AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0750490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0750490 MtrunA17_Chr5g0395851 95.406 283 3 2 1 283 1 273 0.0 536
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0750490 AT5G17170.1 75.918 245 48 4 39 283 38 271 3.42e-126 360
Msa0750490 AT5G17170.2 73.292 161 41 2 39 199 38 196 1.84e-74 227
Msa0750490 AT5G51010.1 32.432 111 52 3 188 280 44 149 2.13e-11 61.2

Find 115 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAGAATCATTATTCATTT+TGG 0.134462 5_2:-3921309 Msa0750490:CDS
ATTGGACTTGTGGCTGGTTT+AGG 0.164794 5_2:-3920640 Msa0750490:CDS
ACCTGGTCATCAAAAGATTT+TGG 0.172641 5_2:+3921114 None:intergenic
CCTCCAATTGGAGTTATTAT+TGG 0.179719 5_2:-3920658 Msa0750490:CDS
TTGGACTTGTGGCTGGTTTA+GGG 0.187713 5_2:-3920639 Msa0750490:CDS
CTTCTTTGGTGCTTGACATT+GGG 0.228557 5_2:+3920735 None:intergenic
GAAGCCAAAAGGGGTGTTTC+AGG 0.237048 5_2:-3922713 Msa0750490:CDS
CGAGGAGGAGCAGGACGTTT+TGG 0.239182 5_2:+3921363 None:intergenic
GGCCAGATGGTGAGGTTCTT+TGG 0.291144 5_2:-3923325 Msa0750490:five_prime_UTR
CAACACCGCCACCATTCTTT+TGG 0.291572 5_2:+3922558 None:intergenic
TCTAACACTCACTCTTCTAT+TGG 0.292576 5_2:+3920283 None:intergenic
CTATATACTAGCAGTTTCTT+TGG 0.295714 5_2:-3922212 Msa0750490:CDS
CACAGATCACACAATTAAAA+AGG 0.297366 5_2:-3923199 Msa0750490:five_prime_UTR
GTTTCTTTGGAGATGAATTA+TGG 0.304420 5_2:-3922199 Msa0750490:CDS
TACTCAGCAAACCTCTTCTT+TGG 0.321989 5_2:+3920721 None:intergenic
TTCAAAAGAATCAGTTGTTT+TGG 0.328968 5_2:-3923128 Msa0750490:five_prime_UTR
GGATCCTGAAACACCCCTTT+TGG 0.340292 5_2:+3922709 None:intergenic
GTCCTGCTCCTCCTCGCTTC+GGG 0.350568 5_2:-3921356 Msa0750490:CDS
CGTCCTGCTCCTCCTCGCTT+CGG 0.368149 5_2:-3921357 Msa0750490:CDS
AATTTGCACATATGCAATAA+AGG 0.375480 5_2:+3920501 None:intergenic
TATCTTCTTTAGGCTGTTGA+AGG 0.389713 5_2:-3922281 Msa0750490:intron
GGTGGAGGGTTGCCTCCAAT+TGG 0.394086 5_2:-3920670 Msa0750490:CDS
AGCTTAGTTGAGTTGGTGTT+AGG 0.397535 5_2:+3923231 None:intergenic
ATTGCATATGTGCAAATTGA+AGG 0.403876 5_2:-3920496 Msa0750490:three_prime_UTR
GTGCTGATGTAGATGTTAAA+AGG 0.409204 5_2:-3921389 Msa0750490:CDS
CTCACTTCATGAAGCCAAAA+GGG 0.416237 5_2:-3922723 Msa0750490:CDS
TCTTCTTTGGTGCTTGACAT+TGG 0.416965 5_2:+3920734 None:intergenic
CTAACACTCACTCTTCTATT+GGG 0.422967 5_2:+3920284 None:intergenic
ATTCCAAGGTTGGACAACTT+TGG 0.424659 5_2:+3920540 None:intergenic
GTGGCTGGTTTAGGGGCTGT+TGG 0.432164 5_2:-3920631 Msa0750490:CDS
ACCATGTCAGCTATGGTTGC+AGG 0.435247 5_2:-3923074 Msa0750490:CDS
AGTCCAATAATAACTCCAAT+TGG 0.436833 5_2:+3920655 None:intergenic
GCAAGAGCAGGGTTAAAGTC+AGG 0.440054 5_2:-3922245 Msa0750490:CDS
GTTATTATTGGACTTGTGGC+TGG 0.444557 5_2:-3920646 Msa0750490:CDS
CTCCCGAAGCGAGGAGGAGC+AGG 0.447605 5_2:+3921354 None:intergenic
CTGTCTACTTTGTTGTCAGC+AGG 0.450428 5_2:-3922124 Msa0750490:intron
GAGATCACTGCAAGAACTGC+TGG 0.452185 5_2:-3922635 Msa0750490:CDS
GGAGGGAATGCAGCAAGAGC+AGG 0.457313 5_2:-3922257 Msa0750490:CDS
GTGGGACTCACCACTTTATG+TGG 0.458423 5_2:+3920317 None:intergenic
CTTTAGGCTGTTGAAGGTGG+AGG 0.458505 5_2:-3922275 Msa0750490:intron
AGAATGTTTCTAGCATTTCT+CGG 0.459159 5_2:-3920245 Msa0750490:three_prime_UTR
TTCTTTGGTGCTTGACATTG+GGG 0.463539 5_2:+3920736 None:intergenic
GAATGTTTCTAGCATTTCTC+GGG 0.463609 5_2:-3920244 None:intergenic
CACCAAAGAACCTCACCATC+TGG 0.464799 5_2:+3923323 None:intergenic
CTTCTTTAGGCTGTTGAAGG+TGG 0.466334 5_2:-3922278 Msa0750490:intron
TCTCACTTCATGAAGCCAAA+AGG 0.467074 5_2:-3922724 Msa0750490:CDS
AAGTCTCTTTCTAGCAATAG+AGG 0.469942 5_2:+3922658 None:intergenic
GACACTCACTCCTCCATGTC+AGG 0.476168 5_2:-3922982 Msa0750490:CDS
AAGGCAAATGTGAGTAGCTC+TGG 0.479447 5_2:+3921161 None:intergenic
AAGCCACTTGGTCTCACCTT+AGG 0.480037 5_2:-3922581 Msa0750490:CDS
GTTAACACAGGAAGAGCTAT+TGG 0.480695 5_2:-3920694 Msa0750490:CDS
ACAACAAAGTAGACAGAGTC+AGG 0.485537 5_2:+3922131 None:intergenic
TGAGATACAAATTCCAAGGT+TGG 0.488440 5_2:+3920530 None:intergenic
GTGAATCCAAGTTTATCTGC+TGG 0.494450 5_2:+3922176 None:intergenic
AAAATGAATCCCACATAAAG+TGG 0.495336 5_2:-3920327 Msa0750490:three_prime_UTR
AGCCACAAGCTTAGTTGAGT+TGG 0.498671 5_2:+3923224 None:intergenic
ATGGTTCCTTGTGGATAGAA+AGG 0.505299 5_2:+3923092 None:intergenic
AAAATTGACTGAGACTCAAA+AGG 0.506048 5_2:-3921331 Msa0750490:CDS
GGTGTTTCAGGATCCTTCCT+AGG 0.507560 5_2:-3922701 Msa0750490:CDS
TTATGGCCAGCAGATAAACT+TGG 0.511736 5_2:-3922182 Msa0750490:CDS
ATTTCACTCGATAAGAGAAT+AGG 0.513373 5_2:+3920364 None:intergenic
AACTGCTAGTATATAGAACT+TGG 0.513842 5_2:+3922219 None:intergenic
TGGTGGCGGTGTTGTTATAA+CGG 0.514700 5_2:-3922549 Msa0750490:intron
GGAAGAGCTATTGGTGGTGG+AGG 0.514930 5_2:-3920685 Msa0750490:CDS
TGGACTTGTGGCTGGTTTAG+GGG 0.521175 5_2:-3920638 Msa0750490:CDS
TGGGGACAACTATATGTGTC+CGG 0.538115 5_2:+3920754 None:intergenic
TTTAGGCTGTTGAAGGTGGA+GGG 0.538963 5_2:-3922274 Msa0750490:intron
AAAACTAACTGTGATAATTG+AGG 0.540317 5_2:-3920423 Msa0750490:three_prime_UTR
CACTCCTCCATGTCAGGTAC+AGG 0.542691 5_2:-3922976 Msa0750490:intron
CTGCAGAAAACATCTTTGCT+AGG 0.543050 5_2:-3922749 Msa0750490:intron
CCAATAATAACTCCAATTGG+AGG 0.544692 5_2:+3920658 None:intergenic
ACAGGAAGAGCTATTGGTGG+TGG 0.551544 5_2:-3920688 Msa0750490:CDS
TTTCTGAGATACAAATTCCA+AGG 0.554244 5_2:+3920526 None:intergenic
ACAAGGAACCATGTCAGCTA+TGG 0.558535 5_2:-3923081 Msa0750490:exon
ACTCCAAAGTTGTCCAACCT+TGG 0.560163 5_2:-3920543 Msa0750490:three_prime_UTR
TTCCTTGTGGATAGAAAGGA+AGG 0.560220 5_2:+3923096 None:intergenic
TGGAGTTATTATTGGACTTG+TGG 0.561374 5_2:-3920650 Msa0750490:CDS
TTCAAAGACAATTGAAGCTG+AGG 0.563353 5_2:-3922609 Msa0750490:CDS
CCTTGTGGTGAAAGTGGCAG+AGG 0.564639 5_2:+3923046 None:intergenic
CGGCTTGAGGCCAGATGGTG+AGG 0.565975 5_2:-3923333 Msa0750490:five_prime_UTR
CAAGAGCAGGGTTAAAGTCA+GGG 0.567341 5_2:-3922244 Msa0750490:CDS
CTCACCTTAGGCCAAAAGAA+TGG 0.568349 5_2:-3922569 Msa0750490:CDS
TTCCTTCCTTTCTATCCACA+AGG 0.570238 5_2:-3923098 Msa0750490:five_prime_UTR
GCTGAGGTTGACAAGCCACT+TGG 0.570324 5_2:-3922593 Msa0750490:CDS
AACAGTACCTGTACCTGACA+TGG 0.584886 5_2:+3922969 None:intergenic
GTTACTCCTTGTGGTGAAAG+TGG 0.585891 5_2:+3923040 None:intergenic
TTCCTAGGTGACAACAAAAG+TGG 0.586607 5_2:-3922686 Msa0750490:CDS
ACCTGCAACCATAGCTGACA+TGG 0.586903 5_2:+3923073 None:intergenic
AATGTCAAGCACCAAAGAAG+AGG 0.589836 5_2:-3920732 Msa0750490:CDS
GATGGAGTGGTTACTCCTTG+TGG 0.593369 5_2:+3923031 None:intergenic
CACCAACTCAACTAAGCTTG+TGG 0.596840 5_2:-3923226 Msa0750490:five_prime_UTR
AAGAGCAGGGTTAAAGTCAG+GGG 0.598127 5_2:-3922243 Msa0750490:CDS
ATGTGTATAAAGCATGCAAG+AGG 0.599952 5_2:+3923155 None:intergenic
TGGGACTCACCACTTTATGT+GGG 0.604299 5_2:+3920318 None:intergenic
TGGCCTAAGGTGAGACCAAG+TGG 0.607786 5_2:+3922578 None:intergenic
TGTGGTGAAAGTGGCAGAGG+AGG 0.609801 5_2:+3923049 None:intergenic
AGTATATGTATCCACAGTCA+AGG 0.610259 5_2:+3921142 None:intergenic
ACATGGAGGAGTGAGTGTCT+TGG 0.612341 5_2:+3922986 None:intergenic
GAGGGAATGCAGCAAGAGCA+GGG 0.612440 5_2:-3922256 Msa0750490:CDS
GAAGAGCTATTGGTGGTGGA+GGG 0.622209 5_2:-3920684 Msa0750490:CDS
GCTGAGTATGATGTTAACAC+AGG 0.623493 5_2:-3920706 Msa0750490:CDS
TTAGGCCAAAAGAATGGTGG+CGG 0.624691 5_2:-3922563 Msa0750490:CDS
ACTCACATTTGCCTTGACTG+TGG 0.627650 5_2:-3921153 Msa0750490:CDS
ATAGCTGACATGGTTCCTTG+TGG 0.631401 5_2:+3923083 None:intergenic
CCTCTGCCACTTTCACCACA+AGG 0.635741 5_2:-3923046 Msa0750490:CDS
TCACTTCATGAAGCCAAAAG+GGG 0.637786 5_2:-3922722 Msa0750490:CDS
TAGAACGGCTTGAGGCCAGA+TGG 0.640150 5_2:-3923338 Msa0750490:five_prime_UTR
GGAGGAGTGAGTGTCTTGGA+AGG 0.643383 5_2:+3922990 None:intergenic
AACACAGGAAGAGCTATTGG+TGG 0.646702 5_2:-3920691 Msa0750490:CDS
ACCTTAGGCCAAAAGAATGG+TGG 0.660294 5_2:-3922566 Msa0750490:CDS
CTATTGGGTGAAAACCATGT+GGG 0.660941 5_2:+3920299 None:intergenic
ATACAACATAGAACGGCTTG+AGG 0.666102 5_2:-3923346 None:intergenic
TCTATTGGGTGAAAACCATG+TGG 0.671909 5_2:+3920298 None:intergenic
ATAAAGTGGTGAGTCCCACA+TGG 0.673249 5_2:-3920313 Msa0750490:three_prime_UTR
AGTACCTGTACCTGACATGG+AGG 0.723011 5_2:+3922972 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTAAATTTGAAATTTTAT+AGG + chr5_2:3921585-3921604 None:intergenic 10.0%
!! AAATTGAATAAAATTTATGT+AGG - chr5_2:3921698-3921717 Msa0750490:intron 10.0%
!! AATTGAATAAAATTTATGTA+GGG - chr5_2:3921699-3921718 Msa0750490:intron 10.0%
!! AAAAAAAAAATATACATGTT+GGG + chr5_2:3922589-3922608 None:intergenic 10.0%
!! TAAAAAAAAAATATACATGT+TGG + chr5_2:3922590-3922609 None:intergenic 10.0%
!!! AAGAAAGATAATATGTTTTT+GGG + chr5_2:3920298-3920317 None:intergenic 15.0%
!!! AAAGAAAGATAATATGTTTT+TGG + chr5_2:3920299-3920318 None:intergenic 15.0%
!!! CCTACTTTTATTAATTTTTA+CGG + chr5_2:3921674-3921693 None:intergenic 15.0%
!! CGTAAAAATTAATAAAAGTA+GGG - chr5_2:3921672-3921691 Msa0750490:intron 15.0%
!! AATAAGATATAGAAAATTGA+TGG - chr5_2:3921873-3921892 Msa0750490:intron 15.0%
!!! TAAACTTTTTATATATGTGA+TGG + chr5_2:3922496-3922515 None:intergenic 15.0%
!!! AATGACAACATTGATTTAAT+GGG + chr5_2:3921076-3921095 None:intergenic 20.0%
!!! TTGTTCAATTTGATTTCATA+AGG - chr5_2:3921617-3921636 Msa0750490:intron 20.0%
!! CCGTAAAAATTAATAAAAGT+AGG - chr5_2:3921671-3921690 Msa0750490:intron 20.0%
!!! TTTTGTAGCAATAACAATAA+GGG + chr5_2:3921781-3921800 None:intergenic 20.0%
!!! ATTTTGTAGCAATAACAATA+AGG + chr5_2:3921782-3921801 None:intergenic 20.0%
!! AACCATTCAATTATGTAAAA+TGG + chr5_2:3922368-3922387 None:intergenic 20.0%
!! ATATAAAAGATAAAGTCTCT+TGG + chr5_2:3922533-3922552 None:intergenic 20.0%
!!! AGATGATTTTAGATTAAAGT+TGG - chr5_2:3922747-3922766 Msa0750490:intron 20.0%
!!! AATTATCACAGTTAGTTTTT+AGG + chr5_2:3923156-3923175 None:intergenic 20.0%
!!! AAAGATAATATGTTTTTGGG+TGG + chr5_2:3920295-3920314 None:intergenic 25.0%
!! TTCAAAAGAATCAGTTGTTT+TGG - chr5_2:3920452-3920471 Msa0750490:three_prime_UTR 25.0%
!! TTTTCTTTGCATGATTACTT+CGG - chr5_2:3920635-3920654 Msa0750490:CDS 25.0%
! ATCATTTGAATTCAACTAGT+TGG - chr5_2:3920747-3920766 Msa0750490:CDS 25.0%
!!! CAATGACAACATTGATTTAA+TGG + chr5_2:3921077-3921096 None:intergenic 25.0%
! CATTAAATCAATGTTGTCAT+TGG - chr5_2:3921075-3921094 Msa0750490:intron 25.0%
! ATTTCACCACTATATATACA+AGG + chr5_2:3921837-3921856 None:intergenic 25.0%
! TTGTATATATAGTGGTGAAA+TGG - chr5_2:3921836-3921855 Msa0750490:intron 25.0%
! TGTATATATAGTGGTGAAAT+GGG - chr5_2:3921837-3921856 Msa0750490:intron 25.0%
! TGGTAAGACTAAAATAAGTT+CGG - chr5_2:3921893-3921912 Msa0750490:intron 25.0%
! AAGTAACTGATAAACAGAAT+AGG + chr5_2:3922114-3922133 None:intergenic 25.0%
! ACAAAAACATGAAAATAGTC+AGG + chr5_2:3922159-3922178 None:intergenic 25.0%
!!! TTCATGTTTTTGTTATGAAG+AGG - chr5_2:3922166-3922185 Msa0750490:CDS 25.0%
!! GCAAGAATCATTATTCATTT+TGG - chr5_2:3922271-3922290 Msa0750490:CDS 25.0%
!! GTCCATTTTACATAATTGAA+TGG - chr5_2:3922363-3922382 Msa0750490:intron 25.0%
! TTAAAATGTCTGACATGTAT+TGG - chr5_2:3922607-3922626 Msa0750490:CDS 25.0%
! AATTTGCACATATGCAATAA+AGG + chr5_2:3923082-3923101 None:intergenic 25.0%
! AAAACTAACTGTGATAATTG+AGG - chr5_2:3923157-3923176 Msa0750490:five_prime_UTR 25.0%
!! CTTTTTAATTGTGTGATCTG+TGG + chr5_2:3920383-3920402 None:intergenic 30.0%
CACAGATCACACAATTAAAA+AGG - chr5_2:3920381-3920400 Msa0750490:three_prime_UTR 30.0%
AATTCAACTAGTTGGTTAGT+TGG - chr5_2:3920755-3920774 Msa0750490:CDS 30.0%
ATCAACCTGAAATGAAATGT+CGG + chr5_2:3921118-3921137 None:intergenic 30.0%
AGATGCGTATTATCTTCTTT+AGG - chr5_2:3921289-3921308 Msa0750490:intron 30.0%
AACTGCTAGTATATAGAACT+TGG + chr5_2:3921364-3921383 None:intergenic 30.0%
CTATATACTAGCAGTTTCTT+TGG - chr5_2:3921368-3921387 Msa0750490:CDS 30.0%
! GTTTCTTTGGAGATGAATTA+TGG - chr5_2:3921381-3921400 Msa0750490:CDS 30.0%
!!! TGACATAGGTTAGTTTTTGT+TGG - chr5_2:3921541-3921560 Msa0750490:intron 30.0%
!!! GACATAGGTTAGTTTTTGTT+GGG - chr5_2:3921542-3921561 Msa0750490:intron 30.0%
!!! TGAAAAGGTCGTAGTTTTAT+AGG - chr5_2:3921729-3921748 Msa0750490:intron 30.0%
!!! GAAAAGGTCGTAGTTTTATA+GGG - chr5_2:3921730-3921749 Msa0750490:intron 30.0%
ACACTTCCTTGTATATATAG+TGG - chr5_2:3921828-3921847 Msa0750490:intron 30.0%
!!! TTTTTTCTCTCTCTTTCACA+AGG + chr5_2:3921973-3921992 None:intergenic 30.0%
!! ATGTTTTTGTTATGAAGAGG+TGG - chr5_2:3922169-3922188 Msa0750490:CDS 30.0%
AAAATTGACTGAGACTCAAA+AGG - chr5_2:3922249-3922268 Msa0750490:CDS 30.0%
GATGACAAATAAATGCTACT+AGG + chr5_2:3922331-3922350 None:intergenic 30.0%
!! GTCTCTTGGCAATTATTTTT+AGG + chr5_2:3922519-3922538 None:intergenic 30.0%
AAAGTTGGATTATCAACATC+TGG - chr5_2:3922762-3922781 Msa0750490:intron 30.0%
ATTATTTATGTCATTGCAGC+CGG - chr5_2:3922807-3922826 Msa0750490:intron 30.0%
AGTCCAATAATAACTCCAAT+TGG + chr5_2:3922928-3922947 None:intergenic 30.0%
!! TTTCTGAGATACAAATTCCA+AGG + chr5_2:3923057-3923076 None:intergenic 30.0%
ATTGCATATGTGCAAATTGA+AGG - chr5_2:3923084-3923103 Msa0750490:exon 30.0%
ATTTCACTCGATAAGAGAAT+AGG + chr5_2:3923219-3923238 None:intergenic 30.0%
AAAATGAATCCCACATAAAG+TGG - chr5_2:3923253-3923272 Msa0750490:five_prime_UTR 30.0%
!!! CATGCAAGAGGAGTTTTTTT+GGG + chr5_2:3920416-3920435 None:intergenic 35.0%
ATGTGTATAAAGCATGCAAG+AGG + chr5_2:3920428-3920447 None:intergenic 35.0%
TCCATCAAAAACACTCACAT+CGG - chr5_2:3920566-3920585 Msa0750490:three_prime_UTR 35.0%
! AAGTCTCTTTCTAGCAATAG+AGG + chr5_2:3920925-3920944 None:intergenic 35.0%
TTCAAAGACAATTGAAGCTG+AGG - chr5_2:3920971-3920990 Msa0750490:intron 35.0%
!! GACATTTCATTTCAGGTTGA+TGG - chr5_2:3921117-3921136 Msa0750490:CDS 35.0%
TATCTTCTTTAGGCTGTTGA+AGG - chr5_2:3921299-3921318 Msa0750490:intron 35.0%
GAACAGAGTTTAGTTGCAAA+AGG + chr5_2:3921492-3921511 None:intergenic 35.0%
AAGGGATGCAATTAAGGAAA+TGG + chr5_2:3921514-3921533 None:intergenic 35.0%
ATTTCATAAGGACTAAACGC+AGG - chr5_2:3921629-3921648 Msa0750490:intron 35.0%
ATGTAGGGACTAAACTGAAA+AGG - chr5_2:3921714-3921733 Msa0750490:intron 35.0%
!! TATACAAGGAAGTGTTGCAA+GGG + chr5_2:3921823-3921842 None:intergenic 35.0%
!! ATATACAAGGAAGTGTTGCA+AGG + chr5_2:3921824-3921843 None:intergenic 35.0%
! TGACATAGAATTGGTGACAT+TGG + chr5_2:3922032-3922051 None:intergenic 35.0%
GATTGCATACTGAACTTACT+GGG + chr5_2:3922055-3922074 None:intergenic 35.0%
AGATTGCATACTGAACTTAC+TGG + chr5_2:3922056-3922075 None:intergenic 35.0%
! TGTGTATGAAGAGTATACTG+TGG - chr5_2:3922086-3922105 Msa0750490:intron 35.0%
! GTGCTGATGTAGATGTTAAA+AGG - chr5_2:3922191-3922210 Msa0750490:CDS 35.0%
AGTATATGTATCCACAGTCA+AGG + chr5_2:3922441-3922460 None:intergenic 35.0%
!! ACCAAAATCTTTTGATGACC+AGG - chr5_2:3922465-3922484 Msa0750490:intron 35.0%
! ACCTGGTCATCAAAAGATTT+TGG + chr5_2:3922469-3922488 None:intergenic 35.0%
!! ATATATGTGATGGACTTACC+TGG + chr5_2:3922486-3922505 None:intergenic 35.0%
TTGAATGTAACCACATTCGT+TGG + chr5_2:3922653-3922672 None:intergenic 35.0%
CCAATAATAACTCCAATTGG+AGG + chr5_2:3922925-3922944 None:intergenic 35.0%
CCTCCAATTGGAGTTATTAT+TGG - chr5_2:3922922-3922941 Msa0750490:intron 35.0%
TGGAGTTATTATTGGACTTG+TGG - chr5_2:3922930-3922949 Msa0750490:intron 35.0%
TGAGATACAAATTCCAAGGT+TGG + chr5_2:3923053-3923072 None:intergenic 35.0%
CTAACACTCACTCTTCTATT+GGG + chr5_2:3923299-3923318 None:intergenic 35.0%
TCTAACACTCACTCTTCTAT+TGG + chr5_2:3923300-3923319 None:intergenic 35.0%
!! AGCTTAGTTGAGTTGGTGTT+AGG + chr5_2:3920352-3920371 None:intergenic 40.0%
!!! GCATGCAAGAGGAGTTTTTT+TGG + chr5_2:3920417-3920436 None:intergenic 40.0%
TTCCTTCCTTTCTATCCACA+AGG - chr5_2:3920482-3920501 Msa0750490:three_prime_UTR 40.0%
TTCCTTGTGGATAGAAAGGA+AGG + chr5_2:3920487-3920506 None:intergenic 40.0%
ATGGTTCCTTGTGGATAGAA+AGG + chr5_2:3920491-3920510 None:intergenic 40.0%
!! TGTGAGTGTTTTTGATGGAG+TGG + chr5_2:3920565-3920584 None:intergenic 40.0%
!! TCCGATGTGAGTGTTTTTGA+TGG + chr5_2:3920570-3920589 None:intergenic 40.0%
CTTTGCATGATTACTTCGGT+CGG - chr5_2:3920639-3920658 Msa0750490:CDS 40.0%
CTGCAGAAAACATCTTTGCT+AGG - chr5_2:3920831-3920850 Msa0750490:intron 40.0%
!!! TTTTGGCTTCATGAAGTGAG+AGG + chr5_2:3920857-3920876 None:intergenic 40.0%
TCTCACTTCATGAAGCCAAA+AGG - chr5_2:3920856-3920875 Msa0750490:intron 40.0%
CTCACTTCATGAAGCCAAAA+GGG - chr5_2:3920857-3920876 Msa0750490:intron 40.0%
TCACTTCATGAAGCCAAAAG+GGG - chr5_2:3920858-3920877 Msa0750490:intron 40.0%
!! ACTTTTGTTGTCACCTAGGA+AGG + chr5_2:3920895-3920914 None:intergenic 40.0%
TTCCTAGGTGACAACAAAAG+TGG - chr5_2:3920894-3920913 Msa0750490:intron 40.0%
!! AACCACTTTTGTTGTCACCT+AGG + chr5_2:3920899-3920918 None:intergenic 40.0%
!! TTTCAGGTTGATGGCATGTT+TGG - chr5_2:3921126-3921145 Msa0750490:CDS 40.0%
!! TCGGTGCTTTCTGGTTTAAA+GGG - chr5_2:3921244-3921263 Msa0750490:intron 40.0%
TTATGGCCAGCAGATAAACT+TGG - chr5_2:3921398-3921417 Msa0750490:intron 40.0%
GTGAATCCAAGTTTATCTGC+TGG + chr5_2:3921407-3921426 None:intergenic 40.0%
ACAACAAAGTAGACAGAGTC+AGG + chr5_2:3921452-3921471 None:intergenic 40.0%
CAACAGAAGGGATGCAATTA+AGG + chr5_2:3921520-3921539 None:intergenic 40.0%
AACCTATGTCAGCAACAGAA+GGG + chr5_2:3921532-3921551 None:intergenic 40.0%
TAACCTATGTCAGCAACAGA+AGG + chr5_2:3921533-3921552 None:intergenic 40.0%
!! ATACAAGGAAGTGTTGCAAG+GGG + chr5_2:3921822-3921841 None:intergenic 40.0%
! TGACGTAGAATTGGTGACAT+TGG - chr5_2:3921928-3921947 Msa0750490:intron 40.0%
AAGGATCGTGACATTGTGAT+TGG + chr5_2:3921954-3921973 None:intergenic 40.0%
GCCACTTGTAACATTGTGAT+TGG - chr5_2:3921997-3922016 Msa0750490:intron 40.0%
GCCAATCACAATGTTACAAG+TGG + chr5_2:3922001-3922020 None:intergenic 40.0%
! ATTGGTGACATTGGTGACAT+TGG + chr5_2:3922023-3922042 None:intergenic 40.0%
CTTACTGGGTGACATAGAAT+TGG + chr5_2:3922041-3922060 None:intergenic 40.0%
! TGTCTGACATGTATTGGTGT+CGG - chr5_2:3922613-3922632 Msa0750490:CDS 40.0%
CACATTCGTTGGTATCATGT+TGG + chr5_2:3922642-3922661 None:intergenic 40.0%
CAACATGATACCAACGAATG+TGG - chr5_2:3922640-3922659 Msa0750490:CDS 40.0%
ATTTCTACATGTGTCGTACC+TGG - chr5_2:3922692-3922711 Msa0750490:CDS 40.0%
!! TTCTTTGGTGCTTGACATTG+GGG + chr5_2:3922847-3922866 None:intergenic 40.0%
!! CTTCTTTGGTGCTTGACATT+GGG + chr5_2:3922848-3922867 None:intergenic 40.0%
!! TCTTCTTTGGTGCTTGACAT+TGG + chr5_2:3922849-3922868 None:intergenic 40.0%
AATGTCAAGCACCAAAGAAG+AGG - chr5_2:3922848-3922867 Msa0750490:intron 40.0%
TACTCAGCAAACCTCTTCTT+TGG + chr5_2:3922862-3922881 None:intergenic 40.0%
GCTGAGTATGATGTTAACAC+AGG - chr5_2:3922874-3922893 Msa0750490:intron 40.0%
GTTAACACAGGAAGAGCTAT+TGG - chr5_2:3922886-3922905 Msa0750490:intron 40.0%
GTTATTATTGGACTTGTGGC+TGG - chr5_2:3922934-3922953 Msa0750490:intron 40.0%
!! GTTGGAGCTTTGCTTGTTTT+TGG - chr5_2:3922967-3922986 Msa0750490:intron 40.0%
ATTCCAAGGTTGGACAACTT+TGG + chr5_2:3923043-3923062 None:intergenic 40.0%
CTATTGGGTGAAAACCATGT+GGG + chr5_2:3923284-3923303 None:intergenic 40.0%
TCTATTGGGTGAAAACCATG+TGG + chr5_2:3923285-3923304 None:intergenic 40.0%
CACCAACTCAACTAAGCTTG+TGG - chr5_2:3920354-3920373 Msa0750490:three_prime_UTR 45.0%
AGCCACAAGCTTAGTTGAGT+TGG + chr5_2:3920359-3920378 None:intergenic 45.0%
ATAGCTGACATGGTTCCTTG+TGG + chr5_2:3920500-3920519 None:intergenic 45.0%
ACAAGGAACCATGTCAGCTA+TGG - chr5_2:3920499-3920518 Msa0750490:three_prime_UTR 45.0%
GTTACTCCTTGTGGTGAAAG+TGG + chr5_2:3920543-3920562 None:intergenic 45.0%
AACAGTACCTGTACCTGACA+TGG + chr5_2:3920614-3920633 None:intergenic 45.0%
CTCACCTTAGGCCAAAAGAA+TGG - chr5_2:3921011-3921030 Msa0750490:intron 45.0%
ACCTTAGGCCAAAAGAATGG+TGG - chr5_2:3921014-3921033 Msa0750490:intron 45.0%
TTAGGCCAAAAGAATGGTGG+CGG - chr5_2:3921017-3921036 Msa0750490:intron 45.0%
!! TGGTGGCGGTGTTGTTATAA+CGG - chr5_2:3921031-3921050 Msa0750490:intron 45.0%
!! CAGCACCGACATTTCATTTC+AGG - chr5_2:3921110-3921129 Msa0750490:intron 45.0%
TGACACGACACTGACACATA+TGG - chr5_2:3921153-3921172 Msa0750490:CDS 45.0%
GTTGTGTCCTATGTCTGTGT+CGG - chr5_2:3921225-3921244 Msa0750490:intron 45.0%
!! GTCGGTGCTTTCTGGTTTAA+AGG - chr5_2:3921243-3921262 Msa0750490:intron 45.0%
CTTCTTTAGGCTGTTGAAGG+TGG - chr5_2:3921302-3921321 Msa0750490:intron 45.0%
TTTAGGCTGTTGAAGGTGGA+GGG - chr5_2:3921306-3921325 Msa0750490:intron 45.0%
CAAGAGCAGGGTTAAAGTCA+GGG - chr5_2:3921336-3921355 Msa0750490:CDS 45.0%
AAGAGCAGGGTTAAAGTCAG+GGG - chr5_2:3921337-3921356 Msa0750490:CDS 45.0%
! CTGTCTACTTTGTTGTCAGC+AGG - chr5_2:3921456-3921475 Msa0750490:intron 45.0%
ATCCCTTCTGTTGCTGACAT+AGG - chr5_2:3921527-3921546 Msa0750490:intron 45.0%
GCACTTGAGTGACGTAGAAT+TGG - chr5_2:3921919-3921938 Msa0750490:intron 45.0%
AAGGCAAATGTGAGTAGCTC+TGG + chr5_2:3922422-3922441 None:intergenic 45.0%
ACTCACATTTGCCTTGACTG+TGG - chr5_2:3922427-3922446 Msa0750490:intron 45.0%
! CACCTGATTGAAAGCATGTC+TGG - chr5_2:3922561-3922580 Msa0750490:CDS 45.0%
CACCAGACATGCTTTCAATC+AGG + chr5_2:3922566-3922585 None:intergenic 45.0%
TGGGGACAACTATATGTGTC+CGG + chr5_2:3922829-3922848 None:intergenic 45.0%
AACACAGGAAGAGCTATTGG+TGG - chr5_2:3922889-3922908 Msa0750490:intron 45.0%
!! ATTGGACTTGTGGCTGGTTT+AGG - chr5_2:3922940-3922959 Msa0750490:intron 45.0%
!! TTGGACTTGTGGCTGGTTTA+GGG - chr5_2:3922941-3922960 Msa0750490:intron 45.0%
ACTCCAAAGTTGTCCAACCT+TGG - chr5_2:3923037-3923056 Msa0750490:CDS 45.0%
TGGGACTCACCACTTTATGT+GGG + chr5_2:3923265-3923284 None:intergenic 45.0%
ATAAAGTGGTGAGTCCCACA+TGG - chr5_2:3923267-3923286 Msa0750490:five_prime_UTR 45.0%
CACCAAAGAACCTCACCATC+TGG + chr5_2:3920260-3920279 None:intergenic 50.0%
ACCATGTCAGCTATGGTTGC+AGG - chr5_2:3920506-3920525 Msa0750490:three_prime_UTR 50.0%
ACCTGCAACCATAGCTGACA+TGG + chr5_2:3920510-3920529 None:intergenic 50.0%
GATGGAGTGGTTACTCCTTG+TGG + chr5_2:3920552-3920571 None:intergenic 50.0%
ACATGGAGGAGTGAGTGTCT+TGG + chr5_2:3920597-3920616 None:intergenic 50.0%
AGTACCTGTACCTGACATGG+AGG + chr5_2:3920611-3920630 None:intergenic 50.0%
!! GAAGCCAAAAGGGGTGTTTC+AGG - chr5_2:3920867-3920886 Msa0750490:intron 50.0%
! GGATCCTGAAACACCCCTTT+TGG + chr5_2:3920874-3920893 None:intergenic 50.0%
GGTGTTTCAGGATCCTTCCT+AGG - chr5_2:3920879-3920898 Msa0750490:intron 50.0%
GAGATCACTGCAAGAACTGC+TGG - chr5_2:3920945-3920964 Msa0750490:intron 50.0%
AAGCCACTTGGTCTCACCTT+AGG - chr5_2:3920999-3921018 Msa0750490:intron 50.0%
! GCCACCATTCTTTTGGCCTA+AGG + chr5_2:3921018-3921037 None:intergenic 50.0%
! CAACACCGCCACCATTCTTT+TGG + chr5_2:3921025-3921044 None:intergenic 50.0%
!! GAAAGCACCGACACAGACAT+AGG + chr5_2:3921235-3921254 None:intergenic 50.0%
! ATGTCTGTGTCGGTGCTTTC+TGG - chr5_2:3921235-3921254 Msa0750490:intron 50.0%
CTTTAGGCTGTTGAAGGTGG+AGG - chr5_2:3921305-3921324 Msa0750490:intron 50.0%
GCAAGAGCAGGGTTAAAGTC+AGG - chr5_2:3921335-3921354 Msa0750490:CDS 50.0%
! AATTTTCTCCCGAAGCGAGG+AGG + chr5_2:3922235-3922254 None:intergenic 50.0%
! GTCAATTTTCTCCCGAAGCG+AGG + chr5_2:3922238-3922257 None:intergenic 50.0%
! GCATGGTGGTAGTGTACACT+TGG + chr5_2:3922396-3922415 None:intergenic 50.0%
AGTGTACACTACCACCATGC+AGG - chr5_2:3922396-3922415 Msa0750490:intron 50.0%
! TGTCGTACCTGGTTTGTGTG+TGG - chr5_2:3922703-3922722 Msa0750490:CDS 50.0%
ACAGGAAGAGCTATTGGTGG+TGG - chr5_2:3922892-3922911 Msa0750490:intron 50.0%
!! GAAGAGCTATTGGTGGTGGA+GGG - chr5_2:3922896-3922915 Msa0750490:intron 50.0%
!! TGGACTTGTGGCTGGTTTAG+GGG - chr5_2:3922942-3922961 Msa0750490:intron 50.0%
GTGGGACTCACCACTTTATG+TGG + chr5_2:3923266-3923285 None:intergenic 50.0%
GGCCAGATGGTGAGGTTCTT+TGG - chr5_2:3920255-3920274 Msa0750490:three_prime_UTR 55.0%
TGTGGTGAAAGTGGCAGAGG+AGG + chr5_2:3920534-3920553 None:intergenic 55.0%
CCTTGTGGTGAAAGTGGCAG+AGG + chr5_2:3920537-3920556 None:intergenic 55.0%
!! CCTCTGCCACTTTCACCACA+AGG - chr5_2:3920534-3920553 Msa0750490:three_prime_UTR 55.0%
GGAGGAGTGAGTGTCTTGGA+AGG + chr5_2:3920593-3920612 None:intergenic 55.0%
GACACTCACTCCTCCATGTC+AGG - chr5_2:3920598-3920617 Msa0750490:exon 55.0%
CACTCCTCCATGTCAGGTAC+AGG - chr5_2:3920604-3920623 Msa0750490:CDS 55.0%
GCTGAGGTTGACAAGCCACT+TGG - chr5_2:3920987-3921006 Msa0750490:intron 55.0%
TGGCCTAAGGTGAGACCAAG+TGG + chr5_2:3921005-3921024 None:intergenic 55.0%
GAGGGAATGCAGCAAGAGCA+GGG - chr5_2:3921324-3921343 Msa0750490:CDS 55.0%
! CGTACCTGGTTTGTGTGTGG+CGG - chr5_2:3922706-3922725 Msa0750490:CDS 55.0%
!! GGAAGAGCTATTGGTGGTGG+AGG - chr5_2:3922895-3922914 Msa0750490:intron 55.0%
GGAGGGAATGCAGCAAGAGC+AGG - chr5_2:3921323-3921342 Msa0750490:CDS 60.0%
! CGAGGAGGAGCAGGACGTTT+TGG + chr5_2:3922220-3922239 None:intergenic 60.0%
!! AGTAGCTCTGGCCTGCATGG+TGG + chr5_2:3922410-3922429 None:intergenic 60.0%
!! GTGAGTAGCTCTGGCCTGCA+TGG + chr5_2:3922413-3922432 None:intergenic 60.0%
AGCACCGCCACACACAAACC+AGG + chr5_2:3922713-3922732 None:intergenic 60.0%
GGTGGAGGGTTGCCTCCAAT+TGG - chr5_2:3922910-3922929 Msa0750490:intron 60.0%
!! GTGGCTGGTTTAGGGGCTGT+TGG - chr5_2:3922949-3922968 Msa0750490:intron 60.0%
CGGCTTGAGGCCAGATGGTG+AGG - chr5_2:3920247-3920266 Msa0750490:three_prime_UTR 65.0%
CGTCCTGCTCCTCCTCGCTT+CGG - chr5_2:3922223-3922242 Msa0750490:CDS 65.0%
GTCCTGCTCCTCCTCGCTTC+GGG - chr5_2:3922224-3922243 Msa0750490:CDS 65.0%
CTCCCGAAGCGAGGAGGAGC+AGG + chr5_2:3922229-3922248 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 3920245 3923357 3920245 ID=Msa0750490;Name=Msa0750490
chr5_2 mRNA 3920245 3923357 3920245 ID=Msa0750490-mRNA-1;Parent=Msa0750490;Name=Msa0750490-mRNA-1;_AED=0.05;_eAED=0.06;_QI=264|0.8|0.83|1|1|1|6|358|283
chr5_2 exon 3920245 3920776 3920245 ID=Msa0750490-mRNA-1:exon:1490;Parent=Msa0750490-mRNA-1
chr5_2 exon 3921116 3921184 3921116 ID=Msa0750490-mRNA-1:exon:1489;Parent=Msa0750490-mRNA-1
chr5_2 exon 3921308 3921416 3921308 ID=Msa0750490-mRNA-1:exon:1488;Parent=Msa0750490-mRNA-1
chr5_2 exon 3922125 3922291 3922125 ID=Msa0750490-mRNA-1:exon:1487;Parent=Msa0750490-mRNA-1
chr5_2 exon 3922550 3922765 3922550 ID=Msa0750490-mRNA-1:exon:1486;Parent=Msa0750490-mRNA-1
chr5_2 exon 3922977 3923357 3922977 ID=Msa0750490-mRNA-1:exon:1485;Parent=Msa0750490-mRNA-1
chr5_2 five_prime_UTR 3923094 3923357 3923094 ID=Msa0750490-mRNA-1:five_prime_utr;Parent=Msa0750490-mRNA-1
chr5_2 CDS 3922977 3923093 3922977 ID=Msa0750490-mRNA-1:cds;Parent=Msa0750490-mRNA-1
chr5_2 CDS 3922550 3922765 3922550 ID=Msa0750490-mRNA-1:cds;Parent=Msa0750490-mRNA-1
chr5_2 CDS 3922125 3922291 3922125 ID=Msa0750490-mRNA-1:cds;Parent=Msa0750490-mRNA-1
chr5_2 CDS 3921308 3921416 3921308 ID=Msa0750490-mRNA-1:cds;Parent=Msa0750490-mRNA-1
chr5_2 CDS 3921116 3921184 3921116 ID=Msa0750490-mRNA-1:cds;Parent=Msa0750490-mRNA-1
chr5_2 CDS 3920603 3920776 3920603 ID=Msa0750490-mRNA-1:cds;Parent=Msa0750490-mRNA-1
chr5_2 three_prime_UTR 3920245 3920602 3920245 ID=Msa0750490-mRNA-1:three_prime_utr;Parent=Msa0750490-mRNA-1
Gene Sequence

>Msa0750490

ATGTCAGCTATGGTTGCAGGTACCTCCTCTGCCACTTTCACCACAAGGAGTAACCACTCCATCAAAAACACTCACATCGGACCTTCCAAGACACTCACTCCTCCATGTCAGGTACAGAAAACATCTTTGCTAGGCCTCTCACTTCATGAAGCCAAAAGGGGTGTTTCAGGATCCTTCCTAGGTGACAACAAAAGTGGTTCTTCCTCTATTGCTAGAAAGAGACTTGAGATCACTGCAAGAACTGCTGGAGCTTCAAAGACAATTGAAGCTGAGGTTGACAAGCCACTTGGTCTCACCTTAGGCCAAAAGAATGGTGGCGGTGTTGTTATAACGGCTGTTGAAGGTGGAGGGAATGCAGCAAGAGCAGGGTTAAAGTCAGGGGACCAAGTTCTATATACTAGCAGTTTCTTTGGAGATGAATTATGGCCAGCAGATAAACTTGGATTCACGAAAACAGCAATCAACGCTAAGCCTGACTCTGTCTACTTTGTTGTCAGCAGAGGTGGTGCTGATGTAGATGTTAAAAGGCTTCCAAAACGTCCTGCTCCTCCTCGCTTCGGGAGAAAATTGACTGAGACTCAAAAGGCAAGAATCATTATTCATTTTGGAGCCAGAGCTACTCACATTTGCCTTGACTGTGGATACATATACTTCTTACCAAAATCTTTTGATGACCAGCCGGACACATATAGTTGTCCCCAATGTCAAGCACCAAAGAAGAGGTTTGCTGAGTATGATGTTAACACAGGAAGAGCTATTGGTGGTGGAGGGTTGCCTCCAATTGGAGTTATTATTGGACTTGTGGCTGGTTTAGGGGCTGTTGGAGCTTTGCTTGTTTTTGGTCTTCAGTGA

Protein sequence

>Msa0750490

MSAMVAGTSSATFTTRSNHSIKNTHIGPSKTLTPPCQVQKTSLLGLSLHEAKRGVSGSFLGDNKSGSSSIARKRLEITARTAGASKTIEAEVDKPLGLTLGQKNGGGVVITAVEGGGNAARAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAINAKPDSVYFVVSRGGADVDVKRLPKRPAPPRFGRKLTETQKARIIIHFGARATHICLDCGYIYFLPKSFDDQPDTYSCPQCQAPKKRFAEYDVNTGRAIGGGGLPPIGVIIGLVAGLGAVGALLVFGLQ*