AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0793060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0793060 MtrunA17_Chr7g0219461 97.436 351 9 0 1 351 1 351 0.0 698
Msa0793060 MtrunA17_Chr6g0454781 42.973 370 154 15 1 351 2 333 5.82e-63 204
Msa0793060 MtrunA17_Chr4g0061561 62.185 119 42 2 1 118 2 118 2.09e-45 157
Msa0793060 MtrunA17_Chr3g0086961 44.783 230 101 9 1 209 1 225 1.02e-44 157
Msa0793060 MtrunA17_Chr8g0376571 70.270 74 22 0 47 120 51 124 6.69e-29 116
Msa0793060 MtrunA17_Chr8g0360441 60.526 76 30 0 51 126 48 123 2.00e-24 103
Msa0793060 MtrunA17_Chr4g0040921 58.442 77 32 0 51 127 16 92 5.15e-24 100
Msa0793060 MtrunA17_Chr2g0316391 61.644 73 28 0 51 123 14 86 7.48e-24 99.8
Msa0793060 MtrunA17_Chr2g0325171 60.811 74 29 0 51 124 18 91 2.27e-23 99.0
Msa0793060 MtrunA17_Chr4g0062691 29.856 278 155 11 18 264 90 358 8.43e-16 77.8
Msa0793060 MtrunA17_Chr6g0456881 39.623 106 58 3 58 158 127 231 7.48e-14 72.4
Msa0793060 MtrunA17_Chr7g0220931 50.877 57 28 0 59 115 122 178 3.56e-13 70.1
Msa0793060 MtrunA17_Chr1g0205131 48.333 60 31 0 56 115 108 167 4.95e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0793060 AT3G02150.1 75.000 100 25 0 30 129 47 146 1.58e-45 157
Msa0793060 AT3G02150.2 75.000 100 25 0 30 129 47 146 4.04e-45 158
Msa0793060 AT5G08070.2 71.717 99 24 2 25 123 4 98 2.92e-42 147
Msa0793060 AT5G08070.1 71.717 99 24 2 25 123 4 98 2.92e-42 147
Msa0793060 AT5G60970.1 83.750 80 12 1 43 122 49 127 5.86e-42 150
Msa0793060 AT1G30210.2 75.000 72 18 0 47 118 40 111 9.30e-30 116
Msa0793060 AT1G30210.1 75.000 72 18 0 47 118 40 111 9.30e-30 116
Msa0793060 AT4G18390.1 35.000 260 112 8 47 298 32 242 2.91e-27 110
Msa0793060 AT4G18390.2 35.000 260 112 8 47 298 32 242 2.91e-27 110
Msa0793060 AT1G53230.1 61.842 76 29 0 51 126 43 118 2.06e-25 105
Msa0793060 AT1G53230.2 61.842 76 29 0 51 126 43 118 2.06e-25 105
Msa0793060 AT3G15030.2 60.811 74 29 0 51 124 39 112 1.06e-23 101
Msa0793060 AT3G15030.4 60.811 74 29 0 51 124 39 112 1.06e-23 101
Msa0793060 AT3G15030.3 60.811 74 29 0 51 124 39 112 1.06e-23 101
Msa0793060 AT3G15030.1 60.811 74 29 0 51 124 39 112 1.06e-23 101
Msa0793060 AT2G31070.1 64.615 65 23 0 51 115 23 87 5.21e-21 93.2
Msa0793060 AT1G68800.1 47.761 67 35 0 49 115 104 170 5.34e-15 75.5
Msa0793060 AT1G68800.2 47.761 67 35 0 49 115 104 170 6.10e-15 75.5
Msa0793060 AT1G67260.2 42.105 76 44 0 46 121 76 151 6.29e-15 75.5
Msa0793060 AT1G67260.3 42.105 76 44 0 46 121 76 151 6.29e-15 75.5
Msa0793060 AT1G67260.1 42.105 76 44 0 46 121 76 151 6.82e-15 75.5
Msa0793060 AT3G18550.2 44.048 84 41 2 32 115 129 206 1.24e-13 72.0
Msa0793060 AT3G18550.1 44.048 84 41 2 32 115 129 206 1.37e-13 72.0
Msa0793060 AT3G18550.4 44.048 84 41 2 32 115 129 206 1.37e-13 72.0
Msa0793060 AT3G18550.3 44.048 84 41 2 32 115 129 206 1.56e-13 71.6

Find 61 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAATCACCCTTCATTTAT+TGG 0.099357 5_3:+5015155 Msa0793060:CDS
TGTAACATATTGTTATTATT+TGG 0.154767 5_3:-5015128 None:intergenic
CTTCAAGTCAAAATTCTTCT+TGG 0.156785 5_3:+5014973 Msa0793060:CDS
AGTGAACTCTTGTTCTTTAT+TGG 0.160335 5_3:-5015528 None:intergenic
AATTCTCTTGAAACTTCTTT+AGG 0.204373 5_3:-5015005 None:intergenic
GTTCCTACAGGTGGAAAATT+AGG 0.209351 5_3:-5014858 None:intergenic
CTTGATACTCTGACAATTCT+TGG 0.239929 5_3:-5014639 None:intergenic
GTACTATTCATCAAGTAATT+TGG 0.245121 5_3:-5015041 None:intergenic
TGCTGAAAATTCTTCTCAAT+TGG 0.271973 5_3:+5015235 Msa0793060:CDS
ATTCTCTTGAAACTTCTTTA+GGG 0.288069 5_3:-5015004 None:intergenic
CCAATAAATGAAGGGTGATT+TGG 0.289695 5_3:-5015155 None:intergenic
ATTCTTGGATCTTTCAATCT+TGG 0.296306 5_3:-5014624 None:intergenic
GTCAGAGTATCAAGAGCTTT+TGG 0.318336 5_3:+5014648 Msa0793060:CDS
TAAAGAAGTTTCAAGAGAAT+TGG 0.320601 5_3:+5015007 Msa0793060:CDS
AATTCTTCTCAAATGATGTT+AGG 0.334825 5_3:+5015311 Msa0793060:CDS
TCAATAGGAACAATATTCAT+TGG 0.339202 5_3:+5014940 Msa0793060:CDS
TATGATCTTCAAGATAGGTT+AGG 0.344793 5_3:+5014759 Msa0793060:CDS
GATTGAGAGATAGAAGAATA+AGG 0.365377 5_3:+5014709 Msa0793060:CDS
CCAATGTTGTCTTTATCAAC+TGG 0.374206 5_3:+5015287 Msa0793060:CDS
TGATGAACCTCTTGTTTCAA+TGG 0.375029 5_3:-5014531 None:intergenic
AACAATTGTTCAATTTCAAT+AGG 0.377158 5_3:+5014925 Msa0793060:CDS
AACCTAGCAAAGTTGTTGAT+TGG 0.387978 5_3:+5014790 Msa0793060:CDS
GCTGAAAATTCTTCTCAATT+GGG 0.390841 5_3:+5015236 Msa0793060:CDS
CAACAATCCATCCTTCAGTT+TGG 0.407175 5_3:+5015472 Msa0793060:CDS
GTAGGAACAAATTTCAACTT+TGG 0.419771 5_3:+5014873 Msa0793060:CDS
AACTTTATGATCTTCAAGAT+AGG 0.421843 5_3:+5014754 Msa0793060:CDS
ATGATCTTCAAGATAGGTTA+GGG 0.433727 5_3:+5014760 Msa0793060:CDS
AGCAAAGTATGCACAATAAG+AGG 0.437085 5_3:+5014687 Msa0793060:CDS
TTTAATAAACCAATAAATGA+AGG 0.455410 5_3:-5015164 None:intergenic
CAATAGGAACAATATTCATT+GGG 0.458388 5_3:+5014941 Msa0793060:CDS
TTGAAATTTGTTCCTACAGG+TGG 0.465228 5_3:-5014867 None:intergenic
TTGTTGAGAGAATTAGTCAT+TGG 0.470696 5_3:-5015455 None:intergenic
AAGTTGAAATTTGTTCCTAC+AGG 0.474911 5_3:-5014870 None:intergenic
TTTGATGATAATGATGGTTG+TGG 0.483862 5_3:-5015403 None:intergenic
ACTTGGTACTAATTACCAAT+GGG 0.492610 5_3:+5015196 Msa0793060:CDS
TTCTTCAAATGTTAATGCAA+TGG 0.492790 5_3:+5015352 Msa0793060:CDS
TAGAAATTTGGCCAAACTGA+AGG 0.496121 5_3:-5015483 None:intergenic
TTGTTGAGTTCATTAGAAGA+TGG 0.499012 5_3:-5014900 None:intergenic
TCTTCTCAATTGGGAAACAA+TGG 0.501500 5_3:+5015245 Msa0793060:CDS
TTATTAAATCCTATGCCACT+TGG 0.521662 5_3:+5015179 Msa0793060:CDS
AAATGTTAATGCAATGGAGA+TGG 0.523566 5_3:+5015358 Msa0793060:CDS
ACAGGTGGAAAATTAGGTAA+TGG 0.536982 5_3:-5014852 None:intergenic
CCAGTTGATAAAGACAACAT+TGG 0.545201 5_3:-5015287 None:intergenic
TCAACATTTGATGATAATGA+TGG 0.545561 5_3:-5015409 None:intergenic
AACCAATCAACAACTTTGCT+AGG 0.547433 5_3:-5014792 None:intergenic
TAATTAGTACCAAGTGGCAT+AGG 0.547722 5_3:-5015188 None:intergenic
GATGAAAATATTAACAAGCA+AGG 0.549563 5_3:+5015071 Msa0793060:CDS
CACTTGGTACTAATTACCAA+TGG 0.556420 5_3:+5015195 Msa0793060:CDS
CATTGGAAGTACCTCCCCAT+TGG 0.558728 5_3:-5015211 None:intergenic
AATTTGGCCAAACTGAAGGA+TGG 0.562622 5_3:-5015479 None:intergenic
TGGCCATTGTGATGAAGCTA+AGG 0.563573 5_3:-5014604 None:intergenic
AGGAACAATATTCATTGGGA+AGG 0.563907 5_3:+5014945 Msa0793060:CDS
GGTGGAAAATTAGGTAATGG+TGG 0.564196 5_3:-5014849 None:intergenic
GTTGATAAAGACAACATTGG+TGG 0.570845 5_3:-5015284 None:intergenic
TCATAAAGTTGAATAGCTGT+TGG 0.592296 5_3:-5014741 None:intergenic
TTAATAAACCAATAAATGAA+GGG 0.612685 5_3:-5015163 None:intergenic
GAAGCTAAGGAGCTTGATGA+TGG 0.616225 5_3:-5014591 None:intergenic
GCTCCTTAGCTTCATCACAA+TGG 0.647279 5_3:+5014601 Msa0793060:CDS
GGTACTAATTACCAATGGGG+AGG 0.679474 5_3:+5015200 Msa0793060:CDS
CATTGGTAATTAGTACCAAG+TGG 0.701178 5_3:-5015194 None:intergenic
CTTGGTACTAATTACCAATG+GGG 0.737610 5_3:+5015197 Msa0793060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTAACATATTGTTATTATT+TGG - chr5_3:5015131-5015150 None:intergenic 15.0%
!! TTAATAAACCAATAAATGAA+GGG - chr5_3:5015166-5015185 None:intergenic 15.0%
!! TTTAATAAACCAATAAATGA+AGG - chr5_3:5015167-5015186 None:intergenic 15.0%
!!! TGTAACATATTGTTATTATT+TGG - chr5_3:5015131-5015150 None:intergenic 15.0%
!! TTAATAAACCAATAAATGAA+GGG - chr5_3:5015166-5015185 None:intergenic 15.0%
!! TTTAATAAACCAATAAATGA+AGG - chr5_3:5015167-5015186 None:intergenic 15.0%
!! AACAATTGTTCAATTTCAAT+AGG + chr5_3:5014925-5014944 Msa0793060:CDS 20.0%
!! AACAATTGTTCAATTTCAAT+AGG + chr5_3:5014925-5014944 Msa0793060:CDS 20.0%
! AAACGATCATGAAAAAGAAA+AGG + chr5_3:5014560-5014579 Msa0793060:CDS 25.0%
! AACTTTATGATCTTCAAGAT+AGG + chr5_3:5014754-5014773 Msa0793060:CDS 25.0%
! TCAATAGGAACAATATTCAT+TGG + chr5_3:5014940-5014959 Msa0793060:CDS 25.0%
! CAATAGGAACAATATTCATT+GGG + chr5_3:5014941-5014960 Msa0793060:CDS 25.0%
! ATTCTCTTGAAACTTCTTTA+GGG - chr5_3:5015007-5015026 None:intergenic 25.0%
! AATTCTCTTGAAACTTCTTT+AGG - chr5_3:5015008-5015027 None:intergenic 25.0%
! TAAAGAAGTTTCAAGAGAAT+TGG + chr5_3:5015007-5015026 Msa0793060:CDS 25.0%
! GTACTATTCATCAAGTAATT+TGG - chr5_3:5015044-5015063 None:intergenic 25.0%
! GATGAAAATATTAACAAGCA+AGG + chr5_3:5015071-5015090 Msa0793060:CDS 25.0%
! AATTCTTCTCAAATGATGTT+AGG + chr5_3:5015311-5015330 Msa0793060:CDS 25.0%
! TTCTTCAAATGTTAATGCAA+TGG + chr5_3:5015352-5015371 Msa0793060:CDS 25.0%
!! TCAACATTTGATGATAATGA+TGG - chr5_3:5015412-5015431 None:intergenic 25.0%
! AAACGATCATGAAAAAGAAA+AGG + chr5_3:5014560-5014579 Msa0793060:CDS 25.0%
! AACTTTATGATCTTCAAGAT+AGG + chr5_3:5014754-5014773 Msa0793060:CDS 25.0%
! TCAATAGGAACAATATTCAT+TGG + chr5_3:5014940-5014959 Msa0793060:CDS 25.0%
! CAATAGGAACAATATTCATT+GGG + chr5_3:5014941-5014960 Msa0793060:CDS 25.0%
! ATTCTCTTGAAACTTCTTTA+GGG - chr5_3:5015007-5015026 None:intergenic 25.0%
! AATTCTCTTGAAACTTCTTT+AGG - chr5_3:5015008-5015027 None:intergenic 25.0%
! TAAAGAAGTTTCAAGAGAAT+TGG + chr5_3:5015007-5015026 Msa0793060:CDS 25.0%
! GTACTATTCATCAAGTAATT+TGG - chr5_3:5015044-5015063 None:intergenic 25.0%
! GATGAAAATATTAACAAGCA+AGG + chr5_3:5015071-5015090 Msa0793060:CDS 25.0%
! AATTCTTCTCAAATGATGTT+AGG + chr5_3:5015311-5015330 Msa0793060:CDS 25.0%
! TTCTTCAAATGTTAATGCAA+TGG + chr5_3:5015352-5015371 Msa0793060:CDS 25.0%
!! TCAACATTTGATGATAATGA+TGG - chr5_3:5015412-5015431 None:intergenic 25.0%
! AGATTTTCCATTGAAACAAG+AGG + chr5_3:5014524-5014543 Msa0793060:CDS 30.0%
ATTCTTGGATCTTTCAATCT+TGG - chr5_3:5014627-5014646 None:intergenic 30.0%
GATTGAGAGATAGAAGAATA+AGG + chr5_3:5014709-5014728 Msa0793060:CDS 30.0%
TCATAAAGTTGAATAGCTGT+TGG - chr5_3:5014744-5014763 None:intergenic 30.0%
TATGATCTTCAAGATAGGTT+AGG + chr5_3:5014759-5014778 Msa0793060:CDS 30.0%
ATGATCTTCAAGATAGGTTA+GGG + chr5_3:5014760-5014779 Msa0793060:CDS 30.0%
! AAGTTGAAATTTGTTCCTAC+AGG - chr5_3:5014873-5014892 None:intergenic 30.0%
GTAGGAACAAATTTCAACTT+TGG + chr5_3:5014873-5014892 Msa0793060:CDS 30.0%
TTGTTGAGTTCATTAGAAGA+TGG - chr5_3:5014903-5014922 None:intergenic 30.0%
CTTCAAGTCAAAATTCTTCT+TGG + chr5_3:5014973-5014992 Msa0793060:CDS 30.0%
TTTGGAAAAACATTTGCAGT+AGG - chr5_3:5015113-5015132 None:intergenic 30.0%
TTATTAAATCCTATGCCACT+TGG + chr5_3:5015179-5015198 Msa0793060:CDS 30.0%
ACTTGGTACTAATTACCAAT+GGG + chr5_3:5015196-5015215 Msa0793060:CDS 30.0%
! AGAAGAATTTTCAGCATCAT+TGG - chr5_3:5015231-5015250 None:intergenic 30.0%
TGCTGAAAATTCTTCTCAAT+TGG + chr5_3:5015235-5015254 Msa0793060:CDS 30.0%
GCTGAAAATTCTTCTCAATT+GGG + chr5_3:5015236-5015255 Msa0793060:CDS 30.0%
AAATGTTAATGCAATGGAGA+TGG + chr5_3:5015358-5015377 Msa0793060:CDS 30.0%
! TTTGATGATAATGATGGTTG+TGG - chr5_3:5015406-5015425 None:intergenic 30.0%
TTGTTGAGAGAATTAGTCAT+TGG - chr5_3:5015458-5015477 None:intergenic 30.0%
!!! TCTGCTGTTTTGTAGAAATT+TGG - chr5_3:5015498-5015517 None:intergenic 30.0%
AGTGAACTCTTGTTCTTTAT+TGG - chr5_3:5015531-5015550 None:intergenic 30.0%
! AGATTTTCCATTGAAACAAG+AGG + chr5_3:5014524-5014543 Msa0793060:CDS 30.0%
ATTCTTGGATCTTTCAATCT+TGG - chr5_3:5014627-5014646 None:intergenic 30.0%
GATTGAGAGATAGAAGAATA+AGG + chr5_3:5014709-5014728 Msa0793060:CDS 30.0%
TCATAAAGTTGAATAGCTGT+TGG - chr5_3:5014744-5014763 None:intergenic 30.0%
TATGATCTTCAAGATAGGTT+AGG + chr5_3:5014759-5014778 Msa0793060:CDS 30.0%
ATGATCTTCAAGATAGGTTA+GGG + chr5_3:5014760-5014779 Msa0793060:CDS 30.0%
! AAGTTGAAATTTGTTCCTAC+AGG - chr5_3:5014873-5014892 None:intergenic 30.0%
GTAGGAACAAATTTCAACTT+TGG + chr5_3:5014873-5014892 Msa0793060:CDS 30.0%
TTGTTGAGTTCATTAGAAGA+TGG - chr5_3:5014903-5014922 None:intergenic 30.0%
CTTCAAGTCAAAATTCTTCT+TGG + chr5_3:5014973-5014992 Msa0793060:CDS 30.0%
TTTGGAAAAACATTTGCAGT+AGG - chr5_3:5015113-5015132 None:intergenic 30.0%
TTATTAAATCCTATGCCACT+TGG + chr5_3:5015179-5015198 Msa0793060:CDS 30.0%
ACTTGGTACTAATTACCAAT+GGG + chr5_3:5015196-5015215 Msa0793060:CDS 30.0%
! AGAAGAATTTTCAGCATCAT+TGG - chr5_3:5015231-5015250 None:intergenic 30.0%
TGCTGAAAATTCTTCTCAAT+TGG + chr5_3:5015235-5015254 Msa0793060:CDS 30.0%
GCTGAAAATTCTTCTCAATT+GGG + chr5_3:5015236-5015255 Msa0793060:CDS 30.0%
AAATGTTAATGCAATGGAGA+TGG + chr5_3:5015358-5015377 Msa0793060:CDS 30.0%
! TTTGATGATAATGATGGTTG+TGG - chr5_3:5015406-5015425 None:intergenic 30.0%
TTGTTGAGAGAATTAGTCAT+TGG - chr5_3:5015458-5015477 None:intergenic 30.0%
!!! TCTGCTGTTTTGTAGAAATT+TGG - chr5_3:5015498-5015517 None:intergenic 30.0%
AGTGAACTCTTGTTCTTTAT+TGG - chr5_3:5015531-5015550 None:intergenic 30.0%
! TGATGAACCTCTTGTTTCAA+TGG - chr5_3:5014534-5014553 None:intergenic 35.0%
CTTGATACTCTGACAATTCT+TGG - chr5_3:5014642-5014661 None:intergenic 35.0%
AGCAAAGTATGCACAATAAG+AGG + chr5_3:5014687-5014706 Msa0793060:CDS 35.0%
AACCTAGCAAAGTTGTTGAT+TGG + chr5_3:5014790-5014809 Msa0793060:CDS 35.0%
AACCAATCAACAACTTTGCT+AGG - chr5_3:5014795-5014814 None:intergenic 35.0%
ACAGGTGGAAAATTAGGTAA+TGG - chr5_3:5014855-5014874 None:intergenic 35.0%
! TTACCTAATTTTCCACCTGT+AGG + chr5_3:5014855-5014874 Msa0793060:CDS 35.0%
! TTGAAATTTGTTCCTACAGG+TGG - chr5_3:5014870-5014889 None:intergenic 35.0%
AGGAACAATATTCATTGGGA+AGG + chr5_3:5014945-5014964 Msa0793060:CDS 35.0%
CCAATAAATGAAGGGTGATT+TGG - chr5_3:5015158-5015177 None:intergenic 35.0%
CCAAATCACCCTTCATTTAT+TGG + chr5_3:5015155-5015174 Msa0793060:CDS 35.0%
TAATTAGTACCAAGTGGCAT+AGG - chr5_3:5015191-5015210 None:intergenic 35.0%
! CATTGGTAATTAGTACCAAG+TGG - chr5_3:5015197-5015216 None:intergenic 35.0%
CACTTGGTACTAATTACCAA+TGG + chr5_3:5015195-5015214 Msa0793060:CDS 35.0%
CTTGGTACTAATTACCAATG+GGG + chr5_3:5015197-5015216 Msa0793060:CDS 35.0%
TCTTCTCAATTGGGAAACAA+TGG + chr5_3:5015245-5015264 Msa0793060:CDS 35.0%
! GTTGATAAAGACAACATTGG+TGG - chr5_3:5015287-5015306 None:intergenic 35.0%
!! CCAGTTGATAAAGACAACAT+TGG - chr5_3:5015290-5015309 None:intergenic 35.0%
CCAATGTTGTCTTTATCAAC+TGG + chr5_3:5015287-5015306 Msa0793060:CDS 35.0%
TAGAAATTTGGCCAAACTGA+AGG - chr5_3:5015486-5015505 None:intergenic 35.0%
! TGATGAACCTCTTGTTTCAA+TGG - chr5_3:5014534-5014553 None:intergenic 35.0%
CTTGATACTCTGACAATTCT+TGG - chr5_3:5014642-5014661 None:intergenic 35.0%
AGCAAAGTATGCACAATAAG+AGG + chr5_3:5014687-5014706 Msa0793060:CDS 35.0%
AACCTAGCAAAGTTGTTGAT+TGG + chr5_3:5014790-5014809 Msa0793060:CDS 35.0%
AACCAATCAACAACTTTGCT+AGG - chr5_3:5014795-5014814 None:intergenic 35.0%
ACAGGTGGAAAATTAGGTAA+TGG - chr5_3:5014855-5014874 None:intergenic 35.0%
! TTACCTAATTTTCCACCTGT+AGG + chr5_3:5014855-5014874 Msa0793060:CDS 35.0%
! TTGAAATTTGTTCCTACAGG+TGG - chr5_3:5014870-5014889 None:intergenic 35.0%
AGGAACAATATTCATTGGGA+AGG + chr5_3:5014945-5014964 Msa0793060:CDS 35.0%
CCAATAAATGAAGGGTGATT+TGG - chr5_3:5015158-5015177 None:intergenic 35.0%
CCAAATCACCCTTCATTTAT+TGG + chr5_3:5015155-5015174 Msa0793060:CDS 35.0%
TAATTAGTACCAAGTGGCAT+AGG - chr5_3:5015191-5015210 None:intergenic 35.0%
! CATTGGTAATTAGTACCAAG+TGG - chr5_3:5015197-5015216 None:intergenic 35.0%
CACTTGGTACTAATTACCAA+TGG + chr5_3:5015195-5015214 Msa0793060:CDS 35.0%
CTTGGTACTAATTACCAATG+GGG + chr5_3:5015197-5015216 Msa0793060:CDS 35.0%
TCTTCTCAATTGGGAAACAA+TGG + chr5_3:5015245-5015264 Msa0793060:CDS 35.0%
! GTTGATAAAGACAACATTGG+TGG - chr5_3:5015287-5015306 None:intergenic 35.0%
!! CCAGTTGATAAAGACAACAT+TGG - chr5_3:5015290-5015309 None:intergenic 35.0%
CCAATGTTGTCTTTATCAAC+TGG + chr5_3:5015287-5015306 Msa0793060:CDS 35.0%
TAGAAATTTGGCCAAACTGA+AGG - chr5_3:5015486-5015505 None:intergenic 35.0%
!! GTCAGAGTATCAAGAGCTTT+TGG + chr5_3:5014648-5014667 Msa0793060:CDS 40.0%
!! AGAGTATCAAGAGCTTTTGG+TGG + chr5_3:5014651-5014670 Msa0793060:CDS 40.0%
! GGTGGAAAATTAGGTAATGG+TGG - chr5_3:5014852-5014871 None:intergenic 40.0%
GTTCCTACAGGTGGAAAATT+AGG - chr5_3:5014861-5014880 None:intergenic 40.0%
CAACAATCCATCCTTCAGTT+TGG + chr5_3:5015472-5015491 Msa0793060:CDS 40.0%
AATTTGGCCAAACTGAAGGA+TGG - chr5_3:5015482-5015501 None:intergenic 40.0%
!! GTCAGAGTATCAAGAGCTTT+TGG + chr5_3:5014648-5014667 Msa0793060:CDS 40.0%
!! AGAGTATCAAGAGCTTTTGG+TGG + chr5_3:5014651-5014670 Msa0793060:CDS 40.0%
! GGTGGAAAATTAGGTAATGG+TGG - chr5_3:5014852-5014871 None:intergenic 40.0%
GTTCCTACAGGTGGAAAATT+AGG - chr5_3:5014861-5014880 None:intergenic 40.0%
CAACAATCCATCCTTCAGTT+TGG + chr5_3:5015472-5015491 Msa0793060:CDS 40.0%
AATTTGGCCAAACTGAAGGA+TGG - chr5_3:5015482-5015501 None:intergenic 40.0%
GAAGCTAAGGAGCTTGATGA+TGG - chr5_3:5014594-5014613 None:intergenic 45.0%
GCTCCTTAGCTTCATCACAA+TGG + chr5_3:5014601-5014620 Msa0793060:CDS 45.0%
TGGCCATTGTGATGAAGCTA+AGG - chr5_3:5014607-5014626 None:intergenic 45.0%
GGTACTAATTACCAATGGGG+AGG + chr5_3:5015200-5015219 Msa0793060:CDS 45.0%
GAAGCTAAGGAGCTTGATGA+TGG - chr5_3:5014594-5014613 None:intergenic 45.0%
GCTCCTTAGCTTCATCACAA+TGG + chr5_3:5014601-5014620 Msa0793060:CDS 45.0%
TGGCCATTGTGATGAAGCTA+AGG - chr5_3:5014607-5014626 None:intergenic 45.0%
GGTACTAATTACCAATGGGG+AGG + chr5_3:5015200-5015219 Msa0793060:CDS 45.0%
!! CATTGGAAGTACCTCCCCAT+TGG - chr5_3:5015214-5015233 None:intergenic 50.0%
!! CATTGGAAGTACCTCCCCAT+TGG - chr5_3:5015214-5015233 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 5014504 5015559 5014504 ID=Msa0793060;Name=Msa0793060
chr5_3 mRNA 5014504 5015559 5014504 ID=Msa0793060-mRNA-1;Parent=Msa0793060;Name=Msa0793060-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|-1|0|1|-1|1|1|0|351
chr5_3 exon 5014504 5015559 5014504 ID=Msa0793060-mRNA-1:exon:1885;Parent=Msa0793060-mRNA-1
chr5_3 CDS 5014504 5015559 5014504 ID=Msa0793060-mRNA-1:cds;Parent=Msa0793060-mRNA-1
Gene Sequence

>Msa0793060

ATGAATAAGAATTCAAAAGAAGATTTTCCATTGAAACAAGAGGTTCATCAAAATTCAAACGATCATGAAAAAGAAAAGGCTAATTCACCATCATCAAGCTCCTTAGCTTCATCACAATGGCCAAGATTGAAAGATCCAAGAATTGTCAGAGTATCAAGAGCTTTTGGTGGAAAAGATAGACATAGCAAAGTATGCACAATAAGAGGATTGAGAGATAGAAGAATAAGGCTTTCAGTACCAACAGCTATTCAACTTTATGATCTTCAAGATAGGTTAGGGCTTAATCAACCTAGCAAAGTTGTTGATTGGTTGCTCAATGCAGCTAAACATGACATTGATCAACTTCCACCATTACCTAATTTTCCACCTGTAGGAACAAATTTCAACTTTGGTTTTCCATCTTCTAATGAACTCAACAATCAACAATTGTTCAATTTCAATAGGAACAATATTCATTGGGAAGGTTCAACTTCAAGTCAAAATTCTTCTTGGAAATCAAACCCTAAAGAAGTTTCAAGAGAATTGGTTAATGATAAACCAAATTACTTGATGAATAGTACTCAAGAAGATGAAAATATTAACAAGCAAGGAAGCAATATTGAAGTTCCTACTGCAAATGTTTTTCCAAATAATAACAATATGTTACAAAGACCAAATCACCCTTCATTTATTGGTTTATTAAATCCTATGCCACTTGGTACTAATTACCAATGGGGAGGTACTTCCAATGATGCTGAAAATTCTTCTCAATTGGGAAACAATGGCTTTATTACATCTTTGCCACCAATGTTGTCTTTATCAACTGGAAATTCTTCTCAAATGATGTTAGGAACAACACAATCATATTTTTCTTCAAATGTTAATGCAATGGAGATGGATCATCATCATCAAAGAGAAATCCACAACCATCATTATCATCAAATGTTGAGTTCATCAAGTTCTTCTCAGAATCCAATGACTAATTCTCTCAACAATCCATCCTTCAGTTTGGCCAAATTTCTACAAAACAGCAGAGAAAATTCATCCAATAAAGAACAAGAGTTCACTACAAAGTGA

Protein sequence

>Msa0793060

MNKNSKEDFPLKQEVHQNSNDHEKEKANSPSSSSLASSQWPRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHDIDQLPPLPNFPPVGTNFNFGFPSSNELNNQQLFNFNRNNIHWEGSTSSQNSSWKSNPKEVSRELVNDKPNYLMNSTQEDENINKQGSNIEVPTANVFPNNNNMLQRPNHPSFIGLLNPMPLGTNYQWGGTSNDAENSSQLGNNGFITSLPPMLSLSTGNSSQMMLGTTQSYFSSNVNAMEMDHHHQREIHNHHYHQMLSSSSSSQNPMTNSLNNPSFSLAKFLQNSRENSSNKEQEFTTK*