AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1371540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1371540 MtrunA17_Chr1g0157481 96.418 335 10 1 1 335 1 333 0.0 615
Msa1371540 MtrunA17_Chr5g0447531 46.215 251 117 7 78 324 17 253 1.02e-63 202
Msa1371540 MtrunA17_Chr6g0453151 40.752 319 171 10 7 324 19 320 8.57e-63 202
Msa1371540 MtrunA17_Chr6g0453141 48.133 241 113 7 85 324 24 253 1.60e-62 199
Msa1371540 MtrunA17_Chr4g0051941 47.934 242 113 7 85 324 24 254 3.91e-62 199
Msa1371540 MtrunA17_Chr6g0453181 50.901 222 98 6 103 324 43 253 5.96e-62 198
Msa1371540 MtrunA17_Chr6g0453161 51.389 216 94 6 109 324 316 520 8.24e-59 197
Msa1371540 MtrunA17_Chr6g0453161 50.926 216 95 6 109 324 51 255 1.70e-58 197
Msa1371540 MtrunA17_Chr2g0318521 46.575 219 108 3 106 324 43 252 1.89e-58 189
Msa1371540 MtrunA17_Chr6g0476641 44.444 234 114 4 95 326 57 276 9.01e-50 167
Msa1371540 MtrunA17_Chr6g0464511 43.860 228 83 8 97 324 18 200 1.01e-43 149
Msa1371540 MtrunA17_Chr3g0133901 39.669 242 105 7 105 331 49 264 9.52e-41 143
Msa1371540 MtrunA17_Chr8g0345631 31.868 273 142 7 72 330 24 266 7.51e-36 130
Msa1371540 MtrunA17_Chr6g0462031 39.500 200 99 7 127 325 56 234 2.14e-35 129
Msa1371540 MtrunA17_Chr3g0092091 38.208 212 99 8 127 330 63 250 3.40e-34 125
Msa1371540 MtrunA17_Chr2g0301081 36.916 214 107 5 127 331 72 266 3.09e-33 124
Msa1371540 MtrunA17_Chr5g0448421 36.245 229 106 8 128 335 68 277 7.26e-33 123
Msa1371540 MtrunA17_Chr5g0448411 36.245 229 106 8 128 335 66 275 8.37e-33 122
Msa1371540 MtrunA17_Chr4g0006181 34.848 264 97 11 114 331 112 346 1.69e-28 113
Msa1371540 MtrunA17_Chr6g0453171 61.039 77 27 2 248 324 13 86 4.16e-24 94.7
Msa1371540 MtrunA17_Chr3g0113311 30.131 229 90 6 127 310 67 270 6.40e-18 82.4
Msa1371540 MtrunA17_Chr2g0279001 32.287 223 102 8 114 310 57 256 7.21e-17 79.3
Msa1371540 MtrunA17_Chr2g0296081 49.333 75 33 2 255 329 32 101 1.09e-16 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1371540 AT1G76570.1 76.744 301 63 2 37 331 28 327 2.24e-174 487
Msa1371540 AT3G27690.2 50.655 229 96 6 99 324 72 286 9.57e-67 212
Msa1371540 AT3G27690.1 50.655 229 96 6 99 324 40 254 9.93e-67 211
Msa1371540 AT2G05100.1 45.489 266 125 8 65 324 2 253 4.18e-65 207
Msa1371540 AT2G05070.1 49.782 229 98 6 99 324 39 253 6.30e-65 206
Msa1371540 AT1G29930.1 49.776 223 102 6 102 324 43 255 6.33e-62 199
Msa1371540 AT1G29920.1 49.776 223 102 6 102 324 43 255 7.44e-62 198
Msa1371540 AT1G29910.1 49.776 223 102 6 102 324 43 255 7.44e-62 198
Msa1371540 AT2G34430.1 49.123 228 106 6 97 324 37 254 2.93e-61 197
Msa1371540 AT2G34420.1 49.776 223 102 6 102 324 41 253 4.93e-61 196
Msa1371540 AT5G54270.1 46.119 219 109 3 106 324 44 253 1.15e-58 190
Msa1371540 AT2G05100.2 44.400 250 119 8 65 308 2 237 1.49e-53 179
Msa1371540 AT4G10340.1 47.297 222 97 5 109 326 62 267 4.54e-48 163
Msa1371540 AT1G45474.2 38.117 223 91 5 127 329 56 251 3.32e-39 139
Msa1371540 AT1G45474.1 38.117 223 91 5 127 329 56 251 3.32e-39 139
Msa1371540 AT3G54890.1 42.500 200 93 7 127 325 55 233 1.56e-37 134
Msa1371540 AT3G47470.1 34.979 243 123 9 96 330 36 251 4.87e-35 128
Msa1371540 AT1G19150.1 36.279 215 107 5 127 331 75 269 3.84e-34 126
Msa1371540 AT1G61520.3 35.926 270 124 11 89 335 30 273 1.10e-33 125
Msa1371540 AT1G61520.1 35.926 270 124 11 89 335 30 273 1.10e-33 125
Msa1371540 AT3G61470.1 34.234 222 116 5 120 330 53 255 3.51e-33 124
Msa1371540 AT1G61520.2 35.874 223 103 8 134 335 15 218 9.47e-30 113
Msa1371540 AT5G01530.1 34.221 263 100 10 114 331 55 289 1.52e-28 112
Msa1371540 AT3G08940.2 33.218 289 117 12 92 331 25 286 3.96e-28 111
Msa1371540 AT3G54890.2 33.333 228 85 7 99 325 38 199 1.51e-24 99.4
Msa1371540 AT3G54890.4 41.212 165 72 6 127 289 55 196 2.23e-23 96.7
Msa1371540 AT2G40100.1 32.407 216 102 9 110 310 82 268 1.17e-16 79.3
Msa1371540 AT5G28450.1 47.368 76 39 1 256 330 96 171 1.00e-15 74.3
Msa1371540 AT3G54890.3 43.529 85 41 2 127 211 55 132 1.33e-12 65.5

Find 118 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGATCTTTGGACAGATTTA+AGG 0.152281 tig0019233:+109724 None:intergenic
AGATGTTGTGTTCTGGGTTT+TGG 0.172127 tig0019233:+112969 None:intergenic
TTCAAAAGCTTCAGGATCTT+TGG 0.220610 tig0019233:+109712 None:intergenic
GGGGAACTGCCTGGGGATTA+TGG 0.220707 tig0019233:-112588 Msa1371540:CDS
TCCTGAGTTATTAGACCTAT+TGG 0.230242 tig0019233:-112348 Msa1371540:CDS
CATGGCTGTTGTGCAGGTTT+TGG 0.262087 tig0019233:-109421 Msa1371540:three_prime_UTR
GGGTAGCCATCATACGAAAT+AGG 0.272531 tig0019233:+112624 None:intergenic
GCAGATGAGATGTTGTGTTC+TGG 0.276090 tig0019233:+112962 None:intergenic
TTCAGCTCTTCAAAAGCTTC+AGG 0.290764 tig0019233:+109704 None:intergenic
CCACAATATCTGGCGTATTC+TGG 0.301086 tig0019233:+109821 None:intergenic
TGCTTCAATCCCACAATATC+TGG 0.308295 tig0019233:+109811 None:intergenic
TCTTCATCTTGTTTCGTTAG+TGG 0.309561 tig0019233:-113032 Msa1371540:CDS
AATCACACATTTCTTAAAAC+TGG 0.315099 tig0019233:+109335 None:intergenic
GCTATAGCTAACAGTCCATT+AGG 0.317955 tig0019233:-112873 Msa1371540:CDS
GATTATGGCTTTGACATTGC+TGG 0.328181 tig0019233:-112573 Msa1371540:CDS
CTTTGAAGTGACTCCCCTAA+TGG 0.329323 tig0019233:+112858 None:intergenic
ATCTCATCTGCAATGCTTCA+TGG 0.333732 tig0019233:-112950 Msa1371540:CDS
TATTTGCCAAGTACTCCTTA+TGG 0.335720 tig0019233:-110250 Msa1371540:intron
CCTGAGTTATTAGACCTATT+GGG 0.347914 tig0019233:-112347 Msa1371540:CDS
CTTATTACAGCTATTACTTC+AGG 0.349625 tig0019233:+109378 None:intergenic
CAGATGAGATGTTGTGTTCT+GGG 0.350739 tig0019233:+112963 None:intergenic
GAAGGCCTGTTGTTAATTAG+AGG 0.355824 tig0019233:+109229 None:intergenic
AAGTAACTTAATTGTTTGTT+TGG 0.359607 tig0019233:+109207 None:intergenic
TTCACTTTGTTGAACCTGTT+TGG 0.368694 tig0019233:-112319 Msa1371540:CDS
CTGCAGTTCCACTGGATCCT+TGG 0.370306 tig0019233:+112545 None:intergenic
TTGAGATATTGCATGCTCGC+TGG 0.371386 tig0019233:-112400 Msa1371540:CDS
CCTTTCCACAACAACTTGCT+TGG 0.375325 tig0019233:-109566 Msa1371540:CDS
CTTTCCACAACAACTTGCTT+GGG 0.383331 tig0019233:-109565 Msa1371540:CDS
GGATCTTTGGACAGATTTAA+GGG 0.386269 tig0019233:+109725 None:intergenic
GCTTCATGGCAAGAGCTTGC+TGG 0.387520 tig0019233:-112936 Msa1371540:CDS
CTATAGCTAACAGTCCATTA+GGG 0.394585 tig0019233:-112872 Msa1371540:CDS
CAAGGTCGGCCTCGTTGGCT+TGG 0.394675 tig0019233:-112648 Msa1371540:CDS
CTTGGCCCTATTTCGTATGA+TGG 0.395875 tig0019233:-112630 Msa1371540:CDS
GCTACCCATCATATCTCATT+GGG 0.406465 tig0019233:-112608 Msa1371540:CDS
ATCTCATTGGGGAACTGCCT+GGG 0.413530 tig0019233:-112596 Msa1371540:CDS
AGGAGTCCTTCATTTGTTGA+AGG 0.416604 tig0019233:-109286 Msa1371540:three_prime_UTR
TATCTCATTGGGGAACTGCC+TGG 0.425964 tig0019233:-112597 Msa1371540:CDS
ACAAAACTCCTCTAAATTCA+AGG 0.426529 tig0019233:-112805 Msa1371540:CDS
CCTTCACTTAGCTGGAAGCC+AGG 0.428233 tig0019233:-110289 Msa1371540:CDS
TCATTCCTCTAATTAACAAC+AGG 0.428524 tig0019233:-109234 Msa1371540:three_prime_UTR
TTGGCAATGATGGCTTGGTT+AGG 0.434393 tig0019233:-109656 Msa1371540:CDS
AAATGGACGCTTGGCAATGA+TGG 0.434782 tig0019233:-109666 Msa1371540:CDS
AAATATTTCTGCAGTTCCAC+TGG 0.436745 tig0019233:+112537 None:intergenic
AACTTAATTGTTTGTTTGGA+AGG 0.437121 tig0019233:+109211 None:intergenic
AGCCTGAGCCTTGAATTTAG+AGG 0.441217 tig0019233:+112797 None:intergenic
GGCTACCCATCATATCTCAT+TGG 0.443187 tig0019233:-112609 Msa1371540:CDS
GGTAGCCATCATACGAAATA+GGG 0.443439 tig0019233:+112625 None:intergenic
TAACCAACGCGCCACCAAAC+AGG 0.453677 tig0019233:+112305 None:intergenic
CTTCCAGCTAAGTGAAGGCC+TGG 0.460265 tig0019233:+110294 None:intergenic
GGATCAAACAATGCTCCTCC+AGG 0.460577 tig0019233:+109746 None:intergenic
GCGTGGCATGGCTGTTGTGC+AGG 0.464275 tig0019233:-109427 Msa1371540:three_prime_UTR
TGAGATATTGCATGCTCGCT+GGG 0.466215 tig0019233:-112399 Msa1371540:CDS
CCAGAATACGCCAGATATTG+TGG 0.467314 tig0019233:-109821 Msa1371540:CDS
CTAGATTACCTTGGCATCCC+AGG 0.469883 tig0019233:-110312 Msa1371540:CDS
CGTTGGTTATTCCAAGCTCC+AGG 0.475483 tig0019233:-112291 Msa1371540:intron
CTCCTCTAAATTCAAGGCTC+AGG 0.476322 tig0019233:-112799 Msa1371540:CDS
ATGGACAAGGTCGGCCTCGT+TGG 0.481460 tig0019233:-112653 Msa1371540:CDS
AGTTCCCCAATGAGATATGA+TGG 0.482903 tig0019233:+112603 None:intergenic
TGGGCTATGCTTGCATCTGT+TGG 0.483351 tig0019233:-112380 Msa1371540:CDS
TGACATTGCTGGCCTTGCCA+AGG 0.493730 tig0019233:-112562 Msa1371540:CDS
ATCCCAGGCCTTCACTTAGC+TGG 0.493884 tig0019233:-110297 Msa1371540:CDS
ATATTGTGGGATTGAAGCAC+TGG 0.493998 tig0019233:-109807 Msa1371540:CDS
GCATTACCATAAGGAGTACT+TGG 0.495126 tig0019233:+110244 None:intergenic
TTCACACAAGCGGCACTGAC+GGG 0.495505 tig0019233:-109629 Msa1371540:CDS
CTTCACACAAGCGGCACTGA+CGG 0.499189 tig0019233:-109630 Msa1371540:CDS
GAAGTAATAGCTGTAATAAG+TGG 0.502568 tig0019233:-109375 Msa1371540:three_prime_UTR
CAAAGTGAAAGACTCCCAAT+AGG 0.506429 tig0019233:+112333 None:intergenic
AACAGACCTTCAACAAATGA+AGG 0.508939 tig0019233:+109280 None:intergenic
GAACATGCTAACCTGGAGCT+TGG 0.511852 tig0019233:+112280 None:intergenic
GGCTTGTCTCAAACTAAGAA+AGG 0.513058 tig0019233:-113101 None:intergenic
CCAGGGTAGTTTATATCACC+AGG 0.514510 tig0019233:+109764 None:intergenic
TGTTAATTAGAGGAATGATA+AGG 0.514974 tig0019233:+109239 None:intergenic
CAAGCGGCACTGACGGGTAA+AGG 0.516467 tig0019233:-109623 Msa1371540:CDS
GACGCTTGGCAATGATGGCT+TGG 0.532277 tig0019233:-109661 Msa1371540:CDS
TCAAACTAAGAAAGGAGCTA+TGG 0.534985 tig0019233:-113093 Msa1371540:exon
AACGAAACAAGATGAAGAAG+AGG 0.542469 tig0019233:+113037 None:intergenic
ATTCAAGGCTCAGGCTGCCA+AGG 0.545741 tig0019233:-112790 Msa1371540:CDS
CTTAGCTGGAAGCCAGGGAG+TGG 0.549922 tig0019233:-110283 Msa1371540:CDS
CCCAATAGGTCTAATAACTC+AGG 0.553945 tig0019233:+112347 None:intergenic
TTCCAGCTAAGTGAAGGCCT+GGG 0.557148 tig0019233:+110295 None:intergenic
CAATTCAATGAAATTACACT+AGG 0.563647 tig0019233:-109537 Msa1371540:exon
TAGCAATCACAACCACTCCC+TGG 0.564935 tig0019233:+110271 None:intergenic
AAAGCAGTTTACAGAGGAGA+GGG 0.566780 tig0019233:+112995 None:intergenic
GTGACCCAAGCAAGTTGTTG+TGG 0.567405 tig0019233:+109561 None:intergenic
GAACCTGTTTGGTGGCGCGT+TGG 0.568409 tig0019233:-112308 Msa1371540:CDS
CCAAGCAAGTTGTTGTGGAA+AGG 0.568516 tig0019233:+109566 None:intergenic
CCTCTAGGAATATATCTGCC+TGG 0.569936 tig0019233:-109782 Msa1371540:CDS
ATTGAAGCACTGGAGCCTCT+AGG 0.571898 tig0019233:-109797 Msa1371540:CDS
CAGAATACGCCAGATATTGT+GGG 0.576638 tig0019233:-109820 Msa1371540:CDS
ACTTTGTTGAACCTGTTTGG+TGG 0.577642 tig0019233:-112316 Msa1371540:CDS
AGTGAAGGCCTGGGATGCCA+AGG 0.580571 tig0019233:+110304 None:intergenic
CAAAGCAGTTTACAGAGGAG+AGG 0.584363 tig0019233:+112994 None:intergenic
CAAGTTGTTGTGGAAAGGAT+CGG 0.585579 tig0019233:+109571 None:intergenic
CTTCACTTAGCTGGAAGCCA+GGG 0.598176 tig0019233:-110288 Msa1371540:CDS
TCTCATTGGGGAACTGCCTG+GGG 0.598517 tig0019233:-112595 Msa1371540:CDS
ATGTCAAAGCCATAATCCCC+AGG 0.603179 tig0019233:+112579 None:intergenic
CTAAATATAAGAGACAATGT+AGG 0.609097 tig0019233:-109489 Msa1371540:three_prime_UTR
ATAGCTTTGACAGCAGTGAA+AGG 0.610261 tig0019233:+112891 None:intergenic
GTTAGGTTTCTTCACACAAG+CGG 0.612558 tig0019233:-109639 Msa1371540:CDS
AAACAAGATGAAGAAGAGGA+AGG 0.620196 tig0019233:+113041 None:intergenic
GGGGATACTCTAGATTACCT+TGG 0.624443 tig0019233:-110321 Msa1371540:CDS
CCTGGCTTCCAGCTAAGTGA+AGG 0.626238 tig0019233:+110289 None:intergenic
GTTCCACTGGATCCTTGGCA+AGG 0.626418 tig0019233:+112550 None:intergenic
AGGTCCTGTACAAAACATTG+TGG 0.632483 tig0019233:-109603 Msa1371540:CDS
GTTCCCCAATGAGATATGAT+GGG 0.633105 tig0019233:+112604 None:intergenic
GCATTGATGCATTAGAGGCG+TGG 0.633762 tig0019233:-109444 Msa1371540:three_prime_UTR
CCTGGTGATATAAACTACCC+TGG 0.634831 tig0019233:-109764 Msa1371540:CDS
GATCAAACAATGCTCCTCCA+GGG 0.637834 tig0019233:+109747 None:intergenic
CTAAGAAAGGAGCTATGGTG+TGG 0.655345 tig0019233:-113088 Msa1371540:exon
TATAGCTAACAGTCCATTAG+GGG 0.659518 tig0019233:-112871 Msa1371540:CDS
TGGGGCAAAGCAGTTTACAG+AGG 0.661215 tig0019233:+112989 None:intergenic
GATGCATTAGAGGCGTGGCA+TGG 0.664896 tig0019233:-109439 Msa1371540:three_prime_UTR
CCAGGCAGATATATTCCTAG+AGG 0.666249 tig0019233:+109782 None:intergenic
TGGCCTTGCCAAGGATCCAG+TGG 0.670833 tig0019233:-112553 Msa1371540:CDS
CTGCCAAGGCCAGAAAACAG+AGG 0.673764 tig0019233:-112776 Msa1371540:intron
CTACCCATCATATCTCATTG+GGG 0.701642 tig0019233:-112607 Msa1371540:CDS
GAAATAGGGCCAAGCCAACG+AGG 0.723058 tig0019233:+112639 None:intergenic
GGTGATATAAACTACCCTGG+AGG 0.752250 tig0019233:-109761 Msa1371540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAATAAAAATAATTGAAAT+CGG + tig0019233:109520-109539 None:intergenic 10.0%
!! TTAATGGTAAATTAAATGAA+AGG + tig0019233:109841-109860 None:intergenic 15.0%
!!! AGGAATTTTTTTAATGATTA+TGG - tig0019233:110333-110352 Msa1371540:intron 15.0%
!!! GGAATTTTTTTAATGATTAT+GGG - tig0019233:110334-110353 Msa1371540:intron 15.0%
!!! ATTTTCTTAATTTCTTCAAA+TGG + tig0019233:110959-110978 None:intergenic 15.0%
!!! TTATTAGATTTTTAACTTAG+TGG - tig0019233:112166-112185 Msa1371540:intron 15.0%
!! AAAGTGAAAGAAATAAAAAA+TGG - tig0019233:112581-112600 Msa1371540:CDS 15.0%
!! ATAACATAACATAACCATAA+TGG + tig0019233:109768-109787 None:intergenic 20.0%
!! AGTTTATAAAGAGAATTGAT+AGG - tig0019233:110511-110530 Msa1371540:intron 20.0%
!! AGTTTATAAAGAGAATTGAT+AGG - tig0019233:110511-110530 Msa1371540:intron 20.0%
!!! TCCCTTTTTTTAATGATTAT+GGG - tig0019233:110652-110671 Msa1371540:intron 20.0%
!! TCCCATAATCATTAAAAAAA+GGG + tig0019233:110338-110357 None:intergenic 20.0%
!! AGTTTATAAAGAGAATTGAT+AGG - tig0019233:110511-110530 Msa1371540:intron 20.0%
!!! TTTTTTCCAATATTTGTCAA+CGG - tig0019233:110925-110944 Msa1371540:intron 20.0%
!!! CTTGAATTTAAAGTGTATTT+TGG - tig0019233:111384-111403 Msa1371540:intron 20.0%
!! ACCAAATAATTCTAATATTG+TGG + tig0019233:111549-111568 None:intergenic 20.0%
!! ACTCTTATTGTTAAATGTTA+AGG - tig0019233:111573-111592 Msa1371540:intron 20.0%
!! CTCTTATTGTTAAATGTTAA+GGG - tig0019233:111574-111593 Msa1371540:intron 20.0%
!! TCTTATTGTTAAATGTTAAG+GGG - tig0019233:111575-111594 Msa1371540:intron 20.0%
!! AACCAAGTTATTAGATAAAT+AGG - tig0019233:111630-111649 Msa1371540:intron 20.0%
!! ACCAAGTTATTAGATAAATA+GGG - tig0019233:111631-111650 Msa1371540:intron 20.0%
!! CAATTAATAAAGTGCAATAA+TGG + tig0019233:111780-111799 None:intergenic 20.0%
!! AAATAAAAAGTTTCAGTAGT+TGG - tig0019233:112314-112333 Msa1371540:CDS 20.0%
!!! AACCATAAATTTGTTTCTTT+TGG - tig0019233:112345-112364 Msa1371540:CDS 20.0%
!! AAGTAACTTAATTGTTTGTT+TGG + tig0019233:113060-113079 None:intergenic 20.0%
! GAAAATGTTTAAGGAATGAT+AGG + tig0019233:109581-109600 None:intergenic 25.0%
! AACAAACTTGTGTAAGATAA+AGG + tig0019233:110033-110052 None:intergenic 25.0%
!! CATTTTCCACTAATTAGAAA+GGG - tig0019233:110076-110095 Msa1371540:intron 25.0%
!! AATTTTCCCTTTCTAATTAG+TGG + tig0019233:110085-110104 None:intergenic 25.0%
! CATTCATTGTAAAAGTTTAC+CGG - tig0019233:110302-110321 Msa1371540:CDS 25.0%
! AAAAAATTCCTTATTCATGC+CGG + tig0019233:110324-110343 None:intergenic 25.0%
! CATTCATTGTAAAAGTTTAC+CGG - tig0019233:110302-110321 Msa1371540:CDS 25.0%
!!! CTCCCTTTTTTTAATGATTA+TGG - tig0019233:110651-110670 Msa1371540:intron 25.0%
! CTCCCATAATCATTAAAAAA+AGG + tig0019233:110339-110358 None:intergenic 25.0%
! TGATATGAGTTTATAAAGAG+AGG + tig0019233:110874-110893 None:intergenic 25.0%
!! AAGTTTTCAAACCTGTTATA+TGG - tig0019233:111055-111074 Msa1371540:intron 25.0%
! ACGGTAATATTATTTAAGAG+TGG + tig0019233:111149-111168 None:intergenic 25.0%
! GCCACAATATTAGAATTATT+TGG - tig0019233:111545-111564 Msa1371540:intron 25.0%
! TCCCTATTTATCTAATAACT+TGG + tig0019233:111635-111654 None:intergenic 25.0%
! AATTATTGGTATAGGGATAA+GGG + tig0019233:111740-111759 None:intergenic 25.0%
!! TTTTTACGAAGCAAATAAAC+TGG - tig0019233:111863-111882 Msa1371540:intron 25.0%
!!! GATTTTTAACTTAGTGGTAT+TGG - tig0019233:112172-112191 Msa1371540:intron 25.0%
! CTTTCATAACTCATTTGTTT+GGG - tig0019233:112288-112307 Msa1371540:intron 25.0%
! GTCCAAAAGAAACAAATTTA+TGG + tig0019233:112350-112369 None:intergenic 25.0%
! ATTCTTATCATAAAACAGGT+TGG - tig0019233:112419-112438 Msa1371540:intron 25.0%
! CAATTCAATGAAATTACACT+AGG - tig0019233:112727-112746 Msa1371540:intron 25.0%
! CTAAATATAAGAGACAATGT+AGG - tig0019233:112775-112794 Msa1371540:intron 25.0%
! AATCACACATTTCTTAAAAC+TGG + tig0019233:112932-112951 None:intergenic 25.0%
! TGTTAATTAGAGGAATGATA+AGG + tig0019233:113028-113047 None:intergenic 25.0%
! AACTTAATTGTTTGTTTGGA+AGG + tig0019233:113056-113075 None:intergenic 25.0%
ACAAAACTCCTCTAAATTCA+AGG - tig0019233:109459-109478 Msa1371540:three_prime_UTR 30.0%
CCAAAAGCTGAAAATGTTTA+AGG + tig0019233:109590-109609 None:intergenic 30.0%
! CCTTAAACATTTTCAGCTTT+TGG - tig0019233:109587-109606 Msa1371540:CDS 30.0%
! AACATTTTCAGCTTTTGGTA+TGG - tig0019233:109592-109611 Msa1371540:CDS 30.0%
TAACATAACCATAATGGCTT+GGG + tig0019233:109762-109781 None:intergenic 30.0%
ATAACATAACCATAATGGCT+TGG + tig0019233:109763-109782 None:intergenic 30.0%
TGCAATATCTCAAAGCTTAA+TGG + tig0019233:109857-109876 None:intergenic 30.0%
CCTTTCTAATTAGTGGAAAA+TGG + tig0019233:110078-110097 None:intergenic 30.0%
! CCATTTTCCACTAATTAGAA+AGG - tig0019233:110075-110094 Msa1371540:intron 30.0%
CATCTTGTAATGAGAAAGAA+AGG + tig0019233:110382-110401 None:intergenic 30.0%
ATAGATGCCAAATATCATCA+GGG - tig0019233:110444-110463 Msa1371540:intron 30.0%
CATATTTCCCTGATGATATT+TGG + tig0019233:110454-110473 None:intergenic 30.0%
TGTCAGTTAGTTATAAAGAG+AGG + tig0019233:110555-110574 None:intergenic 30.0%
TGGGAGATACAAATATAACA+TGG - tig0019233:110671-110690 Msa1371540:intron 30.0%
CATCTTGTAATGAGAAAGAA+AGG + tig0019233:110382-110401 None:intergenic 30.0%
ACATAGATGCCAAATATCAT+CGG - tig0019233:110442-110461 Msa1371540:intron 30.0%
! ATCAATTGTGTGCTTTGTTA+TGG - tig0019233:110996-111015 Msa1371540:intron 30.0%
! TCAATTGTGTGCTTTGTTAT+GGG - tig0019233:110997-111016 Msa1371540:intron 30.0%
! TTTTCAAACCTGTTATATGG+TGG - tig0019233:111058-111077 Msa1371540:intron 30.0%
TTTCAAACCTGTTATATGGT+GGG - tig0019233:111059-111078 Msa1371540:intron 30.0%
! AAACATACGAAAGCATATCA+CGG + tig0019233:111168-111187 None:intergenic 30.0%
CTCTTTATAAGACTTAGAGT+GGG + tig0019233:111219-111238 None:intergenic 30.0%
TAGATAAATAGGGATGCTAA+AGG - tig0019233:111641-111660 Msa1371540:intron 30.0%
GAATTATTGGTATAGGGATA+AGG + tig0019233:111741-111760 None:intergenic 30.0%
TCCCTATACCAATAATTCTT+TGG - tig0019233:111743-111762 Msa1371540:intron 30.0%
GCCAAAGAATTATTGGTATA+GGG + tig0019233:111747-111766 None:intergenic 30.0%
TGCCAAAGAATTATTGGTAT+AGG + tig0019233:111748-111767 None:intergenic 30.0%
!! AGAAAGTGCCAAAGAATTAT+TGG + tig0019233:111754-111773 None:intergenic 30.0%
AGCTAAATTTATTCTCATGC+AGG + tig0019233:111824-111843 None:intergenic 30.0%
! CATGAGAATAAATTTAGCTC+AGG - tig0019233:111825-111844 Msa1371540:intron 30.0%
CATCATCACTAACATCATAT+GGG + tig0019233:112129-112148 None:intergenic 30.0%
ACATCATCACTAACATCATA+TGG + tig0019233:112130-112149 None:intergenic 30.0%
! ATATGATGTTAGTGATGATG+TGG - tig0019233:112129-112148 Msa1371540:intron 30.0%
! TTAGTGGTATTGGATGTATT+GGG - tig0019233:112182-112201 Msa1371540:intron 30.0%
TACAAATCGAACATTTCTCA+TGG - tig0019233:112217-112236 Msa1371540:intron 30.0%
GCTTTCATAACTCATTTGTT+TGG - tig0019233:112287-112306 Msa1371540:intron 30.0%
AGCTACTGTTACTACTAATT+TGG - tig0019233:112395-112414 Msa1371540:CDS 30.0%
GCTACTGTTACTACTAATTT+GGG - tig0019233:112396-112415 Msa1371540:CDS 30.0%
TGGGATTCTTATCATAAAAC+AGG - tig0019233:112415-112434 Msa1371540:intron 30.0%
AGAAATAAAAAATGGACGCT+TGG - tig0019233:112589-112608 Msa1371540:CDS 30.0%
!! ATTTTGCATTGATGCATTAG+AGG - tig0019233:112815-112834 Msa1371540:CDS 30.0%
CTTATTACAGCTATTACTTC+AGG + tig0019233:112889-112908 None:intergenic 30.0%
GAAGTAATAGCTGTAATAAG+TGG - tig0019233:112889-112908 Msa1371540:CDS 30.0%
GAATGATAAGGTCACAAAAA+CGG + tig0019233:113016-113035 None:intergenic 30.0%
TCATTCCTCTAATTAACAAC+AGG - tig0019233:113030-113049 Msa1371540:CDS 30.0%
TCAAACTAAGAAAGGAGCTA+TGG - tig0019233:109171-109190 Msa1371540:three_prime_UTR 35.0%
AAACAAGATGAAGAAGAGGA+AGG + tig0019233:109226-109245 None:intergenic 35.0%
AACGAAACAAGATGAAGAAG+AGG + tig0019233:109230-109249 None:intergenic 35.0%
! TCTTCATCTTGTTTCGTTAG+TGG - tig0019233:109232-109251 Msa1371540:three_prime_UTR 35.0%
CTATAGCTAACAGTCCATTA+GGG - tig0019233:109392-109411 Msa1371540:three_prime_UTR 35.0%
TATAGCTAACAGTCCATTAG+GGG - tig0019233:109393-109412 Msa1371540:three_prime_UTR 35.0%
GGAGTCACTTCAAAGAAAAA+TGG - tig0019233:109414-109433 Msa1371540:three_prime_UTR 35.0%
! AAATATTTCTGCAGTTCCAC+TGG + tig0019233:109730-109749 None:intergenic 35.0%
TCCTGAGTTATTAGACCTAT+TGG - tig0019233:109916-109935 Msa1371540:intron 35.0%
CCTGAGTTATTAGACCTATT+GGG - tig0019233:109917-109936 Msa1371540:intron 35.0%
TTCACTTTGTTGAACCTGTT+TGG - tig0019233:109945-109964 Msa1371540:intron 35.0%
TCTCTCATTTCATCGACAAT+AGG - tig0019233:110275-110294 Msa1371540:CDS 35.0%
CTCTCATTTCATCGACAATA+GGG - tig0019233:110276-110295 Msa1371540:CDS 35.0%
AAAGTTTACCGGCATGAATA+AGG - tig0019233:110313-110332 Msa1371540:CDS 35.0%
TGGGAGATGCAAATATAACA+TGG - tig0019233:110353-110372 Msa1371540:intron 35.0%
CATAGATGCCAAATATCATC+AGG - tig0019233:110443-110462 Msa1371540:intron 35.0%
AGAGAATTGATAGGCTCATA+AGG - tig0019233:110520-110539 Msa1371540:intron 35.0%
AGAGAATTGATAGGCTCAAT+AGG - tig0019233:110586-110605 Msa1371540:intron 35.0%
GAGAATTGATAGGCTCAATA+GGG - tig0019233:110587-110606 Msa1371540:intron 35.0%
AAAGTTTACCGGCATGAATT+TGG - tig0019233:110624-110643 Msa1371540:intron 35.0%
CATAGATGCCAAATATCATC+GGG - tig0019233:110443-110462 Msa1371540:intron 35.0%
ATAGATGCCAAATATCATCG+GGG - tig0019233:110763-110782 Msa1371540:intron 35.0%
CATATTTCCCCGATGATATT+TGG + tig0019233:110773-110792 None:intergenic 35.0%
CTTATCAGTTAGTTATGCAG+TGG + tig0019233:110810-110829 None:intergenic 35.0%
AGAGAATTGATAGGCTCATA+AGG - tig0019233:110520-110539 Msa1371540:intron 35.0%
AGAGTCCTATATTTCCAATG+TGG - tig0019233:110894-110913 Msa1371540:intron 35.0%
GAGTCCTATATTTCCAATGT+GGG - tig0019233:110895-110914 Msa1371540:intron 35.0%
AAGTCCCACATTGGAAATAT+AGG + tig0019233:110902-110921 None:intergenic 35.0%
TATATTTCCAATGTGGGACT+TGG - tig0019233:110901-110920 Msa1371540:intron 35.0%
ATATTTCCAATGTGGGACTT+GGG - tig0019233:110902-110921 Msa1371540:intron 35.0%
GTAGTACCGTTGACAAATAT+TGG + tig0019233:110934-110953 None:intergenic 35.0%
TTCAAACCTGTTATATGGTG+GGG - tig0019233:111060-111079 Msa1371540:intron 35.0%
! TGTTATATGGTGGGGAAAAA+GGG - tig0019233:111068-111087 Msa1371540:intron 35.0%
TCGACAACACTACATAGAAT+TGG - tig0019233:111123-111142 Msa1371540:intron 35.0%
CCTCTTTATAAGACTTAGAG+TGG + tig0019233:111220-111239 None:intergenic 35.0%
! CCACTCTAAGTCTTATAAAG+AGG - tig0019233:111217-111236 Msa1371540:intron 35.0%
TTTCGACAGGATAACAGTAT+TGG + tig0019233:111276-111295 None:intergenic 35.0%
AAGTTAGTGACAATTTCGAC+AGG + tig0019233:111289-111308 None:intergenic 35.0%
!!! TATTTTGGTATTCACCCTTG+TGG - tig0019233:111399-111418 Msa1371540:intron 35.0%
TGTATCAAGCTTAAGCTACA+AGG - tig0019233:111517-111536 Msa1371540:intron 35.0%
GTATCAAGCTTAAGCTACAA+GGG - tig0019233:111518-111537 Msa1371540:intron 35.0%
TATCAAGCTTAAGCTACAAG+GGG - tig0019233:111519-111538 Msa1371540:intron 35.0%
GTTAAATGTTAAGGGGCTAA+TGG - tig0019233:111582-111601 Msa1371540:intron 35.0%
TATTTGCCAAGTACTCCTTA+TGG - tig0019233:112014-112033 Msa1371540:intron 35.0%
TGGATACAAGCATTACCATA+AGG + tig0019233:112032-112051 None:intergenic 35.0%
ATAATATTAGCAGAGCTCAC+AGG + tig0019233:112068-112087 None:intergenic 35.0%
! CTTAGTGGTATTGGATGTAT+TGG - tig0019233:112181-112200 Msa1371540:intron 35.0%
! GTTCGATTTGTAGAATCGAA+AGG + tig0019233:112209-112228 None:intergenic 35.0%
GGATCTTTGGACAGATTTAA+GGG + tig0019233:112542-112561 None:intergenic 35.0%
AGGATCTTTGGACAGATTTA+AGG + tig0019233:112543-112562 None:intergenic 35.0%
TTCAAAAGCTTCAGGATCTT+TGG + tig0019233:112555-112574 None:intergenic 35.0%
! TGATCCACAATGTTTTGTAC+AGG + tig0019233:112668-112687 None:intergenic 35.0%
! TGTGATTTTATTGTTGCGCA+AGG - tig0019233:112945-112964 Msa1371540:CDS 35.0%
! GTGATTTTATTGTTGCGCAA+GGG - tig0019233:112946-112965 Msa1371540:CDS 35.0%
AACAGACCTTCAACAAATGA+AGG + tig0019233:112987-113006 None:intergenic 35.0%
AAAGCAGTTTACAGAGGAGA+GGG + tig0019233:109272-109291 None:intergenic 40.0%
!! ATGTTGTGTTCTGGGTTTTG+GGG + tig0019233:109296-109315 None:intergenic 40.0%
!! GATGTTGTGTTCTGGGTTTT+GGG + tig0019233:109297-109316 None:intergenic 40.0%
!! AGATGTTGTGTTCTGGGTTT+TGG + tig0019233:109298-109317 None:intergenic 40.0%
CAGATGAGATGTTGTGTTCT+GGG + tig0019233:109304-109323 None:intergenic 40.0%
ATCTCATCTGCAATGCTTCA+TGG - tig0019233:109314-109333 Msa1371540:three_prime_UTR 40.0%
!! ATAGCTTTGACAGCAGTGAA+AGG + tig0019233:109376-109395 None:intergenic 40.0%
GCTATAGCTAACAGTCCATT+AGG - tig0019233:109391-109410 Msa1371540:three_prime_UTR 40.0%
! TTCAGCTTTTGGTATGGACA+AGG - tig0019233:109598-109617 Msa1371540:CDS 40.0%
GGTAGCCATCATACGAAATA+GGG + tig0019233:109642-109661 None:intergenic 40.0%
GCTACCCATCATATCTCATT+GGG - tig0019233:109656-109675 Msa1371540:CDS 40.0%
CTACCCATCATATCTCATTG+GGG - tig0019233:109657-109676 Msa1371540:CDS 40.0%
GTTCCCCAATGAGATATGAT+GGG + tig0019233:109663-109682 None:intergenic 40.0%
AGTTCCCCAATGAGATATGA+TGG + tig0019233:109664-109683 None:intergenic 40.0%
!! GATTATGGCTTTGACATTGC+TGG - tig0019233:109691-109710 Msa1371540:CDS 40.0%
CCCAATAGGTCTAATAACTC+AGG + tig0019233:109920-109939 None:intergenic 40.0%
CAAAGTGAAAGACTCCCAAT+AGG + tig0019233:109934-109953 None:intergenic 40.0%
ACTTTGTTGAACCTGTTTGG+TGG - tig0019233:109948-109967 Msa1371540:intron 40.0%
AGAGATAGAACATGCTAACC+TGG + tig0019233:109994-110013 None:intergenic 40.0%
!! ACACTTTTCAGGATCAGCAT+GGG + tig0019233:110176-110195 None:intergenic 40.0%
!! CTGATCCTGAAAAGTGTCAT+GGG - tig0019233:110179-110198 Msa1371540:intron 40.0%
CTTATCAGTTAGCTATGCAG+TGG + tig0019233:110491-110510 None:intergenic 40.0%
ATTGATAGGCTCATAAGGTG+AGG - tig0019233:110525-110544 Msa1371540:intron 40.0%
TCAGTTAGTTATGCAGTGGT+AGG + tig0019233:110806-110825 None:intergenic 40.0%
ATTGATAGGCTCATAAGGTG+AGG - tig0019233:110525-110544 Msa1371540:intron 40.0%
AAAAAACCCAAGTCCCACAT+TGG + tig0019233:110911-110930 None:intergenic 40.0%
! CTTTTTCCCCACCATATAAC+AGG + tig0019233:111069-111088 None:intergenic 40.0%
! CTGTTATATGGTGGGGAAAA+AGG - tig0019233:111067-111086 Msa1371540:intron 40.0%
GAAGCTATTCAGTTCACTTC+TGG - tig0019233:111192-111211 Msa1371540:intron 40.0%
AGGAATACAGATGTCCACAA+GGG + tig0019233:111416-111435 None:intergenic 40.0%
CATCTGTATTCCTGTGTGTA+AGG - tig0019233:111423-111442 Msa1371540:intron 40.0%
! TTGAACATCTGTTGGTTAGG+AGG + tig0019233:111452-111471 None:intergenic 40.0%
! GGTTTGAACATCTGTTGGTT+AGG + tig0019233:111455-111474 None:intergenic 40.0%
ATCAGAAAACTGCACTCTCA+GGG + tig0019233:111484-111503 None:intergenic 40.0%
AATCAGAAAACTGCACTCTC+AGG + tig0019233:111485-111504 None:intergenic 40.0%
GAAAGGACAAGAGAGAAAGA+CGG + tig0019233:111718-111737 None:intergenic 40.0%
TTGGTATAGGGATAAGGGAA+AGG + tig0019233:111735-111754 None:intergenic 40.0%
TGAGTCTTCCAATTTCTGAC+AGG - tig0019233:111921-111940 Msa1371540:intron 40.0%
GAGTCTTCCAATTTCTGACA+GGG - tig0019233:111922-111941 Msa1371540:intron 40.0%
AGTCTTCCAATTTCTGACAG+GGG - tig0019233:111923-111942 Msa1371540:intron 40.0%
!! GCATTACCATAAGGAGTACT+TGG + tig0019233:112023-112042 None:intergenic 40.0%
! CATGGCTTTTAATCCTTCGT+AGG - tig0019233:112235-112254 Msa1371540:intron 40.0%
TTTCAAGAGAACACCTACGA+AGG + tig0019233:112251-112270 None:intergenic 40.0%
CAGAATACGCCAGATATTGT+GGG - tig0019233:112444-112463 Msa1371540:intron 40.0%
TGCTTCAATCCCACAATATC+TGG + tig0019233:112456-112475 None:intergenic 40.0%
ATATTGTGGGATTGAAGCAC+TGG - tig0019233:112457-112476 Msa1371540:intron 40.0%
TTCAGCTCTTCAAAAGCTTC+AGG + tig0019233:112563-112582 None:intergenic 40.0%
GTTAGGTTTCTTCACACAAG+CGG - tig0019233:112625-112644 Msa1371540:CDS 40.0%
AGGTCCTGTACAAAACATTG+TGG - tig0019233:112661-112680 Msa1371540:CDS 40.0%
CAAGTTGTTGTGGAAAGGAT+CGG + tig0019233:112696-112715 None:intergenic 40.0%
! CTTTCCACAACAACTTGCTT+GGG - tig0019233:112699-112718 Msa1371540:intron 40.0%
! AGGAGTCCTTCATTTGTTGA+AGG - tig0019233:112978-112997 Msa1371540:CDS 40.0%
GAAGGCCTGTTGTTAATTAG+AGG + tig0019233:113038-113057 None:intergenic 40.0%
CTAAGAAAGGAGCTATGGTG+TGG - tig0019233:109176-109195 Msa1371540:three_prime_UTR 45.0%
CAAAGCAGTTTACAGAGGAG+AGG + tig0019233:109273-109292 None:intergenic 45.0%
GCAGATGAGATGTTGTGTTC+TGG + tig0019233:109305-109324 None:intergenic 45.0%
!! CTTTGAAGTGACTCCCCTAA+TGG + tig0019233:109409-109428 None:intergenic 45.0%
CTCCTCTAAATTCAAGGCTC+AGG - tig0019233:109465-109484 Msa1371540:three_prime_UTR 45.0%
AGCCTGAGCCTTGAATTTAG+AGG + tig0019233:109470-109489 None:intergenic 45.0%
! GCTTTTGGTATGGACAAGGT+CGG - tig0019233:109602-109621 Msa1371540:CDS 45.0%
CTTGGCCCTATTTCGTATGA+TGG - tig0019233:109634-109653 Msa1371540:CDS 45.0%
GGGTAGCCATCATACGAAAT+AGG + tig0019233:109643-109662 None:intergenic 45.0%
GGCTACCCATCATATCTCAT+TGG - tig0019233:109655-109674 Msa1371540:CDS 45.0%
ATGTCAAAGCCATAATCCCC+AGG + tig0019233:109688-109707 None:intergenic 45.0%
AAGTACCACCCAAGCCATTA+TGG - tig0019233:109751-109770 Msa1371540:CDS 45.0%
! CATAACCATAATGGCTTGGG+TGG + tig0019233:109759-109778 None:intergenic 45.0%
TTGAGATATTGCATGCTCGC+TGG - tig0019233:109864-109883 Msa1371540:intron 45.0%
TGAGATATTGCATGCTCGCT+GGG - tig0019233:109865-109884 Msa1371540:intron 45.0%
!! GACACTTTTCAGGATCAGCA+TGG + tig0019233:110177-110196 None:intergenic 45.0%
!! GCTGATCCTGAAAAGTGTCA+TGG - tig0019233:110178-110197 Msa1371540:intron 45.0%
! GAACTCCCATGACACTTTTC+AGG + tig0019233:110187-110206 None:intergenic 45.0%
TCAGTTAGCTATGCAGTGGT+AGG + tig0019233:110487-110506 None:intergenic 45.0%
GGAGATGACCAAATTCATGC+CGG + tig0019233:110635-110654 None:intergenic 45.0%
GTTAGTTATGCAGTGGTAGG+CGG + tig0019233:110803-110822 None:intergenic 45.0%
GGTGAACAGTACACATACCT+GGG + tig0019233:111255-111274 None:intergenic 45.0%
TGGTGAACAGTACACATACC+TGG + tig0019233:111256-111275 None:intergenic 45.0%
CAGGAATACAGATGTCCACA+AGG + tig0019233:111417-111436 None:intergenic 45.0%
ATCGGGGTTTGAACATCTGT+TGG + tig0019233:111460-111479 None:intergenic 45.0%
AAACTGCACTCTCAGGGAAT+CGG + tig0019233:111478-111497 None:intergenic 45.0%
!! TGTTAAGGGGCTAATGGACT+TGG - tig0019233:111588-111607 Msa1371540:intron 45.0%
!! GTTAAGGGGCTAATGGACTT+GGG - tig0019233:111589-111608 Msa1371540:intron 45.0%
GTCTTCCAATTTCTGACAGG+GGG - tig0019233:111924-111943 Msa1371540:intron 45.0%
AGTATCCCCCTGTCAGAAAT+TGG + tig0019233:111932-111951 None:intergenic 45.0%
GGGGATACTCTAGATTACCT+TGG - tig0019233:111943-111962 Msa1371540:intron 45.0%
TCACAGGACAAGGTGGATAA+TGG + tig0019233:112052-112071 None:intergenic 45.0%
! CATATGGGCTCAAAGAGTAC+TGG + tig0019233:112114-112133 None:intergenic 45.0%
CCACAATATCTGGCGTATTC+TGG + tig0019233:112446-112465 None:intergenic 45.0%
CCAGAATACGCCAGATATTG+TGG - tig0019233:112443-112462 Msa1371540:intron 45.0%
CCAGGCAGATATATTCCTAG+AGG + tig0019233:112485-112504 None:intergenic 45.0%
! CCTCTAGGAATATATCTGCC+TGG - tig0019233:112482-112501 Msa1371540:intron 45.0%
CCAGGGTAGTTTATATCACC+AGG + tig0019233:112503-112522 None:intergenic 45.0%
CCTGGTGATATAAACTACCC+TGG - tig0019233:112500-112519 Msa1371540:intron 45.0%
GGTGATATAAACTACCCTGG+AGG - tig0019233:112503-112522 Msa1371540:intron 45.0%
GATCAAACAATGCTCCTCCA+GGG + tig0019233:112520-112539 None:intergenic 45.0%
AAATGGACGCTTGGCAATGA+TGG - tig0019233:112598-112617 Msa1371540:CDS 45.0%
!! TTGGCAATGATGGCTTGGTT+AGG - tig0019233:112608-112627 Msa1371540:CDS 45.0%
CCAAGCAAGTTGTTGTGGAA+AGG + tig0019233:112701-112720 None:intergenic 45.0%
! CCTTTCCACAACAACTTGCT+TGG - tig0019233:112698-112717 Msa1371540:intron 45.0%
TGGGGCAAAGCAGTTTACAG+AGG + tig0019233:109278-109297 None:intergenic 50.0%
!! CTACCTCTGTTTTCTGGCCT+TGG + tig0019233:109494-109513 None:intergenic 50.0%
! CGGTCACTACCTCTGTTTTC+TGG + tig0019233:109500-109519 None:intergenic 50.0%
TATCTCATTGGGGAACTGCC+TGG - tig0019233:109667-109686 Msa1371540:CDS 50.0%
ATCTCATTGGGGAACTGCCT+GGG - tig0019233:109668-109687 Msa1371540:CDS 50.0%
TGGGCTATGCTTGCATCTGT+TGG - tig0019233:109884-109903 Msa1371540:intron 50.0%
! CGTTGGTTATTCCAAGCTCC+AGG - tig0019233:109973-109992 Msa1371540:intron 50.0%
GAACATGCTAACCTGGAGCT+TGG + tig0019233:109987-110006 None:intergenic 50.0%
GTTAGCTATGCAGTGGTAGG+CGG + tig0019233:110484-110503 None:intergenic 50.0%
GAACAGTACACATACCTGGG+AGG + tig0019233:111252-111271 None:intergenic 50.0%
AACTGCACTCTCAGGGAATC+GGG + tig0019233:111477-111496 None:intergenic 50.0%
CTAGATTACCTTGGCATCCC+AGG - tig0019233:111952-111971 Msa1371540:intron 50.0%
TTCCAGCTAAGTGAAGGCCT+GGG + tig0019233:111972-111991 None:intergenic 50.0%
CTTCACTTAGCTGGAAGCCA+GGG - tig0019233:111976-111995 Msa1371540:intron 50.0%
TAGCAATCACAACCACTCCC+TGG + tig0019233:111996-112015 None:intergenic 50.0%
TTAGCAGAGCTCACAGGACA+AGG + tig0019233:112062-112081 None:intergenic 50.0%
CAGTCATTTGCGTCTGCAGA+TGG - tig0019233:112369-112388 Msa1371540:CDS 50.0%
!! ATTGAAGCACTGGAGCCTCT+AGG - tig0019233:112467-112486 Msa1371540:intron 50.0%
GGATCAAACAATGCTCCTCC+AGG + tig0019233:112521-112540 None:intergenic 50.0%
GTGACCCAAGCAAGTTGTTG+TGG + tig0019233:112706-112725 None:intergenic 50.0%
! GCATTGATGCATTAGAGGCG+TGG - tig0019233:112820-112839 Msa1371540:CDS 50.0%
! CATGGCTGTTGTGCAGGTTT+TGG - tig0019233:112843-112862 Msa1371540:CDS 50.0%
!! AGGTTTTGGCGTGTGACAGT+AGG - tig0019233:112857-112876 Msa1371540:CDS 50.0%
!! TTGCGCAAGGGAGTTTTGTG+AGG - tig0019233:112958-112977 Msa1371540:CDS 50.0%
GCTTCATGGCAAGAGCTTGC+TGG - tig0019233:109328-109347 Msa1371540:three_prime_UTR 55.0%
ATTCAAGGCTCAGGCTGCCA+AGG - tig0019233:109474-109493 Msa1371540:three_prime_UTR 55.0%
CTGCCAAGGCCAGAAAACAG+AGG - tig0019233:109488-109507 Msa1371540:three_prime_UTR 55.0%
GAAATAGGGCCAAGCCAACG+AGG + tig0019233:109628-109647 None:intergenic 55.0%
TCTCATTGGGGAACTGCCTG+GGG - tig0019233:109669-109688 Msa1371540:CDS 55.0%
!! TGACATTGCTGGCCTTGCCA+AGG - tig0019233:109702-109721 Msa1371540:CDS 55.0%
GTTCCACTGGATCCTTGGCA+AGG + tig0019233:109717-109736 None:intergenic 55.0%
CTGCAGTTCCACTGGATCCT+TGG + tig0019233:109722-109741 None:intergenic 55.0%
TAACCAACGCGCCACCAAAC+AGG + tig0019233:109962-109981 None:intergenic 55.0%
AGAGGTTGTTTGCTCCTCCC+AGG - tig0019233:111235-111254 Msa1371540:intron 55.0%
TAGGAGGTCGCCTTACACAC+AGG + tig0019233:111436-111455 None:intergenic 55.0%
ACTGCACTCTCAGGGAATCG+GGG + tig0019233:111476-111495 None:intergenic 55.0%
ATCCCAGGCCTTCACTTAGC+TGG - tig0019233:111967-111986 Msa1371540:intron 55.0%
CTTCCAGCTAAGTGAAGGCC+TGG + tig0019233:111973-111992 None:intergenic 55.0%
CCTGGCTTCCAGCTAAGTGA+AGG + tig0019233:111978-111997 None:intergenic 55.0%
CCTTCACTTAGCTGGAAGCC+AGG - tig0019233:111975-111994 Msa1371540:intron 55.0%
GACGCTTGGCAATGATGGCT+TGG - tig0019233:112603-112622 Msa1371540:CDS 55.0%
! CTTCACACAAGCGGCACTGA+CGG - tig0019233:112634-112653 Msa1371540:CDS 55.0%
!! TTCACACAAGCGGCACTGAC+GGG - tig0019233:112635-112654 Msa1371540:CDS 55.0%
! GATGCATTAGAGGCGTGGCA+TGG - tig0019233:112825-112844 Msa1371540:CDS 55.0%
ATGGACAAGGTCGGCCTCGT+TGG - tig0019233:109611-109630 Msa1371540:CDS 60.0%
GGGGAACTGCCTGGGGATTA+TGG - tig0019233:109676-109695 Msa1371540:CDS 60.0%
! TGGCCTTGCCAAGGATCCAG+TGG - tig0019233:109711-109730 Msa1371540:CDS 60.0%
!! GAACCTGTTTGGTGGCGCGT+TGG - tig0019233:109956-109975 Msa1371540:intron 60.0%
AGTGAAGGCCTGGGATGCCA+AGG + tig0019233:111963-111982 None:intergenic 60.0%
CTTAGCTGGAAGCCAGGGAG+TGG - tig0019233:111981-112000 Msa1371540:intron 60.0%
GCAGAGCTCACAGGACAAGG+TGG + tig0019233:112059-112078 None:intergenic 60.0%
!! CAAGCGGCACTGACGGGTAA+AGG - tig0019233:112641-112660 Msa1371540:CDS 60.0%
! CAAGGTCGGCCTCGTTGGCT+TGG - tig0019233:109616-109635 Msa1371540:CDS 65.0%
GCGTGGCATGGCTGTTGTGC+AGG - tig0019233:112837-112856 Msa1371540:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0019233 gene 109167 113119 109167 ID=Msa1371540;Name=Msa1371540
tig0019233 mRNA 109167 113119 109167 ID=Msa1371540-mRNA-1;Parent=Msa1371540;Name=Msa1371540-mRNA-1;_AED=0.17;_eAED=0.17;_QI=23|1|1|1|1|1|5|371|335
tig0019233 exon 109167 109849 109167 ID=Msa1371540-mRNA-1:exon:2347;Parent=Msa1371540-mRNA-1
tig0019233 exon 110251 110343 110251 ID=Msa1371540-mRNA-1:exon:2346;Parent=Msa1371540-mRNA-1
tig0019233 exon 112292 112424 112292 ID=Msa1371540-mRNA-1:exon:2345;Parent=Msa1371540-mRNA-1
tig0019233 exon 112534 112683 112534 ID=Msa1371540-mRNA-1:exon:2344;Parent=Msa1371540-mRNA-1
tig0019233 exon 112777 113119 112777 ID=Msa1371540-mRNA-1:exon:2343;Parent=Msa1371540-mRNA-1
tig0019233 five_prime_UTR 113097 113119 113097 ID=Msa1371540-mRNA-1:five_prime_utr;Parent=Msa1371540-mRNA-1
tig0019233 CDS 112777 113096 112777 ID=Msa1371540-mRNA-1:cds;Parent=Msa1371540-mRNA-1
tig0019233 CDS 112534 112683 112534 ID=Msa1371540-mRNA-1:cds;Parent=Msa1371540-mRNA-1
tig0019233 CDS 112292 112424 112292 ID=Msa1371540-mRNA-1:cds;Parent=Msa1371540-mRNA-1
tig0019233 CDS 110251 110343 110251 ID=Msa1371540-mRNA-1:cds;Parent=Msa1371540-mRNA-1
tig0019233 CDS 109538 109849 109538 ID=Msa1371540-mRNA-1:cds;Parent=Msa1371540-mRNA-1
tig0019233 three_prime_UTR 109167 109537 109167 ID=Msa1371540-mRNA-1:three_prime_utr;Parent=Msa1371540-mRNA-1
Gene Sequence

>Msa1371540

ATGGTGTGGCTTCAACTTCAATCAGTGACGCGTCCTTCCTCTTCTTCATCTTGTTTCGTTAGTGGCTCTAGTCGCTGCTCCCTCTCCTCTGTAAACTGCTTTGCCCCAAAACCCAGAACACAACATCTCATCTGCAATGCTTCATGGCAAGAGCTTGCTGGAGTTTTACTATTCTCAGCGATTCCTTTCACTGCTGTCAAAGCTATAGCTAACAGTCCATTAGGGGAGTCACTTCAAAGAAAAATGGAAGAGACTAAGCAACTTGCTGTACAAAACTCCTCTAAATTCAAGGCTCAGGCTGCCAAGGCCAGAAAACAGAGCTTTTGGTATGGACAAGGTCGGCCTCGTTGGCTTGGCCCTATTTCGTATGATGGCTACCCATCATATCTCATTGGGGAACTGCCTGGGGATTATGGCTTTGACATTGCTGGCCTTGCCAAGGATCCAGTGGAACTGCAGAAATATTTCAACTTTGAGATATTGCATGCTCGCTGGGCTATGCTTGCATCTGTTGGTGCTCTCATTCCTGAGTTATTAGACCTATTGGGAGTCTTTCACTTTGTTGAACCTGTTTGGTGGCGCGTTGGTTATTCCAAGCTCCAGGGGGATACTCTAGATTACCTTGGCATCCCAGGCCTTCACTTAGCTGGAAGCCAGGGAGTGGTTGTGATTGCTATTTGCCAAGTACTCCTTATGGTTGGACCAGAATACGCCAGATATTGTGGGATTGAAGCACTGGAGCCTCTAGGAATATATCTGCCTGGTGATATAAACTACCCTGGAGGAGCATTGTTTGATCCCTTAAATCTGTCCAAAGATCCTGAAGCTTTTGAAGAGCTGAAAGTGAAAGAAATAAAAAATGGACGCTTGGCAATGATGGCTTGGTTAGGTTTCTTCACACAAGCGGCACTGACGGGTAAAGGTCCTGTACAAAACATTGTGGATCATATCTCCGATCCTTTCCACAACAACTTGCTTGGGTCACTCAATTCAATGAAATTACACTAG

Protein sequence

>Msa1371540

MVWLQLQSVTRPSSSSSCFVSGSSRCSLSSVNCFAPKPRTQHLICNASWQELAGVLLFSAIPFTAVKAIANSPLGESLQRKMEETKQLAVQNSSKFKAQAAKARKQSFWYGQGRPRWLGPISYDGYPSYLIGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAMLASVGALIPELLDLLGVFHFVEPVWWRVGYSKLQGDTLDYLGIPGLHLAGSQGVVVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFEELKVKEIKNGRLAMMAWLGFFTQAALTGKGPVQNIVDHISDPFHNNLLGSLNSMKLH*