Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982260 | XP_003601758.1 | 97.561 | 123 | 3 | 0 | 1 | 123 | 1 | 123 | 1.61e-84 | 252 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982260 | sp|Q9C7F5|NTF2B_ARATH | 82.114 | 123 | 22 | 0 | 1 | 123 | 4 | 126 | 5.21e-73 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982260 | G7JBF4 | 97.561 | 123 | 3 | 0 | 1 | 123 | 1 | 123 | 7.68e-85 | 252 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003330 | Msa0982260 | 0.813408 | 2.599156e-51 | -8.615850e-47 |
| Msa0679560 | Msa0982260 | -0.807697 | 4.453346e-50 | -8.615850e-47 |
| Msa0148000 | Msa0982260 | -0.808194 | 3.492011e-50 | -8.615850e-47 |
| Msa0195030 | Msa0982260 | 0.855086 | 7.988661e-62 | -8.615850e-47 |
| Msa0212490 | Msa0982260 | 0.805758 | 1.143435e-49 | -8.615850e-47 |
| Msa0237180 | Msa0982260 | 0.836485 | 9.104980e-57 | -8.615850e-47 |
| Msa0378620 | Msa0982260 | -0.802798 | 4.728381e-49 | -8.615850e-47 |
| Msa0382670 | Msa0982260 | 0.825209 | 5.310930e-54 | -8.615850e-47 |
| Msa0389800 | Msa0982260 | 0.999700 | 0.000000e+00 | -8.615850e-47 |
| Msa0416470 | Msa0982260 | 0.814010 | 1.915523e-51 | -8.615850e-47 |
| Msa0432260 | Msa0982260 | -0.852733 | 3.803346e-61 | -8.615850e-47 |
| Msa0436830 | Msa0982260 | -0.819143 | 1.355585e-52 | -8.615850e-47 |
| Msa0468140 | Msa0982260 | 0.987550 | 1.150549e-170 | -8.615850e-47 |
| Msa0476730 | Msa0982260 | -0.817342 | 3.465463e-52 | -8.615850e-47 |
| Msa0982260 | Msa1041830 | 0.809697 | 1.664414e-50 | -8.615850e-47 |
| Msa0982260 | Msa1102090 | 0.804565 | 2.032353e-49 | -8.615850e-47 |
| Msa0982260 | Msa1124980 | 0.827665 | 1.380213e-54 | -8.615850e-47 |
| Msa0982260 | Msa1152860 | 0.826956 | 2.041072e-54 | -8.615850e-47 |
| Msa0982260 | Msa1167360 | 0.835475 | 1.642606e-56 | -8.615850e-47 |
| Msa0982260 | Msa1225040 | 0.851670 | 7.629532e-61 | -8.615850e-47 |
| Msa0982260 | Msa1261970 | 0.826463 | 2.675511e-54 | -8.615850e-47 |
| Msa0982260 | Msa1307730 | 0.998980 | 1.721124e-284 | -8.615850e-47 |
| Msa0982260 | Msa1349870 | 0.817590 | 3.047000e-52 | -8.615850e-47 |
| Msa0982260 | Msa1423050 | 0.832074 | 1.163121e-55 | -8.615850e-47 |
| Msa0239420 | Msa0982260 | 0.829283 | 5.613180e-55 | -8.615850e-47 |
| Msa0243750 | Msa0982260 | 0.805532 | 1.275465e-49 | -8.615850e-47 |
| Msa0253300 | Msa0982260 | 0.829002 | 6.566169e-55 | -8.615850e-47 |
| Msa0274940 | Msa0982260 | 0.856504 | 3.077208e-62 | -8.615850e-47 |
| Msa0282290 | Msa0982260 | 0.806371 | 8.497417e-50 | -8.615850e-47 |
| Msa0315660 | Msa0982260 | 0.849004 | 4.271113e-60 | -8.615850e-47 |
| Msa0329650 | Msa0982260 | 0.801478 | 8.834749e-49 | -8.615850e-47 |
| Msa0511760 | Msa0982260 | 0.804955 | 1.684480e-49 | -8.615850e-47 |
| Msa0569980 | Msa0982260 | -0.802244 | 6.151102e-49 | -8.615850e-47 |
| Msa0573550 | Msa0982260 | 0.801909 | 7.208430e-49 | -8.615850e-47 |
| Msa0880050 | Msa0982260 | 0.831573 | 1.546400e-55 | -8.615850e-47 |
| Msa0881240 | Msa0982260 | 0.822209 | 2.677604e-53 | -8.615850e-47 |
| Msa0929700 | Msa0982260 | 0.804177 | 2.448072e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982260 | MtrunA17_Chr3g0122371 | 97.561 | 123 | 3 | 0 | 1 | 123 | 1 | 123 | 1.48e-88 | 252 |
| Msa0982260 | MtrunA17_Chr8g0377491 | 90.244 | 123 | 12 | 0 | 1 | 123 | 1 | 123 | 1.13e-81 | 235 |
| Msa0982260 | MtrunA17_Chr2g0308331 | 80.851 | 94 | 12 | 1 | 1 | 94 | 1 | 88 | 2.46e-49 | 153 |
| Msa0982260 | MtrunA17_Chr7g0235151 | 35.246 | 122 | 71 | 5 | 3 | 119 | 12 | 130 | 3.73e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982260 | AT1G27970.1 | 82.114 | 123 | 22 | 0 | 1 | 123 | 4 | 126 | 5.30e-74 | 216 |
| Msa0982260 | AT1G27310.1 | 82.927 | 123 | 20 | 1 | 1 | 123 | 1 | 122 | 2.57e-73 | 214 |
| Msa0982260 | AT1G27970.2 | 81.356 | 118 | 22 | 0 | 1 | 118 | 4 | 121 | 1.22e-69 | 205 |
| Msa0982260 | AT1G11570.2 | 59.504 | 121 | 46 | 1 | 6 | 123 | 12 | 132 | 9.42e-47 | 147 |
| Msa0982260 | AT1G11570.3 | 59.504 | 121 | 46 | 1 | 6 | 123 | 33 | 153 | 1.24e-46 | 147 |
| Msa0982260 | AT1G11570.1 | 57.426 | 101 | 40 | 1 | 6 | 103 | 12 | 112 | 1.57e-34 | 116 |
| Msa0982260 | AT1G11570.4 | 57.426 | 101 | 40 | 1 | 6 | 103 | 33 | 133 | 2.59e-34 | 116 |
| Msa0982260 | AT5G48650.1 | 37.302 | 126 | 70 | 6 | 1 | 120 | 11 | 133 | 2.73e-12 | 62.4 |
Find 68 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATTTGCATCTAAAATT+TGG | 0.111315 | 6_4:+21949805 | Msa0982260:three_prime_UTR |
| CAGACATTTAAAATTAAAAT+TGG | 0.120296 | 6_4:+21949654 | Msa0982260:three_prime_UTR |
| AGATGCAAATTGCATGAATA+TGG | 0.182084 | 6_4:-21949796 | None:intergenic |
| CTTTGAAGGTCAGCAAATTA+TGG | 0.205195 | 6_4:+21947698 | Msa0982260:CDS |
| AAAATTAAAATTGGGTCTTT+TGG | 0.234324 | 6_4:+21949663 | Msa0982260:three_prime_UTR |
| TGTTGAAGATCAATGAATAT+TGG | 0.239280 | 6_4:+21949750 | Msa0982260:three_prime_UTR |
| GTTGAAGATCAATGAATATT+GGG | 0.271194 | 6_4:+21949751 | Msa0982260:three_prime_UTR |
| ATTGCTTGGATATATATAAT+TGG | 0.283570 | 6_4:+21949934 | Msa0982260:three_prime_UTR |
| CAGCGACAATTCAAATTTAG+AGG | 0.334225 | 6_4:+21950003 | Msa0982260:three_prime_UTR |
| ATACAAGACTTGCTTTAGAT+TGG | 0.359930 | 6_4:-21950062 | None:intergenic |
| TTTGAAGGTCAGCAAATTAT+GGG | 0.362536 | 6_4:+21947699 | Msa0982260:CDS |
| AGTTTAATTTCTGCTTTGTT+TGG | 0.367421 | 6_4:+21950131 | Msa0982260:three_prime_UTR |
| AGCCATTCCAATTGATTGCT+TGG | 0.382527 | 6_4:+21949920 | Msa0982260:three_prime_UTR |
| AATGCCTTTGACAATGCGTT+TGG | 0.385167 | 6_4:-21947597 | None:intergenic |
| ATTGTGTTTAAACTCTTTGA+AGG | 0.385926 | 6_4:+21949721 | Msa0982260:three_prime_UTR |
| CTCTATCTCACTCCTTGGCC+TGG | 0.398404 | 6_4:-21947513 | None:intergenic |
| GGTTCTATGCTCACCTTTGA+AGG | 0.402799 | 6_4:+21947684 | Msa0982260:CDS |
| CGTGTTGTTCGCCGGCGAGC+TGG | 0.403242 | 6_4:-21947848 | None:intergenic |
| TATATATCCAAGCAATCAAT+TGG | 0.405869 | 6_4:-21949927 | None:intergenic |
| CGCATTGTCAAAGGCATTCG+TGG | 0.412022 | 6_4:+21947602 | Msa0982260:CDS |
| CATAATTTGCTGACCTTCAA+AGG | 0.412917 | 6_4:-21947697 | None:intergenic |
| GTTTAAACACAATTCTAAAC+AGG | 0.413628 | 6_4:-21949711 | None:intergenic |
| AGACATTTAAAATTAAAATT+GGG | 0.414797 | 6_4:+21949655 | Msa0982260:three_prime_UTR |
| CTTGCGGTGTTGGTATCAAA+TGG | 0.429115 | 6_4:-21949536 | None:intergenic |
| TTGGTAGAGAGTGGCGAGAT+TGG | 0.433392 | 6_4:-21947658 | None:intergenic |
| TGGTAGAGAGTGGCGAGATT+GGG | 0.451654 | 6_4:-21947657 | None:intergenic |
| TTCTTCACGCATAGTTCAAA+CGG | 0.464644 | 6_4:-21949587 | None:intergenic |
| TGATGGAGTGATGGCACTGC+TGG | 0.466864 | 6_4:-21947761 | None:intergenic |
| AATTGACCTGACTGAATTTG+AGG | 0.471209 | 6_4:-21947872 | None:intergenic |
| ATTTGATTTCATTGCTGAGT+TGG | 0.473341 | 6_4:+21949865 | Msa0982260:three_prime_UTR |
| TTTGAGGGCGTGTTGTTCGC+CGG | 0.484969 | 6_4:-21947856 | None:intergenic |
| TTGAAGATCAATGAATATTG+GGG | 0.510000 | 6_4:+21949752 | Msa0982260:three_prime_UTR |
| GCGCTTATTTATAAGAAGCC+AGG | 0.512620 | 6_4:+21947495 | Msa0982260:five_prime_UTR |
| ACCGTCGATTGTCAACCTTC+TGG | 0.514517 | 6_4:+21947786 | Msa0982260:CDS |
| ATTGGGACGGTTGGTGTCGA+AGG | 0.521383 | 6_4:-21947640 | None:intergenic |
| GAGTGATGGCACTGCTGGAA+AGG | 0.524413 | 6_4:-21947756 | None:intergenic |
| ATTATTGCAGTGTCATGCTT+AGG | 0.526314 | 6_4:+21950102 | Msa0982260:three_prime_UTR |
| TTGACAATCGACGGTGGTGA+TGG | 0.528680 | 6_4:-21947778 | None:intergenic |
| TAATAGCTTCCTTGCGGTGT+TGG | 0.531758 | 6_4:-21949546 | None:intergenic |
| ATTGACCTGACTGAATTTGA+GGG | 0.536270 | 6_4:-21947871 | None:intergenic |
| AGTCTCTCTATCTCACTCCT+TGG | 0.546043 | 6_4:-21947518 | None:intergenic |
| ATTTATAAGAAGCCAGGCCA+AGG | 0.547142 | 6_4:+21947501 | Msa0982260:five_prime_UTR |
| ATGCCGCCGTTAGCGCCAGA+AGG | 0.549119 | 6_4:-21947801 | None:intergenic |
| ATGGCTAGCACACTTTGTGC+TGG | 0.551762 | 6_4:-21949903 | None:intergenic |
| TGTCAACCTTCTGGCGCTAA+CGG | 0.557071 | 6_4:+21947795 | Msa0982260:CDS |
| AGTGGCGAGATTGGGACGGT+TGG | 0.563337 | 6_4:-21947649 | None:intergenic |
| ATCCAAGCAATCAATTGGAA+TGG | 0.565549 | 6_4:-21949922 | None:intergenic |
| GGGACGGTTGGTGTCGAAGG+TGG | 0.565989 | 6_4:-21947637 | None:intergenic |
| AGGTGAGCATAGAACCATCT+TGG | 0.568405 | 6_4:-21947677 | None:intergenic |
| CTCGCCACTCTCTACCAAGA+TGG | 0.569246 | 6_4:+21947663 | Msa0982260:CDS |
| ACACGCCCTCAAATTCAGTC+AGG | 0.570302 | 6_4:+21947866 | Msa0982260:CDS |
| CAGAGAAAGAGATCGTGTTA+CGG | 0.571732 | 6_4:+21947555 | Msa0982260:five_prime_UTR |
| GGATCCAAACGCATTGTCAA+AGG | 0.574827 | 6_4:+21947593 | Msa0982260:CDS |
| ACTTTGTGCTGGCTACATAA+CGG | 0.577022 | 6_4:-21949892 | None:intergenic |
| TTACGGCGGCGTAAGAGCGA+TGG | 0.580005 | 6_4:+21947572 | Msa0982260:exon |
| AGTGGTAATCTCCAGCTCGC+CGG | 0.581878 | 6_4:+21947837 | Msa0982260:CDS |
| AGTGATGGCACTGCTGGAAA+GGG | 0.591260 | 6_4:-21947755 | None:intergenic |
| GGCATGCTTGTCTTTGTCAG+TGG | 0.596448 | 6_4:+21947819 | Msa0982260:CDS |
| CATTTGATACCAACACCGCA+AGG | 0.621557 | 6_4:+21949537 | Msa0982260:CDS |
| GCCAGAAGGTTGACAATCGA+CGG | 0.623192 | 6_4:-21947787 | None:intergenic |
| AGAACCATCTTGGTAGAGAG+TGG | 0.624728 | 6_4:-21947667 | None:intergenic |
| CGACGGTGGTGATGGAGTGA+TGG | 0.635677 | 6_4:-21947770 | None:intergenic |
| AACACATAATAGCTTCCTTG+CGG | 0.638641 | 6_4:-21949552 | None:intergenic |
| CAACCTTCTGGCGCTAACGG+CGG | 0.643186 | 6_4:+21947798 | Msa0982260:CDS |
| AGAGAGTGGCGAGATTGGGA+CGG | 0.652017 | 6_4:-21947653 | None:intergenic |
| AGAAAGAGATCGTGTTACGG+CGG | 0.704735 | 6_4:+21947558 | Msa0982260:five_prime_UTR |
| TGAAGATCAATGAATATTGG+GGG | 0.706123 | 6_4:+21949753 | Msa0982260:three_prime_UTR |
| AGAAGGTTGACAATCGACGG+TGG | 0.721439 | 6_4:-21947784 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCTATTTGTTAATTTTA+GGG | + | chr6_4:21947921-21947940 | Msa0982260:intron | 10.0% |
| !!! | AGACATTTAAAATTAAAATT+GGG | + | chr6_4:21949655-21949674 | Msa0982260:three_prime_UTR | 10.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr6_4:21949047-21949066 | Msa0982260:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr6_4:21949047-21949066 | Msa0982260:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr6_4:21949047-21949066 | Msa0982260:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr6_4:21949047-21949066 | Msa0982260:intron | 100.0% |
| !!! | GTTTTCTATTTGTTAATTTT+AGG | + | chr6_4:21947920-21947939 | Msa0982260:intron | 15.0% |
| !!! | TTTCATGATTAAGTTTTAAT+TGG | + | chr6_4:21947996-21948015 | Msa0982260:intron | 15.0% |
| !!! | GTATTATCAATATTCTAAAA+TGG | + | chr6_4:21948217-21948236 | Msa0982260:intron | 15.0% |
| !!! | ATTAACATTTTACAATTCTA+AGG | - | chr6_4:21948244-21948263 | None:intergenic | 15.0% |
| !! | AGAATTGTAAAATGTTAATT+AGG | + | chr6_4:21948245-21948264 | Msa0982260:intron | 15.0% |
| !!! | TTTTATTTTAGTGATCATTT+TGG | + | chr6_4:21948488-21948507 | Msa0982260:intron | 15.0% |
| !! | TTGATATAATCAACAATTTA+AGG | + | chr6_4:21948537-21948556 | Msa0982260:intron | 15.0% |
| !! | TGATATAATCAACAATTTAA+GGG | + | chr6_4:21948538-21948557 | Msa0982260:intron | 15.0% |
| !! | AAATCCATCATAATAATAAT+AGG | - | chr6_4:21948581-21948600 | None:intergenic | 15.0% |
| !!! | TATTATTATTATGATGGATT+TGG | + | chr6_4:21948580-21948599 | Msa0982260:intron | 15.0% |
| !! | AATAATGAAATGATTAACTA+CGG | + | chr6_4:21949177-21949196 | Msa0982260:intron | 15.0% |
| !!! | CAGACATTTAAAATTAAAAT+TGG | + | chr6_4:21949654-21949673 | Msa0982260:three_prime_UTR | 15.0% |
| !! | CATGAAAAACTTAAATAACA+CGG | - | chr6_4:21947983-21948002 | None:intergenic | 20.0% |
| !! | ATAATACCAATCAAATTTCA+GGG | - | chr6_4:21948204-21948223 | None:intergenic | 20.0% |
| !!! | TGGAATATTGTTATTGTAAA+TGG | + | chr6_4:21948508-21948527 | Msa0982260:intron | 20.0% |
| !! | TTTGCCTATTATTATTATGA+TGG | + | chr6_4:21948574-21948593 | Msa0982260:intron | 20.0% |
| !!! | TAGAGTGAAATTTCTAATTT+TGG | + | chr6_4:21949278-21949297 | Msa0982260:intron | 20.0% |
| !!! | AAAATTAAAATTGGGTCTTT+TGG | + | chr6_4:21949663-21949682 | Msa0982260:three_prime_UTR | 20.0% |
| !! | ATTGCTTGGATATATATAAT+TGG | + | chr6_4:21949934-21949953 | Msa0982260:three_prime_UTR | 20.0% |
| !!! | CAATAGTATTTTAAAAGAGA+AGG | - | chr6_4:21949971-21949990 | None:intergenic | 20.0% |
| !!! | CATGATTAAGTTTTAATTGG+TGG | + | chr6_4:21947999-21948018 | Msa0982260:intron | 25.0% |
| ! | GATAATACCAATCAAATTTC+AGG | - | chr6_4:21948205-21948224 | None:intergenic | 25.0% |
| !! | AATTAGGTTTTTCTATCTGT+TGG | + | chr6_4:21948261-21948280 | Msa0982260:intron | 25.0% |
| ! | TTGGAATGTCAAAATTACAT+AGG | - | chr6_4:21948371-21948390 | None:intergenic | 25.0% |
| ! | AACAATTTAAGGGACTAAAT+TGG | + | chr6_4:21948548-21948567 | Msa0982260:intron | 25.0% |
| ! | AAAACAACATTGATACAAAG+AGG | - | chr6_4:21948673-21948692 | None:intergenic | 25.0% |
| ! | TGATGTTGTTGAACATTTAT+TGG | + | chr6_4:21948717-21948736 | Msa0982260:intron | 25.0% |
| ! | GATGTTGTTGAACATTTATT+GGG | + | chr6_4:21948718-21948737 | Msa0982260:intron | 25.0% |
| ! | TGAACAAATCAAAGCATAAA+AGG | - | chr6_4:21948825-21948844 | None:intergenic | 25.0% |
| ! | CATATTAACTAGCATTAGAT+TGG | - | chr6_4:21948848-21948867 | None:intergenic | 25.0% |
| !!! | AAATATTGGTTAACTTGTCA+GGG | + | chr6_4:21949000-21949019 | Msa0982260:intron | 25.0% |
| ! | AGTCTATAGCTATAAGAAAA+TGG | + | chr6_4:21949207-21949226 | Msa0982260:intron | 25.0% |
| ! | ATTTCACTCTAATCATGAAT+TGG | - | chr6_4:21949269-21949288 | None:intergenic | 25.0% |
| !! | AGTTTTCCTCATATTGATAA+TGG | + | chr6_4:21949301-21949320 | Msa0982260:intron | 25.0% |
| ! | AAAACACCATTATCAATATG+AGG | - | chr6_4:21949310-21949329 | None:intergenic | 25.0% |
| ! | CTTCATATGTTACTGAAATT+TGG | - | chr6_4:21949352-21949371 | None:intergenic | 25.0% |
| ! | CAAATTTCAGTAACATATGA+AGG | + | chr6_4:21949350-21949369 | Msa0982260:intron | 25.0% |
| ! | TCTATCTGGACAATAATAAA+TGG | - | chr6_4:21949395-21949414 | None:intergenic | 25.0% |
| ! | GTTAAATCATCAATATCACT+TGG | + | chr6_4:21949424-21949443 | Msa0982260:intron | 25.0% |
| ! | GTTTAAACACAATTCTAAAC+AGG | - | chr6_4:21949714-21949733 | None:intergenic | 25.0% |
| ! | ATTGTGTTTAAACTCTTTGA+AGG | + | chr6_4:21949721-21949740 | Msa0982260:three_prime_UTR | 25.0% |
| ! | TGTTGAAGATCAATGAATAT+TGG | + | chr6_4:21949750-21949769 | Msa0982260:three_prime_UTR | 25.0% |
| ! | GTTGAAGATCAATGAATATT+GGG | + | chr6_4:21949751-21949770 | Msa0982260:three_prime_UTR | 25.0% |
| ! | TTGAAGATCAATGAATATTG+GGG | + | chr6_4:21949752-21949771 | Msa0982260:three_prime_UTR | 25.0% |
| !! | TGCAATTTGCATCTAAAATT+TGG | + | chr6_4:21949805-21949824 | Msa0982260:three_prime_UTR | 25.0% |
| ! | TATATATCCAAGCAATCAAT+TGG | - | chr6_4:21949930-21949949 | None:intergenic | 25.0% |
| TTTGAAGGTCAGCAAATTAT+GGG | + | chr6_4:21947699-21947718 | Msa0982260:CDS | 30.0% | |
| ! | TTGCAACTTTATCTGGTTTA+GGG | + | chr6_4:21948081-21948100 | Msa0982260:intron | 30.0% |
| TCAAATTTCAGGGATCAAAT+TGG | - | chr6_4:21948194-21948213 | None:intergenic | 30.0% | |
| TTTGATCCCTGAAATTTGAT+TGG | + | chr6_4:21948195-21948214 | Msa0982260:intron | 30.0% | |
| TGTCATGTTAGAAATGCATT+AGG | - | chr6_4:21948408-21948427 | None:intergenic | 30.0% | |
| TTCTAACATGACAAACGTAT+CGG | + | chr6_4:21948415-21948434 | Msa0982260:intron | 30.0% | |
| AGTTAGATTCATCTCTTTGT+TGG | - | chr6_4:21948461-21948480 | None:intergenic | 30.0% | |
| !!! | AATGTTGTTTTCTCTAGTCT+AGG | + | chr6_4:21948682-21948701 | Msa0982260:intron | 30.0% |
| !!! | ATGTTGTTTTCTCTAGTCTA+GGG | + | chr6_4:21948683-21948702 | Msa0982260:intron | 30.0% |
| ! | GAAATAACTAAGAAAGCACA+TGG | - | chr6_4:21948901-21948920 | None:intergenic | 30.0% |
| ! | AGTTATTTCACTCAGATTTC+AGG | + | chr6_4:21948912-21948931 | Msa0982260:intron | 30.0% |
| TATTTCGTATAGAAGTAGGA+TGG | - | chr6_4:21948939-21948958 | None:intergenic | 30.0% | |
| TCACTATTTCGTATAGAAGT+AGG | - | chr6_4:21948943-21948962 | None:intergenic | 30.0% | |
| !! | CAAATATTGGTTAACTTGTC+AGG | + | chr6_4:21948999-21949018 | Msa0982260:intron | 30.0% |
| ATTGAGTTAGAGAAGAACAT+GGG | + | chr6_4:21949138-21949157 | Msa0982260:intron | 30.0% | |
| ! | TGAAATTTGGTCTTTCTCTA+TGG | - | chr6_4:21949339-21949358 | None:intergenic | 30.0% |
| ATTTCAGTAACATATGAAGG+CGG | + | chr6_4:21949353-21949372 | Msa0982260:intron | 30.0% | |
| TTAACAATCACAGTTCTATC+TGG | - | chr6_4:21949409-21949428 | None:intergenic | 30.0% | |
| TGAAGATCAATGAATATTGG+GGG | + | chr6_4:21949753-21949772 | Msa0982260:three_prime_UTR | 30.0% | |
| AGATGCAAATTGCATGAATA+TGG | - | chr6_4:21949799-21949818 | None:intergenic | 30.0% | |
| ! | ATTTGATTTCATTGCTGAGT+TGG | + | chr6_4:21949865-21949884 | Msa0982260:three_prime_UTR | 30.0% |
| ! | ATACAAGACTTGCTTTAGAT+TGG | - | chr6_4:21950065-21950084 | None:intergenic | 30.0% |
| !! | CATAATTTGCTGACCTTCAA+AGG | - | chr6_4:21947700-21947719 | None:intergenic | 35.0% |
| ! | CTTTGAAGGTCAGCAAATTA+TGG | + | chr6_4:21947698-21947717 | Msa0982260:CDS | 35.0% |
| ATTGACCTGACTGAATTTGA+GGG | - | chr6_4:21947874-21947893 | None:intergenic | 35.0% | |
| AATTGACCTGACTGAATTTG+AGG | - | chr6_4:21947875-21947894 | None:intergenic | 35.0% | |
| ! | GTTGCAACTTTATCTGGTTT+AGG | + | chr6_4:21948080-21948099 | Msa0982260:intron | 35.0% |
| !! | GTTAATAGTTTTGCTGTCGT+AGG | + | chr6_4:21948146-21948165 | Msa0982260:intron | 35.0% |
| CTGTCGTAGGATTTCAATAT+TGG | + | chr6_4:21948159-21948178 | Msa0982260:intron | 35.0% | |
| TCATTGTTCATTTGCATGCT+TGG | + | chr6_4:21948313-21948332 | Msa0982260:intron | 35.0% | |
| TTAGGAGCTAAGTGTGTATT+TGG | - | chr6_4:21948390-21948409 | None:intergenic | 35.0% | |
| GATACAAAGAGGAATCTACA+TGG | - | chr6_4:21948662-21948681 | None:intergenic | 35.0% | |
| GTTGTTGAACATTTATTGGG+TGG | + | chr6_4:21948721-21948740 | Msa0982260:intron | 35.0% | |
| GAGAGCAATTTAACAAAACC+AGG | - | chr6_4:21948768-21948787 | None:intergenic | 35.0% | |
| TCACTTCCTTTGCGATAAAA+GGG | - | chr6_4:21948975-21948994 | None:intergenic | 35.0% | |
| TTCACTTCCTTTGCGATAAA+AGG | - | chr6_4:21948976-21948995 | None:intergenic | 35.0% | |
| TTTATCGCAAAGGAAGTGAA+TGG | + | chr6_4:21948976-21948995 | Msa0982260:intron | 35.0% | |
| AGGAAGTGAATGGCAAATAT+TGG | + | chr6_4:21948986-21949005 | Msa0982260:intron | 35.0% | |
| TGCATCACTAAATTCTCGTT+TGG | + | chr6_4:21949075-21949094 | Msa0982260:intron | 35.0% | |
| CTAAATTCTCGTTTGGAAGA+TGG | + | chr6_4:21949082-21949101 | Msa0982260:intron | 35.0% | |
| GATTGAGTTAGAGAAGAACA+TGG | + | chr6_4:21949137-21949156 | Msa0982260:intron | 35.0% | |
| ! | GAGAAGAACATGGGTTAATT+AGG | + | chr6_4:21949147-21949166 | Msa0982260:intron | 35.0% |
| AGCTATAAGAAAATGGTCTG+TGG | + | chr6_4:21949214-21949233 | Msa0982260:intron | 35.0% | |
| ATAAGAAAATGGTCTGTGGT+TGG | + | chr6_4:21949218-21949237 | Msa0982260:intron | 35.0% | |
| TAAGAAAATGGTCTGTGGTT+GGG | + | chr6_4:21949219-21949238 | Msa0982260:intron | 35.0% | |
| TCACTCTAATCATGAATTGG+TGG | - | chr6_4:21949266-21949285 | None:intergenic | 35.0% | |
| CAAGAAATAAGAGCAGGATT+AGG | - | chr6_4:21949478-21949497 | None:intergenic | 35.0% | |
| ACTGATCAAGAAATAAGAGC+AGG | - | chr6_4:21949484-21949503 | None:intergenic | 35.0% | |
| AACACATAATAGCTTCCTTG+CGG | - | chr6_4:21949555-21949574 | None:intergenic | 35.0% | |
| TTCTTCACGCATAGTTCAAA+CGG | - | chr6_4:21949590-21949609 | None:intergenic | 35.0% | |
| ATCCAAGCAATCAATTGGAA+TGG | - | chr6_4:21949925-21949944 | None:intergenic | 35.0% | |
| CAGCGACAATTCAAATTTAG+AGG | + | chr6_4:21950003-21950022 | Msa0982260:three_prime_UTR | 35.0% | |
| ATTATTGCAGTGTCATGCTT+AGG | + | chr6_4:21950102-21950121 | Msa0982260:three_prime_UTR | 35.0% | |
| GCGCTTATTTATAAGAAGCC+AGG | + | chr6_4:21947495-21947514 | Msa0982260:five_prime_UTR | 40.0% | |
| ATTTATAAGAAGCCAGGCCA+AGG | + | chr6_4:21947501-21947520 | Msa0982260:five_prime_UTR | 40.0% | |
| CAGAGAAAGAGATCGTGTTA+CGG | + | chr6_4:21947555-21947574 | Msa0982260:five_prime_UTR | 40.0% | |
| AATGCCTTTGACAATGCGTT+TGG | - | chr6_4:21947600-21947619 | None:intergenic | 40.0% | |
| TCTAGCGTTGCAACTTTATC+TGG | + | chr6_4:21948074-21948093 | Msa0982260:intron | 40.0% | |
| CATTTGCATGCTTGGATTTG+CGG | + | chr6_4:21948321-21948340 | Msa0982260:intron | 40.0% | |
| TGAACATTTATTGGGTGGAG+TGG | + | chr6_4:21948726-21948745 | Msa0982260:intron | 40.0% | |
| GAACATTTATTGGGTGGAGT+GGG | + | chr6_4:21948727-21948746 | Msa0982260:intron | 40.0% | |
| AACATTTATTGGGTGGAGTG+GGG | + | chr6_4:21948728-21948747 | Msa0982260:intron | 40.0% | |
| TTCCTTTGCGATAAAAGGGA+TGG | - | chr6_4:21948971-21948990 | None:intergenic | 40.0% | |
| GAGACTTCAATGTCTAGAGA+TGG | - | chr6_4:21949116-21949135 | None:intergenic | 40.0% | |
| GGGGGTTGAAAACTTTATAC+TGG | + | chr6_4:21949771-21949790 | Msa0982260:three_prime_UTR | 40.0% | |
| !! | ACTTTGTGCTGGCTACATAA+CGG | - | chr6_4:21949895-21949914 | None:intergenic | 40.0% |
| AGCCATTCCAATTGATTGCT+TGG | + | chr6_4:21949920-21949939 | Msa0982260:three_prime_UTR | 40.0% | |
| AGTCTCTCTATCTCACTCCT+TGG | - | chr6_4:21947521-21947540 | None:intergenic | 45.0% | |
| AGAAAGAGATCGTGTTACGG+CGG | + | chr6_4:21947558-21947577 | Msa0982260:five_prime_UTR | 45.0% | |
| GGATCCAAACGCATTGTCAA+AGG | + | chr6_4:21947593-21947612 | Msa0982260:CDS | 45.0% | |
| AGAACCATCTTGGTAGAGAG+TGG | - | chr6_4:21947670-21947689 | None:intergenic | 45.0% | |
| AGGTGAGCATAGAACCATCT+TGG | - | chr6_4:21947680-21947699 | None:intergenic | 45.0% | |
| GGTTCTATGCTCACCTTTGA+AGG | + | chr6_4:21947684-21947703 | Msa0982260:CDS | 45.0% | |
| TAGAGAGAGAGAGAGAGAGA+GGG | - | chr6_4:21947898-21947917 | None:intergenic | 45.0% | |
| TCTCTCTCTCTCTCTCTCTA+GGG | + | chr6_4:21947898-21947917 | Msa0982260:intron | 45.0% | |
| ACATTTATTGGGTGGAGTGG+GGG | + | chr6_4:21948729-21948748 | Msa0982260:intron | 45.0% | |
| AGGCACGTTCTTTCTAGACA+TGG | - | chr6_4:21948805-21948824 | None:intergenic | 45.0% | |
| GCTAGTTAATATGCGCCTTG+TGG | + | chr6_4:21948855-21948874 | Msa0982260:intron | 45.0% | |
| AATATGCGCCTTGTGGTCAA+TGG | + | chr6_4:21948862-21948881 | Msa0982260:intron | 45.0% | |
| TCCAAGAACCATTGACCACA+AGG | - | chr6_4:21948873-21948892 | None:intergenic | 45.0% | |
| ! | GACCATCCCTTTTATCGCAA+AGG | + | chr6_4:21948966-21948985 | Msa0982260:intron | 45.0% |
| CACAACAGACCCTTCAAGAT+GGG | - | chr6_4:21949028-21949047 | None:intergenic | 45.0% | |
| CATCTTGAAGGGTCTGTTGT+GGG | + | chr6_4:21949027-21949046 | Msa0982260:intron | 45.0% | |
| ATCTTGAAGGGTCTGTTGTG+GGG | + | chr6_4:21949028-21949047 | Msa0982260:intron | 45.0% | |
| TGGTTGGGCAATGGGAATTA+GGG | + | chr6_4:21949234-21949253 | Msa0982260:intron | 45.0% | |
| !! | CTTGCGGTGTTGGTATCAAA+TGG | - | chr6_4:21949539-21949558 | None:intergenic | 45.0% |
| CATTTGATACCAACACCGCA+AGG | + | chr6_4:21949537-21949556 | Msa0982260:CDS | 45.0% | |
| TAATAGCTTCCTTGCGGTGT+TGG | - | chr6_4:21949549-21949568 | None:intergenic | 45.0% | |
| !! | CGCATTGTCAAAGGCATTCG+TGG | + | chr6_4:21947602-21947621 | Msa0982260:CDS | 50.0% |
| TGGTAGAGAGTGGCGAGATT+GGG | - | chr6_4:21947660-21947679 | None:intergenic | 50.0% | |
| TTGGTAGAGAGTGGCGAGAT+TGG | - | chr6_4:21947661-21947680 | None:intergenic | 50.0% | |
| AGTGATGGCACTGCTGGAAA+GGG | - | chr6_4:21947758-21947777 | None:intergenic | 50.0% | |
| TTGACAATCGACGGTGGTGA+TGG | - | chr6_4:21947781-21947800 | None:intergenic | 50.0% | |
| AGAAGGTTGACAATCGACGG+TGG | - | chr6_4:21947787-21947806 | None:intergenic | 50.0% | |
| ! | ACCGTCGATTGTCAACCTTC+TGG | + | chr6_4:21947786-21947805 | Msa0982260:CDS | 50.0% |
| GCCAGAAGGTTGACAATCGA+CGG | - | chr6_4:21947790-21947809 | None:intergenic | 50.0% | |
| TGTCAACCTTCTGGCGCTAA+CGG | + | chr6_4:21947795-21947814 | Msa0982260:CDS | 50.0% | |
| GGCATGCTTGTCTTTGTCAG+TGG | + | chr6_4:21947819-21947838 | Msa0982260:CDS | 50.0% | |
| ACACGCCCTCAAATTCAGTC+AGG | + | chr6_4:21947866-21947885 | Msa0982260:CDS | 50.0% | |
| CTAGAGAGAGAGAGAGAGAG+AGG | - | chr6_4:21947899-21947918 | None:intergenic | 50.0% | |
| CTCTCTCTCTCTCTCTCTCT+AGG | + | chr6_4:21947897-21947916 | Msa0982260:intron | 50.0% | |
| GCTTGGATTTGCGGTGAGTT+TGG | + | chr6_4:21948330-21948349 | Msa0982260:intron | 50.0% | |
| GCCTTGTGGTCAATGGTTCT+TGG | + | chr6_4:21948869-21948888 | Msa0982260:intron | 50.0% | |
| CCACAACAGACCCTTCAAGA+TGG | - | chr6_4:21949029-21949048 | None:intergenic | 50.0% | |
| CCATCTTGAAGGGTCTGTTG+TGG | + | chr6_4:21949026-21949045 | Msa0982260:intron | 50.0% | |
| TCTTGAAGGGTCTGTTGTGG+GGG | + | chr6_4:21949029-21949048 | Msa0982260:intron | 50.0% | |
| AATGGTCTGTGGTTGGGCAA+TGG | + | chr6_4:21949225-21949244 | Msa0982260:intron | 50.0% | |
| ATGGTCTGTGGTTGGGCAAT+GGG | + | chr6_4:21949226-21949245 | Msa0982260:intron | 50.0% | |
| GTGGTTGGGCAATGGGAATT+AGG | + | chr6_4:21949233-21949252 | Msa0982260:intron | 50.0% | |
| ATGGCTAGCACACTTTGTGC+TGG | - | chr6_4:21949906-21949925 | None:intergenic | 50.0% | |
| CTCTATCTCACTCCTTGGCC+TGG | - | chr6_4:21947516-21947535 | None:intergenic | 55.0% | |
| !! | ATTGGGACGGTTGGTGTCGA+AGG | - | chr6_4:21947643-21947662 | None:intergenic | 55.0% |
| AGAGAGTGGCGAGATTGGGA+CGG | - | chr6_4:21947656-21947675 | None:intergenic | 55.0% | |
| CTCGCCACTCTCTACCAAGA+TGG | + | chr6_4:21947663-21947682 | Msa0982260:CDS | 55.0% | |
| GAGTGATGGCACTGCTGGAA+AGG | - | chr6_4:21947759-21947778 | None:intergenic | 55.0% | |
| TGATGGAGTGATGGCACTGC+TGG | - | chr6_4:21947764-21947783 | None:intergenic | 55.0% | |
| AGTGGTAATCTCCAGCTCGC+CGG | + | chr6_4:21947837-21947856 | Msa0982260:CDS | 55.0% | |
| ! | TTTGAGGGCGTGTTGTTCGC+CGG | - | chr6_4:21947859-21947878 | None:intergenic | 55.0% |
| !! | TGGAGTGGGGGAAGTGTTTG+TGG | + | chr6_4:21948741-21948760 | Msa0982260:intron | 55.0% |
| ! | TGTCAGGGCACCCATCTTGA+AGG | + | chr6_4:21949015-21949034 | Msa0982260:intron | 55.0% |
| ! | GTCAGGGCACCCATCTTGAA+GGG | + | chr6_4:21949016-21949035 | Msa0982260:intron | 55.0% |
| CTTGAAGGGTCTGTTGTGGG+GGG | + | chr6_4:21949030-21949049 | Msa0982260:intron | 55.0% | |
| TTGAAGGGTCTGTTGTGGGG+GGG | + | chr6_4:21949031-21949050 | Msa0982260:intron | 55.0% | |
| TTACGGCGGCGTAAGAGCGA+TGG | + | chr6_4:21947572-21947591 | Msa0982260:exon | 60.0% | |
| AGTGGCGAGATTGGGACGGT+TGG | - | chr6_4:21947652-21947671 | None:intergenic | 60.0% | |
| !! | CGACGGTGGTGATGGAGTGA+TGG | - | chr6_4:21947773-21947792 | None:intergenic | 60.0% |
| CAACCTTCTGGCGCTAACGG+CGG | + | chr6_4:21947798-21947817 | Msa0982260:CDS | 60.0% | |
| !! | GGGGGAAGTGTTTGTGGTCC+TGG | + | chr6_4:21948747-21948766 | Msa0982260:intron | 60.0% |
| TGAAGGGTCTGTTGTGGGGG+GGG | + | chr6_4:21949032-21949051 | Msa0982260:intron | 60.0% | |
| !! | GGGACGGTTGGTGTCGAAGG+TGG | - | chr6_4:21947640-21947659 | None:intergenic | 65.0% |
| ATGCCGCCGTTAGCGCCAGA+AGG | - | chr6_4:21947804-21947823 | None:intergenic | 65.0% | |
| GAAGGGTCTGTTGTGGGGGG+GGG | + | chr6_4:21949033-21949052 | Msa0982260:intron | 65.0% | |
| AAGGGTCTGTTGTGGGGGGG+GGG | + | chr6_4:21949034-21949053 | Msa0982260:intron | 65.0% | |
| ! | CGTGTTGTTCGCCGGCGAGC+TGG | - | chr6_4:21947851-21947870 | None:intergenic | 70.0% |
| AGGGTCTGTTGTGGGGGGGG+GGG | + | chr6_4:21949035-21949054 | Msa0982260:intron | 70.0% | |
| GGGTCTGTTGTGGGGGGGGG+GGG | + | chr6_4:21949036-21949055 | Msa0982260:intron | 75.0% | |
| GGTCTGTTGTGGGGGGGGGG+GGG | + | chr6_4:21949037-21949056 | Msa0982260:intron | 75.0% | |
| GTCTGTTGTGGGGGGGGGGG+GGG | + | chr6_4:21949038-21949057 | Msa0982260:intron | 75.0% | |
| TCTGTTGTGGGGGGGGGGGG+GGG | + | chr6_4:21949039-21949058 | Msa0982260:intron | 75.0% | |
| ! | CTGTTGTGGGGGGGGGGGGG+GGG | + | chr6_4:21949040-21949059 | Msa0982260:intron | 80.0% |
| ! | TGTTGTGGGGGGGGGGGGGG+GGG | + | chr6_4:21949041-21949060 | Msa0982260:intron | 80.0% |
| ! | GTTGTGGGGGGGGGGGGGGG+GGG | + | chr6_4:21949042-21949061 | Msa0982260:intron | 85.0% |
| ! | TTGTGGGGGGGGGGGGGGGG+GGG | + | chr6_4:21949043-21949062 | Msa0982260:intron | 85.0% |
| ! | TGTGGGGGGGGGGGGGGGGG+GGG | + | chr6_4:21949044-21949063 | Msa0982260:intron | 90.0% |
| ! | GTGGGGGGGGGGGGGGGGGG+GGG | + | chr6_4:21949045-21949064 | Msa0982260:intron | 95.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | + | chr6_4:21949046-21949065 | Msa0982260:intron | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 21947421 | 21950152 | 21947421 | ID=Msa0982260;Name=Msa0982260 |
| chr6_4 | mRNA | 21947421 | 21950152 | 21947421 | ID=Msa0982260-mRNA-1;Parent=Msa0982260;Name=Msa0982260-mRNA-1;_AED=0.02;_eAED=0.02;_QI=170|1|1|1|1|1|2|547|123 |
| chr6_4 | exon | 21947421 | 21947887 | 21947421 | ID=Msa0982260-mRNA-1:exon:6839;Parent=Msa0982260-mRNA-1 |
| chr6_4 | exon | 21949531 | 21950152 | 21949531 | ID=Msa0982260-mRNA-1:exon:6840;Parent=Msa0982260-mRNA-1 |
| chr6_4 | five_prime_UTR | 21947421 | 21947590 | 21947421 | ID=Msa0982260-mRNA-1:five_prime_utr;Parent=Msa0982260-mRNA-1 |
| chr6_4 | CDS | 21947591 | 21947887 | 21947591 | ID=Msa0982260-mRNA-1:cds;Parent=Msa0982260-mRNA-1 |
| chr6_4 | CDS | 21949531 | 21949605 | 21949531 | ID=Msa0982260-mRNA-1:cds;Parent=Msa0982260-mRNA-1 |
| chr6_4 | three_prime_UTR | 21949606 | 21950152 | 21949606 | ID=Msa0982260-mRNA-1:three_prime_utr;Parent=Msa0982260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
