AlfalfaGEDB | Msa0736320

M. sativa cultivar zhongmu-4 / Msa0736320

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0736320	AES99104.2	96.667	60	2	0	8	67	1	60	3.11e-34	120

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0736320	G7KFR7	96.667	60	2	0	8	67	1	60	1.49e-34	120

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0011170	Msa0736320	0.806921	6.505368e-50	-8.615850e-47
Msa0115270	Msa0736320	0.810179	1.311072e-50	-8.615850e-47
Msa0119850	Msa0736320	0.804835	1.785346e-49	-8.615850e-47
Msa0152170	Msa0736320	0.809419	1.910223e-50	-8.615850e-47
Msa0344830	Msa0736320	0.813342	2.686847e-51	-8.615850e-47
Msa0380040	Msa0736320	0.822479	2.317774e-53	-8.615850e-47
Msa0399340	Msa0736320	0.810076	1.379629e-50	-8.615850e-47
Msa0429290	Msa0736320	0.802906	4.492494e-49	-8.615850e-47
Msa0442200	Msa0736320	0.825569	4.365172e-54	-8.615850e-47
Msa0467900	Msa0736320	-0.821893	3.169413e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0736320	MtrunA17_Chr5g0433571	96.667	60	2	0	8	67	1	60	2.86e-38	120

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 18 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGGCCATGGACATTA+AGG	0.344635	5_1:-52453735	None:intergenic
AAACATGACACTTATTTAAG+AGG	0.442906	5_1:-52453811	None:intergenic
AACATGACACTTATTTAAGA+GGG	0.527972	5_1:-52453810	None:intergenic
ACCTTCTGAGGAACAATTGA+AGG	0.461328	5_1:+52453677	Msa0736320:CDS
ACGTGGTGGAAAATAGGCCA+TGG	0.603725	5_1:-52453744	None:intergenic
ATGAACTAGTGGAGATAGCT+AGG	0.521615	5_1:-52453771	None:intergenic
ATGACACTTATTTAAGAGGG+AGG	0.627766	5_1:-52453807	None:intergenic
CAATGAAACACCACCTTCTG+AGG	0.567138	5_1:+52453665	Msa0736320:CDS
CTCACTCATACTATGCTTCG+TGG	0.556047	5_1:-52453366	None:intergenic
GATAGCTAGGAATGACGTGG+TGG	0.711922	5_1:-52453758	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATCTATGACTATGAACTAG+TGG	-	chr5_1:52453785-52453804	None:intergenic	30.0%
AAAATAGGCCATGGACATTA+AGG	-	chr5_1:52453738-52453757	None:intergenic	35.0%
ATGACACTTATTTAAGAGGG+AGG	-	chr5_1:52453810-52453829	None:intergenic	35.0%
TTCAATTGTTCCTCAGAAGG+TGG	-	chr5_1:52453678-52453697	None:intergenic	40.0%
ATGAACTAGTGGAGATAGCT+AGG	-	chr5_1:52453774-52453793	None:intergenic	40.0%
CTCACTCATACTATGCTTCG+TGG	-	chr5_1:52453369-52453388	None:intergenic	45.0%
CAATGAAACACCACCTTCTG+AGG	+	chr5_1:52453665-52453684	Msa0736320:CDS	45.0%
GCCTTCAATTGTTCCTCAGA+AGG	-	chr5_1:52453681-52453700	None:intergenic	45.0%
GTCGTTCACCTTAATGTCCA+TGG	+	chr5_1:52453727-52453746	Msa0736320:exon	45.0%
GATAGCTAGGAATGACGTGG+TGG	-	chr5_1:52453761-52453780	None:intergenic	50.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	52453345	52453921	52453345	ID=Msa0736320;Name=Msa0736320
chr5_1	mRNA	52453345	52453921	52453345	ID=Msa0736320-mRNA-1;Parent=Msa0736320;Name=Msa0736320-mRNA-1;_AED=0.03;_eAED=0.03;_QI=62\|1\|1\|1\|1\|1\|2\|181\|67
chr5_1	exon	52453345	52453483	52453345	ID=Msa0736320-mRNA-1:exon:14794;Parent=Msa0736320-mRNA-1
chr5_1	exon	52453614	52453921	52453614	ID=Msa0736320-mRNA-1:exon:14795;Parent=Msa0736320-mRNA-1
chr5_1	five_prime_UTR	52453345	52453406	52453345	ID=Msa0736320-mRNA-1:five_prime_utr;Parent=Msa0736320-mRNA-1
chr5_1	CDS	52453407	52453483	52453407	ID=Msa0736320-mRNA-1:cds;Parent=Msa0736320-mRNA-1
chr5_1	CDS	52453614	52453740	52453614	ID=Msa0736320-mRNA-1:cds;Parent=Msa0736320-mRNA-1
chr5_1	three_prime_UTR	52453741	52453921	52453741	ID=Msa0736320-mRNA-1:three_prime_utr;Parent=Msa0736320-mRNA-1

Gene Sequence	>Msa0736320 ATGAACAACACCAATAAAAAGATGAAGATCTTTGGCAAAACCGTGTTTCCAAGACAAATTATACTTTTTGCATCAGGGCTTTTGTTCTTGGCATCAACAACTTATGATGTTCATAGATCAATCAAGAACAATGAAACACCACCTTCTGAGGAACAATTGAAGGCTCTTGAAGAGTACATCAAATCGGTGCGTCGTTCACCTTAA
Protein sequence	>Msa0736320 MNNTNKKMKIFGKTVFPRQIILFASGLLFLASTTYDVHRSIKNNETPPSEEQLKALEEYIKSVRRSP*