Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613150 | XP_003608194.2 | 98.346 | 544 | 9 | 0 | 1 | 544 | 1 | 544 | 0.0 | 1108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613150 | sp|Q8GWA1|NDA1_ARATH | 68.980 | 490 | 150 | 1 | 54 | 543 | 23 | 510 | 0.0 | 691 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011050 | Msa0613150 | 0.826358 | 2.834190e-54 | -8.615850e-47 |
| Msa0051960 | Msa0613150 | 0.800702 | 1.273071e-48 | -8.615850e-47 |
| Msa0059900 | Msa0613150 | 0.823319 | 1.476699e-53 | -8.615850e-47 |
| Msa0061220 | Msa0613150 | 0.810769 | 9.778374e-51 | -8.615850e-47 |
| Msa0090090 | Msa0613150 | 0.806358 | 8.552223e-50 | -8.615850e-47 |
| Msa0092410 | Msa0613150 | 0.801829 | 7.487385e-49 | -8.615850e-47 |
| Msa0094710 | Msa0613150 | 0.812352 | 4.427705e-51 | -8.615850e-47 |
| Msa0101960 | Msa0613150 | 0.805086 | 1.581944e-49 | -8.615850e-47 |
| Msa0613150 | Msa0614380 | 0.831818 | 1.345492e-55 | -8.615850e-47 |
| Msa0613150 | Msa0635270 | 0.806449 | 8.182302e-50 | -8.615850e-47 |
| Msa0613150 | Msa0641130 | 0.829267 | 5.663918e-55 | -8.615850e-47 |
| Msa0613150 | Msa0685240 | 0.808666 | 2.768174e-50 | -8.615850e-47 |
| Msa0613150 | Msa0696100 | 0.948167 | 1.611638e-106 | -8.615850e-47 |
| Msa0613150 | Msa0697590 | 0.825833 | 3.777820e-54 | -8.615850e-47 |
| Msa0613150 | Msa0743870 | 0.816964 | 4.214167e-52 | -8.615850e-47 |
| Msa0613150 | Msa0758850 | 0.803469 | 3.434460e-49 | -8.615850e-47 |
| Msa0613150 | Msa0764070 | 0.802567 | 5.277864e-49 | -8.615850e-47 |
| Msa0613150 | Msa0787790 | 0.859426 | 4.170085e-63 | -8.615850e-47 |
| Msa0613150 | Msa0843700 | 0.803319 | 3.689943e-49 | -8.615850e-47 |
| Msa0613150 | Msa0852790 | 0.815853 | 7.471160e-52 | -8.615850e-47 |
| Msa0613150 | Msa0862620 | 0.804266 | 2.345836e-49 | -8.615850e-47 |
| Msa0613150 | Msa0863720 | 0.808988 | 2.363018e-50 | -8.615850e-47 |
| Msa0613150 | Msa0863990 | 0.818630 | 1.773517e-52 | -8.615850e-47 |
| Msa0613150 | Msa0929290 | 0.898812 | 3.676358e-77 | -8.615850e-47 |
| Msa0613150 | Msa0945130 | 0.800375 | 1.484375e-48 | -8.615850e-47 |
| Msa0613150 | Msa0968050 | 0.830681 | 2.560890e-55 | -8.615850e-47 |
| Msa0613150 | Msa1011250 | 0.811838 | 5.729391e-51 | -8.615850e-47 |
| Msa0613150 | Msa1031460 | 0.821710 | 3.492666e-53 | -8.615850e-47 |
| Msa0613150 | Msa1043120 | 0.815584 | 8.576789e-52 | -8.615850e-47 |
| Msa0613150 | Msa1059670 | 0.809948 | 1.470383e-50 | -8.615850e-47 |
| Msa0613150 | Msa1069890 | 0.815879 | 7.373043e-52 | -8.615850e-47 |
| Msa0613150 | Msa1070540 | 0.825159 | 5.456404e-54 | -8.615850e-47 |
| Msa0613150 | Msa1089190 | 0.825644 | 4.189262e-54 | -8.615850e-47 |
| Msa0613150 | Msa1101240 | 0.825569 | 4.363095e-54 | -8.615850e-47 |
| Msa0613150 | Msa1131790 | 0.806407 | 8.351833e-50 | -8.615850e-47 |
| Msa0613150 | Msa1208990 | 0.814748 | 1.315418e-51 | -8.615850e-47 |
| Msa0613150 | Msa1212050 | 0.800321 | 1.522786e-48 | -8.615850e-47 |
| Msa0613150 | Msa1212130 | 0.815653 | 8.280562e-52 | -8.615850e-47 |
| Msa0613150 | Msa1214170 | 0.838810 | 2.305325e-57 | -8.615850e-47 |
| Msa0613150 | Msa1225580 | 0.829629 | 4.625989e-55 | -8.615850e-47 |
| Msa0613150 | Msa1236440 | 0.801610 | 8.301218e-49 | -8.615850e-47 |
| Msa0613150 | Msa1246780 | 0.807051 | 6.103765e-50 | -8.615850e-47 |
| Msa0613150 | Msa1246790 | 0.817037 | 4.059517e-52 | -8.615850e-47 |
| Msa0613150 | Msa1256060 | 0.816081 | 6.645128e-52 | -8.615850e-47 |
| Msa0613150 | Msa1259860 | 0.812703 | 3.710050e-51 | -8.615850e-47 |
| Msa0613150 | Msa1260680 | 0.821146 | 4.714582e-53 | -8.615850e-47 |
| Msa0613150 | Msa1277670 | 0.806310 | 8.753258e-50 | -8.615850e-47 |
| Msa0613150 | Msa1286210 | 0.811921 | 5.496261e-51 | -8.615850e-47 |
| Msa0613150 | Msa1355510 | 0.835284 | 1.835258e-56 | -8.615850e-47 |
| Msa0613150 | Msa1360020 | 0.831109 | 2.010987e-55 | -8.615850e-47 |
| Msa0613150 | Msa1364080 | 0.822546 | 2.235504e-53 | -8.615850e-47 |
| Msa0613150 | Msa1367530 | 0.807134 | 5.863354e-50 | -8.615850e-47 |
| Msa0613150 | Msa1386890 | 0.815357 | 9.636882e-52 | -8.615850e-47 |
| Msa0613150 | Msa1390290 | 0.802916 | 4.470916e-49 | -8.615850e-47 |
| Msa0613150 | Msa1397390 | 0.811435 | 7.011052e-51 | -8.615850e-47 |
| Msa0613150 | Msa1407880 | 0.823061 | 1.695943e-53 | -8.615850e-47 |
| Msa0613150 | Msa1433410 | 0.801944 | 7.088722e-49 | -8.615850e-47 |
| Msa0613150 | Msa1447880 | 0.802663 | 5.041147e-49 | -8.615850e-47 |
| Msa0136630 | Msa0613150 | 0.804535 | 2.062092e-49 | -8.615850e-47 |
| Msa0151220 | Msa0613150 | 0.805273 | 1.445600e-49 | -8.615850e-47 |
| Msa0176260 | Msa0613150 | 0.801434 | 9.021894e-49 | -8.615850e-47 |
| Msa0187310 | Msa0613150 | 0.803159 | 3.982876e-49 | -8.615850e-47 |
| Msa0224130 | Msa0613150 | 0.823134 | 1.631432e-53 | -8.615850e-47 |
| Msa0380600 | Msa0613150 | 0.805840 | 1.099286e-49 | -8.615850e-47 |
| Msa0386010 | Msa0613150 | 0.801334 | 9.456907e-49 | -8.615850e-47 |
| Msa0389900 | Msa0613150 | 0.822416 | 2.397377e-53 | -8.615850e-47 |
| Msa0408340 | Msa0613150 | 0.812583 | 3.941154e-51 | -8.615850e-47 |
| Msa0430240 | Msa0613150 | 0.809589 | 1.756094e-50 | -8.615850e-47 |
| Msa0257910 | Msa0613150 | 0.803645 | 3.157840e-49 | -8.615850e-47 |
| Msa0259440 | Msa0613150 | 0.817373 | 3.411437e-52 | -8.615850e-47 |
| Msa0260520 | Msa0613150 | 0.805293 | 1.431774e-49 | -8.615850e-47 |
| Msa0264680 | Msa0613150 | 0.833962 | 3.944958e-56 | -8.615850e-47 |
| Msa0265270 | Msa0613150 | 0.819555 | 1.091916e-52 | -8.615850e-47 |
| Msa0271540 | Msa0613150 | 0.800438 | 1.441011e-48 | -8.615850e-47 |
| Msa0276430 | Msa0613150 | 0.811293 | 7.528373e-51 | -8.615850e-47 |
| Msa0277410 | Msa0613150 | 0.800623 | 1.321516e-48 | -8.615850e-47 |
| Msa0296910 | Msa0613150 | 0.802836 | 4.643855e-49 | -8.615850e-47 |
| Msa0302730 | Msa0613150 | 0.833240 | 5.974057e-56 | -8.615850e-47 |
| Msa0335070 | Msa0613150 | 0.802892 | 4.522169e-49 | -8.615850e-47 |
| Msa0484800 | Msa0613150 | 0.814562 | 1.446059e-51 | -8.615850e-47 |
| Msa0501410 | Msa0613150 | 0.800949 | 1.133464e-48 | -8.615850e-47 |
| Msa0504100 | Msa0613150 | 0.802546 | 5.329532e-49 | -8.615850e-47 |
| Msa0524330 | Msa0613150 | 0.811479 | 6.859563e-51 | -8.615850e-47 |
| Msa0524440 | Msa0613150 | 0.810749 | 9.874108e-51 | -8.615850e-47 |
| Msa0545050 | Msa0613150 | 0.817847 | 2.666369e-52 | -8.615850e-47 |
| Msa0558390 | Msa0613150 | 0.935772 | 5.009721e-97 | -8.615850e-47 |
| Msa0588710 | Msa0613150 | 0.803744 | 3.011821e-49 | -8.615850e-47 |
| Msa0590390 | Msa0613150 | 0.801791 | 7.622263e-49 | -8.615850e-47 |
| Msa0600590 | Msa0613150 | 0.821759 | 3.403014e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613150 | MtrunA17_Chr4g0048041 | 98.346 | 544 | 9 | 0 | 1 | 544 | 1 | 544 | 0.0 | 1108 |
| Msa0613150 | MtrunA17_Chr5g0430321 | 75.885 | 452 | 109 | 0 | 92 | 543 | 50 | 501 | 0.0 | 723 |
| Msa0613150 | MtrunA17_Chr3g0105191 | 68.548 | 496 | 150 | 3 | 54 | 543 | 9 | 504 | 0.0 | 685 |
| Msa0613150 | MtrunA17_Chr4g0048381 | 38.611 | 360 | 200 | 9 | 105 | 449 | 51 | 404 | 6.00e-72 | 240 |
| Msa0613150 | MtrunA17_Chr4g0048381 | 34.167 | 120 | 70 | 3 | 428 | 543 | 464 | 578 | 2.50e-12 | 69.3 |
| Msa0613150 | MtrunA17_Chr2g0281111 | 39.595 | 346 | 193 | 8 | 105 | 440 | 51 | 390 | 1.15e-71 | 239 |
| Msa0613150 | MtrunA17_Chr2g0281111 | 36.667 | 120 | 67 | 3 | 428 | 543 | 464 | 578 | 2.25e-14 | 75.9 |
| Msa0613150 | MtrunA17_Chr4g0022591 | 36.579 | 380 | 220 | 9 | 81 | 449 | 37 | 406 | 3.43e-67 | 227 |
| Msa0613150 | MtrunA17_Chr4g0022591 | 36.667 | 120 | 67 | 3 | 428 | 543 | 463 | 577 | 2.14e-15 | 79.3 |
| Msa0613150 | MtrunA17_Chr4g0022601 | 35.150 | 367 | 200 | 10 | 105 | 455 | 44 | 388 | 2.05e-64 | 220 |
| Msa0613150 | MtrunA17_Chr4g0022601 | 35.000 | 120 | 69 | 3 | 428 | 543 | 455 | 569 | 7.38e-13 | 71.2 |
| Msa0613150 | MtrunA17_Chr8g0384841 | 24.086 | 465 | 280 | 16 | 105 | 532 | 84 | 512 | 1.41e-13 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613150 | AT1G07180.1 | 68.980 | 490 | 150 | 1 | 54 | 543 | 23 | 510 | 0.0 | 691 |
| Msa0613150 | AT2G29990.1 | 72.848 | 453 | 123 | 0 | 91 | 543 | 56 | 508 | 0.0 | 688 |
| Msa0613150 | AT4G21490.1 | 35.765 | 425 | 226 | 11 | 46 | 455 | 3 | 395 | 3.82e-66 | 225 |
| Msa0613150 | AT4G21490.1 | 32.231 | 121 | 73 | 3 | 427 | 543 | 465 | 580 | 1.23e-11 | 67.8 |
| Msa0613150 | AT4G21490.2 | 35.765 | 425 | 225 | 11 | 46 | 455 | 3 | 394 | 6.48e-66 | 224 |
| Msa0613150 | AT4G21490.2 | 32.231 | 121 | 73 | 3 | 427 | 543 | 464 | 579 | 1.25e-11 | 67.8 |
| Msa0613150 | AT4G28220.2 | 38.576 | 337 | 188 | 9 | 109 | 434 | 52 | 380 | 1.39e-65 | 222 |
| Msa0613150 | AT4G28220.1 | 38.576 | 337 | 188 | 9 | 109 | 434 | 52 | 380 | 3.27e-65 | 222 |
| Msa0613150 | AT4G28220.1 | 36.667 | 120 | 67 | 3 | 428 | 543 | 457 | 571 | 2.90e-13 | 72.8 |
| Msa0613150 | AT4G05020.1 | 41.745 | 321 | 175 | 7 | 105 | 417 | 57 | 373 | 1.35e-63 | 218 |
| Msa0613150 | AT4G05020.1 | 32.500 | 120 | 72 | 3 | 428 | 543 | 468 | 582 | 3.05e-11 | 66.6 |
| Msa0613150 | AT4G05020.2 | 41.745 | 321 | 175 | 7 | 105 | 417 | 57 | 373 | 3.49e-63 | 218 |
| Msa0613150 | AT2G20800.1 | 36.193 | 373 | 200 | 8 | 103 | 461 | 60 | 408 | 9.30e-57 | 200 |
| Msa0613150 | AT2G20800.1 | 37.500 | 120 | 66 | 3 | 428 | 543 | 468 | 582 | 1.44e-14 | 77.0 |
| Msa0613150 | AT5G08740.1 | 24.861 | 539 | 302 | 22 | 33 | 530 | 20 | 496 | 2.20e-19 | 92.0 |
Find 133 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAGAGTTGTTCAACAAAAT+TGG | 0.171502 | 4_2:-61785058 | Msa0613150:CDS |
| GTTGTTCTGTTCCTTAATTC+TGG | 0.179951 | 4_2:+61787113 | None:intergenic |
| TCTATAACTCTTTGTGTGTT+AGG | 0.192700 | 4_2:+61787042 | None:intergenic |
| GCTGCTTGTCGGTTTCTTAA+AGG | 0.225722 | 4_2:-61786916 | Msa0613150:CDS |
| CAGCAGGATAGGTTGAATTT+TGG | 0.230901 | 4_2:-61784625 | Msa0613150:exon |
| CATCACTCAAAACTATCTTT+TGG | 0.254195 | 4_2:+61785740 | None:intergenic |
| TAGATCAACAAGTGCCTTAT+AGG | 0.262816 | 4_2:+61784940 | None:intergenic |
| AGAAGATCAGGTGTTGCTTT+TGG | 0.283784 | 4_2:-61787231 | Msa0613150:CDS |
| CCCTTGATACCAAAAGTTAA+AGG | 0.285822 | 4_2:+61786439 | None:intergenic |
| TTTCAGAAAGCATCAGATTA+AGG | 0.287447 | 4_2:+61786350 | None:intergenic |
| GTGTTGGTACCCTTGAATTC+AGG | 0.309821 | 4_2:-61786813 | Msa0613150:CDS |
| GGAGCTGAGCCTTTAACTTT+TGG | 0.313907 | 4_2:-61786448 | Msa0613150:CDS |
| TTCCTTATGGTCTCTTGGTT+TGG | 0.321151 | 4_2:-61785708 | Msa0613150:CDS |
| GGTCTCTTGGTTTGGTCCAC+AGG | 0.327590 | 4_2:-61785700 | Msa0613150:CDS |
| TTCGTATATTTCCAGAATTA+AGG | 0.335626 | 4_2:-61787124 | Msa0613150:CDS |
| CTGCTTGTCGGTTTCTTAAA+GGG | 0.336052 | 4_2:-61786915 | Msa0613150:CDS |
| TGTATCATGCTCAAGAAATA+AGG | 0.343406 | 4_2:-61786384 | Msa0613150:CDS |
| GCAAAGGGATTGTCACTTGC+TGG | 0.349729 | 4_2:-61784762 | Msa0613150:CDS |
| TAGAGTTGTTCAACAAAATT+GGG | 0.356038 | 4_2:-61785057 | Msa0613150:CDS |
| ACAATTTGTGTATAAACATA+TGG | 0.358161 | 4_2:-61784984 | Msa0613150:CDS |
| CTGCTGCATTGTGTAGTTAT+TGG | 0.365839 | 4_2:-61786173 | Msa0613150:CDS |
| CTATAACTCTTTGTGTGTTA+GGG | 0.367616 | 4_2:+61787043 | None:intergenic |
| TGTCATATGCAACTTTGAAT+TGG | 0.368204 | 4_2:+61786488 | None:intergenic |
| GGCATCAGTAGGTGCCTATA+AGG | 0.371076 | 4_2:-61784954 | Msa0613150:CDS |
| ATTCTGGAAATATACGAAAA+TGG | 0.382739 | 4_2:+61787129 | None:intergenic |
| TTCTTTCTAGCTTCCTGCAC+TGG | 0.393614 | 4_2:-61786730 | Msa0613150:CDS |
| TGAAGTTCCTTATGGTCTCT+TGG | 0.393992 | 4_2:-61785713 | Msa0613150:CDS |
| ATCTTACACGTGTGCTGAGC+TGG | 0.396198 | 4_2:-61784707 | Msa0613150:CDS |
| GTCTGGAGTTTGTCTTATGC+GGG | 0.399394 | 4_2:-61785785 | Msa0613150:CDS |
| ATGGGAAGGTAAGGAGCCTT+TGG | 0.400415 | 4_2:+61787161 | None:intergenic |
| GTGTGCTGAGCTGGAGGAAT+AGG | 0.406321 | 4_2:-61784698 | Msa0613150:CDS |
| GTACCGGTTGGGCTGCTTGT+CGG | 0.407943 | 4_2:-61786927 | Msa0613150:CDS |
| TTTGCACTTGGGGATTGTGC+TGG | 0.420564 | 4_2:-61785478 | Msa0613150:CDS |
| TTGGTTTGGTCCACAGGAGT+TGG | 0.429676 | 4_2:-61785694 | Msa0613150:CDS |
| TCCTTACCTTCCCATGTAGA+TGG | 0.433038 | 4_2:-61787153 | Msa0613150:CDS |
| CTGAATCTTCCAAGCTCTCC+AGG | 0.437706 | 4_2:-61785649 | Msa0613150:CDS |
| GTGGAAGATGTCTTTGCACT+TGG | 0.442231 | 4_2:-61785490 | Msa0613150:CDS |
| GATGGAACTGAAGTTCCTTA+TGG | 0.446289 | 4_2:-61785721 | Msa0613150:CDS |
| AACAAAATTGGGAAACAGAA+TGG | 0.446795 | 4_2:-61785046 | Msa0613150:CDS |
| TACCTTCCACCTGGAGAGCT+TGG | 0.449786 | 4_2:+61785640 | None:intergenic |
| CAGCAACAGACCTGAATTCA+AGG | 0.450864 | 4_2:+61786803 | None:intergenic |
| TGATACAGAATTGGTGTTGA+TGG | 0.451085 | 4_2:-61785532 | Msa0613150:intron |
| AGTTCCTGTTATTCCCCTCT+TGG | 0.451235 | 4_2:+61787080 | None:intergenic |
| TCTAGTCCTGCATATCTTGT+CGG | 0.452195 | 4_2:+61786991 | None:intergenic |
| AGAGTGGTTGTTCTCGGTAC+CGG | 0.453887 | 4_2:-61786943 | Msa0613150:CDS |
| ACGAAAATGGTCCATCTACA+TGG | 0.454099 | 4_2:+61787142 | None:intergenic |
| GGTTGTTCTCGGTACCGGTT+GGG | 0.456139 | 4_2:-61786938 | Msa0613150:CDS |
| AGCTAGAAAGAAGTATGAGT+TGG | 0.457476 | 4_2:+61786741 | None:intergenic |
| TGGAAGATGTCTTTGCACTT+GGG | 0.463774 | 4_2:-61785489 | Msa0613150:CDS |
| GTTATTGGAGGTGGTCCTAC+AGG | 0.464952 | 4_2:-61786158 | Msa0613150:CDS |
| TGAGCTAAAGCTGGAAGCAC+TGG | 0.467552 | 4_2:+61785433 | None:intergenic |
| CATATCACCAAGGAATCATA+TGG | 0.470079 | 4_2:-61786863 | Msa0613150:CDS |
| AAACCGACAAGCAGCCCAAC+CGG | 0.471084 | 4_2:+61786924 | None:intergenic |
| AGAAGCAACCTGAGAAGATC+AGG | 0.472613 | 4_2:-61787243 | Msa0613150:CDS |
| GCATCCTGTATTCTACCAAC+AGG | 0.478437 | 4_2:+61786778 | None:intergenic |
| GTGAAAACCATATGATTCCT+TGG | 0.479965 | 4_2:+61786856 | None:intergenic |
| AGTGCTTCCAGCTTTAGCTC+AGG | 0.480412 | 4_2:-61785431 | Msa0613150:intron |
| AAGCAACACCTGATCTTCTC+AGG | 0.480533 | 4_2:+61787235 | None:intergenic |
| TCTGCAGATGGCATCACACT+TGG | 0.481006 | 4_2:-61785010 | Msa0613150:CDS |
| GACAAGCTTGTAATTGCAGC+TGG | 0.484313 | 4_2:-61786469 | Msa0613150:CDS |
| TAACACACAAAGAGTTATAG+AGG | 0.487725 | 4_2:-61787040 | Msa0613150:CDS |
| AAGCCTAGAGTGGTTGTTCT+CGG | 0.488864 | 4_2:-61786949 | Msa0613150:CDS |
| GACCAAACCAAGAGACCATA+AGG | 0.496146 | 4_2:+61785706 | None:intergenic |
| TATGCAACTTTGAATTGGTA+AGG | 0.497896 | 4_2:+61786493 | None:intergenic |
| TGGTTGTTCTCGGTACCGGT+TGG | 0.498770 | 4_2:-61786939 | Msa0613150:CDS |
| CAATTTGTGTATAAACATAT+GGG | 0.504254 | 4_2:-61784983 | Msa0613150:CDS |
| GGAAGATGTCTTTGCACTTG+GGG | 0.505360 | 4_2:-61785488 | Msa0613150:CDS |
| GTTTGTGTCAACTCCAGTGC+AGG | 0.507620 | 4_2:+61786717 | None:intergenic |
| TCTTATGCGGGGTGTGGTGA+AGG | 0.508837 | 4_2:-61785773 | Msa0613150:CDS |
| CTGCATTGTGTAGTTATTGG+AGG | 0.508933 | 4_2:-61786170 | Msa0613150:CDS |
| AGGCTAACCTGAGCTAAAGC+TGG | 0.509934 | 4_2:+61785424 | None:intergenic |
| GCTAGAAAGAAGTATGAGTT+GGG | 0.516821 | 4_2:+61786742 | None:intergenic |
| CCTACAGGAGTGGAATTTAG+TGG | 0.520988 | 4_2:-61786143 | Msa0613150:CDS |
| CTCTTTAGATAATCCACCAT+TGG | 0.522845 | 4_2:+61786516 | None:intergenic |
| TCCATCTACATGGGAAGGTA+AGG | 0.529367 | 4_2:+61787152 | None:intergenic |
| CATTCATGTCACACTCATTG+AGG | 0.529894 | 4_2:-61786060 | Msa0613150:intron |
| ATACTTTCATCCTTTGACGT+TGG | 0.533948 | 4_2:-61785930 | Msa0613150:CDS |
| CATTGTGTAGTTATTGGAGG+TGG | 0.534574 | 4_2:-61786167 | Msa0613150:CDS |
| AGTCTGGAGTTTGTCTTATG+CGG | 0.535341 | 4_2:-61785786 | Msa0613150:CDS |
| CTGTCGAAGGCCAACGTCAA+AGG | 0.536614 | 4_2:+61785920 | None:intergenic |
| TGGAAGTAATGTACATGAGA+AGG | 0.538179 | 4_2:-61787211 | Msa0613150:CDS |
| TTTGTGTGTTAGGGAGCTGA+TGG | 0.540218 | 4_2:+61787052 | None:intergenic |
| TCTTTGGCAGAGACAACAGC+AGG | 0.541549 | 4_2:-61784641 | Msa0613150:CDS |
| ATAAGGCACTTGTTGATCTA+CGG | 0.542831 | 4_2:-61784937 | Msa0613150:CDS |
| GGCAGAGACAACAGCAGGAT+AGG | 0.543946 | 4_2:-61784636 | Msa0613150:CDS |
| CCACTAAATTCCACTCCTGT+AGG | 0.546000 | 4_2:+61786143 | None:intergenic |
| GGACTAGAGGCAACAAAACC+AGG | 0.554285 | 4_2:-61786976 | Msa0613150:CDS |
| GTCTCTGCCAAAGACAAAAG+TGG | 0.556692 | 4_2:+61784650 | None:intergenic |
| GATGATCCGACAAGATATGC+AGG | 0.562686 | 4_2:-61786997 | Msa0613150:CDS |
| AGGTCTGTTGCTGAGCCTGT+TGG | 0.569427 | 4_2:-61786793 | Msa0613150:CDS |
| ACAGAATTGGTGTTGATGGA+TGG | 0.570983 | 4_2:-61785528 | Msa0613150:intron |
| GTACCGAGAACAACCACTCT+AGG | 0.573776 | 4_2:+61786946 | None:intergenic |
| GGAAAGGCTTTGTCTGCAGA+TGG | 0.574116 | 4_2:-61785022 | Msa0613150:CDS |
| TCTTATGTTATAGGATGCAA+AGG | 0.575813 | 4_2:-61784778 | Msa0613150:intron |
| AATGGTCCATCTACATGGGA+AGG | 0.577054 | 4_2:+61787147 | None:intergenic |
| TTGTTGGCTTCAACATGTGT+TGG | 0.577991 | 4_2:-61786829 | Msa0613150:CDS |
| CTGATGCTTTCTGAAAATCC+AGG | 0.580189 | 4_2:-61786343 | Msa0613150:intron |
| TGCGAGGCAGTTACCAATGG+TGG | 0.582363 | 4_2:-61786529 | Msa0613150:CDS |
| GAGAGAACATTTACATCCAA+AGG | 0.583362 | 4_2:-61787177 | Msa0613150:CDS |
| TGAGCCTGTTGGTAGAATAC+AGG | 0.585959 | 4_2:-61786782 | Msa0613150:CDS |
| GGCTTCACATACCTTCCACC+TGG | 0.586382 | 4_2:+61785631 | None:intergenic |
| TTCCAAGCTCTCCAGGTGGA+AGG | 0.587295 | 4_2:-61785642 | Msa0613150:intron |
| AGTTTGTCTTATGCGGGGTG+TGG | 0.589261 | 4_2:-61785779 | Msa0613150:CDS |
| TACTGCGAGGCAGTTACCAA+TGG | 0.597374 | 4_2:-61786532 | Msa0613150:CDS |
| CTTATGTTATAGGATGCAAA+GGG | 0.602916 | 4_2:-61784777 | Msa0613150:intron |
| TGTTGATCTACGGCAATCCA+AGG | 0.602932 | 4_2:-61784927 | Msa0613150:intron |
| TGGGAAACAGAATGGAGGAA+AGG | 0.603382 | 4_2:-61785038 | Msa0613150:CDS |
| ATGGGGAGCATGGCATCAGT+AGG | 0.604143 | 4_2:-61784965 | Msa0613150:CDS |
| GTATAAACATATGGGGAGCA+TGG | 0.604718 | 4_2:-61784975 | Msa0613150:CDS |
| AATACAGGATGCACTAGCAA+AGG | 0.606941 | 4_2:-61786767 | Msa0613150:CDS |
| TGACAGGTTGCTGAAAGACA+AGG | 0.609023 | 4_2:-61785091 | Msa0613150:intron |
| ATGGATGCGTGTTCCGTCTG+TGG | 0.610196 | 4_2:-61785509 | Msa0613150:CDS |
| CTATAACAATGGCATTAGCA+AGG | 0.610697 | 4_2:-61787272 | None:intergenic |
| CTCAGAGGGACCAACTCCTG+TGG | 0.615481 | 4_2:+61785684 | None:intergenic |
| CGAAAATGGTCCATCTACAT+GGG | 0.615536 | 4_2:+61787143 | None:intergenic |
| TATGCGGGGTGTGGTGAAGG+AGG | 0.616063 | 4_2:-61785770 | Msa0613150:CDS |
| GACAAGATATGCAGGACTAG+AGG | 0.619013 | 4_2:-61786989 | Msa0613150:CDS |
| TGGAGGTGGTCCTACAGGAG+TGG | 0.621881 | 4_2:-61786153 | Msa0613150:CDS |
| GCTTCGTTGCATACTGTCGA+AGG | 0.629576 | 4_2:+61785907 | None:intergenic |
| GCAAAGACATCTTCCACAGA+CGG | 0.636642 | 4_2:+61785496 | None:intergenic |
| TTACACGTGTGCTGAGCTGG+AGG | 0.642106 | 4_2:-61784704 | Msa0613150:CDS |
| TCTGGAGTTTGTCTTATGCG+GGG | 0.644473 | 4_2:-61785784 | Msa0613150:CDS |
| AGCAACAGACCTGAATTCAA+GGG | 0.646467 | 4_2:+61786804 | None:intergenic |
| ACCAGGTGAAAAGCCTAGAG+TGG | 0.649954 | 4_2:-61786959 | Msa0613150:CDS |
| GACAGGTTGCTGAAAGACAA+GGG | 0.656094 | 4_2:-61785090 | Msa0613150:intron |
| ACACATGTTGAAGCCAACAA+AGG | 0.657554 | 4_2:+61786832 | None:intergenic |
| AAAATTGGGAAACAGAATGG+AGG | 0.666719 | 4_2:-61785043 | Msa0613150:CDS |
| AATTTGTGTATAAACATATG+GGG | 0.676076 | 4_2:-61784982 | Msa0613150:CDS |
| TGCAACGAAGCACTTAACAA+AGG | 0.676652 | 4_2:-61785895 | Msa0613150:intron |
| AATCTTCCAAGCTCTCCAGG+TGG | 0.690106 | 4_2:-61785646 | Msa0613150:CDS |
| CAGCACACGTGTAAGATATG+CGG | 0.691917 | 4_2:+61784713 | None:intergenic |
| ATGTCAACAGGTCTACTGCG+AGG | 0.733020 | 4_2:-61786545 | Msa0613150:intron |
| ATGTTGTGTGCATATCACCA+AGG | 0.767641 | 4_2:-61786873 | Msa0613150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACATTTTAAATTTTAATATC+TGG | + | chr4_2:61786209-61786228 | None:intergenic | 10.0% |
| !!! | ATTTGTTATAATAATTATGC+AGG | - | chr4_2:61785536-61785555 | Msa0613150:intron | 15.0% |
| !!! | GTATAGTTTTTCTAAAAGAA+GGG | + | chr4_2:61785151-61785170 | None:intergenic | 20.0% |
| !!! | AGTATAGTTTTTCTAAAAGA+AGG | + | chr4_2:61785152-61785171 | None:intergenic | 20.0% |
| !!! | AAAATGTTTTTCATTATGAC+AGG | - | chr4_2:61785595-61785614 | Msa0613150:intron | 20.0% |
| !! | AATTATGAAAAGTTAAACAG+TGG | + | chr4_2:61785855-61785874 | None:intergenic | 20.0% |
| !!! | CTGTTTAACTTTTCATAATT+AGG | - | chr4_2:61785855-61785874 | Msa0613150:intron | 20.0% |
| !!! | TCTATTGGAATTTTTTACAT+TGG | + | chr4_2:61786515-61786534 | None:intergenic | 20.0% |
| !! | AATGTAAAAAATTCCAATAG+AGG | - | chr4_2:61786514-61786533 | Msa0613150:CDS | 20.0% |
| !! | ATGTAAAAAATTCCAATAGA+GGG | - | chr4_2:61786515-61786534 | Msa0613150:CDS | 20.0% |
| !! | AACTTCTATTTCATTCTATT+TGG | - | chr4_2:61786624-61786643 | Msa0613150:intron | 20.0% |
| !! | ACAATTTGTGTATAAACATA+TGG | - | chr4_2:61786832-61786851 | Msa0613150:CDS | 20.0% |
| !! | CAATTTGTGTATAAACATAT+GGG | - | chr4_2:61786833-61786852 | Msa0613150:CDS | 20.0% |
| !! | AATTTGTGTATAAACATATG+GGG | - | chr4_2:61786834-61786853 | Msa0613150:CDS | 20.0% |
| !! | CAAAATGTATCTTATGTTAT+AGG | - | chr4_2:61787029-61787048 | Msa0613150:CDS | 20.0% |
| !! | ATTCTGGAAATATACGAAAA+TGG | + | chr4_2:61784690-61784709 | None:intergenic | 25.0% |
| ! | TTCGTATATTTCCAGAATTA+AGG | - | chr4_2:61784692-61784711 | Msa0613150:CDS | 25.0% |
| ! | GAAAAACTATACTGTTACAA+TGG | - | chr4_2:61785159-61785178 | Msa0613150:intron | 25.0% |
| ! | GCTTAAAACTAAACTAAGTA+TGG | + | chr4_2:61785513-61785532 | None:intergenic | 25.0% |
| ! | TGTTATAATAATTATGCAGG+TGG | - | chr4_2:61785539-61785558 | Msa0613150:intron | 25.0% |
| ! | GTTATAATAATTATGCAGGT+GGG | - | chr4_2:61785540-61785559 | Msa0613150:intron | 25.0% |
| !!! | GTCATTATTTTTTTTGCCAA+AGG | - | chr4_2:61785564-61785583 | Msa0613150:intron | 25.0% |
| !! | ATTCAATTTTTGTATCAGTC+TGG | - | chr4_2:61786014-61786033 | Msa0613150:intron | 25.0% |
| !! | ATCACTCAAAACTATCTTTT+GGG | + | chr4_2:61786078-61786097 | None:intergenic | 25.0% |
| ! | ACAAAACATCATAGACAATA+AGG | + | chr4_2:61786415-61786434 | None:intergenic | 25.0% |
| ! | AAGACAATATGGATAAATGT+CGG | + | chr4_2:61786487-61786506 | None:intergenic | 25.0% |
| ! | CATTGGATTAAAAGACAATA+TGG | + | chr4_2:61786498-61786517 | None:intergenic | 25.0% |
| ! | ATTAATATGCATTACTTGAC+AGG | - | chr4_2:61786544-61786563 | Msa0613150:intron | 25.0% |
| ! | TAGAGTTGTTCAACAAAATT+GGG | - | chr4_2:61786759-61786778 | Msa0613150:CDS | 25.0% |
| !!! | TCAAAAATGGATTGATTTTG+TGG | + | chr4_2:61787231-61787250 | None:intergenic | 25.0% |
| ! | CCAAAATATTGTGTCAAAAA+TGG | + | chr4_2:61787244-61787263 | None:intergenic | 25.0% |
| !!! | CCATTTTTGACACAATATTT+TGG | - | chr4_2:61787241-61787260 | Msa0613150:CDS | 25.0% |
| ! | ACAACATGAATTTTTCCAAG+AGG | - | chr4_2:61784721-61784740 | Msa0613150:CDS | 30.0% |
| ! | CAACATGAATTTTTCCAAGA+GGG | - | chr4_2:61784722-61784741 | Msa0613150:CDS | 30.0% |
| ! | AACATGAATTTTTCCAAGAG+GGG | - | chr4_2:61784723-61784742 | Msa0613150:CDS | 30.0% |
| CTATAACTCTTTGTGTGTTA+GGG | + | chr4_2:61784776-61784795 | None:intergenic | 30.0% | |
| TCTATAACTCTTTGTGTGTT+AGG | + | chr4_2:61784777-61784796 | None:intergenic | 30.0% | |
| TAACACACAAAGAGTTATAG+AGG | - | chr4_2:61784776-61784795 | Msa0613150:intron | 30.0% | |
| ! | CAATTTTACTTCATGTCAAC+AGG | - | chr4_2:61785259-61785278 | Msa0613150:intron | 30.0% |
| TATGCAACTTTGAATTGGTA+AGG | + | chr4_2:61785326-61785345 | None:intergenic | 30.0% | |
| TGTCATATGCAACTTTGAAT+TGG | + | chr4_2:61785331-61785350 | None:intergenic | 30.0% | |
| !! | CCTTTAACTTTTGGTATCAA+GGG | - | chr4_2:61785377-61785396 | Msa0613150:intron | 30.0% |
| TGTATCATGCTCAAGAAATA+AGG | - | chr4_2:61785432-61785451 | Msa0613150:CDS | 30.0% | |
| !! | TTTCAGAAAGCATCAGATTA+AGG | + | chr4_2:61785469-61785488 | None:intergenic | 30.0% |
| ATATGCGATCAAAACACAAA+AGG | + | chr4_2:61785951-61785970 | None:intergenic | 30.0% | |
| GACATGTAATCATTGAAGAT+TGG | + | chr4_2:61785977-61785996 | None:intergenic | 30.0% | |
| ! | TCACTCAAAACTATCTTTTG+GGG | + | chr4_2:61786077-61786096 | None:intergenic | 30.0% |
| ! | CATCACTCAAAACTATCTTT+TGG | + | chr4_2:61786079-61786098 | None:intergenic | 30.0% |
| !!! | CAAAAGATAGTTTTGAGTGA+TGG | - | chr4_2:61786077-61786096 | Msa0613150:CDS | 30.0% |
| !!! | AGTTTTTTGACAAACTCAGA+GGG | + | chr4_2:61786149-61786168 | None:intergenic | 30.0% |
| ! | TGATGTTTTGTCAGTACATA+TGG | - | chr4_2:61786424-61786443 | Msa0613150:CDS | 30.0% |
| ATTAATACAGTACCCTCTAT+TGG | + | chr4_2:61786530-61786549 | None:intergenic | 30.0% | |
| GTAGAGTTGTTCAACAAAAT+TGG | - | chr4_2:61786758-61786777 | Msa0613150:CDS | 30.0% | |
| AACAAAATTGGGAAACAGAA+TGG | - | chr4_2:61786770-61786789 | Msa0613150:CDS | 30.0% | |
| CTAATGTCTAATTTACACTG+TGG | - | chr4_2:61786946-61786965 | Msa0613150:CDS | 30.0% | |
| TCTTATGTTATAGGATGCAA+AGG | - | chr4_2:61787038-61787057 | Msa0613150:CDS | 30.0% | |
| CTTATGTTATAGGATGCAAA+GGG | - | chr4_2:61787039-61787058 | Msa0613150:CDS | 30.0% | |
| TGGAAGTAATGTACATGAGA+AGG | - | chr4_2:61784605-61784624 | Msa0613150:three_prime_UTR | 35.0% | |
| GAGAGAACATTTACATCCAA+AGG | - | chr4_2:61784639-61784658 | Msa0613150:CDS | 35.0% | |
| GTTGTTCTGTTCCTTAATTC+TGG | + | chr4_2:61784706-61784725 | None:intergenic | 35.0% | |
| CATATCACCAAGGAATCATA+TGG | - | chr4_2:61784953-61784972 | Msa0613150:CDS | 35.0% | |
| GTGAAAACCATATGATTCCT+TGG | + | chr4_2:61784963-61784982 | None:intergenic | 35.0% | |
| ! | TATGGTTTTCACTCCTTTGT+TGG | - | chr4_2:61784971-61784990 | Msa0613150:CDS | 35.0% |
| ! | GCTAGAAAGAAGTATGAGTT+GGG | + | chr4_2:61785077-61785096 | None:intergenic | 35.0% |
| ! | AGCTAGAAAGAAGTATGAGT+TGG | + | chr4_2:61785078-61785097 | None:intergenic | 35.0% |
| CTCTTTAGATAATCCACCAT+TGG | + | chr4_2:61785303-61785322 | None:intergenic | 35.0% | |
| !! | GCCTTTAACTTTTGGTATCA+AGG | - | chr4_2:61785376-61785395 | Msa0613150:intron | 35.0% |
| CCCTTGATACCAAAAGTTAA+AGG | + | chr4_2:61785380-61785399 | None:intergenic | 35.0% | |
| ! | TTTTGGTATCAAGGGAGTAA+AGG | - | chr4_2:61785385-61785404 | Msa0613150:intron | 35.0% |
| !! | AACATTTTCAGCTTAGCCTT+TGG | + | chr4_2:61785583-61785602 | None:intergenic | 35.0% |
| ATACTTTCATCCTTTGACGT+TGG | - | chr4_2:61785886-61785905 | Msa0613150:intron | 35.0% | |
| !!! | CAGTTTTTTGACAAACTCAG+AGG | + | chr4_2:61786150-61786169 | None:intergenic | 35.0% |
| GTTGTCGAATGATACAGAAT+TGG | - | chr4_2:61786275-61786294 | Msa0613150:intron | 35.0% | |
| !! | TGATACAGAATTGGTGTTGA+TGG | - | chr4_2:61786284-61786303 | Msa0613150:intron | 35.0% |
| ! | GTTTTCTTGAACAAACTGGA+AGG | - | chr4_2:61786360-61786379 | Msa0613150:CDS | 35.0% |
| !! | ATGTCGGCTTAACTTTGTTT+AGG | + | chr4_2:61786471-61786490 | None:intergenic | 35.0% |
| ATGCATAGTACTACAGAAGT+AGG | - | chr4_2:61786599-61786618 | Msa0613150:intron | 35.0% | |
| AAAATTGGGAAACAGAATGG+AGG | - | chr4_2:61786773-61786792 | Msa0613150:CDS | 35.0% | |
| TAGATCAACAAGTGCCTTAT+AGG | + | chr4_2:61786879-61786898 | None:intergenic | 35.0% | |
| ! | ATAAGGCACTTGTTGATCTA+CGG | - | chr4_2:61786879-61786898 | Msa0613150:CDS | 35.0% |
| GAAACTTTCCCATTATACCT+TGG | + | chr4_2:61786909-61786928 | None:intergenic | 35.0% | |
| ! | GTTTTACGTGGCAGTAAATT+GGG | - | chr4_2:61787140-61787159 | Msa0613150:CDS | 35.0% |
| ! | TTTTACGTGGCAGTAAATTG+GGG | - | chr4_2:61787141-61787160 | Msa0613150:CDS | 35.0% |
| !!! | GACACAATATTTTGGTTGAG+TGG | - | chr4_2:61787249-61787268 | Msa0613150:CDS | 35.0% |
| !!! | AGAAGATCAGGTGTTGCTTT+TGG | - | chr4_2:61784585-61784604 | Msa0613150:three_prime_UTR | 40.0% |
| CGAAAATGGTCCATCTACAT+GGG | + | chr4_2:61784676-61784695 | None:intergenic | 40.0% | |
| ACGAAAATGGTCCATCTACA+TGG | + | chr4_2:61784677-61784696 | None:intergenic | 40.0% | |
| ! | TTTTCCAAGAGGGGAATAAC+AGG | - | chr4_2:61784732-61784751 | Msa0613150:CDS | 40.0% |
| TCTAGTCCTGCATATCTTGT+CGG | + | chr4_2:61784828-61784847 | None:intergenic | 40.0% | |
| !! | CTGCTTGTCGGTTTCTTAAA+GGG | - | chr4_2:61784901-61784920 | Msa0613150:intron | 40.0% |
| ATGTTGTGTGCATATCACCA+AGG | - | chr4_2:61784943-61784962 | Msa0613150:CDS | 40.0% | |
| ACACATGTTGAAGCCAACAA+AGG | + | chr4_2:61784987-61785006 | None:intergenic | 40.0% | |
| !! | TTGTTGGCTTCAACATGTGT+TGG | - | chr4_2:61784987-61785006 | Msa0613150:CDS | 40.0% |
| AGCAACAGACCTGAATTCAA+GGG | + | chr4_2:61785015-61785034 | None:intergenic | 40.0% | |
| AATACAGGATGCACTAGCAA+AGG | - | chr4_2:61785049-61785068 | Msa0613150:CDS | 40.0% | |
| ! | CTGATGCTTTCTGAAAATCC+AGG | - | chr4_2:61785473-61785492 | Msa0613150:CDS | 40.0% |
| ! | ATGCTTTCTGAAAATCCAGG+TGG | - | chr4_2:61785476-61785495 | Msa0613150:CDS | 40.0% |
| ! | TGCTTTCTGAAAATCCAGGT+GGG | - | chr4_2:61785477-61785496 | Msa0613150:CDS | 40.0% |
| CTGCTGCATTGTGTAGTTAT+TGG | - | chr4_2:61785643-61785662 | Msa0613150:CDS | 40.0% | |
| CTGCATTGTGTAGTTATTGG+AGG | - | chr4_2:61785646-61785665 | Msa0613150:CDS | 40.0% | |
| CATTGTGTAGTTATTGGAGG+TGG | - | chr4_2:61785649-61785668 | Msa0613150:CDS | 40.0% | |
| CATTCATGTCACACTCATTG+AGG | - | chr4_2:61785756-61785775 | Msa0613150:CDS | 40.0% | |
| ! | TGCAACGAAGCACTTAACAA+AGG | - | chr4_2:61785921-61785940 | Msa0613150:CDS | 40.0% |
| ! | AGTCTGGAGTTTGTCTTATG+CGG | - | chr4_2:61786030-61786049 | Msa0613150:intron | 40.0% |
| GATGGAACTGAAGTTCCTTA+TGG | - | chr4_2:61786095-61786114 | Msa0613150:CDS | 40.0% | |
| TGAAGTTCCTTATGGTCTCT+TGG | - | chr4_2:61786103-61786122 | Msa0613150:CDS | 40.0% | |
| TTCCTTATGGTCTCTTGGTT+TGG | - | chr4_2:61786108-61786127 | Msa0613150:CDS | 40.0% | |
| !! | ACAGAATTGGTGTTGATGGA+TGG | - | chr4_2:61786288-61786307 | Msa0613150:intron | 40.0% |
| TGGAAGATGTCTTTGCACTT+GGG | - | chr4_2:61786327-61786346 | Msa0613150:intron | 40.0% | |
| !!! | GCTGGTTTTCTTGAACAAAC+TGG | - | chr4_2:61786356-61786375 | Msa0613150:CDS | 40.0% |
| GAGTATACTTTCCTATGCAC+TGG | - | chr4_2:61786698-61786717 | Msa0613150:intron | 40.0% | |
| GTATAAACATATGGGGAGCA+TGG | - | chr4_2:61786841-61786860 | Msa0613150:CDS | 40.0% | |
| TACGGCAATCCAAGGTATAA+TGG | - | chr4_2:61786897-61786916 | Msa0613150:CDS | 40.0% | |
| ACGGCAATCCAAGGTATAAT+GGG | - | chr4_2:61786898-61786917 | Msa0613150:CDS | 40.0% | |
| ! | GGTTTTACGTGGCAGTAAAT+TGG | - | chr4_2:61787139-61787158 | Msa0613150:CDS | 40.0% |
| !! | CAGCAGGATAGGTTGAATTT+TGG | - | chr4_2:61787191-61787210 | Msa0613150:CDS | 40.0% |
| AGAAGCAACCTGAGAAGATC+AGG | - | chr4_2:61784573-61784592 | Msa0613150:three_prime_UTR | 45.0% | |
| AAGCAACACCTGATCTTCTC+AGG | + | chr4_2:61784584-61784603 | None:intergenic | 45.0% | |
| TCCTTACCTTCCCATGTAGA+TGG | - | chr4_2:61784663-61784682 | Msa0613150:CDS | 45.0% | |
| TCCATCTACATGGGAAGGTA+AGG | + | chr4_2:61784667-61784686 | None:intergenic | 45.0% | |
| AATGGTCCATCTACATGGGA+AGG | + | chr4_2:61784672-61784691 | None:intergenic | 45.0% | |
| AGTTCCTGTTATTCCCCTCT+TGG | + | chr4_2:61784739-61784758 | None:intergenic | 45.0% | |
| TTTGTGTGTTAGGGAGCTGA+TGG | + | chr4_2:61784767-61784786 | None:intergenic | 45.0% | |
| GATGATCCGACAAGATATGC+AGG | - | chr4_2:61784819-61784838 | Msa0613150:intron | 45.0% | |
| GACAAGATATGCAGGACTAG+AGG | - | chr4_2:61784827-61784846 | Msa0613150:intron | 45.0% | |
| AAGCCTAGAGTGGTTGTTCT+CGG | - | chr4_2:61784867-61784886 | Msa0613150:intron | 45.0% | |
| !! | GCTGCTTGTCGGTTTCTTAA+AGG | - | chr4_2:61784900-61784919 | Msa0613150:intron | 45.0% |
| ! | GTGTTGGTACCCTTGAATTC+AGG | - | chr4_2:61785003-61785022 | Msa0613150:CDS | 45.0% |
| CAGCAACAGACCTGAATTCA+AGG | + | chr4_2:61785016-61785035 | None:intergenic | 45.0% | |
| ! | TGAGCCTGTTGGTAGAATAC+AGG | - | chr4_2:61785034-61785053 | Msa0613150:CDS | 45.0% |
| GCATCCTGTATTCTACCAAC+AGG | + | chr4_2:61785041-61785060 | None:intergenic | 45.0% | |
| !! | TTCTTTCTAGCTTCCTGCAC+TGG | - | chr4_2:61785086-61785105 | Msa0613150:CDS | 45.0% |
| GACAAGCTTGTAATTGCAGC+TGG | - | chr4_2:61785347-61785366 | Msa0613150:intron | 45.0% | |
| !! | GGAGCTGAGCCTTTAACTTT+TGG | - | chr4_2:61785368-61785387 | Msa0613150:intron | 45.0% |
| ATGGATATGAAACACCCACC+TGG | + | chr4_2:61785494-61785513 | None:intergenic | 45.0% | |
| CCACTAAATTCCACTCCTGT+AGG | + | chr4_2:61785676-61785695 | None:intergenic | 45.0% | |
| CCTACAGGAGTGGAATTTAG+TGG | - | chr4_2:61785673-61785692 | Msa0613150:CDS | 45.0% | |
| ! | GTCTGGAGTTTGTCTTATGC+GGG | - | chr4_2:61786031-61786050 | Msa0613150:intron | 45.0% |
| ! | TCTGGAGTTTGTCTTATGCG+GGG | - | chr4_2:61786032-61786051 | Msa0613150:intron | 45.0% |
| GACCAAACCAAGAGACCATA+AGG | + | chr4_2:61786113-61786132 | None:intergenic | 45.0% | |
| GCAAAGACATCTTCCACAGA+CGG | + | chr4_2:61786323-61786342 | None:intergenic | 45.0% | |
| GTGGAAGATGTCTTTGCACT+TGG | - | chr4_2:61786326-61786345 | Msa0613150:intron | 45.0% | |
| GGAAGATGTCTTTGCACTTG+GGG | - | chr4_2:61786328-61786347 | Msa0613150:intron | 45.0% | |
| TGACAGGTTGCTGAAAGACA+AGG | - | chr4_2:61786725-61786744 | Msa0613150:CDS | 45.0% | |
| GACAGGTTGCTGAAAGACAA+GGG | - | chr4_2:61786726-61786745 | Msa0613150:CDS | 45.0% | |
| TGGGAAACAGAATGGAGGAA+AGG | - | chr4_2:61786778-61786797 | Msa0613150:CDS | 45.0% | |
| TGTTGATCTACGGCAATCCA+AGG | - | chr4_2:61786889-61786908 | Msa0613150:CDS | 45.0% | |
| ! | GTTTTGTCAGCTGGCTGATA+TGG | - | chr4_2:61787076-61787095 | Msa0613150:CDS | 45.0% |
| CAGCACACGTGTAAGATATG+CGG | + | chr4_2:61787106-61787125 | None:intergenic | 45.0% | |
| ! | CTGGAGGAATAGGTTTTACG+TGG | - | chr4_2:61787128-61787147 | Msa0613150:CDS | 45.0% |
| !! | TGGGGAACCACTTTTGTCTT+TGG | - | chr4_2:61787159-61787178 | Msa0613150:CDS | 45.0% |
| GTCTCTGCCAAAGACAAAAG+TGG | + | chr4_2:61787169-61787188 | None:intergenic | 45.0% | |
| ATGGGAAGGTAAGGAGCCTT+TGG | + | chr4_2:61784658-61784677 | None:intergenic | 50.0% | |
| GGACTAGAGGCAACAAAACC+AGG | - | chr4_2:61784840-61784859 | Msa0613150:intron | 50.0% | |
| ACCAGGTGAAAAGCCTAGAG+TGG | - | chr4_2:61784857-61784876 | Msa0613150:intron | 50.0% | |
| ! | ACCACTCTAGGCTTTTCACC+TGG | + | chr4_2:61784861-61784880 | None:intergenic | 50.0% |
| GTACCGAGAACAACCACTCT+AGG | + | chr4_2:61784873-61784892 | None:intergenic | 50.0% | |
| AGAGTGGTTGTTCTCGGTAC+CGG | - | chr4_2:61784873-61784892 | Msa0613150:intron | 50.0% | |
| GTTTGTGTCAACTCCAGTGC+AGG | + | chr4_2:61785102-61785121 | None:intergenic | 50.0% | |
| ATGTCAACAGGTCTACTGCG+AGG | - | chr4_2:61785271-61785290 | Msa0613150:intron | 50.0% | |
| TACTGCGAGGCAGTTACCAA+TGG | - | chr4_2:61785284-61785303 | Msa0613150:intron | 50.0% | |
| GTTATTGGAGGTGGTCCTAC+AGG | - | chr4_2:61785658-61785677 | Msa0613150:CDS | 50.0% | |
| GCTTCGTTGCATACTGTCGA+AGG | + | chr4_2:61785912-61785931 | None:intergenic | 50.0% | |
| AGTTTGTCTTATGCGGGGTG+TGG | - | chr4_2:61786037-61786056 | Msa0613150:intron | 50.0% | |
| !! | TTGGTTTGGTCCACAGGAGT+TGG | - | chr4_2:61786122-61786141 | Msa0613150:CDS | 50.0% |
| CTGAATCTTCCAAGCTCTCC+AGG | - | chr4_2:61786167-61786186 | Msa0613150:CDS | 50.0% | |
| AATCTTCCAAGCTCTCCAGG+TGG | - | chr4_2:61786170-61786189 | Msa0613150:CDS | 50.0% | |
| TTTGCACTTGGGGATTGTGC+TGG | - | chr4_2:61786338-61786357 | Msa0613150:intron | 50.0% | |
| ! | TGAGCTAAAGCTGGAAGCAC+TGG | + | chr4_2:61786386-61786405 | None:intergenic | 50.0% |
| ! | AGTGCTTCCAGCTTTAGCTC+AGG | - | chr4_2:61786385-61786404 | Msa0613150:CDS | 50.0% |
| AGGCTAACCTGAGCTAAAGC+TGG | + | chr4_2:61786395-61786414 | None:intergenic | 50.0% | |
| GTCTTTCAGCAACCTGTCAG+TGG | + | chr4_2:61786724-61786743 | None:intergenic | 50.0% | |
| ! | GGAAAGGCTTTGTCTGCAGA+TGG | - | chr4_2:61786794-61786813 | Msa0613150:CDS | 50.0% |
| TCTGCAGATGGCATCACACT+TGG | - | chr4_2:61786806-61786825 | Msa0613150:CDS | 50.0% | |
| GGCATCAGTAGGTGCCTATA+AGG | - | chr4_2:61786862-61786881 | Msa0613150:CDS | 50.0% | |
| ! | GCAAAGGGATTGTCACTTGC+TGG | - | chr4_2:61787054-61787073 | Msa0613150:CDS | 50.0% |
| !!! | CACTTGCTGGTTTTGTCAGC+TGG | - | chr4_2:61787067-61787086 | Msa0613150:CDS | 50.0% |
| ATCTTACACGTGTGCTGAGC+TGG | - | chr4_2:61787109-61787128 | Msa0613150:CDS | 50.0% | |
| TCTTTGGCAGAGACAACAGC+AGG | - | chr4_2:61787175-61787194 | Msa0613150:CDS | 50.0% | |
| !! | TGGTTGTTCTCGGTACCGGT+TGG | - | chr4_2:61784877-61784896 | Msa0613150:intron | 55.0% |
| !! | GGTTGTTCTCGGTACCGGTT+GGG | - | chr4_2:61784878-61784897 | Msa0613150:intron | 55.0% |
| AAACCGACAAGCAGCCCAAC+CGG | + | chr4_2:61784895-61784914 | None:intergenic | 55.0% | |
| AGGTCTGTTGCTGAGCCTGT+TGG | - | chr4_2:61785023-61785042 | Msa0613150:CDS | 55.0% | |
| TGCGAGGCAGTTACCAATGG+TGG | - | chr4_2:61785287-61785306 | Msa0613150:intron | 55.0% | |
| CTGTCGAAGGCCAACGTCAA+AGG | + | chr4_2:61785899-61785918 | None:intergenic | 55.0% | |
| TCTTATGCGGGGTGTGGTGA+AGG | - | chr4_2:61786043-61786062 | Msa0613150:intron | 55.0% | |
| !! | GGTCTCTTGGTTTGGTCCAC+AGG | - | chr4_2:61786116-61786135 | Msa0613150:CDS | 55.0% |
| TTCCAAGCTCTCCAGGTGGA+AGG | - | chr4_2:61786174-61786193 | Msa0613150:CDS | 55.0% | |
| TACCTTCCACCTGGAGAGCT+TGG | + | chr4_2:61786179-61786198 | None:intergenic | 55.0% | |
| GGCTTCACATACCTTCCACC+TGG | + | chr4_2:61786188-61786207 | None:intergenic | 55.0% | |
| ATGGATGCGTGTTCCGTCTG+TGG | - | chr4_2:61786307-61786326 | Msa0613150:intron | 55.0% | |
| ! | ATGGGGAGCATGGCATCAGT+AGG | - | chr4_2:61786851-61786870 | Msa0613150:CDS | 55.0% |
| TTACACGTGTGCTGAGCTGG+AGG | - | chr4_2:61787112-61787131 | Msa0613150:CDS | 55.0% | |
| GTGTGCTGAGCTGGAGGAAT+AGG | - | chr4_2:61787118-61787137 | Msa0613150:CDS | 55.0% | |
| GGCAGAGACAACAGCAGGAT+AGG | - | chr4_2:61787180-61787199 | Msa0613150:CDS | 55.0% | |
| !! | GTACCGGTTGGGCTGCTTGT+CGG | - | chr4_2:61784889-61784908 | Msa0613150:intron | 60.0% |
| TGGAGGTGGTCCTACAGGAG+TGG | - | chr4_2:61785663-61785682 | Msa0613150:CDS | 60.0% | |
| TATGCGGGGTGTGGTGAAGG+AGG | - | chr4_2:61786046-61786065 | Msa0613150:intron | 60.0% | |
| CTCAGAGGGACCAACTCCTG+TGG | + | chr4_2:61786135-61786154 | None:intergenic | 60.0% | |
| CCTGTCAGTGGCCAGTGCAT+AGG | + | chr4_2:61786712-61786731 | None:intergenic | 60.0% | |
| ! | CCTATGCACTGGCCACTGAC+AGG | - | chr4_2:61786709-61786728 | Msa0613150:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 61784552 | 61787286 | 61784552 | ID=Msa0613150;Name=Msa0613150 |
| chr4_2 | mRNA | 61784552 | 61787286 | 61784552 | ID=Msa0613150-mRNA-1;Parent=Msa0613150;Name=Msa0613150-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|1|0.87|1|1|1|8|80|544 |
| chr4_2 | exon | 61784552 | 61784787 | 61784552 | ID=Msa0613150-mRNA-1:exon:16903;Parent=Msa0613150-mRNA-1 |
| chr4_2 | exon | 61784928 | 61785107 | 61784928 | ID=Msa0613150-mRNA-1:exon:16902;Parent=Msa0613150-mRNA-1 |
| chr4_2 | exon | 61785432 | 61785546 | 61785432 | ID=Msa0613150-mRNA-1:exon:16901;Parent=Msa0613150-mRNA-1 |
| chr4_2 | exon | 61785643 | 61785806 | 61785643 | ID=Msa0613150-mRNA-1:exon:16900;Parent=Msa0613150-mRNA-1 |
| chr4_2 | exon | 61785896 | 61785961 | 61785896 | ID=Msa0613150-mRNA-1:exon:16899;Parent=Msa0613150-mRNA-1 |
| chr4_2 | exon | 61786061 | 61786221 | 61786061 | ID=Msa0613150-mRNA-1:exon:16898;Parent=Msa0613150-mRNA-1 |
| chr4_2 | exon | 61786344 | 61786557 | 61786344 | ID=Msa0613150-mRNA-1:exon:16897;Parent=Msa0613150-mRNA-1 |
| chr4_2 | exon | 61786708 | 61787286 | 61786708 | ID=Msa0613150-mRNA-1:exon:16896;Parent=Msa0613150-mRNA-1 |
| chr4_2 | CDS | 61786708 | 61787286 | 61786708 | ID=Msa0613150-mRNA-1:cds;Parent=Msa0613150-mRNA-1 |
| chr4_2 | CDS | 61786344 | 61786557 | 61786344 | ID=Msa0613150-mRNA-1:cds;Parent=Msa0613150-mRNA-1 |
| chr4_2 | CDS | 61786061 | 61786221 | 61786061 | ID=Msa0613150-mRNA-1:cds;Parent=Msa0613150-mRNA-1 |
| chr4_2 | CDS | 61785896 | 61785961 | 61785896 | ID=Msa0613150-mRNA-1:cds;Parent=Msa0613150-mRNA-1 |
| chr4_2 | CDS | 61785643 | 61785806 | 61785643 | ID=Msa0613150-mRNA-1:cds;Parent=Msa0613150-mRNA-1 |
| chr4_2 | CDS | 61785432 | 61785546 | 61785432 | ID=Msa0613150-mRNA-1:cds;Parent=Msa0613150-mRNA-1 |
| chr4_2 | CDS | 61784928 | 61785107 | 61784928 | ID=Msa0613150-mRNA-1:cds;Parent=Msa0613150-mRNA-1 |
| chr4_2 | CDS | 61784632 | 61784787 | 61784632 | ID=Msa0613150-mRNA-1:cds;Parent=Msa0613150-mRNA-1 |
| chr4_2 | three_prime_UTR | 61784552 | 61784631 | 61784552 | ID=Msa0613150-mRNA-1:three_prime_utr;Parent=Msa0613150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
