AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1202710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1202710 MtrunA17_Chr8g0372871 83.746 283 19 1 1 283 1 256 1.05e-152 426
Msa1202710 MtrunA17_Chr8g0372881 73.835 279 71 1 5 283 10 286 7.23e-151 423
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1202710 AT5G66450.2 53.070 228 99 4 62 283 1 226 1.33e-71 220
Msa1202710 AT5G66450.4 52.609 230 102 3 59 283 58 285 3.66e-71 221
Msa1202710 AT5G66450.1 52.609 230 102 3 59 283 58 285 3.66e-71 221
Msa1202710 AT3G50920.2 52.511 219 102 2 67 283 9 227 2.43e-66 207
Msa1202710 AT3G50920.1 52.511 219 102 2 67 283 60 278 7.33e-66 207
Msa1202710 AT5G66450.5 53.476 187 80 3 59 240 58 242 4.26e-55 179
Msa1202710 AT5G66450.3 54.348 184 77 3 59 237 58 239 2.20e-54 179

Find 124 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATTTCAATGATAATTTA+TGG 0.107697 8_1:-56374379 None:intergenic
GGATATTGATATACGAAATT+TGG 0.130784 8_1:-56374662 None:intergenic
GGTCAGAATCGTTGTTATTT+TGG 0.139850 8_1:+56379085 Msa1202710:CDS
CACAAAAGTTGTTAAGAAAA+TGG 0.193372 8_1:-56374256 None:intergenic
CTTCACAAATTGTAAGTTAA+TGG 0.195993 8_1:-56379610 None:intergenic
CTATCTTGTGGTATTGGTTA+TGG 0.214942 8_1:+56379024 Msa1202710:CDS
CTCACTGCATGTGTATTTAT+AGG 0.215003 8_1:+56379482 Msa1202710:three_prime_UTR
GAATCAAAATAATATGTATC+TGG 0.235073 8_1:-56374095 None:intergenic
CAATTCTTGAATAAACTTCT+TGG 0.251916 8_1:+56372915 Msa1202710:five_prime_UTR
GGTTTGTTCCTTTCAATCTC+TGG 0.253264 8_1:+56375713 Msa1202710:CDS
ATTATAGACTTGCGTATATT+AGG 0.262951 8_1:+56374136 Msa1202710:five_prime_UTR
AGTTGTTTGGCTTTGGCATT+TGG 0.288675 8_1:+56378213 Msa1202710:CDS
CTTTCTCTATCTTGTGGTAT+TGG 0.299724 8_1:+56379018 Msa1202710:CDS
GGTGGACTCTCTTGGGAACT+TGG 0.300510 8_1:+56373712 Msa1202710:five_prime_UTR
ACTCAAACAAATACTTAATC+AGG 0.308287 8_1:+56377193 Msa1202710:CDS
TACCAGCAGTTGTTTGGCTT+TGG 0.320403 8_1:+56378206 Msa1202710:CDS
CTTCAAGATCATTCACTTGT+GGG 0.321620 8_1:+56375692 Msa1202710:CDS
CCATTTCAATGATAATTTAT+GGG 0.326429 8_1:-56374378 None:intergenic
CATAGAGGGTAATAATTGTT+TGG 0.333575 8_1:-56374031 None:intergenic
GCAGAAGCCTTATGGTTTGC+AGG 0.334010 8_1:+56377137 Msa1202710:CDS
CAATTCAAGCGTTGTTGTCT+TGG 0.337886 8_1:+56374534 Msa1202710:five_prime_UTR
GTGGACTCTCTTGGGAACTT+GGG 0.342152 8_1:+56373713 Msa1202710:five_prime_UTR
CACCATTACCAGCAGTTGTT+TGG 0.352388 8_1:+56378200 Msa1202710:CDS
CCCATAAATTATCATTGAAA+TGG 0.356125 8_1:+56374378 Msa1202710:five_prime_UTR
TTCTCAATCCATCTTCTTTG+CGG 0.362994 8_1:+56377262 Msa1202710:CDS
GTGAGACACGAACCAGGTTT+TGG 0.371124 8_1:+56374491 Msa1202710:five_prime_UTR
CTTTGTCGTAGTGTACTGAT+TGG 0.382125 8_1:+56373924 Msa1202710:five_prime_UTR
GGGTCTGCAGTACTTTGCTT+AGG 0.387991 8_1:+56379107 Msa1202710:CDS
AAGTTCTTACATTTACAGTA+TGG 0.389545 8_1:-56379209 None:intergenic
AACAAGAAGCTTTCGTTGAT+AGG 0.397043 8_1:+56375812 Msa1202710:CDS
GTTTGTTCCTTTCAATCTCT+GGG 0.399249 8_1:+56375714 Msa1202710:CDS
GGCATGATGCAGAAGCCTTA+TGG 0.399429 8_1:+56377129 Msa1202710:CDS
CTCTCTCTTTATTCCAGCTC+AGG 0.410644 8_1:-56379393 None:intergenic
TTTGCTGCTTCAACAAGATT+GGG 0.411156 8_1:-56373796 None:intergenic
TTCAATCAGGTGGACTCTCT+TGG 0.422584 8_1:+56373704 Msa1202710:five_prime_UTR
CGTATATTAGGTGCAATTGA+TGG 0.425604 8_1:+56374148 Msa1202710:five_prime_UTR
TTTGTATGTAGTAGACCAAT+TGG 0.426393 8_1:-56379507 None:intergenic
GTGGTTGTTGGAGCTGTTGT+GGG 0.427981 8_1:+56378990 Msa1202710:CDS
AAACATGGGGAAAGAATGAA+TGG 0.435566 8_1:-56379580 None:intergenic
GGGTCAGATTTCACGGTTGA+AGG 0.444202 8_1:-56377221 None:intergenic
GAATGTGAAGACGGCATCCC+AGG 0.445039 8_1:-56377242 None:intergenic
AGTGGTTGTTGGAGCTGTTG+TGG 0.446450 8_1:+56378989 Msa1202710:CDS
CATCCCAGGGTCAGATTTCA+CGG 0.446760 8_1:-56377228 None:intergenic
CTATCCTAGCTCTTTCGAAC+AGG 0.448495 8_1:+56374684 Msa1202710:five_prime_UTR
TCAATCAGGTGGACTCTCTT+GGG 0.448531 8_1:+56373705 Msa1202710:five_prime_UTR
TACTGTAAATGTAAGAACTT+GGG 0.450503 8_1:+56379212 Msa1202710:three_prime_UTR
TGGACTCTCTTGGGAACTTG+GGG 0.451284 8_1:+56373714 Msa1202710:five_prime_UTR
GTATCTGGGATTCTTTCAAA+TGG 0.453583 8_1:-56374080 None:intergenic
TGGATAGTAAGTGCCCTCTT+TGG 0.458814 8_1:+56377089 Msa1202710:CDS
AAACATGACCGCAAAGAAGA+TGG 0.468037 8_1:-56377270 None:intergenic
CACATTTAACTTAAGTGCAT+GGG 0.480127 8_1:+56374173 Msa1202710:five_prime_UTR
GAATTGAATTGATTAACAAA+TGG 0.485878 8_1:-56372898 None:intergenic
AGCCAAACAACTGCTGGTAA+TGG 0.486744 8_1:-56378202 None:intergenic
ATACTGTAAATGTAAGAACT+TGG 0.491240 8_1:+56379211 Msa1202710:three_prime_UTR
AGTGTACTGATTGGGTTGGT+TGG 0.492101 8_1:+56373933 Msa1202710:five_prime_UTR
ATAGCGCATAGCAGTTGTTA+AGG 0.494577 8_1:-56379324 None:intergenic
GCTTCAAGATCATTCACTTG+TGG 0.496350 8_1:+56375691 Msa1202710:CDS
ACACATTTAACTTAAGTGCA+TGG 0.497100 8_1:+56374172 Msa1202710:five_prime_UTR
ACAGTGAGCCAAGTGGTTGT+TGG 0.497938 8_1:+56378978 Msa1202710:CDS
GTGTATTTATAGGCACCAAT+TGG 0.500619 8_1:+56379492 Msa1202710:three_prime_UTR
TGATTAACAAATGGAAAGTG+TGG 0.503563 8_1:-56372889 None:intergenic
TTTACATTCCGATTGTATCT+GGG 0.506546 8_1:-56373972 None:intergenic
AATCAAAATAATATGTATCT+GGG 0.507328 8_1:-56374094 None:intergenic
ATTGATTTACAAAGAAAATG+AGG 0.507557 8_1:-56374349 None:intergenic
TGCCAAAGCCAAACAACTGC+TGG 0.514847 8_1:-56378208 None:intergenic
GAAAAGAGGAAGTGATATGT+TGG 0.514955 8_1:-56379354 None:intergenic
TGTGAAGCTAACAAGCAGAT+AGG 0.515728 8_1:+56373825 Msa1202710:five_prime_UTR
CAATCAGTACACTACGACAA+AGG 0.522739 8_1:-56373923 None:intergenic
TTTGTCGTAGTGTACTGATT+GGG 0.532387 8_1:+56373925 Msa1202710:five_prime_UTR
TAAGAGTTGATTCCACGTCC+TGG 0.534079 8_1:-56375864 None:intergenic
TAGAGAATCCCAGATACAAT+CGG 0.538835 8_1:+56373964 Msa1202710:five_prime_UTR
AAATACACATGCAGTGAGCA+AGG 0.539114 8_1:-56379477 None:intergenic
GTAAGAACTGCTCAGAGAGA+TGG 0.542961 8_1:+56375760 Msa1202710:CDS
CAGAAGCCTTATGGTTTGCA+GGG 0.543056 8_1:+56377138 Msa1202710:CDS
CAACAGCTCCAACAACCACT+TGG 0.543736 8_1:-56378986 None:intergenic
AGAACAACATTGCTGAAAAG+AGG 0.545590 8_1:-56379368 None:intergenic
GGTCAACTTTCTCTATCTTG+TGG 0.546263 8_1:+56379012 Msa1202710:CDS
ACCCTCTATGCATTCTAACA+AGG 0.546564 8_1:+56374044 Msa1202710:five_prime_UTR
GAAGCCTTATGGTTTGCAGG+GGG 0.547181 8_1:+56377140 Msa1202710:CDS
AGGAAGTGATATGTTGGAGT+GGG 0.552093 8_1:-56379348 None:intergenic
GTTACCTGTTCGAAAGAGCT+AGG 0.552639 8_1:-56374688 None:intergenic
CCCTTGTTAGAATGCATAGA+GGG 0.556342 8_1:-56374045 None:intergenic
GTTAATGGTAGAAGAAAACA+TGG 0.562383 8_1:-56379595 None:intergenic
GCTGTTGTTTACAGAGCAAG+TGG 0.563321 8_1:+56377069 Msa1202710:intron
CAGAGAGATGGAAAGAGTGA+TGG 0.564058 8_1:+56375772 Msa1202710:CDS
ATAGCAAAGCGTGGCTGTTG+CGG 0.565629 8_1:-56375587 None:intergenic
CAACCGTGAAATCTGACCCT+GGG 0.567329 8_1:+56377225 Msa1202710:CDS
TTTACTTGTATTCAATCAGG+TGG 0.568740 8_1:+56373694 Msa1202710:five_prime_UTR
GGAATCAACTCTTAATCGAC+TGG 0.570438 8_1:+56375873 Msa1202710:CDS
ACCCTTGTTAGAATGCATAG+AGG 0.577285 8_1:-56374046 None:intergenic
TCAACCGTGAAATCTGACCC+TGG 0.578334 8_1:+56377224 Msa1202710:CDS
AATGTTGTTCTATCCTGAGC+TGG 0.585987 8_1:+56379380 Msa1202710:three_prime_UTR
AACATGGGGAAAGAATGAAT+GGG 0.586785 8_1:-56379579 None:intergenic
AAGCCTTATGGTTTGCAGGG+GGG 0.591130 8_1:+56377141 Msa1202710:CDS
TCGTAGTGTACTGATTGGGT+TGG 0.591209 8_1:+56373929 Msa1202710:five_prime_UTR
GATCTTGAAGCAGATAAACT+AGG 0.591700 8_1:-56375679 None:intergenic
CTCACAAGATAAAATAACAT+GGG 0.592019 8_1:-56374473 None:intergenic
AAAACACAGTGGTTAGCTGT+AGG 0.596490 8_1:-56374228 None:intergenic
GCGTGGCTGTTGCGGTCATG+TGG 0.598281 8_1:-56375579 None:intergenic
CTGTTCGAAAGAGCTAGGAT+AGG 0.600124 8_1:-56374683 None:intergenic
AACGATTCTGACCCACAAAG+AGG 0.600535 8_1:-56379075 None:intergenic
ATGGATTGAGAATGTGAAGA+CGG 0.609166 8_1:-56377251 None:intergenic
AATACACATGCAGTGAGCAA+GGG 0.609500 8_1:-56379476 None:intergenic
GCTATCAATAAGCTCATACT+CGG 0.609685 8_1:-56373853 None:intergenic
AATGTGAAGACGGCATCCCA+GGG 0.613656 8_1:-56377241 None:intergenic
CCCTCTATGCATTCTAACAA+GGG 0.616784 8_1:+56374045 Msa1202710:five_prime_UTR
GAGGAAGTGATATGTTGGAG+TGG 0.618288 8_1:-56379349 None:intergenic
TCTCACAAGATAAAATAACA+TGG 0.618965 8_1:-56374474 None:intergenic
TGGGTGAAAAGTGCGATGGA+TGG 0.619297 8_1:+56375733 Msa1202710:CDS
ACGTTAAACAAGTACTACGT+TGG 0.621635 8_1:+56374573 Msa1202710:five_prime_UTR
ACTGTAAATGTAAGAACTTG+GGG 0.632523 8_1:+56379213 Msa1202710:three_prime_UTR
TATCTTGTGAGACACGAACC+AGG 0.639692 8_1:+56374485 Msa1202710:five_prime_UTR
AGAAGCCTTATGGTTTGCAG+GGG 0.644085 8_1:+56377139 Msa1202710:CDS
GGACTCTCTTGGGAACTTGG+GGG 0.647782 8_1:+56373715 Msa1202710:five_prime_UTR
TGGTTGTTGGAGCTGTTGTG+GGG 0.650107 8_1:+56378991 Msa1202710:CDS
TTAATGGTAGAAGAAAACAT+GGG 0.653817 8_1:-56379594 None:intergenic
TCACAAGATAAAATAACATG+GGG 0.657552 8_1:-56374472 None:intergenic
TAATGGTAGAAGAAAACATG+GGG 0.673817 8_1:-56379593 None:intergenic
TCTCTGGGTGAAAAGTGCGA+TGG 0.680175 8_1:+56375729 Msa1202710:CDS
AACAACGCTTGAATTGATGA+CGG 0.682051 8_1:-56374527 None:intergenic
AGATGGATTATAGCAAAGCG+TGG 0.685105 8_1:-56375596 None:intergenic
AACGCTTGAATTGATGACGG+TGG 0.706454 8_1:-56374524 None:intergenic
ACTTCATACAGTGAGCCAAG+TGG 0.707082 8_1:+56378971 Msa1202710:CDS
TTTAACGTGTGATGATAGTG+CGG 0.716202 8_1:-56374558 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATATATTATTTTTGAC+AGG + chr8_1:56373445-56373464 Msa1202710:intron 10.0%
!!! ATTTTAGTTTTTAGTAATTA+TGG + chr8_1:56373471-56373490 Msa1202710:intron 10.0%
!!! TATATGTTTTTTTTTTCTAT+AGG + chr8_1:56373634-56373653 Msa1202710:intron 10.0%
!!! ATTTTAGTTATAAGTAATTA+TGG + chr8_1:56374853-56374872 Msa1202710:intron 10.0%
!!! TATATTTTTATATGTTTCTT+TGG + chr8_1:56378138-56378157 Msa1202710:intron 10.0%
!!! AGTTTTTTAGTATATTTTTT+TGG - chr8_1:56378796-56378815 None:intergenic 10.0%
!! TATATCTCAAATTTAATTGT+AGG - chr8_1:56373539-56373558 None:intergenic 15.0%
!! AATCAAAATAATATGTATCT+GGG - chr8_1:56374097-56374116 None:intergenic 15.0%
!! TTATAACTAAAATTCAAAAG+GGG - chr8_1:56374846-56374865 None:intergenic 15.0%
!! CTTATAACTAAAATTCAAAA+GGG - chr8_1:56374847-56374866 None:intergenic 15.0%
!! ACTTATAACTAAAATTCAAA+AGG - chr8_1:56374848-56374867 None:intergenic 15.0%
!! ATATAATTATTGCAAAAGAA+AGG + chr8_1:56376104-56376123 Msa1202710:intron 15.0%
!! AAATATGAAGATTGAAAAAA+AGG - chr8_1:56376337-56376356 None:intergenic 15.0%
!! CATTTCCTTATAAAAAATAA+CGG - chr8_1:56376803-56376822 None:intergenic 15.0%
!! AGGTAAAAATAACAAATTTA+TGG - chr8_1:56376832-56376851 None:intergenic 15.0%
!! TTAATATTGTGTAATTGTAA+AGG + chr8_1:56376895-56376914 Msa1202710:intron 15.0%
!! ATTATATTAAGTGAACATTA+AGG + chr8_1:56377018-56377037 Msa1202710:intron 15.0%
!!! ATTATGTATTCTTTAGAAAA+TGG + chr8_1:56377403-56377422 Msa1202710:intron 15.0%
!! GAATTGAATTGATTAACAAA+TGG - chr8_1:56372901-56372920 None:intergenic 20.0%
!! TTACTGAATTGAATTATTGT+AGG + chr8_1:56373227-56373246 Msa1202710:intron 20.0%
!! TTAATAATTAACAACTGTCT+TGG - chr8_1:56373422-56373441 None:intergenic 20.0%
!!! ATTTTGTTTTTTCGTATAAG+TGG + chr8_1:56373995-56374014 Msa1202710:five_prime_UTR 20.0%
!! GAATCAAAATAATATGTATC+TGG - chr8_1:56374098-56374117 None:intergenic 20.0%
!!! ATTGATTTACAAAGAAAATG+AGG - chr8_1:56374352-56374371 None:intergenic 20.0%
!! CCATTTCAATGATAATTTAT+GGG - chr8_1:56374381-56374400 None:intergenic 20.0%
!! ACCATTTCAATGATAATTTA+TGG - chr8_1:56374382-56374401 None:intergenic 20.0%
!!! TAATTCGTTTAACTTTTTAG+CGG + chr8_1:56374427-56374446 Msa1202710:five_prime_UTR 20.0%
!! TTCACGAATTGATTAAAAAA+TGG - chr8_1:56374627-56374646 None:intergenic 20.0%
!! ATAAGTAAACAAGAATCAAA+TGG - chr8_1:56375357-56375376 None:intergenic 20.0%
!!! TTTTTCAAGTATCTTTGTTT+AGG - chr8_1:56375646-56375665 None:intergenic 20.0%
!!! ATTTATCTTTTTCTATTGTG+TGG + chr8_1:56375973-56375992 Msa1202710:intron 20.0%
!!! ATTTTATTGAAGAAATAGAC+TGG + chr8_1:56376026-56376045 Msa1202710:intron 20.0%
!! TGCAATAATTATATCATCAA+CGG - chr8_1:56376098-56376117 None:intergenic 20.0%
!!! GACAAAAAGATTTTAAAACT+TGG + chr8_1:56376128-56376147 Msa1202710:intron 20.0%
!! TCAAAAAATTTAGCATCATT+TGG + chr8_1:56376488-56376507 Msa1202710:intron 20.0%
!!! TATCACCGTTATTTTTTATA+AGG + chr8_1:56376795-56376814 Msa1202710:intron 20.0%
!!! TGCAATTTCAGTTTTAATAT+GGG - chr8_1:56376958-56376977 None:intergenic 20.0%
!!! TTGCAATTTCAGTTTTAATA+TGG - chr8_1:56376959-56376978 None:intergenic 20.0%
!! GTTCACTTAATATAATACAA+TGG - chr8_1:56377014-56377033 None:intergenic 20.0%
!! ATCATTTGAATGGAAATAAA+AGG - chr8_1:56377322-56377341 None:intergenic 20.0%
!! CCATATAGGATTTAATATAT+AGG - chr8_1:56377623-56377642 None:intergenic 20.0%
!! CCTATATATTAAATCCTATA+TGG + chr8_1:56377620-56377639 Msa1202710:intron 20.0%
!! TGTCAAAAAATTAATTGATG+TGG + chr8_1:56377663-56377682 Msa1202710:intron 20.0%
!! ATGCAATTCTATTGTATTTA+TGG - chr8_1:56378115-56378134 None:intergenic 20.0%
!! GATATACTAGTAAACTAAAT+TGG - chr8_1:56378266-56378285 None:intergenic 20.0%
!! AGTATATAATGTTAGTAGTT+AGG - chr8_1:56378688-56378707 None:intergenic 20.0%
!!! TTAGTATATTTTTTTGGTAG+TGG - chr8_1:56378790-56378809 None:intergenic 20.0%
! CAATTCTTGAATAAACTTCT+TGG + chr8_1:56372915-56372934 Msa1202710:five_prime_UTR 25.0%
! CAAAAATCAAAATGAATGTG+AGG - chr8_1:56372981-56373000 None:intergenic 25.0%
!!! ATTTTGATTTTTGTTGTTGC+TGG + chr8_1:56372988-56373007 Msa1202710:intron 25.0%
!! TGGAATTTCTTTTATTCCTT+TGG + chr8_1:56373008-56373027 Msa1202710:intron 25.0%
! GGATGTGAATTTATTAGAAA+TGG + chr8_1:56373119-56373138 Msa1202710:intron 25.0%
! TCATTCTCATATCACAAAAA+TGG - chr8_1:56373194-56373213 None:intergenic 25.0%
! TGATATGAGAATGAATGAAA+TGG + chr8_1:56373200-56373219 Msa1202710:intron 25.0%
!! TTTGAGATATATTCAATGAG+AGG + chr8_1:56373548-56373567 Msa1202710:intron 25.0%
!! GTTTTTACTTGTATTCAATC+AGG + chr8_1:56373691-56373710 Msa1202710:five_prime_UTR 25.0%
! ATTATAGACTTGCGTATATT+AGG + chr8_1:56374136-56374155 Msa1202710:five_prime_UTR 25.0%
! CACAAAAGTTGTTAAGAAAA+TGG - chr8_1:56374259-56374278 None:intergenic 25.0%
! CCCATAAATTATCATTGAAA+TGG + chr8_1:56374378-56374397 Msa1202710:five_prime_UTR 25.0%
! TCACAAGATAAAATAACATG+GGG - chr8_1:56374475-56374494 None:intergenic 25.0%
! CTCACAAGATAAAATAACAT+GGG - chr8_1:56374476-56374495 None:intergenic 25.0%
! TCTCACAAGATAAAATAACA+TGG - chr8_1:56374477-56374496 None:intergenic 25.0%
! TGATTAAAAAATGGAAAGTG+TGG - chr8_1:56374618-56374637 None:intergenic 25.0%
! GGATATTGATATACGAAATT+TGG - chr8_1:56374665-56374684 None:intergenic 25.0%
! CAAAAATTACAGCATAAAAG+GGG - chr8_1:56374772-56374791 None:intergenic 25.0%
! CCAAAAATTACAGCATAAAA+GGG - chr8_1:56374773-56374792 None:intergenic 25.0%
! ACCAAAAATTACAGCATAAA+AGG - chr8_1:56374774-56374793 None:intergenic 25.0%
! TTCTAATTATAACTCCTCTT+GGG + chr8_1:56374904-56374923 Msa1202710:intron 25.0%
!! CTATTTCTTATATAACTTGC+TGG - chr8_1:56374946-56374965 None:intergenic 25.0%
! ACATAAATCTAGATCATACT+CGG - chr8_1:56375070-56375089 None:intergenic 25.0%
! ATTATAGACTTGCATAGATT+AGG + chr8_1:56375417-56375436 Msa1202710:intron 25.0%
! TGATGTATAAAAAAAGACAG+TGG - chr8_1:56375523-56375542 None:intergenic 25.0%
!!! ACTGTCTTTTTTTATACATC+AGG + chr8_1:56375522-56375541 Msa1202710:intron 25.0%
!!! ATCCATCTAACAATTTTTTG+AGG + chr8_1:56375611-56375630 Msa1202710:CDS 25.0%
! ATGAGCAGAAAAAACAATAT+AGG - chr8_1:56375955-56375974 None:intergenic 25.0%
! TATCCATTCTTAATAGCTTA+AGG + chr8_1:56376168-56376187 Msa1202710:intron 25.0%
! ATCCATTCTTAATAGCTTAA+GGG + chr8_1:56376169-56376188 Msa1202710:intron 25.0%
! TTAGATTTGTATGATAGGAT+AGG - chr8_1:56376281-56376300 None:intergenic 25.0%
!!! TGGTTTTAGATTTGTATGAT+AGG - chr8_1:56376286-56376305 None:intergenic 25.0%
! TTGTCAAAAGAAAAACCATT+TGG + chr8_1:56376688-56376707 Msa1202710:intron 25.0%
! AAACCAAGTTTAGATTCTTA+AGG + chr8_1:56376718-56376737 Msa1202710:intron 25.0%
!!! TATTTCAAGTTGTGAAGAAA+AGG - chr8_1:56376852-56376871 None:intergenic 25.0%
! AATAACAAAAACACCAAAGA+GGG - chr8_1:56377105-56377124 None:intergenic 25.0%
! AAATAACAAAAACACCAAAG+AGG - chr8_1:56377106-56377125 None:intergenic 25.0%
!!! TCTTTGGTGTTTTTGTTATT+TGG + chr8_1:56377105-56377124 Msa1202710:CDS 25.0%
! ACTCAAACAAATACTTAATC+AGG + chr8_1:56377193-56377212 Msa1202710:CDS 25.0%
! TTTGAATGGAAATAAAAGGT+GGG - chr8_1:56377318-56377337 None:intergenic 25.0%
! ATTTGAATGGAAATAAAAGG+TGG - chr8_1:56377319-56377338 None:intergenic 25.0%
! TTTGTAATCGATCATTTGAA+TGG - chr8_1:56377332-56377351 None:intergenic 25.0%
! ACATCAATTCTTAACCATAT+AGG - chr8_1:56377637-56377656 None:intergenic 25.0%
! TATATGGTTAAGAATTGATG+TGG + chr8_1:56377636-56377655 Msa1202710:intron 25.0%
! TTGACAGTCAAATATCTATT+TGG - chr8_1:56377909-56377928 None:intergenic 25.0%
! TTGAAACAAAACAGAGATAA+TGG - chr8_1:56377954-56377973 None:intergenic 25.0%
! ATTCTTCTAGATGAATATTC+TGG - chr8_1:56378001-56378020 None:intergenic 25.0%
! ACATAAATTTGATCTCATAC+AGG + chr8_1:56378413-56378432 Msa1202710:intron 25.0%
! CATAAATTTGATCTCATACA+GGG + chr8_1:56378414-56378433 Msa1202710:intron 25.0%
! AACATATTATGTGCACTAAA+TGG - chr8_1:56378888-56378907 None:intergenic 25.0%
! AAGTTCTTACATTTACAGTA+TGG - chr8_1:56379212-56379231 None:intergenic 25.0%
! ATACTGTAAATGTAAGAACT+TGG + chr8_1:56379211-56379230 Msa1202710:three_prime_UTR 25.0%
! TACTGTAAATGTAAGAACTT+GGG + chr8_1:56379212-56379231 Msa1202710:three_prime_UTR 25.0%
! TTAATGGTAGAAGAAAACAT+GGG - chr8_1:56379597-56379616 None:intergenic 25.0%
TGATTAACAAATGGAAAGTG+TGG - chr8_1:56372892-56372911 None:intergenic 30.0%
!! GGTGGATTTGAATTTTGAAA+CGG + chr8_1:56373051-56373070 Msa1202710:intron 30.0%
!!! GTGGATTTGAATTTTGAAAC+GGG + chr8_1:56373052-56373071 Msa1202710:intron 30.0%
!!! AGTTTGGTTTCTTGTTGTTT+TGG + chr8_1:56373075-56373094 Msa1202710:intron 30.0%
! ATTAGAAATGGACTTGAATG+TGG + chr8_1:56373131-56373150 Msa1202710:intron 30.0%
! TTAGAAATGGACTTGAATGT+GGG + chr8_1:56373132-56373151 Msa1202710:intron 30.0%
TTTACTTGTATTCAATCAGG+TGG + chr8_1:56373694-56373713 Msa1202710:five_prime_UTR 30.0%
TTTACATTCCGATTGTATCT+GGG - chr8_1:56373975-56373994 None:intergenic 30.0%
! TTTTACATTCCGATTGTATC+TGG - chr8_1:56373976-56373995 None:intergenic 30.0%
CATAGAGGGTAATAATTGTT+TGG - chr8_1:56374034-56374053 None:intergenic 30.0%
! ACACATTTAACTTAAGTGCA+TGG + chr8_1:56374172-56374191 Msa1202710:five_prime_UTR 30.0%
! CACATTTAACTTAAGTGCAT+GGG + chr8_1:56374173-56374192 Msa1202710:five_prime_UTR 30.0%
AAATGGTTGAAAAAACACAG+TGG - chr8_1:56374242-56374261 None:intergenic 30.0%
! ACTTTATCTCTCTTTTGTTC+TGG + chr8_1:56374313-56374332 Msa1202710:five_prime_UTR 30.0%
CAGAAATCAAAATGAATGTG+AGG - chr8_1:56374717-56374736 None:intergenic 30.0%
!!! ATTTTGATTTCTGTTGTTGC+TGG + chr8_1:56374724-56374743 Msa1202710:intron 30.0%
! CCCTTTTATGCTGTAATTTT+TGG + chr8_1:56374770-56374789 Msa1202710:intron 30.0%
CTTCTAATTATAACTCCTCT+TGG + chr8_1:56374903-56374922 Msa1202710:intron 30.0%
TCTGTCCTAATGTACTTATT+GGG + chr8_1:56375163-56375182 Msa1202710:intron 30.0%
TTTACATTCCGATTGTATCT+GGG - chr8_1:56373975-56373994 None:intergenic 30.0%
! TTTTACATTCCGATTGTATC+TGG - chr8_1:56373976-56373995 None:intergenic 30.0%
GTTTATCGTAGTTGTATAAG+TGG + chr8_1:56375238-56375257 Msa1202710:intron 30.0%
CATAGATTAGGTTCAATTGA+CGG + chr8_1:56375429-56375448 Msa1202710:intron 30.0%
! ACACATTTAACTTAAGTGGA+TGG + chr8_1:56375453-56375472 Msa1202710:intron 30.0%
! CACATTTAACTTAAGTGGAT+GGG + chr8_1:56375454-56375473 Msa1202710:intron 30.0%
GTCCTCAAAAAATTGTTAGA+TGG - chr8_1:56375616-56375635 None:intergenic 30.0%
TATTGATGAATCTGAATCTC+TGG - chr8_1:56376074-56376093 None:intergenic 30.0%
AACAACCAAAGTGAATAACT+TGG + chr8_1:56376223-56376242 Msa1202710:intron 30.0%
GTTATCCAAGTTATTCACTT+TGG - chr8_1:56376231-56376250 None:intergenic 30.0%
AGCATACTTTGATATAGTCA+AGG + chr8_1:56376383-56376402 Msa1202710:intron 30.0%
CATCATTTGGAAAATGTTCA+GGG + chr8_1:56376501-56376520 Msa1202710:intron 30.0%
! TATTTGAAATTGCTCCAAGA+AGG - chr8_1:56376551-56376570 None:intergenic 30.0%
!!! CTTGGTTTTTTAGTTCCAAA+TGG - chr8_1:56376706-56376725 None:intergenic 30.0%
TAAGTGAACATTAAGGTATG+AGG + chr8_1:56377025-56377044 Msa1202710:intron 30.0%
AAGTGAACATTAAGGTATGA+GGG + chr8_1:56377026-56377045 Msa1202710:intron 30.0%
!!! TTGGTGTTTTTGTTATTTGG+AGG + chr8_1:56377108-56377127 Msa1202710:CDS 30.0%
! GATAGTTTGAAGTTTGAACT+TGG + chr8_1:56377685-56377704 Msa1202710:intron 30.0%
AGGAAATTGAGTGAAAACAA+GGG + chr8_1:56377839-56377858 Msa1202710:intron 30.0%
TGAATATTCTGGCAACTATT+TGG - chr8_1:56377990-56378009 None:intergenic 30.0%
!!! CTTTTTTATTCTCGTATCCT+TGG + chr8_1:56378285-56378304 Msa1202710:intron 30.0%
! TTTTGTGTACTTCATGACAT+TGG + chr8_1:56378330-56378349 Msa1202710:intron 30.0%
! AAGACTATGATGGAAAGTTA+AGG - chr8_1:56378359-56378378 None:intergenic 30.0%
TAACAAAGTTCTTGTGAAGA+GGG - chr8_1:56378453-56378472 None:intergenic 30.0%
!! ACATCCAAAGGATTTTGAAA+AGG + chr8_1:56378645-56378664 Msa1202710:intron 30.0%
! ATCTCCTTTTCAAAATCCTT+TGG - chr8_1:56378652-56378671 None:intergenic 30.0%
GACAATGCATAATATATGCA+AGG + chr8_1:56378745-56378764 Msa1202710:intron 30.0%
!!! ATATTTTTTTGGTAGTGGCT+GGG - chr8_1:56378785-56378804 None:intergenic 30.0%
!!! TATATTTTTTTGGTAGTGGC+TGG - chr8_1:56378786-56378805 None:intergenic 30.0%
AAACTAACATTCGCTTAGTA+TGG + chr8_1:56378811-56378830 Msa1202710:intron 30.0%
!!! ATGCTTTTTTATCCTCTTTG+TGG + chr8_1:56379063-56379082 Msa1202710:CDS 30.0%
!!! TGCTTTTTTATCCTCTTTGT+GGG + chr8_1:56379064-56379083 Msa1202710:CDS 30.0%
!!! GTCAGAATCGTTGTTATTTT+GGG + chr8_1:56379086-56379105 Msa1202710:CDS 30.0%
!!! TCAGAATCGTTGTTATTTTG+GGG + chr8_1:56379087-56379106 Msa1202710:CDS 30.0%
! CTTAGGTTTTCTTTTACATG+TGG + chr8_1:56379124-56379143 Msa1202710:CDS 30.0%
ACTGTAAATGTAAGAACTTG+GGG + chr8_1:56379213-56379232 Msa1202710:three_prime_UTR 30.0%
CTTGCTTTCTCACAAAAATT+CGG + chr8_1:56379446-56379465 Msa1202710:three_prime_UTR 30.0%
TTTGTATGTAGTAGACCAAT+TGG - chr8_1:56379510-56379529 None:intergenic 30.0%
TAATGGTAGAAGAAAACATG+GGG - chr8_1:56379596-56379615 None:intergenic 30.0%
GTTAATGGTAGAAGAAAACA+TGG - chr8_1:56379598-56379617 None:intergenic 30.0%
!!! GCTGCTGTAATTTTTGGAAT+TGG + chr8_1:56373030-56373049 Msa1202710:intron 35.0%
!!! GCTGTAATTTTTGGAATTGG+TGG + chr8_1:56373033-56373052 Msa1202710:intron 35.0%
!!! TGAATTTTGAAACGGGAGTT+TGG + chr8_1:56373059-56373078 Msa1202710:intron 35.0%
TGCTCGTATCAGAATTTATG+TGG + chr8_1:56373098-56373117 Msa1202710:intron 35.0%
! TAGAAATGGACTTGAATGTG+GGG + chr8_1:56373133-56373152 Msa1202710:intron 35.0%
TCTCTACAAGAAACTCAAAG+AGG - chr8_1:56373164-56373183 None:intergenic 35.0%
! GTTTACTCTTTGTACTGGTA+GGG - chr8_1:56373305-56373324 None:intergenic 35.0%
TCTTGGTTTACTCTTTGTAC+TGG - chr8_1:56373310-56373329 None:intergenic 35.0%
AGCAGTTGGAGTATATATCT+TGG - chr8_1:56373327-56373346 None:intergenic 35.0%
AAGATATATACTCCAACTGC+TGG + chr8_1:56373326-56373345 Msa1202710:intron 35.0%
TATTCAATGAGAGGAGATTC+TGG + chr8_1:56373557-56373576 Msa1202710:intron 35.0%
! TTTGCTGCTTCAACAAGATT+GGG - chr8_1:56373799-56373818 None:intergenic 35.0%
!! TTTTGCTGCTTCAACAAGAT+TGG - chr8_1:56373800-56373819 None:intergenic 35.0%
GCTATCAATAAGCTCATACT+CGG - chr8_1:56373856-56373875 None:intergenic 35.0%
!! TTTGTCGTAGTGTACTGATT+GGG + chr8_1:56373925-56373944 Msa1202710:five_prime_UTR 35.0%
TAGAGAATCCCAGATACAAT+CGG + chr8_1:56373964-56373983 Msa1202710:five_prime_UTR 35.0%
! GTATCTGGGATTCTTTCAAA+TGG - chr8_1:56374083-56374102 None:intergenic 35.0%
CGTATATTAGGTGCAATTGA+TGG + chr8_1:56374148-56374167 Msa1202710:five_prime_UTR 35.0%
AACAACGCTTGAATTGATGA+CGG - chr8_1:56374530-56374549 None:intergenic 35.0%
! TTTAACGTGTGATGATAGTG+CGG - chr8_1:56374561-56374580 None:intergenic 35.0%
ACGTTAAACAAGTACTACGT+TGG + chr8_1:56374573-56374592 Msa1202710:five_prime_UTR 35.0%
! TGTGTGATGATTCTGAGAAT+TGG + chr8_1:56374793-56374812 Msa1202710:intron 35.0%
CAATAAGTACATTAGGACAG+AGG - chr8_1:56375164-56375183 None:intergenic 35.0%
CTCTGTCCTAATGTACTTAT+TGG + chr8_1:56375162-56375181 Msa1202710:intron 35.0%
TCCTAATGTACTTATTGGGT+TGG + chr8_1:56375167-56375186 Msa1202710:intron 35.0%
ACCAACCCAATAAGTACATT+AGG - chr8_1:56375171-56375190 None:intergenic 35.0%
AAGAGAATCCCAGATACAAT+CGG + chr8_1:56375202-56375221 Msa1202710:intron 35.0%
ACCCTCTATGTATTCTAACA+AGG + chr8_1:56375311-56375330 Msa1202710:intron 35.0%
CCCTTGTTAGAATACATAGA+GGG - chr8_1:56375315-56375334 None:intergenic 35.0%
CCCTCTATGTATTCTAACAA+GGG + chr8_1:56375312-56375331 Msa1202710:intron 35.0%
ACCCTTGTTAGAATACATAG+AGG - chr8_1:56375316-56375335 None:intergenic 35.0%
! CGGTACACATTTAACTTAAG+TGG + chr8_1:56375449-56375468 Msa1202710:intron 35.0%
GATCTTGAAGCAGATAAACT+AGG - chr8_1:56375682-56375701 None:intergenic 35.0%
CTTCAAGATCATTCACTTGT+GGG + chr8_1:56375692-56375711 Msa1202710:CDS 35.0%
GTTTGTTCCTTTCAATCTCT+GGG + chr8_1:56375714-56375733 Msa1202710:CDS 35.0%
AACAAGAAGCTTTCGTTGAT+AGG + chr8_1:56375812-56375831 Msa1202710:CDS 35.0%
CTAACATGGAGTGGTAATTT+AGG - chr8_1:56375917-56375936 None:intergenic 35.0%
CTATTGTGTGGAATGAGTAT+AGG + chr8_1:56375985-56376004 Msa1202710:intron 35.0%
AGCCCTTAAGCTATTAAGAA+TGG - chr8_1:56376174-56376193 None:intergenic 35.0%
TTCAACCAGTTTGGACTTTA+TGG - chr8_1:56376205-56376224 None:intergenic 35.0%
ACTTGGATAACAAACCGATA+AGG + chr8_1:56376240-56376259 Msa1202710:intron 35.0%
TTTGTATGATAGGATAGGCT+CGG - chr8_1:56376276-56376295 None:intergenic 35.0%
TAAAACCAACTCTAGTGCTT+TGG + chr8_1:56376298-56376317 Msa1202710:intron 35.0%
! AAAATCCAAAGCACTAGAGT+TGG - chr8_1:56376306-56376325 None:intergenic 35.0%
!! AACTCTAGTGCTTTGGATTT+TGG + chr8_1:56376305-56376324 Msa1202710:intron 35.0%
CCAACATATCAGTAACAACA+GGG - chr8_1:56376443-56376462 None:intergenic 35.0%
TCCAACATATCAGTAACAAC+AGG - chr8_1:56376444-56376463 None:intergenic 35.0%
GCATCATTTGGAAAATGTTC+AGG + chr8_1:56376500-56376519 Msa1202710:intron 35.0%
CCAAGTTTAGATTCTTAAGG+CGG + chr8_1:56376721-56376740 Msa1202710:intron 35.0%
!! GTTTTAATATGGGCAAGCTA+TGG - chr8_1:56376948-56376967 None:intergenic 35.0%
! ATGGATTGAGAATGTGAAGA+CGG - chr8_1:56377254-56377273 None:intergenic 35.0%
TTCTCAATCCATCTTCTTTG+CGG + chr8_1:56377262-56377281 Msa1202710:CDS 35.0%
! AGTTTATGAGAGCATAGATC+TGG + chr8_1:56377526-56377545 Msa1202710:intron 35.0%
TTCTACAGATCTTTGACAAC+AGG + chr8_1:56377819-56377838 Msa1202710:intron 35.0%
CAGGAAATTGAGTGAAAACA+AGG + chr8_1:56377838-56377857 Msa1202710:intron 35.0%
GGAAATTGAGTGAAAACAAG+GGG + chr8_1:56377840-56377859 Msa1202710:intron 35.0%
TCATCTAGAAGAATCAACTC+AGG + chr8_1:56378007-56378026 Msa1202710:intron 35.0%
CATCTAGAAGAATCAACTCA+GGG + chr8_1:56378008-56378027 Msa1202710:intron 35.0%
TATGTCTTCTCTCTACTTCA+TGG + chr8_1:56378054-56378073 Msa1202710:intron 35.0%
ACACAAAAAAGCAGAGAGTA+AGG - chr8_1:56378318-56378337 None:intergenic 35.0%
GGTAGTAACTAAGACTATGA+TGG - chr8_1:56378369-56378388 None:intergenic 35.0%
TAGTTACTACCTCATCCATT+AGG + chr8_1:56378378-56378397 Msa1202710:intron 35.0%
TGTAAACATGATGCACCTAA+TGG - chr8_1:56378396-56378415 None:intergenic 35.0%
GTAACAAAGTTCTTGTGAAG+AGG - chr8_1:56378454-56378473 None:intergenic 35.0%
TGCATAATATATGCAAGGTC+CGG + chr8_1:56378750-56378769 Msa1202710:intron 35.0%
!!! TATTTTTTTGGTAGTGGCTG+GGG - chr8_1:56378784-56378803 None:intergenic 35.0%
!! TTTGTTTTCAGTCATACCTG+CGG + chr8_1:56378937-56378956 Msa1202710:intron 35.0%
CTTTCTCTATCTTGTGGTAT+TGG + chr8_1:56379018-56379037 Msa1202710:CDS 35.0%
!! CTATCTTGTGGTATTGGTTA+TGG + chr8_1:56379024-56379043 Msa1202710:CDS 35.0%
!!! GGTCAGAATCGTTGTTATTT+TGG + chr8_1:56379085-56379104 Msa1202710:CDS 35.0%
! TTTTACATGTGGTTCGCAAT+TGG + chr8_1:56379135-56379154 Msa1202710:CDS 35.0%
GAAAAGAGGAAGTGATATGT+TGG - chr8_1:56379357-56379376 None:intergenic 35.0%
AGAACAACATTGCTGAAAAG+AGG - chr8_1:56379371-56379390 None:intergenic 35.0%
CTCACTGCATGTGTATTTAT+AGG + chr8_1:56379482-56379501 Msa1202710:three_prime_UTR 35.0%
GTGTATTTATAGGCACCAAT+TGG + chr8_1:56379492-56379511 Msa1202710:three_prime_UTR 35.0%
AACATGGGGAAAGAATGAAT+GGG - chr8_1:56379582-56379601 None:intergenic 35.0%
AAACATGGGGAAAGAATGAA+TGG - chr8_1:56379583-56379602 None:intergenic 35.0%
CCAAAAATTACAGCAGCCAA+AGG - chr8_1:56373027-56373046 None:intergenic 40.0%
! CCTTTGGCTGCTGTAATTTT+TGG + chr8_1:56373024-56373043 Msa1202710:intron 40.0%
! GGTTTACTCTTTGTACTGGT+AGG - chr8_1:56373306-56373325 None:intergenic 40.0%
TTATCTACGTTACCAGCAGT+TGG - chr8_1:56373341-56373360 None:intergenic 40.0%
TTCACACAATCTTACCAGTC+AGG - chr8_1:56373364-56373383 None:intergenic 40.0%
ACCAGACTCGTACTAATTGT+TGG + chr8_1:56373394-56373413 Msa1202710:intron 40.0%
TCCAACAATTAGTACGAGTC+TGG - chr8_1:56373398-56373417 None:intergenic 40.0%
ATGTTATGTATGCAGCTAGC+TGG - chr8_1:56373602-56373621 None:intergenic 40.0%
TGTGAAGCTAACAAGCAGAT+AGG + chr8_1:56373825-56373844 Msa1202710:five_prime_UTR 40.0%
CAATCAGTACACTACGACAA+AGG - chr8_1:56373926-56373945 None:intergenic 40.0%
! CTTTGTCGTAGTGTACTGAT+TGG + chr8_1:56373924-56373943 Msa1202710:five_prime_UTR 40.0%
ACCCTCTATGCATTCTAACA+AGG + chr8_1:56374044-56374063 Msa1202710:five_prime_UTR 40.0%
CCCTTGTTAGAATGCATAGA+GGG - chr8_1:56374048-56374067 None:intergenic 40.0%
CCCTCTATGCATTCTAACAA+GGG + chr8_1:56374045-56374064 Msa1202710:five_prime_UTR 40.0%
ACCCTTGTTAGAATGCATAG+AGG - chr8_1:56374049-56374068 None:intergenic 40.0%
! AAAACACAGTGGTTAGCTGT+AGG - chr8_1:56374231-56374250 None:intergenic 40.0%
! CAATTCAAGCGTTGTTGTCT+TGG + chr8_1:56374534-56374553 Msa1202710:five_prime_UTR 40.0%
! AAGTGTGGTTTTCGTGTCTT+TGG - chr8_1:56374603-56374622 None:intergenic 40.0%
CAGCATAAAAGGGGTTACAA+AGG - chr8_1:56374763-56374782 None:intergenic 40.0%
ATAACTCCTCTTGGGAACTT+AGG + chr8_1:56374912-56374931 Msa1202710:intron 40.0%
! TATGCTGCTTCGACAAGATT+GGG - chr8_1:56375012-56375031 None:intergenic 40.0%
! AAAGACAGTGGTTAGCTGTA+GGG - chr8_1:56375511-56375530 None:intergenic 40.0%
! AAAAGACAGTGGTTAGCTGT+AGG - chr8_1:56375512-56375531 None:intergenic 40.0%
!! AGATGGATTATAGCAAAGCG+TGG - chr8_1:56375599-56375618 None:intergenic 40.0%
GCTTCAAGATCATTCACTTG+TGG + chr8_1:56375691-56375710 Msa1202710:CDS 40.0%
! GGTTTGTTCCTTTCAATCTC+TGG + chr8_1:56375713-56375732 Msa1202710:CDS 40.0%
! CTTTTCACCCAGAGATTGAA+AGG - chr8_1:56375724-56375743 None:intergenic 40.0%
! TGAGCCAAAGTTTTTGTTCC+AGG + chr8_1:56375846-56375865 Msa1202710:CDS 40.0%
ACGTCCTGGAACAAAAACTT+TGG - chr8_1:56375853-56375872 None:intergenic 40.0%
! AAAGTTTTTGTTCCAGGACG+TGG + chr8_1:56375852-56375871 Msa1202710:CDS 40.0%
GGAATCAACTCTTAATCGAC+TGG + chr8_1:56375873-56375892 Msa1202710:CDS 40.0%
TCAACTCTTAATCGACTGGT+CGG + chr8_1:56375877-56375896 Msa1202710:intron 40.0%
GTGGTAATTTAGGAAGGAAG+TGG - chr8_1:56375907-56375926 None:intergenic 40.0%
CATGGAGTGGTAATTTAGGA+AGG - chr8_1:56375913-56375932 None:intergenic 40.0%
ATTACCACTCCATGTTAGCT+TGG + chr8_1:56375919-56375938 Msa1202710:intron 40.0%
CTGAATCTCTGGATTCTGAA+TGG - chr8_1:56376063-56376082 None:intergenic 40.0%
CACTACCATAAAGTCCAAAC+TGG + chr8_1:56376197-56376216 Msa1202710:intron 40.0%
CTTTGGTTGTTCAACCAGTT+TGG - chr8_1:56376214-56376233 None:intergenic 40.0%
TCGGGAAATAGCAACCTTAT+CGG - chr8_1:56376257-56376276 None:intergenic 40.0%
TTGTATGATAGGATAGGCTC+GGG - chr8_1:56376275-56376294 None:intergenic 40.0%
!! AGTGCTTTGGATTTTGGAAG+TGG + chr8_1:56376311-56376330 Msa1202710:intron 40.0%
GTAACAACAGGGAACTCAAT+AGG - chr8_1:56376432-56376451 None:intergenic 40.0%
CCCTGTTGTTACTGATATGT+TGG + chr8_1:56376440-56376459 Msa1202710:intron 40.0%
TTTGGAAAATGTTCAGGGTG+TGG + chr8_1:56376506-56376525 Msa1202710:intron 40.0%
! ACCTACCTCATTTTCCTTCT+TGG + chr8_1:56376534-56376553 Msa1202710:intron 40.0%
TCCAAGAAGGAAAATGAGGT+AGG - chr8_1:56376538-56376557 None:intergenic 40.0%
TTGCTCCAAGAAGGAAAATG+AGG - chr8_1:56376542-56376561 None:intergenic 40.0%
CCGCCTTAAGAATCTAAACT+TGG - chr8_1:56376724-56376743 None:intergenic 40.0%
AGTATTTGAGTGCCAACCTT+AGG + chr8_1:56376982-56377001 Msa1202710:intron 40.0%
GTATTTGAGTGCCAACCTTA+GGG + chr8_1:56376983-56377002 Msa1202710:intron 40.0%
AAACATGACCGCAAAGAAGA+TGG - chr8_1:56377273-56377292 None:intergenic 40.0%
ACTTCTGAGCTTTCAGAATG+AGG - chr8_1:56377509-56377528 None:intergenic 40.0%
TCATGGAAATGCAGATGTGT+TGG + chr8_1:56378071-56378090 Msa1202710:intron 40.0%
! TGTTTCTTTGGTGATCATGC+AGG + chr8_1:56378150-56378169 Msa1202710:intron 40.0%
!! AGTTGTTTGGCTTTGGCATT+TGG + chr8_1:56378213-56378232 Msa1202710:CDS 40.0%
AACCACTTGAGCGATATCTT+GGG - chr8_1:56378617-56378636 None:intergenic 40.0%
GCATAATATATGCAAGGTCC+GGG + chr8_1:56378751-56378770 Msa1202710:intron 40.0%
CATAATATATGCAAGGTCCG+GGG + chr8_1:56378752-56378771 Msa1202710:intron 40.0%
TTCGCTTAGTATGGTTCAAG+TGG + chr8_1:56378820-56378839 Msa1202710:intron 40.0%
CTTAGTATGGTTCAAGTGGT+AGG + chr8_1:56378824-56378843 Msa1202710:intron 40.0%
! TTGTTTTCAGTCATACCTGC+GGG + chr8_1:56378938-56378957 Msa1202710:intron 40.0%
GGTCAACTTTCTCTATCTTG+TGG + chr8_1:56379012-56379031 Msa1202710:CDS 40.0%
ATAGCGCATAGCAGTTGTTA+AGG - chr8_1:56379327-56379346 None:intergenic 40.0%
AGGAAGTGATATGTTGGAGT+GGG - chr8_1:56379351-56379370 None:intergenic 40.0%
AATGTTGTTCTATCCTGAGC+TGG + chr8_1:56379380-56379399 Msa1202710:three_prime_UTR 40.0%
AATACACATGCAGTGAGCAA+GGG - chr8_1:56379479-56379498 None:intergenic 40.0%
AAATACACATGCAGTGAGCA+AGG - chr8_1:56379480-56379499 None:intergenic 40.0%
GGTAACGTAGATAACCTGAC+TGG + chr8_1:56373347-56373366 Msa1202710:intron 45.0%
! TTCAATCAGGTGGACTCTCT+TGG + chr8_1:56373704-56373723 Msa1202710:five_prime_UTR 45.0%
! TCAATCAGGTGGACTCTCTT+GGG + chr8_1:56373705-56373724 Msa1202710:five_prime_UTR 45.0%
!! TCGTAGTGTACTGATTGGGT+TGG + chr8_1:56373929-56373948 Msa1202710:five_prime_UTR 45.0%
!! AGTGTACTGATTGGGTTGGT+TGG + chr8_1:56373933-56373952 Msa1202710:five_prime_UTR 45.0%
TATCTTGTGAGACACGAACC+AGG + chr8_1:56374485-56374504 Msa1202710:five_prime_UTR 45.0%
! GGCATTTTCACACCAAAACC+TGG - chr8_1:56374506-56374525 None:intergenic 45.0%
!! AACGCTTGAATTGATGACGG+TGG - chr8_1:56374527-56374546 None:intergenic 45.0%
CTGTTCGAAAGAGCTAGGAT+AGG - chr8_1:56374686-56374705 None:intergenic 45.0%
! CTATCCTAGCTCTTTCGAAC+AGG + chr8_1:56374684-56374703 Msa1202710:five_prime_UTR 45.0%
GTTACCTGTTCGAAAGAGCT+AGG - chr8_1:56372951-56372970 None:intergenic 45.0%
ATTACGCCTAAGTTCCCAAG+AGG - chr8_1:56374921-56374940 None:intergenic 45.0%
! CTATGCTGCTTCGACAAGAT+TGG - chr8_1:56375013-56375032 None:intergenic 45.0%
TGTGAAGCTAGCAAGCAGAT+AGG + chr8_1:56375039-56375058 Msa1202710:intron 45.0%
CATAGAGGGTCTAAGTGAAG+AGG - chr8_1:56375301-56375320 None:intergenic 45.0%
GTAAGAACTGCTCAGAGAGA+TGG + chr8_1:56375760-56375779 Msa1202710:CDS 45.0%
CAGAGAGATGGAAAGAGTGA+TGG + chr8_1:56375772-56375791 Msa1202710:CDS 45.0%
! TAAGAGTTGATTCCACGTCC+TGG - chr8_1:56375867-56375886 None:intergenic 45.0%
CAGTAGAAGCCAAGCTAACA+TGG - chr8_1:56375931-56375950 None:intergenic 45.0%
AACAGGGAACTCAATAGGAG+TGG - chr8_1:56376427-56376446 None:intergenic 45.0%
GGAAGCAAACAGAACGATCA+TGG - chr8_1:56376608-56376627 None:intergenic 45.0%
CTTCACTAAACGACAGCACT+TGG - chr8_1:56376629-56376648 None:intergenic 45.0%
GACAAAGCAGAGTTGTCTTG+TGG - chr8_1:56376673-56376692 None:intergenic 45.0%
AATACAATGGCAGCTCCCTA+AGG - chr8_1:56377001-56377020 None:intergenic 45.0%
! GCTGTTGTTTACAGAGCAAG+TGG + chr8_1:56377069-56377088 Msa1202710:intron 45.0%
TGGATAGTAAGTGCCCTCTT+TGG + chr8_1:56377089-56377108 Msa1202710:CDS 45.0%
! CAGAAGCCTTATGGTTTGCA+GGG + chr8_1:56377138-56377157 Msa1202710:CDS 45.0%
! AGAAGCCTTATGGTTTGCAG+GGG + chr8_1:56377139-56377158 Msa1202710:CDS 45.0%
CAAGCGCTTATCACAAAGCA+GGG - chr8_1:56377365-56377384 None:intergenic 45.0%
ACAAGCGCTTATCACAAAGC+AGG - chr8_1:56377366-56377385 None:intergenic 45.0%
! GAGAGCATAGATCTGGTGAA+AGG + chr8_1:56377533-56377552 Msa1202710:intron 45.0%
CACCATTACCAGCAGTTGTT+TGG + chr8_1:56378200-56378219 Msa1202710:CDS 45.0%
AGCCAAACAACTGCTGGTAA+TGG - chr8_1:56378205-56378224 None:intergenic 45.0%
! TACCAGCAGTTGTTTGGCTT+TGG + chr8_1:56378206-56378225 Msa1202710:CDS 45.0%
! CATGATGCACCTAATGGATG+AGG - chr8_1:56378390-56378409 None:intergenic 45.0%
ACCACTTGAGCGATATCTTG+GGG - chr8_1:56378616-56378635 None:intergenic 45.0%
CAACCACTTGAGCGATATCT+TGG - chr8_1:56378618-56378637 None:intergenic 45.0%
ATATCGCTCAAGTGGTTGAG+TGG + chr8_1:56378620-56378639 Msa1202710:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG + chr8_1:56378723-56378742 Msa1202710:intron 45.0%
AGTATGGTTCAAGTGGTAGG+TGG + chr8_1:56378827-56378846 Msa1202710:intron 45.0%
ACTTCATACAGTGAGCCAAG+TGG + chr8_1:56378971-56378990 Msa1202710:CDS 45.0%
AACGATTCTGACCCACAAAG+AGG - chr8_1:56379078-56379097 None:intergenic 45.0%
GAGGAAGTGATATGTTGGAG+TGG - chr8_1:56379352-56379371 None:intergenic 45.0%
CTCTCTCTTTATTCCAGCTC+AGG - chr8_1:56379396-56379415 None:intergenic 45.0%
CCTGTTCGAAAGAGCTAGCT+AGG - chr8_1:56372947-56372966 None:intergenic 50.0%
! CCTAGCTAGCTCTTTCGAAC+AGG + chr8_1:56372944-56372963 Msa1202710:intron 50.0%
TAGTACGAGTCTGGTGCATG+TGG - chr8_1:56373389-56373408 None:intergenic 50.0%
!! ATGCAGCTAGCTGGTTTGAG+TGG - chr8_1:56373593-56373612 None:intergenic 50.0%
GTGGACTCTCTTGGGAACTT+GGG + chr8_1:56373713-56373732 Msa1202710:five_prime_UTR 50.0%
TGGACTCTCTTGGGAACTTG+GGG + chr8_1:56373714-56373733 Msa1202710:five_prime_UTR 50.0%
! GTGAGACACGAACCAGGTTT+TGG + chr8_1:56374491-56374510 Msa1202710:five_prime_UTR 50.0%
ATAGCAAAGCGTGGCTGTTG+CGG - chr8_1:56375590-56375609 None:intergenic 50.0%
! TCTCTGGGTGAAAAGTGCGA+TGG + chr8_1:56375729-56375748 Msa1202710:CDS 50.0%
! TGGGTGAAAAGTGCGATGGA+TGG + chr8_1:56375733-56375752 Msa1202710:CDS 50.0%
GAAGCCAAGCTAACATGGAG+TGG - chr8_1:56375926-56375945 None:intergenic 50.0%
GGCATGATGCAGAAGCCTTA+TGG + chr8_1:56377129-56377148 Msa1202710:CDS 50.0%
! GCAGAAGCCTTATGGTTTGC+AGG + chr8_1:56377137-56377156 Msa1202710:CDS 50.0%
! GAAGCCTTATGGTTTGCAGG+GGG + chr8_1:56377140-56377159 Msa1202710:CDS 50.0%
! AAGCCTTATGGTTTGCAGGG+GGG + chr8_1:56377141-56377160 Msa1202710:CDS 50.0%
GGGTCAGATTTCACGGTTGA+AGG - chr8_1:56377224-56377243 None:intergenic 50.0%
TCAACCGTGAAATCTGACCC+TGG + chr8_1:56377224-56377243 Msa1202710:CDS 50.0%
CAACCGTGAAATCTGACCCT+GGG + chr8_1:56377225-56377244 Msa1202710:CDS 50.0%
CATCCCAGGGTCAGATTTCA+CGG - chr8_1:56377231-56377250 None:intergenic 50.0%
AATGTGAAGACGGCATCCCA+GGG - chr8_1:56377244-56377263 None:intergenic 50.0%
TGCCAAAGCCAAACAACTGC+TGG - chr8_1:56378211-56378230 None:intergenic 50.0%
! GAGAGTAAGGTATCACGCCA+AGG - chr8_1:56378305-56378324 None:intergenic 50.0%
TCCCCAAGATATCGCTCAAG+TGG + chr8_1:56378612-56378631 Msa1202710:intron 50.0%
GGTTGAGTGGTGACATCCAA+AGG + chr8_1:56378633-56378652 Msa1202710:intron 50.0%
! GAAGTTTTTGTGACACCCGC+AGG - chr8_1:56378956-56378975 None:intergenic 50.0%
ACAGTGAGCCAAGTGGTTGT+TGG + chr8_1:56378978-56378997 Msa1202710:CDS 50.0%
CAACAGCTCCAACAACCACT+TGG - chr8_1:56378989-56379008 None:intergenic 50.0%
AGTGGTTGTTGGAGCTGTTG+TGG + chr8_1:56378989-56379008 Msa1202710:CDS 50.0%
GTGGTTGTTGGAGCTGTTGT+GGG + chr8_1:56378990-56379009 Msa1202710:CDS 50.0%
TGGTTGTTGGAGCTGTTGTG+GGG + chr8_1:56378991-56379010 Msa1202710:CDS 50.0%
GGGTCTGCAGTACTTTGCTT+AGG + chr8_1:56379107-56379126 Msa1202710:CDS 50.0%
! GGTGGACTCTCTTGGGAACT+TGG + chr8_1:56373712-56373731 Msa1202710:five_prime_UTR 55.0%
GGACTCTCTTGGGAACTTGG+GGG + chr8_1:56373715-56373734 Msa1202710:five_prime_UTR 55.0%
CAATGGCAGCTCCCTAAGGT+TGG - chr8_1:56376997-56377016 None:intergenic 55.0%
AGACCCCCCTGCAAACCATA+AGG - chr8_1:56377147-56377166 None:intergenic 55.0%
GAATGTGAAGACGGCATCCC+AGG - chr8_1:56377245-56377264 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG - chr8_1:56378721-56378740 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + chr8_1:56378718-56378737 Msa1202710:intron 55.0%
GGTTCAAGTGGTAGGTGGTG+TGG + chr8_1:56378832-56378851 Msa1202710:intron 55.0%
TCAAGTGGTAGGTGGTGTGG+CGG + chr8_1:56378835-56378854 Msa1202710:intron 55.0%
AGTGGCTGGGGTTTGAACCC+CGG - chr8_1:56378772-56378791 None:intergenic 60.0%
GCGTGGCTGTTGCGGTCATG+TGG - chr8_1:56375582-56375601 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 56372882 56379625 56372882 ID=Msa1202710;Name=Msa1202710
chr8_1 mRNA 56372882 56379625 56372882 ID=Msa1202710-mRNA-1;Parent=Msa1202710;Name=Msa1202710-mRNA-1;_AED=0.21;_eAED=0.21;_QI=1134|1|1|1|0.6|0.66|6|453|283
chr8_1 exon 56372882 56372944 56372882 ID=Msa1202710-mRNA-1:exon:18308;Parent=Msa1202710-mRNA-1
chr8_1 exon 56373656 56374705 56373656 ID=Msa1202710-mRNA-1:exon:18309;Parent=Msa1202710-mRNA-1
chr8_1 exon 56375544 56375894 56375544 ID=Msa1202710-mRNA-1:exon:18310;Parent=Msa1202710-mRNA-1
chr8_1 exon 56377083 56377305 56377083 ID=Msa1202710-mRNA-1:exon:18311;Parent=Msa1202710-mRNA-1
chr8_1 exon 56378172 56378245 56378172 ID=Msa1202710-mRNA-1:exon:18312;Parent=Msa1202710-mRNA-1
chr8_1 exon 56378948 56379625 56378948 ID=Msa1202710-mRNA-1:exon:18313;Parent=Msa1202710-mRNA-1
chr8_1 five_prime_UTR 56372882 56372944 56372882 ID=Msa1202710-mRNA-1:five_prime_utr;Parent=Msa1202710-mRNA-1
chr8_1 five_prime_UTR 56373656 56374705 56373656 ID=Msa1202710-mRNA-1:five_prime_utr;Parent=Msa1202710-mRNA-1
chr8_1 five_prime_UTR 56375544 56375564 56375544 ID=Msa1202710-mRNA-1:five_prime_utr;Parent=Msa1202710-mRNA-1
chr8_1 CDS 56375565 56375894 56375565 ID=Msa1202710-mRNA-1:cds;Parent=Msa1202710-mRNA-1
chr8_1 CDS 56377083 56377305 56377083 ID=Msa1202710-mRNA-1:cds;Parent=Msa1202710-mRNA-1
chr8_1 CDS 56378172 56378245 56378172 ID=Msa1202710-mRNA-1:cds;Parent=Msa1202710-mRNA-1
chr8_1 CDS 56378948 56379172 56378948 ID=Msa1202710-mRNA-1:cds;Parent=Msa1202710-mRNA-1
chr8_1 three_prime_UTR 56379173 56379625 56379173 ID=Msa1202710-mRNA-1:three_prime_utr;Parent=Msa1202710-mRNA-1
Gene Sequence

>Msa1202710

ATGCTGCAATCTTTCCACATGACCGCAACAGCCACGCTTTGCTATAATCCATCTAACAATTTTTTGAGGACAAATCAGCCTAAACAAAGATACTTGAAAAACAATTCATTTTCTCCTAGTTTATCTGCTTCAAGATCATTCACTTGTGGGTTTGTTCCTTTCAATCTCTGGGTGAAAAGTGCGATGGATGGATTTGTAAGAACTGCTCAGAGAGATGGAAAGAGTGATGGACATATTGAAGTGCTTGAACAAGAAGCTTTCGTTGATAGGTCATCTGAGTCTGAGCCAAAGTTTTTGTTCCAGGACGTGGAATCAACTCTTAATCGACTGAGCAAGTGGATAGTAAGTGCCCTCTTTGGTGTTTTTGTTATTTGGAGGCATGATGCAGAAGCCTTATGGTTTGCAGGGGGGTCTGTTTTAAATGCAATGCTTTCTGTTTTACTCAAACAAATACTTAATCAGGAACGACCTTCAACCGTGAAATCTGACCCTGGGATGCCGTCTTCACATTCTCAATCCATCTTCTTTGCGGTCATGTTTACTATCTTGTCAAGTGTTGAATTGTTAAGTATCAATGCACTCACCATTACCAGCAGTTGTTTGGCTTTGGCATTTGGTTCTTATTTTTCATACCTGCGGGTGTCACAAAAACTTCATACAGTGAGCCAAGTGGTTGTTGGAGCTGTTGTGGGGTCAACTTTCTCTATCTTGTGGTATTGGTTATGGAATGCATTTGTGCTAGATGCTTTTTTATCCTCTTTGTGGGTCAGAATCGTTGTTATTTTGGGGTCTGCAGTACTTTGCTTAGGTTTTCTTTTACATGTGGTTCGCAATTGGCTTAAAGACGAATGA

Protein sequence

>Msa1202710

MLQSFHMTATATLCYNPSNNFLRTNQPKQRYLKNNSFSPSLSASRSFTCGFVPFNLWVKSAMDGFVRTAQRDGKSDGHIEVLEQEAFVDRSSESEPKFLFQDVESTLNRLSKWIVSALFGVFVIWRHDAEALWFAGGSVLNAMLSVLLKQILNQERPSTVKSDPGMPSSHSQSIFFAVMFTILSSVELLSINALTITSSCLALAFGSYFSYLRVSQKLHTVSQVVVGAVVGSTFSILWYWLWNAFVLDAFLSSLWVRIVVILGSAVLCLGFLLHVVRNWLKDE*