AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1138600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1138600 MtrunA17_Chr7g0219461 97.436 351 9 0 1 351 1 351 0.0 698
Msa1138600 MtrunA17_Chr6g0454781 42.973 370 154 15 1 351 2 333 5.82e-63 204
Msa1138600 MtrunA17_Chr4g0061561 62.185 119 42 2 1 118 2 118 2.09e-45 157
Msa1138600 MtrunA17_Chr3g0086961 44.783 230 101 9 1 209 1 225 1.02e-44 157
Msa1138600 MtrunA17_Chr8g0376571 70.270 74 22 0 47 120 51 124 6.69e-29 116
Msa1138600 MtrunA17_Chr8g0360441 60.526 76 30 0 51 126 48 123 2.00e-24 103
Msa1138600 MtrunA17_Chr4g0040921 58.442 77 32 0 51 127 16 92 5.15e-24 100
Msa1138600 MtrunA17_Chr2g0316391 61.644 73 28 0 51 123 14 86 7.48e-24 99.8
Msa1138600 MtrunA17_Chr2g0325171 60.811 74 29 0 51 124 18 91 2.27e-23 99.0
Msa1138600 MtrunA17_Chr4g0062691 29.856 278 155 11 18 264 90 358 8.43e-16 77.8
Msa1138600 MtrunA17_Chr6g0456881 39.623 106 58 3 58 158 127 231 7.48e-14 72.4
Msa1138600 MtrunA17_Chr7g0220931 50.877 57 28 0 59 115 122 178 3.56e-13 70.1
Msa1138600 MtrunA17_Chr1g0205131 48.333 60 31 0 56 115 108 167 4.95e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1138600 AT3G02150.1 75.000 100 25 0 30 129 47 146 1.58e-45 157
Msa1138600 AT3G02150.2 75.000 100 25 0 30 129 47 146 4.04e-45 158
Msa1138600 AT5G08070.2 71.717 99 24 2 25 123 4 98 2.92e-42 147
Msa1138600 AT5G08070.1 71.717 99 24 2 25 123 4 98 2.92e-42 147
Msa1138600 AT5G60970.1 83.750 80 12 1 43 122 49 127 5.86e-42 150
Msa1138600 AT1G30210.2 75.000 72 18 0 47 118 40 111 9.30e-30 116
Msa1138600 AT1G30210.1 75.000 72 18 0 47 118 40 111 9.30e-30 116
Msa1138600 AT4G18390.1 35.000 260 112 8 47 298 32 242 2.91e-27 110
Msa1138600 AT4G18390.2 35.000 260 112 8 47 298 32 242 2.91e-27 110
Msa1138600 AT1G53230.1 61.842 76 29 0 51 126 43 118 2.06e-25 105
Msa1138600 AT1G53230.2 61.842 76 29 0 51 126 43 118 2.06e-25 105
Msa1138600 AT3G15030.2 60.811 74 29 0 51 124 39 112 1.06e-23 101
Msa1138600 AT3G15030.4 60.811 74 29 0 51 124 39 112 1.06e-23 101
Msa1138600 AT3G15030.3 60.811 74 29 0 51 124 39 112 1.06e-23 101
Msa1138600 AT3G15030.1 60.811 74 29 0 51 124 39 112 1.06e-23 101
Msa1138600 AT2G31070.1 64.615 65 23 0 51 115 23 87 5.21e-21 93.2
Msa1138600 AT1G68800.1 47.761 67 35 0 49 115 104 170 5.34e-15 75.5
Msa1138600 AT1G68800.2 47.761 67 35 0 49 115 104 170 6.10e-15 75.5
Msa1138600 AT1G67260.2 42.105 76 44 0 46 121 76 151 6.29e-15 75.5
Msa1138600 AT1G67260.3 42.105 76 44 0 46 121 76 151 6.29e-15 75.5
Msa1138600 AT1G67260.1 42.105 76 44 0 46 121 76 151 6.82e-15 75.5
Msa1138600 AT3G18550.2 44.048 84 41 2 32 115 129 206 1.24e-13 72.0
Msa1138600 AT3G18550.1 44.048 84 41 2 32 115 129 206 1.37e-13 72.0
Msa1138600 AT3G18550.4 44.048 84 41 2 32 115 129 206 1.37e-13 72.0
Msa1138600 AT3G18550.3 44.048 84 41 2 32 115 129 206 1.56e-13 71.6

Find 61 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAATCACCCTTCATTTAT+TGG 0.099357 7_4:-8221210 Msa1138600:CDS
TGTAACATATTGTTATTATT+TGG 0.154767 7_4:+8221237 None:intergenic
CTTCAAGTCAAAATTCTTCT+TGG 0.156785 7_4:-8221392 Msa1138600:CDS
AGTGAACTCTTGTTCTTTAT+TGG 0.160335 7_4:+8220837 None:intergenic
AATTCTCTTGAAACTTCTTT+AGG 0.204373 7_4:+8221360 None:intergenic
GTTCCTACAGGTGGAAAATT+AGG 0.209351 7_4:+8221507 None:intergenic
CTTGATACTCTGACAATTCT+TGG 0.239929 7_4:+8221726 None:intergenic
GTACTATTCATCAAGTAATT+TGG 0.245121 7_4:+8221324 None:intergenic
TGCTGAAAATTCTTCTCAAT+TGG 0.271973 7_4:-8221130 Msa1138600:CDS
ATTCTCTTGAAACTTCTTTA+GGG 0.288069 7_4:+8221361 None:intergenic
CCAATAAATGAAGGGTGATT+TGG 0.289695 7_4:+8221210 None:intergenic
ATTCTTGGATCTTTCAATCT+TGG 0.296306 7_4:+8221741 None:intergenic
GTCAGAGTATCAAGAGCTTT+TGG 0.318336 7_4:-8221717 Msa1138600:CDS
TAAAGAAGTTTCAAGAGAAT+TGG 0.320601 7_4:-8221358 Msa1138600:CDS
AATTCTTCTCAAATGATGTT+AGG 0.334825 7_4:-8221054 Msa1138600:CDS
TCAATAGGAACAATATTCAT+TGG 0.339202 7_4:-8221425 Msa1138600:CDS
TATGATCTTCAAGATAGGTT+AGG 0.344793 7_4:-8221606 Msa1138600:CDS
GATTGAGAGATAGAAGAATA+AGG 0.365377 7_4:-8221656 Msa1138600:CDS
CCAATGTTGTCTTTATCAAC+TGG 0.374206 7_4:-8221078 Msa1138600:CDS
TGATGAACCTCTTGTTTCAA+TGG 0.375029 7_4:+8221834 None:intergenic
AACAATTGTTCAATTTCAAT+AGG 0.377158 7_4:-8221440 Msa1138600:CDS
AACCTAGCAAAGTTGTTGAT+TGG 0.387978 7_4:-8221575 Msa1138600:CDS
GCTGAAAATTCTTCTCAATT+GGG 0.390841 7_4:-8221129 Msa1138600:CDS
CAACAATCCATCCTTCAGTT+TGG 0.407175 7_4:-8220893 Msa1138600:CDS
GTAGGAACAAATTTCAACTT+TGG 0.419771 7_4:-8221492 Msa1138600:CDS
AACTTTATGATCTTCAAGAT+AGG 0.421843 7_4:-8221611 Msa1138600:CDS
ATGATCTTCAAGATAGGTTA+GGG 0.433727 7_4:-8221605 Msa1138600:CDS
AGCAAAGTATGCACAATAAG+AGG 0.437085 7_4:-8221678 Msa1138600:CDS
TTTAATAAACCAATAAATGA+AGG 0.455410 7_4:+8221201 None:intergenic
CAATAGGAACAATATTCATT+GGG 0.458388 7_4:-8221424 Msa1138600:CDS
TTGAAATTTGTTCCTACAGG+TGG 0.465228 7_4:+8221498 None:intergenic
TTGTTGAGAGAATTAGTCAT+TGG 0.470696 7_4:+8220910 None:intergenic
AAGTTGAAATTTGTTCCTAC+AGG 0.474911 7_4:+8221495 None:intergenic
TTTGATGATAATGATGGTTG+TGG 0.483862 7_4:+8220962 None:intergenic
ACTTGGTACTAATTACCAAT+GGG 0.492610 7_4:-8221169 Msa1138600:CDS
TTCTTCAAATGTTAATGCAA+TGG 0.492790 7_4:-8221013 Msa1138600:CDS
TAGAAATTTGGCCAAACTGA+AGG 0.496121 7_4:+8220882 None:intergenic
TTGTTGAGTTCATTAGAAGA+TGG 0.499012 7_4:+8221465 None:intergenic
TCTTCTCAATTGGGAAACAA+TGG 0.501500 7_4:-8221120 Msa1138600:CDS
TTATTAAATCCTATGCCACT+TGG 0.521662 7_4:-8221186 Msa1138600:CDS
AAATGTTAATGCAATGGAGA+TGG 0.523566 7_4:-8221007 Msa1138600:CDS
ACAGGTGGAAAATTAGGTAA+TGG 0.536982 7_4:+8221513 None:intergenic
CCAGTTGATAAAGACAACAT+TGG 0.545201 7_4:+8221078 None:intergenic
TCAACATTTGATGATAATGA+TGG 0.545561 7_4:+8220956 None:intergenic
AACCAATCAACAACTTTGCT+AGG 0.547433 7_4:+8221573 None:intergenic
TAATTAGTACCAAGTGGCAT+AGG 0.547722 7_4:+8221177 None:intergenic
GATGAAAATATTAACAAGCA+AGG 0.549563 7_4:-8221294 Msa1138600:CDS
CACTTGGTACTAATTACCAA+TGG 0.556420 7_4:-8221170 Msa1138600:CDS
CATTGGAAGTACCTCCCCAT+TGG 0.558728 7_4:+8221154 None:intergenic
AATTTGGCCAAACTGAAGGA+TGG 0.562622 7_4:+8220886 None:intergenic
TGGCCATTGTGATGAAGCTA+AGG 0.563573 7_4:+8221761 None:intergenic
AGGAACAATATTCATTGGGA+AGG 0.563907 7_4:-8221420 Msa1138600:CDS
GGTGGAAAATTAGGTAATGG+TGG 0.564196 7_4:+8221516 None:intergenic
GTTGATAAAGACAACATTGG+TGG 0.570845 7_4:+8221081 None:intergenic
TCATAAAGTTGAATAGCTGT+TGG 0.592296 7_4:+8221624 None:intergenic
TTAATAAACCAATAAATGAA+GGG 0.612685 7_4:+8221202 None:intergenic
GAAGCTAAGGAGCTTGATGA+TGG 0.616225 7_4:+8221774 None:intergenic
GCTCCTTAGCTTCATCACAA+TGG 0.647279 7_4:-8221764 Msa1138600:CDS
GGTACTAATTACCAATGGGG+AGG 0.679474 7_4:-8221165 Msa1138600:CDS
CATTGGTAATTAGTACCAAG+TGG 0.701178 7_4:+8221171 None:intergenic
CTTGGTACTAATTACCAATG+GGG 0.737610 7_4:-8221168 Msa1138600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTAACATATTGTTATTATT+TGG + chr7_4:8221455-8221474 None:intergenic 15.0%
!! TTAATAAACCAATAAATGAA+GGG + chr7_4:8221490-8221509 None:intergenic 15.0%
!! TTTAATAAACCAATAAATGA+AGG + chr7_4:8221491-8221510 None:intergenic 15.0%
!!! TGTAACATATTGTTATTATT+TGG + chr7_4:8221455-8221474 None:intergenic 15.0%
!! TTAATAAACCAATAAATGAA+GGG + chr7_4:8221490-8221509 None:intergenic 15.0%
!! TTTAATAAACCAATAAATGA+AGG + chr7_4:8221491-8221510 None:intergenic 15.0%
!! AACAATTGTTCAATTTCAAT+AGG - chr7_4:8221249-8221268 Msa1138600:CDS 20.0%
!! AACAATTGTTCAATTTCAAT+AGG - chr7_4:8221249-8221268 Msa1138600:CDS 20.0%
! AAACGATCATGAAAAAGAAA+AGG - chr7_4:8220884-8220903 Msa1138600:CDS 25.0%
! AACTTTATGATCTTCAAGAT+AGG - chr7_4:8221078-8221097 Msa1138600:CDS 25.0%
! TCAATAGGAACAATATTCAT+TGG - chr7_4:8221264-8221283 Msa1138600:CDS 25.0%
! CAATAGGAACAATATTCATT+GGG - chr7_4:8221265-8221284 Msa1138600:CDS 25.0%
! ATTCTCTTGAAACTTCTTTA+GGG + chr7_4:8221331-8221350 None:intergenic 25.0%
! AATTCTCTTGAAACTTCTTT+AGG + chr7_4:8221332-8221351 None:intergenic 25.0%
! TAAAGAAGTTTCAAGAGAAT+TGG - chr7_4:8221331-8221350 Msa1138600:CDS 25.0%
! GTACTATTCATCAAGTAATT+TGG + chr7_4:8221368-8221387 None:intergenic 25.0%
! GATGAAAATATTAACAAGCA+AGG - chr7_4:8221395-8221414 Msa1138600:CDS 25.0%
! AATTCTTCTCAAATGATGTT+AGG - chr7_4:8221635-8221654 Msa1138600:CDS 25.0%
! TTCTTCAAATGTTAATGCAA+TGG - chr7_4:8221676-8221695 Msa1138600:CDS 25.0%
!! TCAACATTTGATGATAATGA+TGG + chr7_4:8221736-8221755 None:intergenic 25.0%
! AAACGATCATGAAAAAGAAA+AGG - chr7_4:8220884-8220903 Msa1138600:CDS 25.0%
! AACTTTATGATCTTCAAGAT+AGG - chr7_4:8221078-8221097 Msa1138600:CDS 25.0%
! TCAATAGGAACAATATTCAT+TGG - chr7_4:8221264-8221283 Msa1138600:CDS 25.0%
! CAATAGGAACAATATTCATT+GGG - chr7_4:8221265-8221284 Msa1138600:CDS 25.0%
! ATTCTCTTGAAACTTCTTTA+GGG + chr7_4:8221331-8221350 None:intergenic 25.0%
! AATTCTCTTGAAACTTCTTT+AGG + chr7_4:8221332-8221351 None:intergenic 25.0%
! TAAAGAAGTTTCAAGAGAAT+TGG - chr7_4:8221331-8221350 Msa1138600:CDS 25.0%
! GTACTATTCATCAAGTAATT+TGG + chr7_4:8221368-8221387 None:intergenic 25.0%
! GATGAAAATATTAACAAGCA+AGG - chr7_4:8221395-8221414 Msa1138600:CDS 25.0%
! AATTCTTCTCAAATGATGTT+AGG - chr7_4:8221635-8221654 Msa1138600:CDS 25.0%
! TTCTTCAAATGTTAATGCAA+TGG - chr7_4:8221676-8221695 Msa1138600:CDS 25.0%
!! TCAACATTTGATGATAATGA+TGG + chr7_4:8221736-8221755 None:intergenic 25.0%
! AGATTTTCCATTGAAACAAG+AGG - chr7_4:8220848-8220867 Msa1138600:CDS 30.0%
ATTCTTGGATCTTTCAATCT+TGG + chr7_4:8220951-8220970 None:intergenic 30.0%
GATTGAGAGATAGAAGAATA+AGG - chr7_4:8221033-8221052 Msa1138600:CDS 30.0%
TCATAAAGTTGAATAGCTGT+TGG + chr7_4:8221068-8221087 None:intergenic 30.0%
TATGATCTTCAAGATAGGTT+AGG - chr7_4:8221083-8221102 Msa1138600:CDS 30.0%
ATGATCTTCAAGATAGGTTA+GGG - chr7_4:8221084-8221103 Msa1138600:CDS 30.0%
! AAGTTGAAATTTGTTCCTAC+AGG + chr7_4:8221197-8221216 None:intergenic 30.0%
GTAGGAACAAATTTCAACTT+TGG - chr7_4:8221197-8221216 Msa1138600:CDS 30.0%
TTGTTGAGTTCATTAGAAGA+TGG + chr7_4:8221227-8221246 None:intergenic 30.0%
CTTCAAGTCAAAATTCTTCT+TGG - chr7_4:8221297-8221316 Msa1138600:CDS 30.0%
TTTGGAAAAACATTTGCAGT+AGG + chr7_4:8221437-8221456 None:intergenic 30.0%
TTATTAAATCCTATGCCACT+TGG - chr7_4:8221503-8221522 Msa1138600:CDS 30.0%
ACTTGGTACTAATTACCAAT+GGG - chr7_4:8221520-8221539 Msa1138600:CDS 30.0%
! AGAAGAATTTTCAGCATCAT+TGG + chr7_4:8221555-8221574 None:intergenic 30.0%
TGCTGAAAATTCTTCTCAAT+TGG - chr7_4:8221559-8221578 Msa1138600:CDS 30.0%
GCTGAAAATTCTTCTCAATT+GGG - chr7_4:8221560-8221579 Msa1138600:CDS 30.0%
AAATGTTAATGCAATGGAGA+TGG - chr7_4:8221682-8221701 Msa1138600:CDS 30.0%
! TTTGATGATAATGATGGTTG+TGG + chr7_4:8221730-8221749 None:intergenic 30.0%
TTGTTGAGAGAATTAGTCAT+TGG + chr7_4:8221782-8221801 None:intergenic 30.0%
!!! TCTGCTGTTTTGTAGAAATT+TGG + chr7_4:8221822-8221841 None:intergenic 30.0%
AGTGAACTCTTGTTCTTTAT+TGG + chr7_4:8221855-8221874 None:intergenic 30.0%
! AGATTTTCCATTGAAACAAG+AGG - chr7_4:8220848-8220867 Msa1138600:CDS 30.0%
ATTCTTGGATCTTTCAATCT+TGG + chr7_4:8220951-8220970 None:intergenic 30.0%
GATTGAGAGATAGAAGAATA+AGG - chr7_4:8221033-8221052 Msa1138600:CDS 30.0%
TCATAAAGTTGAATAGCTGT+TGG + chr7_4:8221068-8221087 None:intergenic 30.0%
TATGATCTTCAAGATAGGTT+AGG - chr7_4:8221083-8221102 Msa1138600:CDS 30.0%
ATGATCTTCAAGATAGGTTA+GGG - chr7_4:8221084-8221103 Msa1138600:CDS 30.0%
! AAGTTGAAATTTGTTCCTAC+AGG + chr7_4:8221197-8221216 None:intergenic 30.0%
GTAGGAACAAATTTCAACTT+TGG - chr7_4:8221197-8221216 Msa1138600:CDS 30.0%
TTGTTGAGTTCATTAGAAGA+TGG + chr7_4:8221227-8221246 None:intergenic 30.0%
CTTCAAGTCAAAATTCTTCT+TGG - chr7_4:8221297-8221316 Msa1138600:CDS 30.0%
TTTGGAAAAACATTTGCAGT+AGG + chr7_4:8221437-8221456 None:intergenic 30.0%
TTATTAAATCCTATGCCACT+TGG - chr7_4:8221503-8221522 Msa1138600:CDS 30.0%
ACTTGGTACTAATTACCAAT+GGG - chr7_4:8221520-8221539 Msa1138600:CDS 30.0%
! AGAAGAATTTTCAGCATCAT+TGG + chr7_4:8221555-8221574 None:intergenic 30.0%
TGCTGAAAATTCTTCTCAAT+TGG - chr7_4:8221559-8221578 Msa1138600:CDS 30.0%
GCTGAAAATTCTTCTCAATT+GGG - chr7_4:8221560-8221579 Msa1138600:CDS 30.0%
AAATGTTAATGCAATGGAGA+TGG - chr7_4:8221682-8221701 Msa1138600:CDS 30.0%
! TTTGATGATAATGATGGTTG+TGG + chr7_4:8221730-8221749 None:intergenic 30.0%
TTGTTGAGAGAATTAGTCAT+TGG + chr7_4:8221782-8221801 None:intergenic 30.0%
!!! TCTGCTGTTTTGTAGAAATT+TGG + chr7_4:8221822-8221841 None:intergenic 30.0%
AGTGAACTCTTGTTCTTTAT+TGG + chr7_4:8221855-8221874 None:intergenic 30.0%
! TGATGAACCTCTTGTTTCAA+TGG + chr7_4:8220858-8220877 None:intergenic 35.0%
CTTGATACTCTGACAATTCT+TGG + chr7_4:8220966-8220985 None:intergenic 35.0%
AGCAAAGTATGCACAATAAG+AGG - chr7_4:8221011-8221030 Msa1138600:CDS 35.0%
AACCTAGCAAAGTTGTTGAT+TGG - chr7_4:8221114-8221133 Msa1138600:CDS 35.0%
AACCAATCAACAACTTTGCT+AGG + chr7_4:8221119-8221138 None:intergenic 35.0%
ACAGGTGGAAAATTAGGTAA+TGG + chr7_4:8221179-8221198 None:intergenic 35.0%
! TTACCTAATTTTCCACCTGT+AGG - chr7_4:8221179-8221198 Msa1138600:CDS 35.0%
! TTGAAATTTGTTCCTACAGG+TGG + chr7_4:8221194-8221213 None:intergenic 35.0%
AGGAACAATATTCATTGGGA+AGG - chr7_4:8221269-8221288 Msa1138600:CDS 35.0%
CCAATAAATGAAGGGTGATT+TGG + chr7_4:8221482-8221501 None:intergenic 35.0%
CCAAATCACCCTTCATTTAT+TGG - chr7_4:8221479-8221498 Msa1138600:CDS 35.0%
TAATTAGTACCAAGTGGCAT+AGG + chr7_4:8221515-8221534 None:intergenic 35.0%
! CATTGGTAATTAGTACCAAG+TGG + chr7_4:8221521-8221540 None:intergenic 35.0%
CACTTGGTACTAATTACCAA+TGG - chr7_4:8221519-8221538 Msa1138600:CDS 35.0%
CTTGGTACTAATTACCAATG+GGG - chr7_4:8221521-8221540 Msa1138600:CDS 35.0%
TCTTCTCAATTGGGAAACAA+TGG - chr7_4:8221569-8221588 Msa1138600:CDS 35.0%
! GTTGATAAAGACAACATTGG+TGG + chr7_4:8221611-8221630 None:intergenic 35.0%
!! CCAGTTGATAAAGACAACAT+TGG + chr7_4:8221614-8221633 None:intergenic 35.0%
CCAATGTTGTCTTTATCAAC+TGG - chr7_4:8221611-8221630 Msa1138600:CDS 35.0%
TAGAAATTTGGCCAAACTGA+AGG + chr7_4:8221810-8221829 None:intergenic 35.0%
! TGATGAACCTCTTGTTTCAA+TGG + chr7_4:8220858-8220877 None:intergenic 35.0%
CTTGATACTCTGACAATTCT+TGG + chr7_4:8220966-8220985 None:intergenic 35.0%
AGCAAAGTATGCACAATAAG+AGG - chr7_4:8221011-8221030 Msa1138600:CDS 35.0%
AACCTAGCAAAGTTGTTGAT+TGG - chr7_4:8221114-8221133 Msa1138600:CDS 35.0%
AACCAATCAACAACTTTGCT+AGG + chr7_4:8221119-8221138 None:intergenic 35.0%
ACAGGTGGAAAATTAGGTAA+TGG + chr7_4:8221179-8221198 None:intergenic 35.0%
! TTACCTAATTTTCCACCTGT+AGG - chr7_4:8221179-8221198 Msa1138600:CDS 35.0%
! TTGAAATTTGTTCCTACAGG+TGG + chr7_4:8221194-8221213 None:intergenic 35.0%
AGGAACAATATTCATTGGGA+AGG - chr7_4:8221269-8221288 Msa1138600:CDS 35.0%
CCAATAAATGAAGGGTGATT+TGG + chr7_4:8221482-8221501 None:intergenic 35.0%
CCAAATCACCCTTCATTTAT+TGG - chr7_4:8221479-8221498 Msa1138600:CDS 35.0%
TAATTAGTACCAAGTGGCAT+AGG + chr7_4:8221515-8221534 None:intergenic 35.0%
! CATTGGTAATTAGTACCAAG+TGG + chr7_4:8221521-8221540 None:intergenic 35.0%
CACTTGGTACTAATTACCAA+TGG - chr7_4:8221519-8221538 Msa1138600:CDS 35.0%
CTTGGTACTAATTACCAATG+GGG - chr7_4:8221521-8221540 Msa1138600:CDS 35.0%
TCTTCTCAATTGGGAAACAA+TGG - chr7_4:8221569-8221588 Msa1138600:CDS 35.0%
! GTTGATAAAGACAACATTGG+TGG + chr7_4:8221611-8221630 None:intergenic 35.0%
!! CCAGTTGATAAAGACAACAT+TGG + chr7_4:8221614-8221633 None:intergenic 35.0%
CCAATGTTGTCTTTATCAAC+TGG - chr7_4:8221611-8221630 Msa1138600:CDS 35.0%
TAGAAATTTGGCCAAACTGA+AGG + chr7_4:8221810-8221829 None:intergenic 35.0%
!! GTCAGAGTATCAAGAGCTTT+TGG - chr7_4:8220972-8220991 Msa1138600:CDS 40.0%
!! AGAGTATCAAGAGCTTTTGG+TGG - chr7_4:8220975-8220994 Msa1138600:CDS 40.0%
! GGTGGAAAATTAGGTAATGG+TGG + chr7_4:8221176-8221195 None:intergenic 40.0%
GTTCCTACAGGTGGAAAATT+AGG + chr7_4:8221185-8221204 None:intergenic 40.0%
CAACAATCCATCCTTCAGTT+TGG - chr7_4:8221796-8221815 Msa1138600:CDS 40.0%
AATTTGGCCAAACTGAAGGA+TGG + chr7_4:8221806-8221825 None:intergenic 40.0%
!! GTCAGAGTATCAAGAGCTTT+TGG - chr7_4:8220972-8220991 Msa1138600:CDS 40.0%
!! AGAGTATCAAGAGCTTTTGG+TGG - chr7_4:8220975-8220994 Msa1138600:CDS 40.0%
! GGTGGAAAATTAGGTAATGG+TGG + chr7_4:8221176-8221195 None:intergenic 40.0%
GTTCCTACAGGTGGAAAATT+AGG + chr7_4:8221185-8221204 None:intergenic 40.0%
CAACAATCCATCCTTCAGTT+TGG - chr7_4:8221796-8221815 Msa1138600:CDS 40.0%
AATTTGGCCAAACTGAAGGA+TGG + chr7_4:8221806-8221825 None:intergenic 40.0%
GAAGCTAAGGAGCTTGATGA+TGG + chr7_4:8220918-8220937 None:intergenic 45.0%
GCTCCTTAGCTTCATCACAA+TGG - chr7_4:8220925-8220944 Msa1138600:CDS 45.0%
TGGCCATTGTGATGAAGCTA+AGG + chr7_4:8220931-8220950 None:intergenic 45.0%
GGTACTAATTACCAATGGGG+AGG - chr7_4:8221524-8221543 Msa1138600:CDS 45.0%
GAAGCTAAGGAGCTTGATGA+TGG + chr7_4:8220918-8220937 None:intergenic 45.0%
GCTCCTTAGCTTCATCACAA+TGG - chr7_4:8220925-8220944 Msa1138600:CDS 45.0%
TGGCCATTGTGATGAAGCTA+AGG + chr7_4:8220931-8220950 None:intergenic 45.0%
GGTACTAATTACCAATGGGG+AGG - chr7_4:8221524-8221543 Msa1138600:CDS 45.0%
!! CATTGGAAGTACCTCCCCAT+TGG + chr7_4:8221538-8221557 None:intergenic 50.0%
!! CATTGGAAGTACCTCCCCAT+TGG + chr7_4:8221538-8221557 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 8220828 8221883 8220828 ID=Msa1138600;Name=Msa1138600
chr7_4 mRNA 8220828 8221883 8220828 ID=Msa1138600-mRNA-1;Parent=Msa1138600;Name=Msa1138600-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|-1|0|1|-1|1|1|0|351
chr7_4 exon 8220828 8221883 8220828 ID=Msa1138600-mRNA-1:exon:2245;Parent=Msa1138600-mRNA-1
chr7_4 CDS 8220828 8221883 8220828 ID=Msa1138600-mRNA-1:cds;Parent=Msa1138600-mRNA-1
Gene Sequence

>Msa1138600

ATGAATAAGAATTCAAAAGAAGATTTTCCATTGAAACAAGAGGTTCATCAAAATTCAAACGATCATGAAAAAGAAAAGGCTAATTCACCATCATCAAGCTCCTTAGCTTCATCACAATGGCCAAGATTGAAAGATCCAAGAATTGTCAGAGTATCAAGAGCTTTTGGTGGAAAAGATAGACATAGCAAAGTATGCACAATAAGAGGATTGAGAGATAGAAGAATAAGGCTTTCAGTACCAACAGCTATTCAACTTTATGATCTTCAAGATAGGTTAGGGCTTAATCAACCTAGCAAAGTTGTTGATTGGTTGCTCAATGCAGCTAAACATGACATTGATCAACTTCCACCATTACCTAATTTTCCACCTGTAGGAACAAATTTCAACTTTGGTTTTCCATCTTCTAATGAACTCAACAATCAACAATTGTTCAATTTCAATAGGAACAATATTCATTGGGAAGGTTCAACTTCAAGTCAAAATTCTTCTTGGAAATCAAACCCTAAAGAAGTTTCAAGAGAATTGGTTAATGATAAACCAAATTACTTGATGAATAGTACTCAAGAAGATGAAAATATTAACAAGCAAGGAAGCAATATTGAAGTTCCTACTGCAAATGTTTTTCCAAATAATAACAATATGTTACAAAGACCAAATCACCCTTCATTTATTGGTTTATTAAATCCTATGCCACTTGGTACTAATTACCAATGGGGAGGTACTTCCAATGATGCTGAAAATTCTTCTCAATTGGGAAACAATGGCTTTATTACATCTTTGCCACCAATGTTGTCTTTATCAACTGGAAATTCTTCTCAAATGATGTTAGGAACAACACAATCATATTTTTCTTCAAATGTTAATGCAATGGAGATGGATCATCATCATCAAAGAGAAATCCACAACCATCATTATCATCAAATGTTGAGTTCATCAAGTTCTTCTCAGAATCCAATGACTAATTCTCTCAACAATCCATCCTTCAGTTTGGCCAAATTTCTACAAAACAGCAGAGAAAATTCATCCAATAAAGAACAAGAGTTCACTACAAAGTGA

Protein sequence

>Msa1138600

MNKNSKEDFPLKQEVHQNSNDHEKEKANSPSSSSLASSQWPRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHDIDQLPPLPNFPPVGTNFNFGFPSSNELNNQQLFNFNRNNIHWEGSTSSQNSSWKSNPKEVSRELVNDKPNYLMNSTQEDENINKQGSNIEVPTANVFPNNNNMLQRPNHPSFIGLLNPMPLGTNYQWGGTSNDAENSSQLGNNGFITSLPPMLSLSTGNSSQMMLGTTQSYFSSNVNAMEMDHHHQREIHNHHYHQMLSSSSSSQNPMTNSLNNPSFSLAKFLQNSRENSSNKEQEFTTK*