AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0301460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0301460 MtrunA17_Chr2g0326841 99.043 209 2 0 1 209 1 209 7.83e-156 429
Msa0301460 MtrunA17_Chr7g0264181 87.317 205 26 0 3 207 4 208 1.62e-133 373
Msa0301460 MtrunA17_Chr1g0181131 85.990 207 29 0 1 207 1 207 2.34e-133 373
Msa0301460 MtrunA17_Chr4g0028871 89.899 198 20 0 12 209 12 209 1.00e-132 371
Msa0301460 MtrunA17_Chr3g0142491 76.329 207 49 0 1 207 3 209 1.25e-119 338
Msa0301460 MtrunA17_Chr1g0177391 76.410 195 46 0 10 204 6 200 3.25e-114 324
Msa0301460 MtrunA17_Chr1g0151201 69.000 200 60 1 11 208 7 206 4.14e-102 294
Msa0301460 MtrunA17_Chr1g0156401 66.964 112 16 1 40 130 1 112 7.38e-45 145
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0301460 AT2G28305.1 88.945 199 22 0 10 208 5 203 1.37e-132 371
Msa0301460 AT2G37210.1 85.644 202 29 0 7 208 8 209 1.59e-130 366
Msa0301460 AT3G53450.1 84.236 203 32 0 7 209 8 210 1.59e-127 358
Msa0301460 AT2G37210.2 76.106 226 30 1 7 208 8 233 1.39e-124 352
Msa0301460 AT2G28305.3 90.659 182 17 0 10 191 5 186 6.26e-122 343
Msa0301460 AT5G06300.1 79.000 200 42 0 5 204 1 200 7.27e-118 334
Msa0301460 AT5G03270.1 82.796 186 32 0 10 195 16 201 2.70e-113 322
Msa0301460 AT2G35990.1 71.144 201 58 0 5 205 1 201 1.46e-110 315
Msa0301460 AT5G03270.2 82.873 181 31 0 10 190 16 196 4.77e-109 311
Msa0301460 AT4G35190.1 69.458 203 62 0 5 207 1 203 2.47e-105 303
Msa0301460 AT5G11950.1 68.342 199 63 0 10 208 7 205 2.24e-101 292
Msa0301460 AT5G11950.2 68.342 199 63 0 10 208 7 205 2.24e-101 292
Msa0301460 AT5G11950.3 68.342 199 63 0 10 208 7 205 2.24e-101 292
Msa0301460 AT4G35190.2 70.103 194 56 1 5 198 1 192 1.16e-100 290
Msa0301460 AT2G28305.2 92.593 135 10 0 10 144 5 139 6.22e-89 258
Msa0301460 AT2G35990.3 71.812 149 42 0 57 205 1 149 5.61e-80 236
Msa0301460 AT2G35990.2 71.812 149 42 0 57 205 1 149 5.61e-80 236
Msa0301460 AT5G11950.4 68.421 152 48 0 57 208 1 152 3.92e-74 221
Msa0301460 AT5G26140.2 53.061 147 47 1 84 208 6 152 2.46e-45 148
Msa0301460 AT5G26140.1 51.880 133 42 1 98 208 1 133 6.09e-38 129
Msa0301460 AT5G26140.3 56.863 102 44 0 107 208 17 118 2.06e-34 119

Find 65 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAATATTGATCTAGTTTA+TGG 0.105402 2_3:-57538008 Msa0301460:CDS
CTCTCTTGGCATTAGTGTTT+TGG 0.116726 2_3:+57537736 None:intergenic
TGTTTCTACTTTAATTACTA+TGG 0.284874 2_3:+57538591 None:intergenic
GATGGTGGTCGACATGTAAT+TGG 0.286287 2_3:-57537939 Msa0301460:CDS
AATGATGCTGACTCGTCTAT+AGG 0.325760 2_3:+57538514 None:intergenic
GTTAATGTAAACTATCGATT+TGG 0.336123 2_3:-57532264 Msa0301460:three_prime_UTR
CCAACCTGGTAAGGCTATAA+AGG 0.339119 2_3:+57536616 None:intergenic
TATACTATGCTGCAGCTTAC+TGG 0.352094 2_3:-57536713 Msa0301460:intron
ATGATGCTGACTCGTCTATA+GGG 0.353587 2_3:+57538515 None:intergenic
TATTGAACTTGGAAAAGAAT+TGG 0.373481 2_3:-57538278 Msa0301460:intron
AGGAGGCAGCATTGGTTTGA+TGG 0.380464 2_3:-57537985 Msa0301460:CDS
TGGTAACAAAACTAGCTATA+AGG 0.381980 2_3:-57538308 Msa0301460:CDS
CGGTTATATGGTATATATAA+AGG 0.383302 2_3:+57538447 None:intergenic
CTGCATAACTTTACCTCTCT+TGG 0.385694 2_3:+57537722 None:intergenic
GTGGTATAAGCGCGGTTATA+TGG 0.390897 2_3:+57538435 None:intergenic
GGAGGCAGCATTGGTTTGAT+GGG 0.391809 2_3:-57537984 Msa0301460:CDS
GCATCAAAGGAAAGCTGAAA+TGG 0.434148 2_3:-57536654 Msa0301460:CDS
TATTTGCATGAAGGTGGGTA+TGG 0.435005 2_3:-57533102 Msa0301460:intron
GAGTTGCCTCCAAGCTAAGC+TGG 0.437628 2_3:-57532474 Msa0301460:CDS
TTTGTCGATGAAAGTCAAAA+AGG 0.444110 2_3:+57532879 None:intergenic
AAATCTTTACCGGTTTATCA+TGG 0.448590 2_3:+57533031 None:intergenic
GTGGGATTGCTGAATGTTGA+TGG 0.455471 2_3:-57532913 Msa0301460:CDS
CCTTTGATATGAGTGGTTGA+TGG 0.456369 2_3:+57538411 None:intergenic
AAGGATGCTGCTATTGAACT+TGG 0.459571 2_3:-57538289 Msa0301460:CDS
ATTTCTCAAGCTGTTTATGA+TGG 0.472010 2_3:-57537957 Msa0301460:CDS
TCTCTCACCTTTGATATGAG+TGG 0.472849 2_3:+57538404 None:intergenic
GGTAGAAGATCGCAATTTCA+TGG 0.477830 2_3:-57532320 Msa0301460:three_prime_UTR
TTTGAATGAATGGTGAAAGA+GGG 0.481457 2_3:-57538616 None:intergenic
TTGGTGCAGACACAATTATA+TGG 0.490804 2_3:+57532821 None:intergenic
TTGTTTGTACCAACCTGGTA+AGG 0.495823 2_3:+57536607 None:intergenic
GTTTATGGAGGAGGCAGCAT+TGG 0.498113 2_3:-57537993 Msa0301460:CDS
CACAATTATATGGCGAGCTG+TGG 0.500721 2_3:+57532831 None:intergenic
ACTTGGCATCCATGATAAAC+CGG 0.501203 2_3:-57533040 Msa0301460:intron
GATGCCTTTATAGCCTTACC+AGG 0.517415 2_3:-57536620 Msa0301460:intron
ACAATTATATGGCGAGCTGT+GGG 0.517777 2_3:+57532832 None:intergenic
TCTCAAGCTGTTTATGATGG+TGG 0.519302 2_3:-57537954 Msa0301460:CDS
ATTGATCTAGTTTATGGAGG+AGG 0.523752 2_3:-57538002 Msa0301460:CDS
GACAACTCAAGGAACTACTA+TGG 0.525382 2_3:-57532341 Msa0301460:three_prime_UTR
AGGCAACTCTTTCATGCTGT+GGG 0.528340 2_3:+57532488 None:intergenic
TCAAAGGTGAGAGAGAAGAA+TGG 0.531372 2_3:-57538395 Msa0301460:exon
GTGATAACATGGGCTCAACT+TGG 0.532726 2_3:-57533057 Msa0301460:CDS
CAGTAGCTGACATGCATCAA+AGG 0.536960 2_3:-57536667 Msa0301460:CDS
GAGGCAGCATTGGTTTGATG+GGG 0.537940 2_3:-57537983 Msa0301460:CDS
ATCGACAAAGCTGTGGAGGA+AGG 0.545903 2_3:-57532865 Msa0301460:CDS
GAGGCAACTCTTTCATGCTG+TGG 0.549574 2_3:+57532487 None:intergenic
ATTTGCATGAAGGTGGGTAT+GGG 0.550161 2_3:-57533101 Msa0301460:intron
GACTTTCATCGACAAAGCTG+TGG 0.562460 2_3:-57532872 Msa0301460:CDS
AGCTCCTTGAGGTGATAACA+TGG 0.564557 2_3:-57533068 Msa0301460:CDS
CAGCTTACTGGTGAAACAGT+AGG 0.570843 2_3:-57536701 Msa0301460:CDS
ATGGTGGTCGACATGTAATT+GGG 0.573816 2_3:-57537938 Msa0301460:intron
GATATGAGTGGTTGATGGTG+TGG 0.576120 2_3:+57538416 None:intergenic
AATATTGATCTAGTTTATGG+AGG 0.578824 2_3:-57538005 Msa0301460:CDS
TTGAATGAATGGTGAAAGAG+GGG 0.580105 2_3:-57538615 None:intergenic
AGTTGCCTCCAAGCTAAGCT+GGG 0.587565 2_3:-57532473 Msa0301460:CDS
CCATCAACCACTCATATCAA+AGG 0.611945 2_3:-57538411 Msa0301460:five_prime_UTR
GAGCCCATGTTATCACCTCA+AGG 0.614099 2_3:+57533064 None:intergenic
TCAAAATGTGAGACAACTCA+AGG 0.622102 2_3:-57532352 Msa0301460:three_prime_UTR
TTTCATCGACAAAGCTGTGG+AGG 0.624003 2_3:-57532869 Msa0301460:CDS
CAAAACACTAATGCCAAGAG+AGG 0.626831 2_3:-57537735 Msa0301460:intron
GACACTTGAGGAGCTCCTTG+AGG 0.631827 2_3:-57533079 Msa0301460:CDS
GACTCGTCTATAGGGAACCA+AGG 0.651655 2_3:+57538523 None:intergenic
CAATTATATGGCGAGCTGTG+GGG 0.655172 2_3:+57532833 None:intergenic
AGGTGGGTATGGGACACTTG+AGG 0.655697 2_3:-57533091 Msa0301460:CDS
GCTCCTTGAGGTGATAACAT+GGG 0.684486 2_3:-57533067 Msa0301460:CDS
TTGATGGTGTGGTATAAGCG+CGG 0.761838 2_3:+57538427 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTTTATTTAAATAA+TGG - chr2_3:57535672-57535691 Msa0301460:intron 0.0%
!!! TTGTATTTTGATATATAAAA+AGG - chr2_3:57532800-57532819 Msa0301460:CDS 10.0%
!! ATGATAAAGAATATAAAAAA+GGG + chr2_3:57533485-57533504 None:intergenic 10.0%
!!! AAATTAAAGTTTACATTTTA+TGG + chr2_3:57534474-57534493 None:intergenic 10.0%
!!! ATATTGTAATTTTACAATTT+TGG - chr2_3:57535697-57535716 Msa0301460:intron 10.0%
!! TTCATGATGATAATAAAATA+AGG + chr2_3:57532617-57532636 None:intergenic 15.0%
!! GATGATAAAGAATATAAAAA+AGG + chr2_3:57533486-57533505 None:intergenic 15.0%
!!! GTGTCATTTTAATTATTTTT+TGG + chr2_3:57533740-57533759 None:intergenic 15.0%
!! CTTCTAATATTTGATTAAAT+GGG - chr2_3:57534498-57534517 Msa0301460:intron 15.0%
!! AAAATGAAAAGAGAAAAAAA+AGG + chr2_3:57534840-57534859 None:intergenic 15.0%
!!! TTTTTTTCTCTTTTCATTTT+AGG - chr2_3:57534840-57534859 Msa0301460:intron 15.0%
!! TTGATGAAATTCAATAAATA+AGG - chr2_3:57535471-57535490 Msa0301460:intron 15.0%
!! TGATGAAATTCAATAAATAA+GGG - chr2_3:57535472-57535491 Msa0301460:intron 15.0%
!!! AATAAATAAGGGTATAATAA+TGG - chr2_3:57535483-57535502 Msa0301460:intron 15.0%
!!! ATTTGTTTTAGATTAAAAGA+TGG + chr2_3:57536196-57536215 None:intergenic 15.0%
!! ATTTGTCATGTAATAATTAA+TGG + chr2_3:57536498-57536517 None:intergenic 15.0%
!! AAACATCAAAAATAAAGATT+AGG - chr2_3:57536551-57536570 Msa0301460:intron 15.0%
!!! AAAGATTATTGAATATTTTG+AGG - chr2_3:57537066-57537085 Msa0301460:intron 15.0%
!!! GATGATTGTATATTTTTTTA+AGG + chr2_3:57537600-57537619 None:intergenic 15.0%
!!! AAAAAATTGGTTTCAAAATT+GGG + chr2_3:57537677-57537696 None:intergenic 15.0%
!!! ATAAAAGTTTTTGTTTTTGA+AGG - chr2_3:57537901-57537920 Msa0301460:intron 15.0%
!!! TGTTTCTACTTTAATTACTA+TGG + chr2_3:57532248-57532267 None:intergenic 20.0%
!! ATATCATATCATAGGAATAT+AGG + chr2_3:57532759-57532778 None:intergenic 20.0%
!! TAAACATCATATCATATCAT+AGG + chr2_3:57532767-57532786 None:intergenic 20.0%
!!! AGAAATATTGATCTAGTTTA+TGG - chr2_3:57532828-57532847 Msa0301460:CDS 20.0%
!! ATATTGAGATAACAAAAGTA+TGG + chr2_3:57533242-57533261 None:intergenic 20.0%
!! AAAAATACAAATGTGAAACT+TGG + chr2_3:57533265-57533284 None:intergenic 20.0%
!!! AGTTTGTAAATTTGAAGTAT+AGG + chr2_3:57533355-57533374 None:intergenic 20.0%
!! TATATTCTTTATCATCATTG+AGG - chr2_3:57533490-57533509 Msa0301460:intron 20.0%
!! TTAAATGATTAAACATTGCA+AGG - chr2_3:57533637-57533656 Msa0301460:intron 20.0%
!! TTGAATAAAATTATCCTTAG+TGG + chr2_3:57533805-57533824 None:intergenic 20.0%
!! AAATATCGACAGTTAATATA+TGG + chr2_3:57533834-57533853 None:intergenic 20.0%
!! CCATTTAATCAAATATTAGA+AGG + chr2_3:57534500-57534519 None:intergenic 20.0%
!! CCTTCTAATATTTGATTAAA+TGG - chr2_3:57534497-57534516 Msa0301460:intron 20.0%
!! TTATGTGTAATTCATCTTAA+AGG + chr2_3:57534999-57535018 None:intergenic 20.0%
!!! ATAGCATCAATTTTAATGTA+AGG + chr2_3:57535240-57535259 None:intergenic 20.0%
!! AAAAATAATAAATGCTGCAT+TGG - chr2_3:57535507-57535526 Msa0301460:intron 20.0%
!!! AAAGAAAGTATCATTTTAGT+GGG + chr2_3:57535779-57535798 None:intergenic 20.0%
!! AATAAAGGAAAGAAAGTTTA+TGG + chr2_3:57535842-57535861 None:intergenic 20.0%
!! AATAAGGAAAGAAAGAATAA+AGG + chr2_3:57535857-57535876 None:intergenic 20.0%
!! ATAAAAGTTGACAAATTCAA+TGG - chr2_3:57535899-57535918 Msa0301460:intron 20.0%
!!! TTGTTGGTTAAAATCTATAT+AGG - chr2_3:57536024-57536043 Msa0301460:intron 20.0%
!! TTAATTGAAAAGTGATAAGA+TGG - chr2_3:57536583-57536602 Msa0301460:intron 20.0%
!! ATCAAAATACCTATTATTGA+AGG + chr2_3:57536864-57536883 None:intergenic 20.0%
!! ATTACGATAAAGTAAAACAA+AGG + chr2_3:57536902-57536921 None:intergenic 20.0%
!! TACTTTAAGTCTTAAGATAA+AGG - chr2_3:57537339-57537358 Msa0301460:intron 20.0%
!!! GAAAAAATTGGTTTCAAAAT+TGG + chr2_3:57537678-57537697 None:intergenic 20.0%
!! GTACTAGAAATAGAAAAAAT+TGG + chr2_3:57537690-57537709 None:intergenic 20.0%
!!! GCAAATTTTATCTCATAAAA+GGG + chr2_3:57537877-57537896 None:intergenic 20.0%
!!! AGCAAATTTTATCTCATAAA+AGG + chr2_3:57537878-57537897 None:intergenic 20.0%
!!! AGAATTAGTTTTCATTCTTT+TGG - chr2_3:57538303-57538322 Msa0301460:CDS 20.0%
! CGGTTATATGGTATATATAA+AGG + chr2_3:57532392-57532411 None:intergenic 25.0%
! TATTGAACTTGGAAAAGAAT+TGG - chr2_3:57532558-57532577 Msa0301460:intron 25.0%
! TCAAAAGAATTTGACGTATT+TGG - chr2_3:57532729-57532748 Msa0301460:intron 25.0%
!! AATATTGATCTAGTTTATGG+AGG - chr2_3:57532831-57532850 Msa0301460:CDS 25.0%
! TTCTTCTTCTTAAACCTATT+TGG - chr2_3:57532939-57532958 Msa0301460:intron 25.0%
! CTTATCTATCAATATACATC+TGG - chr2_3:57533373-57533392 Msa0301460:intron 25.0%
! CCAAGCTTAAATTTATGATA+GGG + chr2_3:57533561-57533580 None:intergenic 25.0%
! ATTAGGCGTCATTTAAAAAT+TGG + chr2_3:57533692-57533711 None:intergenic 25.0%
!! ATGTAATGATGAGTTTTTGA+AGG + chr2_3:57533984-57534003 None:intergenic 25.0%
! AGTGATATGAGTATTTAGTA+GGG + chr2_3:57534041-57534060 None:intergenic 25.0%
! CTATTGTTTCAGTGATAATT+TGG - chr2_3:57534098-57534117 Msa0301460:intron 25.0%
! ATGATTCACAAGTTTAATAG+TGG + chr2_3:57534582-57534601 None:intergenic 25.0%
!! AGTAGTGATTCACTAATTTT+TGG + chr2_3:57534606-57534625 None:intergenic 25.0%
! GAGATACTAGTAGATATTAT+TGG - chr2_3:57534642-57534661 Msa0301460:intron 25.0%
! ATATTATTGGTCATATGTGT+TGG - chr2_3:57534655-57534674 Msa0301460:intron 25.0%
!! TATGTGTTGGTATATTTAGA+TGG - chr2_3:57534668-57534687 Msa0301460:intron 25.0%
!!! TTGGAAAGCACTTAAATTTT+TGG - chr2_3:57534949-57534968 Msa0301460:intron 25.0%
! ATCTTATCATTAAGTCTGTT+TGG - chr2_3:57535047-57535066 Msa0301460:intron 25.0%
!! GAAAGAGTATAGAAAGTAAA+TGG - chr2_3:57535124-57535143 Msa0301460:intron 25.0%
! GAGATGATTATTTAAGTGTT+TGG - chr2_3:57535152-57535171 Msa0301460:intron 25.0%
!!! ATTGATTGTGTTGATTTCAA+TGG - chr2_3:57535388-57535407 Msa0301460:intron 25.0%
! CCACTAACTACAATTAATAA+GGG + chr2_3:57535440-57535459 None:intergenic 25.0%
! TCCACTAACTACAATTAATA+AGG + chr2_3:57535441-57535460 None:intergenic 25.0%
!!! TTTTTTCTCACCTGTAATAT+TGG + chr2_3:57535638-57535657 None:intergenic 25.0%
!!! GAAAGAAAGTATCATTTTAG+TGG + chr2_3:57535780-57535799 None:intergenic 25.0%
! TTTCTTTCCTTATTGTTCTA+TGG - chr2_3:57535863-57535882 Msa0301460:intron 25.0%
!! GTCAACTTTTATGCAATATT+TGG + chr2_3:57535891-57535910 None:intergenic 25.0%
!! TTTTAACCAACAAAAAGAGT+AGG + chr2_3:57536017-57536036 None:intergenic 25.0%
! ATGTGATTCCTATGTAAATT+TGG + chr2_3:57536054-57536073 None:intergenic 25.0%
!! GTAAGTTCAAAAATTCCTTT+TGG + chr2_3:57536444-57536463 None:intergenic 25.0%
!! ATTATATTTCAAGTAGCGTT+TGG + chr2_3:57536805-57536824 None:intergenic 25.0%
! AGAAATTCTAATATGGTCAA+GGG - chr2_3:57536971-57536990 Msa0301460:intron 25.0%
! GTCACAAAATCAATAATGTT+TGG + chr2_3:57537113-57537132 None:intergenic 25.0%
!!! TTTTTTCCATTTTGCTTGAA+GGG - chr2_3:57537372-57537391 Msa0301460:intron 25.0%
!! TTATTAGTTTCGACAATATG+TGG + chr2_3:57537401-57537420 None:intergenic 25.0%
!!! AATTTTTTTTCCTGATGGTA+TGG + chr2_3:57537429-57537448 None:intergenic 25.0%
!!! AAGACAATTTTTTTTCCTGA+TGG + chr2_3:57537434-57537453 None:intergenic 25.0%
! TGAACTAGAGTTAAAAAAGT+TGG - chr2_3:57537504-57537523 Msa0301460:intron 25.0%
!! TTTCTTCTGAGTTTGAATTT+TGG + chr2_3:57537534-57537553 None:intergenic 25.0%
!!! ATTTTTTTAAGGACCAATGT+TGG + chr2_3:57537589-57537608 None:intergenic 25.0%
! ATACAATCATCTAACAAAAC+TGG - chr2_3:57537609-57537628 Msa0301460:intron 25.0%
! TACAATCATCTAACAAAACT+GGG - chr2_3:57537610-57537629 Msa0301460:intron 25.0%
!!! TAGTACCATGTTTTCTAAAA+GGG - chr2_3:57537704-57537723 Msa0301460:intron 25.0%
!!! TATAACCCTTTTAGAAAACA+TGG + chr2_3:57537712-57537731 None:intergenic 25.0%
! GGTTATATATATTTGCATGA+AGG - chr2_3:57537725-57537744 Msa0301460:intron 25.0%
! TATATATATTTGCATGAAGG+TGG - chr2_3:57537728-57537747 Msa0301460:intron 25.0%
! ATATATATTTGCATGAAGGT+GGG - chr2_3:57537729-57537748 Msa0301460:intron 25.0%
! TGTAGAATGAAAATCTTTAC+CGG + chr2_3:57537818-57537837 None:intergenic 25.0%
!!! AAAGTTTTTGTTTTTGAAGG+TGG - chr2_3:57537904-57537923 Msa0301460:intron 25.0%
!!! AAGTTTTTGTTTTTGAAGGT+GGG - chr2_3:57537905-57537924 Msa0301460:intron 25.0%
!!! ATATTTTTGACAAGCTCTTT+TGG + chr2_3:57538043-57538062 None:intergenic 25.0%
! AAAAGAGCTTGTCAAAAATA+TGG - chr2_3:57538042-57538061 Msa0301460:intron 25.0%
!! TCTTAGATTTCACAATTTTG+AGG + chr2_3:57538410-57538429 None:intergenic 25.0%
!! TGAAATCTAAGATGATTAGA+TGG - chr2_3:57538418-57538437 Msa0301460:five_prime_UTR 25.0%
!! GTTAATGTAAACTATCGATT+TGG - chr2_3:57538572-57538591 Msa0301460:five_prime_UTR 25.0%
! ACATTGTATCAAGTTTTCCT+TGG - chr2_3:57532296-57532315 Msa0301460:three_prime_UTR 30.0%
!! TCAGCATCATTTTAATGATG+TGG - chr2_3:57532334-57532353 Msa0301460:three_prime_UTR 30.0%
! AAGAGAATTTGTGTGTTTTG+TGG - chr2_3:57532496-57532515 Msa0301460:CDS 30.0%
!!! TATAGCTAGTTTTGTTACCA+GGG + chr2_3:57532528-57532547 None:intergenic 30.0%
!!! TTATAGCTAGTTTTGTTACC+AGG + chr2_3:57532529-57532548 None:intergenic 30.0%
TGGTAACAAAACTAGCTATA+AGG - chr2_3:57532528-57532547 Msa0301460:intron 30.0%
ATTTCTCAAGCTGTTTATGA+TGG - chr2_3:57532879-57532898 Msa0301460:CDS 30.0%
CGATAAATTTGACGATATCA+CGG + chr2_3:57533000-57533019 None:intergenic 30.0%
! AGAATCTAAAGGGTGTAATA+TGG + chr2_3:57533450-57533469 None:intergenic 30.0%
AATGCCAATGAGAATCTAAA+GGG + chr2_3:57533460-57533479 None:intergenic 30.0%
TAATGCCAATGAGAATCTAA+AGG + chr2_3:57533461-57533480 None:intergenic 30.0%
CCCTATCATAAATTTAAGCT+TGG - chr2_3:57533558-57533577 Msa0301460:intron 30.0%
GCCAAGCTTAAATTTATGAT+AGG + chr2_3:57533562-57533581 None:intergenic 30.0%
CTTAGTGGAGTTTATTCATA+GGG + chr2_3:57533790-57533809 None:intergenic 30.0%
AAAATGCATTTGTATCAGCA+GGG + chr2_3:57534011-57534030 None:intergenic 30.0%
AAAAATGCATTTGTATCAGC+AGG + chr2_3:57534012-57534031 None:intergenic 30.0%
! TGCTGATACAAATGCATTTT+TGG - chr2_3:57534011-57534030 Msa0301460:intron 30.0%
GAGTGATATGAGTATTTAGT+AGG + chr2_3:57534042-57534061 None:intergenic 30.0%
AAATATTGGAGCTAGAAAGA+AGG + chr2_3:57534255-57534274 None:intergenic 30.0%
! TAGCTCCAATATTTTTCTCA+TGG - chr2_3:57534261-57534280 Msa0301460:intron 30.0%
! TCCAATATTTTTCTCATGGA+TGG - chr2_3:57534265-57534284 Msa0301460:intron 30.0%
ACCATCCATGAGAAAAATAT+TGG + chr2_3:57534269-57534288 None:intergenic 30.0%
TGTGGAATGTAAATTCCAAT+AGG - chr2_3:57534288-57534307 Msa0301460:intron 30.0%
TTCCAATAGGTGATTCATTA+AGG - chr2_3:57534301-57534320 Msa0301460:intron 30.0%
CGAATTTGGATTTATGAAGT+TGG - chr2_3:57534387-57534406 Msa0301460:intron 30.0%
ATTTGGATTTATGAAGTTGG+AGG - chr2_3:57534390-57534409 Msa0301460:intron 30.0%
GGGTATCTCTATAAATGTAA+GGG - chr2_3:57534548-57534567 Msa0301460:intron 30.0%
AAAGTGGGGAAAAAATTGAT+TGG + chr2_3:57534926-57534945 None:intergenic 30.0%
!!! ATTTTTTCCCCACTTTTTGT+TGG - chr2_3:57534930-57534949 Msa0301460:intron 30.0%
!!! ATTTTTGGAATTTGCAAGAG+TGG - chr2_3:57534964-57534983 Msa0301460:intron 30.0%
GGAAGAATAAAGAAAGTGAA+AGG - chr2_3:57535068-57535087 Msa0301460:intron 30.0%
AAACGACACTAATTTAGAGA+CGG + chr2_3:57535339-57535358 None:intergenic 30.0%
!! CTCTAAATTAGTGTCGTTTA+AGG - chr2_3:57535340-57535359 Msa0301460:intron 30.0%
CCCTTATTAATTGTAGTTAG+TGG - chr2_3:57535437-57535456 Msa0301460:intron 30.0%
AAGAGACTATTATTGTGAGA+CGG - chr2_3:57535573-57535592 Msa0301460:intron 30.0%
ATGCCATAAACCAATATTAC+AGG - chr2_3:57535625-57535644 Msa0301460:intron 30.0%
!! TCACCTGTAATATTGGTTTA+TGG + chr2_3:57535631-57535650 None:intergenic 30.0%
! TTTGGAACCATAGAACAATA+AGG + chr2_3:57535873-57535892 None:intergenic 30.0%
AAGAGTAGGTTGTAAAGTTT+AGG + chr2_3:57536003-57536022 None:intergenic 30.0%
! TTACAACCTACTCTTTTTGT+TGG - chr2_3:57536008-57536027 Msa0301460:intron 30.0%
TGATTCCTATGTAAATTTGG+TGG + chr2_3:57536051-57536070 None:intergenic 30.0%
TAGATTAAAAGATGGTTGAC+TGG + chr2_3:57536188-57536207 None:intergenic 30.0%
AGCTTATTAATCATCTGAGT+TGG + chr2_3:57536237-57536256 None:intergenic 30.0%
! AAGATCTTTTCCCTGAAAAA+CGG - chr2_3:57536357-57536376 Msa0301460:intron 30.0%
CTTTCAAAGCCTTCAATAAT+AGG - chr2_3:57536852-57536871 Msa0301460:intron 30.0%
TGCAAGGAGAAATTCTAATA+TGG - chr2_3:57536964-57536983 Msa0301460:intron 30.0%
GAGAAATTCTAATATGGTCA+AGG - chr2_3:57536970-57536989 Msa0301460:intron 30.0%
!!! CATTATTGATTTTGTGACCA+TGG - chr2_3:57537115-57537134 Msa0301460:intron 30.0%
!! CTGTATCTTTTTGTTTGTGT+GGG + chr2_3:57537168-57537187 None:intergenic 30.0%
CACACAAACAAAAAGATACA+GGG - chr2_3:57537167-57537186 Msa0301460:intron 30.0%
ACACAAACAAAAAGATACAG+GGG - chr2_3:57537168-57537187 Msa0301460:intron 30.0%
AAAAACAAATCCGTACTTCA+TGG - chr2_3:57537246-57537265 Msa0301460:intron 30.0%
!!! CTTTTTTCCATTTTGCTTGA+AGG - chr2_3:57537371-57537390 Msa0301460:intron 30.0%
AATAACAATTCCATACCATC+AGG - chr2_3:57537416-57537435 Msa0301460:intron 30.0%
ACTAGAGTTAAAAAAGTTGG+AGG - chr2_3:57537507-57537526 Msa0301460:intron 30.0%
!! AATGTTGGTGATTAGTTGTT+AGG + chr2_3:57537574-57537593 None:intergenic 30.0%
TAACAACTAATCACCAACAT+TGG - chr2_3:57537573-57537592 Msa0301460:intron 30.0%
ACAATCATCTAACAAAACTG+GGG - chr2_3:57537611-57537630 Msa0301460:intron 30.0%
! CTAGTACCATGTTTTCTAAA+AGG - chr2_3:57537703-57537722 Msa0301460:intron 30.0%
!! AAATCTTTACCGGTTTATCA+TGG + chr2_3:57537808-57537827 None:intergenic 30.0%
TTTGTCGATGAAAGTCAAAA+AGG + chr2_3:57537960-57537979 None:intergenic 30.0%
! GTTGGATAGAAGTATATAGA+TGG + chr2_3:57538076-57538095 None:intergenic 30.0%
TAGTCTATTCTCAGTTCAAT+CGG + chr2_3:57538112-57538131 None:intergenic 30.0%
GAACTGAGAATAGACTAATT+AGG - chr2_3:57538115-57538134 Msa0301460:intron 30.0%
AAGATTGAACCGCATTAAAT+CGG - chr2_3:57538189-57538208 Msa0301460:intron 30.0%
TTGAAGAACCAGTGAAAATT+CGG + chr2_3:57538274-57538293 None:intergenic 30.0%
!!! TCTTTTGGTTTCATTCATGT+AGG - chr2_3:57538318-57538337 Msa0301460:CDS 30.0%
! TTAAGAGCACACAAAAATCT+CGG + chr2_3:57538544-57538563 None:intergenic 30.0%
! ATTGATCTAGTTTATGGAGG+AGG - chr2_3:57532834-57532853 Msa0301460:CDS 35.0%
GGGTTTCTGTAAATCCAAAT+AGG + chr2_3:57532956-57532975 None:intergenic 35.0%
TAAATTTGACGATATCACGG+TGG + chr2_3:57532997-57533016 None:intergenic 35.0%
! TCTCTTGGCATTAGTGTTTT+GGG + chr2_3:57533102-57533121 None:intergenic 35.0%
TGTGCGATTATTCATTCAAG+TGG - chr2_3:57533286-57533305 Msa0301460:intron 35.0%
GTGCGATTATTCATTCAAGT+GGG - chr2_3:57533287-57533306 Msa0301460:intron 35.0%
TCAATATACATCTGGCAATC+TGG - chr2_3:57533381-57533400 Msa0301460:intron 35.0%
CAATATACATCTGGCAATCT+GGG - chr2_3:57533382-57533401 Msa0301460:intron 35.0%
AATATACATCTGGCAATCTG+GGG - chr2_3:57533383-57533402 Msa0301460:intron 35.0%
GAAAGACAAAATGGTTCAGA+AGG + chr2_3:57533417-57533436 None:intergenic 35.0%
ACATGGAGAGAAAGACAAAA+TGG + chr2_3:57533426-57533445 None:intergenic 35.0%
! AAAGGGTGTAATATGGAACA+TGG + chr2_3:57533443-57533462 None:intergenic 35.0%
TACACCCTTTAGATTCTCAT+TGG - chr2_3:57533453-57533472 Msa0301460:intron 35.0%
TTAAATGACGCCTAATTGCA+AGG - chr2_3:57533696-57533715 Msa0301460:intron 35.0%
CCTTAGTGGAGTTTATTCAT+AGG + chr2_3:57533791-57533810 None:intergenic 35.0%
CCTATGAATAAACTCCACTA+AGG - chr2_3:57533788-57533807 Msa0301460:intron 35.0%
!! GATGAGTTTTTGAAGGTAGT+GGG + chr2_3:57533977-57533996 None:intergenic 35.0%
!! TGATGAGTTTTTGAAGGTAG+TGG + chr2_3:57533978-57533997 None:intergenic 35.0%
! TATTTTTCTCATGGATGGTG+TGG - chr2_3:57534270-57534289 Msa0301460:intron 35.0%
TGCCTTAATGAATCACCTAT+TGG + chr2_3:57534306-57534325 None:intergenic 35.0%
TCATTAAGGCACATGTCAAA+AGG - chr2_3:57534315-57534334 Msa0301460:intron 35.0%
CAAATTCGTCTATAGTCATG+CGG + chr2_3:57534375-57534394 None:intergenic 35.0%
! GGGGTATCTCTATAAATGTA+AGG - chr2_3:57534547-57534566 Msa0301460:intron 35.0%
GGAAAAAATTGATTGGCAGT+TGG + chr2_3:57534919-57534938 None:intergenic 35.0%
AGTGCTTTCCAACAAAAAGT+GGG + chr2_3:57534941-57534960 None:intergenic 35.0%
AAGTGCTTTCCAACAAAAAG+TGG + chr2_3:57534942-57534961 None:intergenic 35.0%
GTGAAAGGAAAGATAGTATG+AGG - chr2_3:57535083-57535102 Msa0301460:intron 35.0%
GTATGAGGAAAGATTGTTGA+AGG - chr2_3:57535098-57535117 Msa0301460:intron 35.0%
GTGTTTGGTATGAAAGAAAG+TGG - chr2_3:57535167-57535186 Msa0301460:intron 35.0%
AAGAAAGTCGAAGGAAAGAT+AGG - chr2_3:57535191-57535210 Msa0301460:intron 35.0%
GATGGAAAGTTTCAAAACGT+GGG - chr2_3:57535752-57535771 Msa0301460:intron 35.0%
ATGGAAAGTTTCAAAACGTG+GGG - chr2_3:57535753-57535772 Msa0301460:intron 35.0%
!! GTTTGGTTGTTTTGTAAGTG+TGG + chr2_3:57535802-57535821 None:intergenic 35.0%
CTTACAAAACAACCAAACCA+TGG - chr2_3:57535804-57535823 Msa0301460:intron 35.0%
AAAAATGTGCTTCCATGGTT+TGG + chr2_3:57535819-57535838 None:intergenic 35.0%
TATGGAAAAATGTGCTTCCA+TGG + chr2_3:57535824-57535843 None:intergenic 35.0%
GACAAATTCAATGGAAGAGA+TGG - chr2_3:57535908-57535927 Msa0301460:intron 35.0%
CAATATCAATCGCTACTCAT+TGG + chr2_3:57535946-57535965 None:intergenic 35.0%
TAGGTCCACCAAATTTACAT+AGG - chr2_3:57536043-57536062 Msa0301460:intron 35.0%
!! AGGTCTAATTCCGTTTTTCA+GGG + chr2_3:57536370-57536389 None:intergenic 35.0%
! AATTCCTTTTGGACATCGTA+TGG + chr2_3:57536433-57536452 None:intergenic 35.0%
! TAATTAATGGACAACCGAAG+TGG + chr2_3:57536485-57536504 None:intergenic 35.0%
TGCAAGATCGATGTAAGAAT+GGG + chr2_3:57536948-57536967 None:intergenic 35.0%
TTGCAAGATCGATGTAAGAA+TGG + chr2_3:57536949-57536968 None:intergenic 35.0%
ATTCTTACATCGATCTTGCA+AGG - chr2_3:57536948-57536967 Msa0301460:intron 35.0%
! GTGACCAAACACTATTTTCT+TGG + chr2_3:57536998-57537017 None:intergenic 35.0%
ACCATGGAAGAATATCTATC+CGG - chr2_3:57537131-57537150 Msa0301460:intron 35.0%
!! CCTGTATCTTTTTGTTTGTG+TGG + chr2_3:57537169-57537188 None:intergenic 35.0%
CCACACAAACAAAAAGATAC+AGG - chr2_3:57537166-57537185 Msa0301460:intron 35.0%
AGATAGATGACCATGAAGTA+CGG + chr2_3:57537259-57537278 None:intergenic 35.0%
TTGGTGCAGACACAATTATA+TGG + chr2_3:57538018-57538037 None:intergenic 35.0%
AGAGCTTGTCAAAAATATGG+AGG - chr2_3:57538045-57538064 Msa0301460:intron 35.0%
ATCGGTTAAATCGAAAACGT+TGG + chr2_3:57538094-57538113 None:intergenic 35.0%
CTGAGAATAGACTAATTAGG+TGG - chr2_3:57538118-57538137 Msa0301460:intron 35.0%
GAATAGACTAATTAGGTGGT+TGG - chr2_3:57538122-57538141 Msa0301460:intron 35.0%
!! TTAGGTGGTTGGTTTAATCT+CGG - chr2_3:57538133-57538152 Msa0301460:intron 35.0%
TGAAGAACCAGTGAAAATTC+GGG + chr2_3:57538273-57538292 None:intergenic 35.0%
GATGATTAGATGGTAATCGA+TGG - chr2_3:57538428-57538447 Msa0301460:five_prime_UTR 35.0%
TCAAAATGTGAGACAACTCA+AGG - chr2_3:57538484-57538503 Msa0301460:five_prime_UTR 35.0%
!! ATGATGCTGACTCGTCTATA+GGG + chr2_3:57532324-57532343 None:intergenic 40.0%
!! AATGATGCTGACTCGTCTAT+AGG + chr2_3:57532325-57532344 None:intergenic 40.0%
CCTTTGATATGAGTGGTTGA+TGG + chr2_3:57532428-57532447 None:intergenic 40.0%
CCATCAACCACTCATATCAA+AGG - chr2_3:57532425-57532444 Msa0301460:three_prime_UTR 40.0%
TCTCTCACCTTTGATATGAG+TGG + chr2_3:57532435-57532454 None:intergenic 40.0%
TCAAAGGTGAGAGAGAAGAA+TGG - chr2_3:57532441-57532460 Msa0301460:exon 40.0%
AAGGATGCTGCTATTGAACT+TGG - chr2_3:57532547-57532566 Msa0301460:intron 40.0%
TCTCAAGCTGTTTATGATGG+TGG - chr2_3:57532882-57532901 Msa0301460:CDS 40.0%
ATGGTGGTCGACATGTAATT+GGG - chr2_3:57532898-57532917 Msa0301460:CDS 40.0%
GAAGAAGAAGATGAAGCTCT+TGG + chr2_3:57532928-57532947 None:intergenic 40.0%
! CTCTCTTGGCATTAGTGTTT+TGG + chr2_3:57533103-57533122 None:intergenic 40.0%
CAAAACACTAATGCCAAGAG+AGG - chr2_3:57533101-57533120 Msa0301460:intron 40.0%
CTGCATAACTTTACCTCTCT+TGG + chr2_3:57533117-57533136 None:intergenic 40.0%
GAGGTAAAGTTATGCAGCTT+TGG - chr2_3:57533120-57533139 Msa0301460:intron 40.0%
TTCATTCAAGTGGGAACTAG+TGG - chr2_3:57533296-57533315 Msa0301460:intron 40.0%
TGTGTTTCGTCCTTGCAATT+AGG + chr2_3:57533709-57533728 None:intergenic 40.0%
TATACTATGCTGCAGCTTAC+TGG - chr2_3:57534123-57534142 Msa0301460:intron 40.0%
GCATCAAAGGAAAGCTGAAA+TGG - chr2_3:57534182-57534201 Msa0301460:intron 40.0%
TTGTTTGTACCAACCTGGTA+AGG + chr2_3:57534232-57534251 None:intergenic 40.0%
CGCATGACTATAGACGAATT+TGG - chr2_3:57534373-57534392 Msa0301460:intron 40.0%
TTGTCACGATTGCATGAATG+TGG + chr2_3:57534419-57534438 None:intergenic 40.0%
TCATGCAATCGTGACAACAT+CGG - chr2_3:57534422-57534441 Msa0301460:intron 40.0%
ATATTCTAACCGCGTGAACT+AGG - chr2_3:57534526-57534545 Msa0301460:intron 40.0%
TATTCTAACCGCGTGAACTA+GGG - chr2_3:57534527-57534546 Msa0301460:intron 40.0%
GTGCTTTCCAACAAAAAGTG+GGG + chr2_3:57534940-57534959 None:intergenic 40.0%
GAAAGTGGAAAGAAAGTCGA+AGG - chr2_3:57535182-57535201 Msa0301460:intron 40.0%
GACACTAATTTAGAGACGGA+GGG + chr2_3:57535335-57535354 None:intergenic 40.0%
! TGTCGTTTAAGGTTTGTGCA+CGG - chr2_3:57535351-57535370 Msa0301460:intron 40.0%
AGGTTTGTGCACGGTTATTA+AGG - chr2_3:57535360-57535379 Msa0301460:intron 40.0%
AGACTATTATTGTGAGACGG+AGG - chr2_3:57535576-57535595 Msa0301460:intron 40.0%
GACTATTATTGTGAGACGGA+GGG - chr2_3:57535577-57535596 Msa0301460:intron 40.0%
GGATGGAAAGTTTCAAAACG+TGG - chr2_3:57535751-57535770 Msa0301460:intron 40.0%
!! GAGGTCTAATTCCGTTTTTC+AGG + chr2_3:57536371-57536390 None:intergenic 40.0%
AACGGAATTAGACCTCTAAG+TGG - chr2_3:57536375-57536394 Msa0301460:intron 40.0%
ACGGAATTAGACCTCTAAGT+GGG - chr2_3:57536376-57536395 Msa0301460:intron 40.0%
AAGACCATACGATGTCCAAA+AGG - chr2_3:57536426-57536445 Msa0301460:intron 40.0%
ATTACATGAATGCGCCACTT+CGG - chr2_3:57536468-57536487 Msa0301460:intron 40.0%
GGGACCAAGAAAATAGTGTT+TGG - chr2_3:57536991-57537010 Msa0301460:intron 40.0%
AAGAATATCTATCCGGCAAG+TGG - chr2_3:57537138-57537157 Msa0301460:intron 40.0%
CAAAGATAGTCCTCTGATTC+TGG - chr2_3:57537294-57537313 Msa0301460:intron 40.0%
TATTCTCTCACCAGAATCAG+AGG + chr2_3:57537307-57537326 None:intergenic 40.0%
ATCTAACAAAACTGGGGAAG+TGG - chr2_3:57537617-57537636 Msa0301460:intron 40.0%
TATTTGCATGAAGGTGGGTA+TGG - chr2_3:57537734-57537753 Msa0301460:intron 40.0%
ATTTGCATGAAGGTGGGTAT+GGG - chr2_3:57537735-57537754 Msa0301460:intron 40.0%
ACTTGGCATCCATGATAAAC+CGG - chr2_3:57537796-57537815 Msa0301460:intron 40.0%
ACAATTATATGGCGAGCTGT+GGG + chr2_3:57538007-57538026 None:intergenic 40.0%
!! TTGACAAGCTCTTTTGGTGT+TGG + chr2_3:57538037-57538056 None:intergenic 40.0%
! GCGATTCAACCGATTTAATG+CGG + chr2_3:57538201-57538220 None:intergenic 40.0%
GCATTAAATCGGTTGAATCG+CGG - chr2_3:57538200-57538219 Msa0301460:intron 40.0%
! ACCATAACCCGAATTTTCAC+TGG - chr2_3:57538263-57538282 Msa0301460:intron 40.0%
! ACCAGTGAAAATTCGGGTTA+TGG + chr2_3:57538267-57538286 None:intergenic 40.0%
! TTCATTTTCCCAGCTTAGCT+TGG + chr2_3:57538374-57538393 None:intergenic 40.0%
GACAACTCAAGGAACTACTA+TGG - chr2_3:57538495-57538514 Msa0301460:five_prime_UTR 40.0%
GGTAGAAGATCGCAATTTCA+TGG - chr2_3:57538516-57538535 Msa0301460:five_prime_UTR 40.0%
GTGGTATAAGCGCGGTTATA+TGG + chr2_3:57532404-57532423 None:intergenic 45.0%
!! TTGATGGTGTGGTATAAGCG+CGG + chr2_3:57532412-57532431 None:intergenic 45.0%
!! GATATGAGTGGTTGATGGTG+TGG + chr2_3:57532423-57532442 None:intergenic 45.0%
! GATGGTGGTCGACATGTAAT+TGG - chr2_3:57532897-57532916 Msa0301460:CDS 45.0%
GGCACAATGCGATTATGCTA+GGG + chr2_3:57532976-57532995 None:intergenic 45.0%
TGGCACAATGCGATTATGCT+AGG + chr2_3:57532977-57532996 None:intergenic 45.0%
! CATTGCAAGGCTAATTTGCC+AGG - chr2_3:57533650-57533669 Msa0301460:intron 45.0%
! TTGCCAGGATTAGCGATTAC+AGG - chr2_3:57533665-57533684 Msa0301460:intron 45.0%
CAGCTTACTGGTGAAACAGT+AGG - chr2_3:57534135-57534154 Msa0301460:intron 45.0%
CAGTAGCTGACATGCATCAA+AGG - chr2_3:57534169-57534188 Msa0301460:intron 45.0%
! GATGCCTTTATAGCCTTACC+AGG - chr2_3:57534216-57534235 Msa0301460:intron 45.0%
CCAACCTGGTAAGGCTATAA+AGG + chr2_3:57534223-57534242 None:intergenic 45.0%
! CCTTTATAGCCTTACCAGGT+TGG - chr2_3:57534220-57534239 Msa0301460:intron 45.0%
GAAGGTTGTTTGTACCAACC+TGG + chr2_3:57534237-57534256 None:intergenic 45.0%
ATTCTAACCGCGTGAACTAG+GGG - chr2_3:57534528-57534547 Msa0301460:intron 45.0%
CGACACTAATTTAGAGACGG+AGG + chr2_3:57535336-57535355 None:intergenic 45.0%
CAAAGCAGCGAAGAAAGCTA+GGG + chr2_3:57535732-57535751 None:intergenic 45.0%
CAATGGAAGAGATGGTGAAG+AGG - chr2_3:57535916-57535935 Msa0301460:intron 45.0%
CGGAATTAGACCTCTAAGTG+GGG - chr2_3:57536377-57536396 Msa0301460:intron 45.0%
CAATACGATACCCCACTTAG+AGG + chr2_3:57536390-57536409 None:intergenic 45.0%
GCCGGATAGATATTCTTCCA+TGG + chr2_3:57537135-57537154 None:intergenic 45.0%
GAGAAAGCTGCCCTTATCAT+GGG + chr2_3:57537194-57537213 None:intergenic 45.0%
AGAGAAAGCTGCCCTTATCA+TGG + chr2_3:57537195-57537214 None:intergenic 45.0%
TGGAGACCCTTCAAGCAAAA+TGG + chr2_3:57537381-57537400 None:intergenic 45.0%
AGCTCCTTGAGGTGATAACA+TGG - chr2_3:57537768-57537787 Msa0301460:intron 45.0%
GCTCCTTGAGGTGATAACAT+GGG - chr2_3:57537769-57537788 Msa0301460:intron 45.0%
GTGATAACATGGGCTCAACT+TGG - chr2_3:57537779-57537798 Msa0301460:intron 45.0%
GTGGGATTGCTGAATGTTGA+TGG - chr2_3:57537923-57537942 Msa0301460:intron 45.0%
GACTTTCATCGACAAAGCTG+TGG - chr2_3:57537964-57537983 Msa0301460:CDS 45.0%
TTTCATCGACAAAGCTGTGG+AGG - chr2_3:57537967-57537986 Msa0301460:CDS 45.0%
CAATTATATGGCGAGCTGTG+GGG + chr2_3:57538006-57538025 None:intergenic 45.0%
CACAATTATATGGCGAGCTG+TGG + chr2_3:57538008-57538027 None:intergenic 45.0%
AGGCAACTCTTTCATGCTGT+GGG + chr2_3:57538351-57538370 None:intergenic 45.0%
!! ATTTTCCCAGCTTAGCTTGG+AGG + chr2_3:57538371-57538390 None:intergenic 45.0%
!!! TTTTTACTTATATTTTATTA+TGG + chr2_3:57532705-57532724 None:intergenic 5.0%
!! AATTAAATATTAGATTTATA+TGG + chr2_3:57533584-57533603 None:intergenic 5.0%
!!! TATATAATTTTGATATATTT+TGG + chr2_3:57534717-57534736 None:intergenic 5.0%
!! TAAAAAAAACAATAAATAAA+CGG - chr2_3:57535284-57535303 Msa0301460:intron 5.0%
!! TTTAAATAAAAAAAATTCAA+CGG + chr2_3:57535669-57535688 None:intergenic 5.0%
GACTCGTCTATAGGGAACCA+AGG + chr2_3:57532316-57532335 None:intergenic 50.0%
! GTGTTTTGTGGTAGTAGCCC+TGG - chr2_3:57532508-57532527 Msa0301460:intron 50.0%
GTTTATGGAGGAGGCAGCAT+TGG - chr2_3:57532843-57532862 Msa0301460:CDS 50.0%
!! AGGAGGCAGCATTGGTTTGA+TGG - chr2_3:57532851-57532870 Msa0301460:CDS 50.0%
!! GGAGGCAGCATTGGTTTGAT+GGG - chr2_3:57532852-57532871 Msa0301460:CDS 50.0%
!! GAGGCAGCATTGGTTTGATG+GGG - chr2_3:57532853-57532872 Msa0301460:CDS 50.0%
GGTCCTGTAATCGCTAATCC+TGG + chr2_3:57533671-57533690 None:intergenic 50.0%
AGAGATACCCCTAGTTCACG+CGG + chr2_3:57534538-57534557 None:intergenic 50.0%
GGAATTTGCAAGAGTGGTGC+AGG - chr2_3:57534970-57534989 Msa0301460:intron 50.0%
GCGAAGAAAGCTAGGGCATA+GGG + chr2_3:57535725-57535744 None:intergenic 50.0%
AGCGAAGAAAGCTAGGGCAT+AGG + chr2_3:57535726-57535745 None:intergenic 50.0%
CCAAAGCAGCGAAGAAAGCT+AGG + chr2_3:57535733-57535752 None:intergenic 50.0%
! CCTAGCTTTCTTCGCTGCTT+TGG - chr2_3:57535730-57535749 Msa0301460:intron 50.0%
! GCTTTCTTCGCTGCTTTGGA+TGG - chr2_3:57535734-57535753 Msa0301460:intron 50.0%
AGATACAGGGGCCCATGATA+AGG - chr2_3:57537180-57537199 Msa0301460:intron 50.0%
GATACAGGGGCCCATGATAA+GGG - chr2_3:57537181-57537200 Msa0301460:intron 50.0%
GAGCCCATGTTATCACCTCA+AGG + chr2_3:57537775-57537794 None:intergenic 50.0%
ATCGACAAAGCTGTGGAGGA+AGG - chr2_3:57537971-57537990 Msa0301460:CDS 50.0%
GAGGCAACTCTTTCATGCTG+TGG + chr2_3:57538352-57538371 None:intergenic 50.0%
AGTTGCCTCCAAGCTAAGCT+GGG - chr2_3:57538363-57538382 Msa0301460:CDS 50.0%
TGTGTGGGTAAGCCACTTGC+CGG + chr2_3:57537153-57537172 None:intergenic 55.0%
AGGTGGGTATGGGACACTTG+AGG - chr2_3:57537745-57537764 Msa0301460:CDS 55.0%
GACACTTGAGGAGCTCCTTG+AGG - chr2_3:57537757-57537776 Msa0301460:intron 55.0%
GAGTTGCCTCCAAGCTAAGC+TGG - chr2_3:57538362-57538381 Msa0301460:CDS 55.0%
GGCAGTTGGCACGTCACAAG+TGG + chr2_3:57534905-57534924 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 57532234 57538624 57532234 ID=Msa0301460;Name=Msa0301460
chr2_3 mRNA 57532234 57538624 57532234 ID=Msa0301460-mRNA-1;Parent=Msa0301460;Name=Msa0301460-mRNA-1;_AED=0.09;_eAED=0.09;_QI=226|1|1|1|0.85|0.75|8|191|209
chr2_3 exon 57532234 57532393 57532234 ID=Msa0301460-mRNA-1:exon:18567;Parent=Msa0301460-mRNA-1
chr2_3 exon 57532422 57532518 57532422 ID=Msa0301460-mRNA-1:exon:18566;Parent=Msa0301460-mRNA-1
chr2_3 exon 57532792 57532935 57532792 ID=Msa0301460-mRNA-1:exon:18565;Parent=Msa0301460-mRNA-1
chr2_3 exon 57533041 57533111 57533041 ID=Msa0301460-mRNA-1:exon:18564;Parent=Msa0301460-mRNA-1
chr2_3 exon 57536621 57536720 57536621 ID=Msa0301460-mRNA-1:exon:18563;Parent=Msa0301460-mRNA-1
chr2_3 exon 57537736 57537766 57537736 ID=Msa0301460-mRNA-1:exon:18562;Parent=Msa0301460-mRNA-1
chr2_3 exon 57537939 57538036 57537939 ID=Msa0301460-mRNA-1:exon:18561;Parent=Msa0301460-mRNA-1
chr2_3 exon 57538279 57538624 57538279 ID=Msa0301460-mRNA-1:exon:18560;Parent=Msa0301460-mRNA-1
chr2_3 five_prime_UTR 57538399 57538624 57538399 ID=Msa0301460-mRNA-1:five_prime_utr;Parent=Msa0301460-mRNA-1
chr2_3 CDS 57538279 57538398 57538279 ID=Msa0301460-mRNA-1:cds;Parent=Msa0301460-mRNA-1
chr2_3 CDS 57537939 57538036 57537939 ID=Msa0301460-mRNA-1:cds;Parent=Msa0301460-mRNA-1
chr2_3 CDS 57537736 57537766 57537736 ID=Msa0301460-mRNA-1:cds;Parent=Msa0301460-mRNA-1
chr2_3 CDS 57536621 57536720 57536621 ID=Msa0301460-mRNA-1:cds;Parent=Msa0301460-mRNA-1
chr2_3 CDS 57533041 57533111 57533041 ID=Msa0301460-mRNA-1:cds;Parent=Msa0301460-mRNA-1
chr2_3 CDS 57532792 57532935 57532792 ID=Msa0301460-mRNA-1:cds;Parent=Msa0301460-mRNA-1
chr2_3 CDS 57532453 57532518 57532453 ID=Msa0301460-mRNA-1:cds;Parent=Msa0301460-mRNA-1
chr2_3 three_prime_UTR 57532422 57532452 57532422 ID=Msa0301460-mRNA-1:three_prime_utr;Parent=Msa0301460-mRNA-1
chr2_3 three_prime_UTR 57532234 57532393 57532234 ID=Msa0301460-mRNA-1:three_prime_utr;Parent=Msa0301460-mRNA-1
Gene Sequence

>Msa0301460

ATGGAGAGAGAGATAGAGATGAAGCTATCAAAGTTTAAGAGAATTTGTGTGTTTTGTGGTAGTAGCCCTGGTAACAAAACTAGCTATAAGGATGCTGCTATTGAACTTGGAAAAGAATTGGTTTCAAGAAATATTGATCTAGTTTATGGAGGAGGCAGCATTGGTTTGATGGGGTTGATTTCTCAAGCTGTTTATGATGGTGGTCGACATGTAATTGGAGTGATTCCCAAAACACTAATGCCAAGAGAGCTTACTGGTGAAACAGTAGGAGAAGTGAAAGCAGTAGCTGACATGCATCAAAGGAAAGCTGAAATGGCTAGAAATTCTGATGCCTTTATAGCCTTACCAGGTGGGTATGGGACACTTGAGGAGCTCCTTGAGGTGATAACATGGGCTCAACTTGGCATCCATGATAAACCGGTGGGATTGCTGAATGTTGATGGATACTACAATTCCTTTTTGACTTTCATCGACAAAGCTGTGGAGGAAGGATTCATTAGCCCCACAGCTCGCCATATAATTGTGTCTGCACCAACACCAAAAGAGCTTGTCAAAAATATGGAGGAGTATTTCCCACAGCATGAAAGAGTTGCCTCCAAGCTAAGCTGGGAAAATGAACAGCTAGATTAG

Protein sequence

>Msa0301460

MEREIEMKLSKFKRICVFCGSSPGNKTSYKDAAIELGKELVSRNIDLVYGGGSIGLMGLISQAVYDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMARNSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSFLTFIDKAVEEGFISPTARHIIVSAPTPKELVKNMEEYFPQHERVASKLSWENEQLD*