756-81485775 None:intergenic 60.0%
!! CAAGCGGCACTGACGGGTAA+AGG - chr3_4:81486338-81486357 Msa0527210:CDS 60.0%
! CAAGGTCGGCCTCGTTGGCT+TGG - chr3_4:81483313-81483332 Msa0527210:CDS 65.0%
GCGTGGCATGGCTGTTGTGC+AGG - chr3_4:81486534-81486553 Msa0527210:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 81482864 81486816 81482864 ID=Msa0527210;Name=Msa0527210
chr3_4 mRNA 81482864 81486816 81482864 ID=Msa0527210-mRNA-1;Parent=Msa0527210;Name=Msa0527210-mRNA-1;_AED=0.17;_eAED=0.17;_QI=23|1|1|1|1|1|5|371|335
chr3_4 exon 81482864 81483546 81482864 ID=Msa0527210-mRNA-1:exon:24580;Parent=Msa0527210-mRNA-1
chr3_4 exon 81483948 81484040 81483948 ID=Msa0527210-mRNA-1:exon:24579;Parent=Msa0527210-mRNA-1
chr3_4 exon 81485989 81486121 81485989 ID=Msa0527210-mRNA-1:exon:24578;Parent=Msa0527210-mRNA-1
chr3_4 exon 81486231 81486380 81486231 ID=Msa0527210-mRNA-1:exon:24577;Parent=Msa0527210-mRNA-1
chr3_4 exon 81486474 81486816 81486474 ID=Msa0527210-mRNA-1:exon:24576;Parent=Msa0527210-mRNA-1
chr3_4 five_prime_UTR 81486794 81486816 81486794 ID=Msa0527210-mRNA-1:five_prime_utr;Parent=Msa0527210-mRNA-1
chr3_4 CDS 81486474 81486793 81486474 ID=Msa0527210-mRNA-1:cds;Parent=Msa0527210-mRNA-1
chr3_4 CDS 81486231 81486380 81486231 ID=Msa0527210-mRNA-1:cds;Parent=Msa0527210-mRNA-1
chr3_4 CDS 81485989 81486121 81485989 ID=Msa0527210-mRNA-1:cds;Parent=Msa0527210-mRNA-1
chr3_4 CDS 81483948 81484040 81483948 ID=Msa0527210-mRNA-1:cds;Parent=Msa0527210-mRNA-1
chr3_4 CDS 81483235 81483546 81483235 ID=Msa0527210-mRNA-1:cds;Parent=Msa0527210-mRNA-1
chr3_4 three_prime_UTR 81482864 81483234 81482864 ID=Msa0527210-mRNA-1:three_prime_utr;Parent=Msa0527210-mRNA-1
Gene Sequence

>Msa0527210

ATGGTGTGGCTTCAACTTCAATCAGTGACGTGTCCTTCCTCTTCTTCATCTTGTTTCGTTAGTGGCTCTAGTCGCTGCTCCCTCTCCTCTGTAAACTGCTTTGCCCCAAAACCCAGAACACAACATCTCATCTGCAATGCTTCATGGCAAGAGCTTGCTGGAGTTTTACTATTCTCAGCGATTCCTTTCACTGCTGTCAAAGCTATAGCTAACAGTCCATTAGGGGAGTCACTTCAAAGAAAAATGGAAGAGACTAAGCAACTTGCTGTACAAAACTCCTCTAAATTCAAGGCTCAGGCTGCCAAGGCCAGAAAACAGAGCTTTTGGTATGGACAAGGTCGGCCTCGTTGGCTTGGCCCTATTTCGTATGATGGCTACCCATCATATCTCATTGGGGAACTGCCTGGGGATTATGGCTTTGACATTGCTGGCCTTGCCAAGGATCCAGTGGAACTGCAGAAATATTTCAACTTTGAGATATTGCATGCTCGCTGGGCTATGCTTGCATCTGTTGGTGCTCTCATTCCTGAGTTATTAGACCTATTGGGAGTCTTTCACTTTGTTGAACCTGTTTGGTGGCGCGTTGGTTATTCCAAGCTCCAGGGGGATACTCTAGATTACCTTGGCATCCCAGGCCTTCACTTAGCTGGAAGCCAGGGAGTGGTTGTGATTGCTATTTGCCAAGTACTCCTTATGGTTGGACCAGAATACGCCAGATATTGTGGGATTGAAGCACTGGAGCCTCTAGGAATATATCTGCCTGGTGATATAAACTACCCTGGAGGAGCATTGTTTGATCCCTTAAATCTGTCCAAAGATCCTGAAGCTTTTGAAGAGCTGAAAGTGAAAGAAATAAAAAATGGACGCTTGGCAATGATGGCTTGGTTAGGTTTCTTCACACAAGCGGCACTGACGGGTAAAGGTCCTGTACAAAACATTGTGGATCATATCTCCGATCCTTTCCACAACAACTTGCTTGGGTCACTCAATTCAATGAAATTACACTAG

Protein sequence

>Msa0527210

MVWLQLQSVTCPSSSSSCFVSGSSRCSLSSVNCFAPKPRTQHLICNASWQELAGVLLFSAIPFTAVKAIANSPLGESLQRKMEETKQLAVQNSSKFKAQAAKARKQSFWYGQGRPRWLGPISYDGYPSYLIGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAMLASVGALIPELLDLLGVFHFVEPVWWRVGYSKLQGDTLDYLGIPGLHLAGSQGVVVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFEELKVKEIKNGRLAMMAWLGFFTQAALTGKGPVQNIVDHISDPFHNNLLGSLNSMKLH*