AlfalfaGEDB | Msa0881240

M. sativa cultivar zhongmu-4 / Msa0881240

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881240	XP_024638217.1	100.000	78	0	0	1	78	1	78	9.39e-48	156

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881240	A0A396IE92	100.000	78	0	0	1	78	1	78	4.49e-48	156

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0053650	Msa0881240	-0.801782	7.655309e-49	-8.615850e-47
Msa0169710	Msa0881240	0.810216	1.286918e-50	-8.615850e-47
Msa0195030	Msa0881240	0.835587	1.538799e-56	-8.615850e-47
Msa0237180	Msa0881240	0.825350	4.918197e-54	-8.615850e-47
Msa0266380	Msa0881240	-0.802566	5.279864e-49	-8.615850e-47
Msa0274940	Msa0881240	0.829870	4.041037e-55	-8.615850e-47
Msa0315660	Msa0881240	0.835778	1.376297e-56	-8.615850e-47
Msa0371490	Msa0881240	0.838336	3.055049e-57	-8.615850e-47
Msa0378620	Msa0881240	-0.821259	4.440062e-53	-8.615850e-47
Msa0382670	Msa0881240	0.807837	4.158479e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881240	MtrunA17_Chr4g0063171	100.000	78	0	0	1	78	1	78	8.64e-52	156

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881240	AT1G68680.1	70.667	75	20	1	4	78	3	75	5.27e-31	103

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Find 42 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAACGATCTCTCAAAAC+AGG	0.448254	6_1:-28268584	None:intergenic
AATAATTTATTGAGGACCTG+AGG	0.609349	6_1:-28271379	None:intergenic
ACAAGTCAAATAATTTATTG+AGG	0.525568	6_1:-28271387	None:intergenic
ACAGAGAACCCGTTGCAAGA+AGG	0.610499	6_1:+28268387	Msa0881240:intron
ACTTGTGAATAATTTATATA+TGG	0.326133	6_1:+28271724	Msa0881240:three_prime_UTR
AGAAAACGTTACATGTTAGC+AGG	0.515067	6_1:-28268299	None:intergenic
AGAACAGGAGCATATATGAG+AGG	0.644560	6_1:-28268443	None:intergenic
AGAATAATTATGGAATTTGG+AGG	0.519417	6_1:+28271552	Msa0881240:three_prime_UTR
AGTAGAATAATTATGGAATT+TGG	0.210855	6_1:+28271549	Msa0881240:three_prime_UTR
AGTGGAGTGACTAACTTAGA+GGG	0.580435	6_1:-28268466	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCAGTGTGATTCATTGTAT+CGG	+	chr6_1:28268193-28268212	Msa0881240:five_prime_UTR	30.0%
GATTCATTGTATCGGAAAAA+AGG	+	chr6_1:28268201-28268220	Msa0881240:five_prime_UTR	30.0%
TTTCAATTTCAGTTCGTTTG+GGG	+	chr6_1:28268549-28268568	Msa0881240:intron	30.0%
TTTGTGTAGGATTGCAAAAT+GGG	+	chr6_1:28268838-28268857	Msa0881240:intron	30.0%
TACAACATCTTTCCTACTAT+AGG	-	chr6_1:28268965-28268984	None:intergenic	30.0%
AAGATGTTGTAACTAAGCTT+AGG	+	chr6_1:28268974-28268993	Msa0881240:intron	30.0%
CAACATTTAGACTATCAAAC+AGG	-	chr6_1:28269393-28269412	None:intergenic	30.0%
ATAGTCTAAATGTTGTCAAG+TGG	+	chr6_1:28269398-28269417	Msa0881240:intron	30.0%
TATGCTATAAGGGCTTAATT+AGG	-	chr6_1:28269428-28269447	None:intergenic	30.0%
AATTAAGCCCTTATAGCATA+AGG	+	chr6_1:28269428-28269447	Msa0881240:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	28268173	28271752	28268173	ID=Msa0881240;Name=Msa0881240
chr6_1	mRNA	28268173	28271752	28268173	ID=Msa0881240-mRNA-1;Parent=Msa0881240;Name=Msa0881240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=105\|1\|1\|1\|0.66\|0.75\|4\|423\|78
chr6_1	exon	28268173	28268309	28268173	ID=Msa0881240-mRNA-1:exon:7095;Parent=Msa0881240-mRNA-1
chr6_1	exon	28268391	28268473	28268391	ID=Msa0881240-mRNA-1:exon:7096;Parent=Msa0881240-mRNA-1
chr6_1	exon	28268561	28268651	28268561	ID=Msa0881240-mRNA-1:exon:7097;Parent=Msa0881240-mRNA-1
chr6_1	exon	28271299	28271752	28271299	ID=Msa0881240-mRNA-1:exon:7098;Parent=Msa0881240-mRNA-1
chr6_1	five_prime_UTR	28268173	28268277	28268173	ID=Msa0881240-mRNA-1:five_prime_utr;Parent=Msa0881240-mRNA-1
chr6_1	CDS	28268278	28268309	28268278	ID=Msa0881240-mRNA-1:cds;Parent=Msa0881240-mRNA-1
chr6_1	CDS	28268391	28268473	28268391	ID=Msa0881240-mRNA-1:cds;Parent=Msa0881240-mRNA-1
chr6_1	CDS	28268561	28268651	28268561	ID=Msa0881240-mRNA-1:cds;Parent=Msa0881240-mRNA-1
chr6_1	CDS	28271299	28271329	28271299	ID=Msa0881240-mRNA-1:cds;Parent=Msa0881240-mRNA-1
chr6_1	three_prime_UTR	28271330	28271752	28271330	ID=Msa0881240-mRNA-1:three_prime_utr;Parent=Msa0881240-mRNA-1

Gene Sequence	>Msa0881240 ATGGCGCCGACGTCGTTCGATCCTGCTAACATAGAACCCGTTGCAAGAAGGAAGAACAATGGTCCTCCTCTCAAGTTCCTTTTTCCTCTCATATATGCTCCTGTTCTCCCTCTAATTCGTTTGGGGTTGCGGCATAAACCTGTTTTGAGAGATCGTTTGTTTACAGCTGTCTTGGCTGGTGCTTTTCTTCATGGAGGCTATCTTGTATCAGATTTGTATGATGCTGAGAGCAAATGA
Protein sequence	>Msa0881240 MAPTSFDPANIEPVARRKNNGPPLKFLFPLIYAPVLPLIRLGLRHKPVLRDRLFTAVLAGAFLHGGYLVSDLYDAESK*