Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0938120 | XP_024641978.2 | 88.674 | 724 | 76 | 3 | 13 | 733 | 11 | 731 | 0.0 | 1276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036870 | Msa0938120 | 0.814855 | 1.245626e-51 | -8.615850e-47 |
| Msa0081520 | Msa0938120 | 0.803122 | 4.052304e-49 | -8.615850e-47 |
| Msa0090400 | Msa0938120 | 0.801911 | 7.200173e-49 | -8.615850e-47 |
| Msa0626450 | Msa0938120 | 0.829224 | 5.803323e-55 | -8.615850e-47 |
| Msa0626490 | Msa0938120 | 0.831538 | 1.577271e-55 | -8.615850e-47 |
| Msa0664600 | Msa0938120 | 0.829459 | 5.088421e-55 | -8.615850e-47 |
| Msa0795870 | Msa0938120 | 0.809115 | 2.219021e-50 | -8.615850e-47 |
| Msa0833650 | Msa0938120 | 0.804698 | 1.906257e-49 | -8.615850e-47 |
| Msa0835490 | Msa0938120 | 0.800985 | 1.114730e-48 | -8.615850e-47 |
| Msa0136650 | Msa0938120 | 0.820173 | 7.890164e-53 | -8.615850e-47 |
| Msa0146040 | Msa0938120 | 0.802521 | 5.393370e-49 | -8.615850e-47 |
| Msa0174450 | Msa0938120 | 0.815919 | 7.221199e-52 | -8.615850e-47 |
| Msa0178560 | Msa0938120 | 0.813604 | 2.352917e-51 | -8.615850e-47 |
| Msa0380620 | Msa0938120 | 0.807055 | 6.092377e-50 | -8.615850e-47 |
| Msa0430260 | Msa0938120 | 0.824128 | 9.545401e-54 | -8.615850e-47 |
| Msa0465410 | Msa0938120 | 0.815735 | 7.936894e-52 | -8.615850e-47 |
| Msa0467490 | Msa0938120 | 0.816916 | 4.320430e-52 | -8.615850e-47 |
| Msa0255090 | Msa0938120 | 0.822194 | 2.699383e-53 | -8.615850e-47 |
| Msa0259380 | Msa0938120 | 0.831846 | 1.324033e-55 | -8.615850e-47 |
| Msa0267110 | Msa0938120 | 0.804154 | 2.475154e-49 | -8.615850e-47 |
| Msa0292400 | Msa0938120 | 0.836618 | 8.419813e-57 | -8.615850e-47 |
| Msa0511270 | Msa0938120 | 0.814681 | 1.361132e-51 | -8.615850e-47 |
| Msa0569200 | Msa0938120 | 0.819277 | 1.263903e-52 | -8.615850e-47 |
| Msa0580370 | Msa0938120 | 0.810054 | 1.394878e-50 | -8.615850e-47 |
| Msa0582450 | Msa0938120 | 0.807613 | 4.639524e-50 | -8.615850e-47 |
| Msa0586190 | Msa0938120 | 0.807825 | 4.182956e-50 | -8.615850e-47 |
| Msa0872830 | Msa0938120 | 0.874852 | 4.884486e-68 | -8.615850e-47 |
| Msa0906130 | Msa0938120 | 0.838108 | 3.497115e-57 | -8.615850e-47 |
| Msa0938120 | Msa0945110 | 0.819854 | 9.330467e-53 | -8.615850e-47 |
| Msa0938120 | Msa0975300 | 0.871941 | 4.656464e-67 | -8.615850e-47 |
| Msa0938120 | Msa0981320 | 0.812356 | 4.417147e-51 | -8.615850e-47 |
| Msa0938120 | Msa1018690 | 0.807449 | 5.027255e-50 | -8.615850e-47 |
| Msa0938120 | Msa1020510 | 0.804709 | 1.896169e-49 | -8.615850e-47 |
| Msa0938120 | Msa1020670 | 0.820028 | 8.515842e-53 | -8.615850e-47 |
| Msa0938120 | Msa1045140 | 0.840734 | 7.273691e-58 | -8.615850e-47 |
| Msa0938120 | Msa1113340 | 0.827163 | 1.820398e-54 | -8.615850e-47 |
| Msa0938120 | Msa1116220 | 0.801621 | 8.257056e-49 | -8.615850e-47 |
| Msa0938120 | Msa1132840 | 0.809390 | 1.937243e-50 | -8.615850e-47 |
| Msa0938120 | Msa1140210 | 0.802951 | 4.396619e-49 | -8.615850e-47 |
| Msa0938120 | Msa1171710 | 0.808915 | 2.449589e-50 | -8.615850e-47 |
| Msa0938120 | Msa1269480 | 0.801520 | 8.661459e-49 | -8.615850e-47 |
| Msa0938120 | Msa1282260 | 0.805332 | 1.404619e-49 | -8.615850e-47 |
| Msa0938120 | Msa1321340 | 0.814516 | 1.480448e-51 | -8.615850e-47 |
| Msa0938120 | Msa1331230 | 0.810050 | 1.397370e-50 | -8.615850e-47 |
| Msa0938120 | Msa1348090 | 0.801818 | 7.524946e-49 | -8.615850e-47 |
| Msa0938120 | Msa1372230 | 0.805687 | 1.183592e-49 | -8.615850e-47 |
| Msa0938120 | Msa1440960 | 0.825152 | 5.478293e-54 | -8.615850e-47 |
| Msa0938120 | Msa1454140 | 0.828147 | 1.056414e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0938120 | MtrunA17_Chr6g0454041 | 88.674 | 724 | 76 | 3 | 13 | 733 | 13 | 733 | 0.0 | 1275 |
| Msa0938120 | MtrunA17_Chr6g0454051 | 63.885 | 695 | 226 | 7 | 44 | 729 | 1 | 679 | 0.0 | 863 |
| Msa0938120 | MtrunA17_Chr6g0454061 | 61.741 | 609 | 222 | 6 | 110 | 708 | 2 | 609 | 0.0 | 729 |
| Msa0938120 | MtrunA17_Chr6g0455641 | 60.164 | 610 | 223 | 7 | 110 | 708 | 7 | 607 | 0.0 | 690 |
| Msa0938120 | MtrunA17_Chr2g0302451 | 30.200 | 649 | 378 | 11 | 82 | 661 | 149 | 791 | 4.13e-85 | 288 |
| Msa0938120 | MtrunA17_Chr3g0126261 | 28.253 | 538 | 365 | 10 | 177 | 701 | 17 | 546 | 3.58e-66 | 229 |
| Msa0938120 | MtrunA17_Chr3g0112101 | 31.041 | 509 | 332 | 8 | 182 | 678 | 203 | 704 | 1.78e-64 | 229 |
| Msa0938120 | MtrunA17_Chr6g0476101 | 36.434 | 258 | 158 | 2 | 286 | 540 | 7 | 261 | 2.39e-44 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0938120 | AT3G17450.2 | 29.032 | 651 | 385 | 13 | 82 | 663 | 149 | 791 | 1.17e-81 | 278 |
| Msa0938120 | AT3G17450.1 | 29.032 | 651 | 385 | 13 | 82 | 663 | 149 | 791 | 1.17e-81 | 278 |
| Msa0938120 | AT4G15020.2 | 32.394 | 497 | 324 | 7 | 182 | 672 | 197 | 687 | 4.61e-77 | 263 |
| Msa0938120 | AT4G15020.1 | 32.394 | 497 | 324 | 7 | 182 | 672 | 197 | 687 | 4.61e-77 | 263 |
| Msa0938120 | AT3G22220.3 | 31.546 | 485 | 316 | 8 | 182 | 659 | 193 | 668 | 8.56e-73 | 252 |
| Msa0938120 | AT3G22220.4 | 31.546 | 485 | 316 | 8 | 182 | 659 | 193 | 668 | 8.56e-73 | 252 |
| Msa0938120 | AT3G22220.2 | 31.546 | 485 | 316 | 8 | 182 | 659 | 193 | 668 | 8.56e-73 | 252 |
| Msa0938120 | AT3G22220.1 | 31.546 | 485 | 316 | 8 | 182 | 659 | 193 | 668 | 8.56e-73 | 252 |
| Msa0938120 | AT1G79740.1 | 27.517 | 596 | 400 | 11 | 75 | 661 | 14 | 586 | 1.47e-64 | 227 |
| Msa0938120 | AT1G79740.4 | 27.517 | 596 | 400 | 11 | 75 | 661 | 14 | 586 | 1.47e-64 | 227 |
| Msa0938120 | AT3G13020.1 | 27.899 | 595 | 366 | 16 | 65 | 629 | 8 | 569 | 2.70e-56 | 203 |
| Msa0938120 | AT1G79740.3 | 28.942 | 463 | 311 | 7 | 205 | 660 | 1 | 452 | 5.28e-56 | 200 |
| Msa0938120 | AT1G79740.2 | 28.942 | 463 | 311 | 7 | 205 | 660 | 1 | 452 | 5.28e-56 | 200 |
| Msa0938120 | AT5G33406.1 | 36.458 | 288 | 170 | 5 | 383 | 662 | 1 | 283 | 2.18e-48 | 179 |
| Msa0938120 | AT3G13030.3 | 25.974 | 539 | 364 | 13 | 140 | 663 | 14 | 532 | 4.08e-47 | 176 |
| Msa0938120 | AT3G13030.4 | 25.974 | 539 | 364 | 13 | 140 | 663 | 14 | 532 | 4.08e-47 | 176 |
| Msa0938120 | AT3G13030.1 | 25.974 | 539 | 364 | 13 | 140 | 663 | 14 | 532 | 4.08e-47 | 176 |
| Msa0938120 | AT3G13030.2 | 25.974 | 539 | 364 | 13 | 140 | 663 | 14 | 532 | 4.08e-47 | 176 |
| Msa0938120 | AT3G13030.5 | 24.861 | 539 | 337 | 14 | 140 | 663 | 14 | 499 | 1.40e-39 | 153 |
| Msa0938120 | AT3G13010.1 | 26.243 | 503 | 322 | 13 | 160 | 643 | 73 | 545 | 1.44e-39 | 154 |
| Msa0938120 | AT1G43260.1 | 28.270 | 237 | 169 | 1 | 183 | 418 | 39 | 275 | 1.16e-30 | 122 |
| Msa0938120 | AT1G36095.1 | 32.515 | 163 | 110 | 0 | 289 | 451 | 135 | 297 | 8.38e-22 | 97.1 |
| Msa0938120 | AT5G31412.1 | 36.667 | 120 | 74 | 1 | 239 | 358 | 123 | 240 | 7.74e-18 | 87.4 |
Find 164 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACAAAAGGAATATATATT+TGG | 0.177889 | 6_3:+9839271 | Msa0938120:CDS |
| TGCTTGACAGGCAGTTCTTA+TGG | 0.234168 | 6_3:+9840074 | Msa0938120:CDS |
| CCACCGAGTTTCTTTGATAT+TGG | 0.236160 | 6_3:+9838763 | Msa0938120:CDS |
| CGATTTGCATGTCACTTAAC+TGG | 0.262528 | 6_3:+9838400 | Msa0938120:CDS |
| TTCTCTTTCTTTGTCATCTT+CGG | 0.294307 | 6_3:-9839604 | None:intergenic |
| GGAATATATATTTGGAAAGT+TGG | 0.296758 | 6_3:+9839279 | Msa0938120:CDS |
| AAGATGGTGTTGGGAGGAAT+AGG | 0.307959 | 6_3:+9838554 | Msa0938120:CDS |
| AGACACGAATTGCGAAATTC+TGG | 0.317559 | 6_3:-9840049 | None:intergenic |
| AGATGGAGATGAAAATTAAA+TGG | 0.324022 | 6_3:+9840493 | Msa0938120:exon |
| GCTTGACAGGCAGTTCTTAT+GGG | 0.335207 | 6_3:+9840075 | Msa0938120:CDS |
| GCGAAAGATGCCCACCAAAT+TGG | 0.338113 | 6_3:-9840008 | None:intergenic |
| TCAATCCTAGATCTTTCTTC+AGG | 0.346866 | 6_3:-9839903 | None:intergenic |
| AATGTTATGATTTGTTATAA+AGG | 0.347513 | 6_3:+9839468 | Msa0938120:CDS |
| TTCGTCAACTTAATATCTTC+CGG | 0.365017 | 6_3:-9838799 | None:intergenic |
| TAAGTTGACGAATGAAGTTT+TGG | 0.365868 | 6_3:+9838810 | Msa0938120:CDS |
| GTGAGGAGACTCCACCAATT+TGG | 0.368292 | 6_3:+9839994 | Msa0938120:CDS |
| AACCATGGGTTTCATTTATG+AGG | 0.373668 | 6_3:+9839542 | Msa0938120:CDS |
| CAAGTTTAGTATGTTCCTCT+TGG | 0.377450 | 6_3:-9838899 | None:intergenic |
| CCAGCAGTAATTACGGCTAT+TGG | 0.383693 | 6_3:-9839972 | None:intergenic |
| ATAAGTGTCGCTTTGTGAAT+AGG | 0.390766 | 6_3:-9839183 | None:intergenic |
| TTGCATGATGAAAATGCTAA+TGG | 0.391658 | 6_3:+9840416 | Msa0938120:CDS |
| AGAATCCTCTGAATAAATAA+AGG | 0.394912 | 6_3:-9839226 | None:intergenic |
| CCAGCGGCAGCTACATAGTA+TGG | 0.400600 | 6_3:-9839072 | None:intergenic |
| TATTCACAAAGCGACACTTA+TGG | 0.406837 | 6_3:+9839185 | Msa0938120:CDS |
| CAATGCTATACCAGTTGAAA+TGG | 0.411595 | 6_3:+9838678 | Msa0938120:CDS |
| CCTAGATCTTTCTTCAGGAT+TGG | 0.411662 | 6_3:-9839898 | None:intergenic |
| TCTTCATCAGTTGGCATTGT+CGG | 0.412821 | 6_3:+9837864 | Msa0938120:CDS |
| AGATGTGGATGCCTCGGATT+CGG | 0.414989 | 6_3:+9840349 | Msa0938120:CDS |
| CTCCTCACCAGCAGTAATTA+CGG | 0.416080 | 6_3:-9839979 | None:intergenic |
| CGAAAAGGACTAGGCTGTAT+TGG | 0.416184 | 6_3:+9839106 | Msa0938120:CDS |
| TATACTTGAAGTGCTTCGTT+TGG | 0.418435 | 6_3:+9839500 | Msa0938120:CDS |
| ATGACGTTGTTGAAGAGGTT+GGG | 0.419356 | 6_3:+9839013 | Msa0938120:CDS |
| TATTGTGATAATGTTGTAAC+CGG | 0.423761 | 6_3:+9838367 | Msa0938120:CDS |
| ACTTCTTCTTCTTCATCAGT+TGG | 0.426488 | 6_3:+9837855 | Msa0938120:CDS |
| ATGCTTATATGGCAAATCAT+TGG | 0.427519 | 6_3:+9839744 | Msa0938120:CDS |
| CGAGTTTCTTTGATATTGGA+TGG | 0.429120 | 6_3:+9838767 | Msa0938120:CDS |
| CATTGCCCTTTGCATGCTGC+AGG | 0.435557 | 6_3:+9839780 | Msa0938120:CDS |
| GAGTTCGCAAAGACGATGAA+TGG | 0.442280 | 6_3:+9839402 | Msa0938120:CDS |
| ATTGATGAGGAAGGGTATGT+TGG | 0.449576 | 6_3:+9838505 | Msa0938120:CDS |
| GATCACTGGTTGCAGCATAA+TGG | 0.450076 | 6_3:+9838855 | Msa0938120:CDS |
| TCACTTTCTACCATTTCAAC+TGG | 0.450413 | 6_3:-9838688 | None:intergenic |
| CCAATCCTGAAGAAAGATCT+AGG | 0.450590 | 6_3:+9839898 | Msa0938120:CDS |
| CCATACTATGTAGCTGCCGC+TGG | 0.452127 | 6_3:+9839072 | Msa0938120:CDS |
| AAGTTTAGTATGTTCCTCTT+GGG | 0.452190 | 6_3:-9838898 | None:intergenic |
| GTTTAAGACTATGTGTGATT+TGG | 0.454973 | 6_3:+9838714 | Msa0938120:CDS |
| ACAAGACTCCGTCGATAGTA+AGG | 0.456125 | 6_3:+9838606 | Msa0938120:CDS |
| TGCATGATGAAAATGCTAAT+GGG | 0.456134 | 6_3:+9840417 | Msa0938120:CDS |
| CCAGGACTATAGTGAAATTG+AGG | 0.464932 | 6_3:-9839816 | None:intergenic |
| CATCGTCTTTGCGAACTCGC+TGG | 0.467375 | 6_3:-9839397 | None:intergenic |
| CCTCAATTTCACTATAGTCC+TGG | 0.468188 | 6_3:+9839816 | Msa0938120:CDS |
| TGAGAAACTCTTTAAGATGA+TGG | 0.471735 | 6_3:+9838990 | Msa0938120:CDS |
| AAAAGAAAAGGCGGTAAAGA+TGG | 0.472289 | 6_3:+9838538 | Msa0938120:CDS |
| GATAGTTTCAAGAGAAAGAG+AGG | 0.479404 | 6_3:+9838577 | Msa0938120:CDS |
| AAACGAAGCACTTCAAGTAT+AGG | 0.486852 | 6_3:-9839498 | None:intergenic |
| CTTGACAGGCAGTTCTTATG+GGG | 0.488717 | 6_3:+9840076 | Msa0938120:CDS |
| GAGCTGCTGCTCCAATGTGT+TGG | 0.491605 | 6_3:-9837805 | None:intergenic |
| GCAAACACTACACTGAACTT+AGG | 0.493453 | 6_3:-9840664 | None:intergenic |
| CTAATGTCATCTCTAAATCC+AGG | 0.494853 | 6_3:-9839834 | None:intergenic |
| ATTCGTGTCTTATGCTTGAC+AGG | 0.495931 | 6_3:+9840062 | Msa0938120:CDS |
| GATGCCAATGGAGACGTTGA+AGG | 0.503971 | 6_3:+9840323 | Msa0938120:CDS |
| TAAGGAGAGTTTGAGTGAGG+AGG | 0.505132 | 6_3:+9838624 | Msa0938120:CDS |
| TGTTGATGGCGAAAAGGACT+AGG | 0.505339 | 6_3:+9839097 | Msa0938120:CDS |
| AAGGCGGTAAAGATGGTGTT+GGG | 0.505881 | 6_3:+9838545 | Msa0938120:CDS |
| AGATGGTGTTGGGAGGAATA+GGG | 0.506593 | 6_3:+9838555 | Msa0938120:CDS |
| TGTGTTGTATGAACAGTGCT+TGG | 0.509152 | 6_3:-9837896 | None:intergenic |
| CTGAAGTGTCTAGCTGATGC+GGG | 0.510022 | 6_3:+9840383 | Msa0938120:CDS |
| TGAACCTTCAACGTCTCCAT+TGG | 0.513051 | 6_3:-9840327 | None:intergenic |
| GGTACACGCTATGAATTTGA+AGG | 0.513715 | 6_3:+9840214 | Msa0938120:intron |
| AATATCCTGCAGCATGCAAA+GGG | 0.513850 | 6_3:-9839785 | None:intergenic |
| CTGGGATGTTGATGGCGAAA+AGG | 0.516498 | 6_3:+9839091 | Msa0938120:CDS |
| GGCAATGGTGAAAGCTATAG+AGG | 0.516764 | 6_3:+9839563 | Msa0938120:CDS |
| TCACTTGATCTTAAACTACA+TGG | 0.517326 | 6_3:+9838322 | Msa0938120:CDS |
| CCTTGTGCAACACATTGCAT+TGG | 0.517858 | 6_3:+9839132 | Msa0938120:CDS |
| GATGACGTTGTTGAAGAGGT+TGG | 0.518847 | 6_3:+9839012 | Msa0938120:CDS |
| GGGTTTCATTTATGAGGCAA+TGG | 0.521666 | 6_3:+9839548 | Msa0938120:CDS |
| CTATTGCTACTCTTCACAAA+AGG | 0.525485 | 6_3:+9839258 | Msa0938120:CDS |
| TACAACACACAACACAAACA+TGG | 0.527306 | 6_3:+9837910 | Msa0938120:CDS |
| TTTATTCAGAGGATTCTCTC+AGG | 0.527532 | 6_3:+9839232 | Msa0938120:CDS |
| AGCTGCCGCTGGGATGTTGA+TGG | 0.527540 | 6_3:+9839083 | Msa0938120:CDS |
| AGTTCGCAAAGACGATGAAT+GGG | 0.528816 | 6_3:+9839403 | Msa0938120:CDS |
| GATGGATATGAAGACGAAGA+TGG | 0.530094 | 6_3:+9840476 | Msa0938120:CDS |
| CTGCAGCATGCAAAGGGCAA+TGG | 0.530815 | 6_3:-9839779 | None:intergenic |
| TGAGGTGAAGAAGGAAATGT+TGG | 0.531481 | 6_3:+9838459 | Msa0938120:CDS |
| AAGATGACAAAGAAAGAGAA+AGG | 0.531896 | 6_3:+9839607 | Msa0938120:CDS |
| TATTGATGCGTCTGATATGT+TGG | 0.533209 | 6_3:+9838960 | Msa0938120:CDS |
| GATAAGAATGTTCAAATCCA+AGG | 0.533224 | 6_3:+9839365 | Msa0938120:CDS |
| TGTATCCTTTATTTATTCAG+AGG | 0.536433 | 6_3:+9839221 | Msa0938120:CDS |
| CCAATAGCCGTAATTACTGC+TGG | 0.537059 | 6_3:+9839972 | Msa0938120:CDS |
| GGCAAATCATTGGTGGGACA+TGG | 0.539397 | 6_3:+9839754 | Msa0938120:CDS |
| TAGTAAGGAGAGTTTGAGTG+AGG | 0.540366 | 6_3:+9838621 | Msa0938120:CDS |
| TTGTTAGTGAACAGTCCAAA+GGG | 0.540672 | 6_3:+9838919 | Msa0938120:CDS |
| TGCATGTCACTTAACTGGAA+AGG | 0.541872 | 6_3:+9838405 | Msa0938120:CDS |
| CAGGACTATAGTGAAATTGA+GGG | 0.542010 | 6_3:-9839815 | None:intergenic |
| AAAGGCGGTAAAGATGGTGT+TGG | 0.542026 | 6_3:+9838544 | Msa0938120:CDS |
| TGACGTTGTTGAAGAGGTTG+GGG | 0.542773 | 6_3:+9839014 | Msa0938120:CDS |
| CTCATCAATCTCTTTCAAAG+TGG | 0.542859 | 6_3:-9838491 | None:intergenic |
| AAAGATGCCCACCAAATTGG+TGG | 0.543579 | 6_3:-9840005 | None:intergenic |
| TGAAAGAGATTGATGAGGAA+GGG | 0.546714 | 6_3:+9838497 | Msa0938120:CDS |
| GTGATAATGTTGTAACCGGC+GGG | 0.546780 | 6_3:+9838371 | Msa0938120:CDS |
| ATGAAGATGGTCCAACACAT+TGG | 0.547613 | 6_3:+9837794 | None:intergenic |
| CTTATATGGCAAATCATTGG+TGG | 0.550934 | 6_3:+9839747 | Msa0938120:CDS |
| GGCAAAATATGTTGTTGAAG+TGG | 0.552303 | 6_3:+9838282 | Msa0938120:CDS |
| GATGACGATGGAGATGAAGA+TGG | 0.552380 | 6_3:+9840458 | Msa0938120:CDS |
| AGGTTCAGATGTGGATGCCT+CGG | 0.552820 | 6_3:+9840343 | Msa0938120:CDS |
| TGTTGGTGATGAGGTGAAGA+AGG | 0.557137 | 6_3:+9838450 | Msa0938120:CDS |
| TGTATGAACAGTGCTTGGTT+CGG | 0.557846 | 6_3:-9837891 | None:intergenic |
| TGGGAAATACATTGAGGATG+CGG | 0.557967 | 6_3:+9839422 | Msa0938120:CDS |
| TTGTGAGGGTGTTGGTGATG+AGG | 0.559046 | 6_3:+9838441 | Msa0938120:CDS |
| TTGAAAGAGATTGATGAGGA+AGG | 0.560201 | 6_3:+9838496 | Msa0938120:CDS |
| AGGCATGTCGAGCGGTTGCA+AGG | 0.561168 | 6_3:+9838644 | Msa0938120:CDS |
| AGAGCTATGTGGAAGATCAC+TGG | 0.561392 | 6_3:+9838841 | Msa0938120:CDS |
| AGGAGACTCCACCAATTTGG+TGG | 0.563322 | 6_3:+9839997 | Msa0938120:CDS |
| AAATATCCTGCAGCATGCAA+AGG | 0.563551 | 6_3:-9839786 | None:intergenic |
| GTTGAAGCTTGTGAGGGTGT+TGG | 0.568205 | 6_3:+9838433 | Msa0938120:CDS |
| TAATCGGAAGGCCTTCGAGA+TGG | 0.573794 | 6_3:+9840106 | Msa0938120:CDS |
| TCATAAATGAAACCCATGGT+TGG | 0.578573 | 6_3:-9839540 | None:intergenic |
| AAATGTTGTCCATGTTGTAA+CGG | 0.579800 | 6_3:+9839041 | Msa0938120:CDS |
| TTATCATCTTACCATCTCGA+AGG | 0.581219 | 6_3:-9840117 | None:intergenic |
| TTGGTTTCAAGACATGGCGT+AGG | 0.585999 | 6_3:+9838733 | Msa0938120:CDS |
| GTGTATATTCCGTTACAACA+TGG | 0.586670 | 6_3:-9839050 | None:intergenic |
| GATGGATGACGTTGTTGAAG+AGG | 0.589606 | 6_3:+9839008 | Msa0938120:CDS |
| TGTGATAATGTTGTAACCGG+CGG | 0.592762 | 6_3:+9838370 | Msa0938120:CDS |
| GAATGTTCAAATCCAAGGAG+TGG | 0.592797 | 6_3:+9839370 | Msa0938120:CDS |
| GAGCTAAATCTTGATGCCAA+TGG | 0.595617 | 6_3:+9840311 | Msa0938120:CDS |
| TGTTGTCTTCATGAGAACAA+AGG | 0.597006 | 6_3:+9839336 | Msa0938120:CDS |
| GAGGAAGGGTATGTTGGAGT+AGG | 0.602936 | 6_3:+9838511 | Msa0938120:CDS |
| TGTGATTTGGTTTCAAGACA+TGG | 0.603629 | 6_3:+9838727 | Msa0938120:CDS |
| CTTGTTAGTGAACAGTCCAA+AGG | 0.605024 | 6_3:+9838918 | Msa0938120:CDS |
| GAATGATGCTGCAACACTGT+GGG | 0.607626 | 6_3:+9839154 | Msa0938120:CDS |
| TCTGAAGTGTCTAGCTGATG+CGG | 0.607819 | 6_3:+9840382 | Msa0938120:CDS |
| AGCCGTAATTACTGCTGGTG+AGG | 0.609038 | 6_3:+9839977 | Msa0938120:CDS |
| GATGAATGGGAAATACATTG+AGG | 0.609052 | 6_3:+9839416 | Msa0938120:CDS |
| CATCCAATATCAAAGAAACT+CGG | 0.610975 | 6_3:-9838766 | None:intergenic |
| CATACTATGTAGCTGCCGCT+GGG | 0.612870 | 6_3:+9839073 | Msa0938120:CDS |
| TGGAAGAACATAGAGCTATG+TGG | 0.616519 | 6_3:+9838830 | Msa0938120:CDS |
| CACTTTGAAAGAGATTGATG+AGG | 0.617752 | 6_3:+9838492 | Msa0938120:CDS |
| ACAACACACAACACAAACAT+GGG | 0.618409 | 6_3:+9837911 | Msa0938120:CDS |
| GGAAAATGTTGAAGCTTGTG+AGG | 0.619175 | 6_3:+9838426 | Msa0938120:CDS |
| GAGTGAGGAGGCATGTCGAG+CGG | 0.620889 | 6_3:+9838636 | Msa0938120:CDS |
| TTCAATCGAGAAACCAACCA+TGG | 0.626609 | 6_3:+9839527 | Msa0938120:CDS |
| AAGCTATAGAGGAGATACAG+AGG | 0.627859 | 6_3:+9839574 | Msa0938120:CDS |
| ACAACATTGTATAACAAGGA+TGG | 0.628564 | 6_3:+9839872 | Msa0938120:CDS |
| TATTTACTAACTTTCCCAAG+AGG | 0.628639 | 6_3:+9838884 | Msa0938120:CDS |
| TTATATGGCAAATCATTGGT+GGG | 0.628932 | 6_3:+9839748 | Msa0938120:CDS |
| GGAGACTCCACCAATTTGGT+GGG | 0.636055 | 6_3:+9839998 | Msa0938120:CDS |
| GCGGTAAAGATGGTGTTGGG+AGG | 0.636309 | 6_3:+9838548 | Msa0938120:CDS |
| CAAACTCTCCTTACTATCGA+CGG | 0.640889 | 6_3:-9838614 | None:intergenic |
| TCAATCGAGAAACCAACCAT+GGG | 0.641500 | 6_3:+9839528 | Msa0938120:CDS |
| GTCTACAACATTGTATAACA+AGG | 0.644114 | 6_3:+9839868 | Msa0938120:CDS |
| ACATGGTGTATCCGAATCCG+AGG | 0.647840 | 6_3:-9840360 | None:intergenic |
| TGCCTCATAAATGAAACCCA+TGG | 0.649986 | 6_3:-9839544 | None:intergenic |
| GATGAAAACAGAGATGACGA+TGG | 0.654534 | 6_3:+9840446 | Msa0938120:CDS |
| GCATGATGAAAATGCTAATG+GGG | 0.655477 | 6_3:+9840418 | Msa0938120:CDS |
| TCAGCTAGACACTTCAGACA+TGG | 0.667126 | 6_3:-9840377 | None:intergenic |
| CCAATGCAATGTGTTGCACA+AGG | 0.671669 | 6_3:-9839132 | None:intergenic |
| AGACGTTGAAGGTTCAGATG+TGG | 0.676100 | 6_3:+9840334 | Msa0938120:CDS |
| TGCAAATCGATAAAACCCGC+CGG | 0.677860 | 6_3:-9838386 | None:intergenic |
| TGAAGTGTCTAGCTGATGCG+GGG | 0.678573 | 6_3:+9840384 | Msa0938120:CDS |
| TTGACAGGCAGTTCTTATGG+GGG | 0.679913 | 6_3:+9840077 | Msa0938120:CDS |
| GGAATGATGCTGCAACACTG+TGG | 0.696932 | 6_3:+9839153 | Msa0938120:CDS |
| CCAATATCAAAGAAACTCGG+TGG | 0.701325 | 6_3:-9838763 | None:intergenic |
| GAAAATGTTGAAGCTTGTGA+GGG | 0.712536 | 6_3:+9838427 | Msa0938120:CDS |
| AATGATGCTGCAACACTGTG+GGG | 0.732486 | 6_3:+9839155 | Msa0938120:CDS |
| TTTCGCCATCAACATCCCAG+CGG | 0.744186 | 6_3:-9839088 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTTTTGTTGCATT+TGG | - | chr6_3:9838194-9838213 | None:intergenic | 15.0% |
| !!! | AATGTTATGATTTGTTATAA+AGG | + | chr6_3:9839468-9839487 | Msa0938120:CDS | 15.0% |
| !!! | TTTAAGACTGAAATAACTAT+AGG | - | chr6_3:9837954-9837973 | None:intergenic | 20.0% |
| !! | TTGTAGTTTAAAAAAAGTGA+AGG | - | chr6_3:9838140-9838159 | None:intergenic | 20.0% |
| !!! | TCACTTTTTTTAAACTACAA+TGG | + | chr6_3:9838140-9838159 | Msa0938120:intron | 20.0% |
| !!! | CACTTTTTTTAAACTACAAT+GGG | + | chr6_3:9838141-9838160 | Msa0938120:intron | 20.0% |
| !! | TCACAAAAGGAATATATATT+TGG | + | chr6_3:9839271-9839290 | Msa0938120:CDS | 20.0% |
| !! | TAAGCATAGAACTAAAAAAA+TGG | - | chr6_3:9839731-9839750 | None:intergenic | 20.0% |
| !!! | TTTTTAGTTCTATGCTTATA+TGG | + | chr6_3:9839733-9839752 | Msa0938120:intron | 20.0% |
| !!! | TAATAGGTATTTTACAATTC+AGG | - | chr6_3:9840154-9840173 | None:intergenic | 20.0% |
| ! | AAAGTGAAGGAAATGAAAAT+GGG | - | chr6_3:9838127-9838146 | None:intergenic | 25.0% |
| ! | AAAAGTGAAGGAAATGAAAA+TGG | - | chr6_3:9838128-9838147 | None:intergenic | 25.0% |
| !! | TATTTTGCCACTATCTTTTT+AGG | - | chr6_3:9838271-9838290 | None:intergenic | 25.0% |
| !! | TATTGTGATAATGTTGTAAC+CGG | + | chr6_3:9838367-9838386 | Msa0938120:CDS | 25.0% |
| !! | TATTGGATGGAAATATTTTC+CGG | + | chr6_3:9838780-9838799 | Msa0938120:CDS | 25.0% |
| !! | TGTATCCTTTATTTATTCAG+AGG | + | chr6_3:9839221-9839240 | Msa0938120:CDS | 25.0% |
| ! | AGAATCCTCTGAATAAATAA+AGG | - | chr6_3:9839229-9839248 | None:intergenic | 25.0% |
| ! | GGAATATATATTTGGAAAGT+TGG | + | chr6_3:9839279-9839298 | Msa0938120:CDS | 25.0% |
| ! | AAGAGAAAGGTAAATATGTT+CGG | + | chr6_3:9839620-9839639 | Msa0938120:intron | 25.0% |
| ! | TATCAAGGATAGAAAGTAAT+AGG | - | chr6_3:9840170-9840189 | None:intergenic | 25.0% |
| ! | AATCGTATTTGCATATGTTT+AGG | + | chr6_3:9840193-9840212 | Msa0938120:intron | 25.0% |
| !!! | TAATGATGTTGTTTTTGTCA+TGG | + | chr6_3:9840250-9840269 | Msa0938120:CDS | 25.0% |
| !! | AATTGATGTTCTCTTCTTTT+CGG | - | chr6_3:9840291-9840310 | None:intergenic | 25.0% |
| ! | AGATGGAGATGAAAATTAAA+TGG | + | chr6_3:9840493-9840512 | Msa0938120:exon | 25.0% |
| ! | TACAATGGGTTTGTGAAAAT+GGG | + | chr6_3:9838155-9838174 | Msa0938120:intron | 30.0% |
| AAACATGCCTAAAAAGATAG+TGG | + | chr6_3:9838261-9838280 | Msa0938120:CDS | 30.0% | |
| TCACTTGATCTTAAACTACA+TGG | + | chr6_3:9838322-9838341 | Msa0938120:CDS | 30.0% | |
| ! | GTTTAAGACTATGTGTGATT+TGG | + | chr6_3:9838714-9838733 | Msa0938120:CDS | 30.0% |
| CATCCAATATCAAAGAAACT+CGG | - | chr6_3:9838769-9838788 | None:intergenic | 30.0% | |
| TTCGTCAACTTAATATCTTC+CGG | - | chr6_3:9838802-9838821 | None:intergenic | 30.0% | |
| !! | TAAGTTGACGAATGAAGTTT+TGG | + | chr6_3:9838810-9838829 | Msa0938120:CDS | 30.0% |
| TATTTACTAACTTTCCCAAG+AGG | + | chr6_3:9838884-9838903 | Msa0938120:CDS | 30.0% | |
| AAGTTTAGTATGTTCCTCTT+GGG | - | chr6_3:9838901-9838920 | None:intergenic | 30.0% | |
| TTCAAAAAGAATGTTCCCTT+TGG | - | chr6_3:9838937-9838956 | None:intergenic | 30.0% | |
| !! | TGAGAAACTCTTTAAGATGA+TGG | + | chr6_3:9838990-9839009 | Msa0938120:CDS | 30.0% |
| AAATGTTGTCCATGTTGTAA+CGG | + | chr6_3:9839041-9839060 | Msa0938120:CDS | 30.0% | |
| GATAAGAATGTTCAAATCCA+AGG | + | chr6_3:9839365-9839384 | Msa0938120:CDS | 30.0% | |
| TTCTCTTTCTTTGTCATCTT+CGG | - | chr6_3:9839607-9839626 | None:intergenic | 30.0% | |
| AAGATGACAAAGAAAGAGAA+AGG | + | chr6_3:9839607-9839626 | Msa0938120:CDS | 30.0% | |
| ATGCTTATATGGCAAATCAT+TGG | + | chr6_3:9839744-9839763 | Msa0938120:CDS | 30.0% | |
| TTATATGGCAAATCATTGGT+GGG | + | chr6_3:9839748-9839767 | Msa0938120:CDS | 30.0% | |
| GTCTACAACATTGTATAACA+AGG | + | chr6_3:9839868-9839887 | Msa0938120:CDS | 30.0% | |
| ACAACATTGTATAACAAGGA+TGG | + | chr6_3:9839872-9839891 | Msa0938120:CDS | 30.0% | |
| ACTTGAAGATTTCGAAAAAC+AGG | + | chr6_3:9839932-9839951 | Msa0938120:CDS | 30.0% | |
| ! | GAAAAACAGGCTAATCATTT+TGG | + | chr6_3:9839945-9839964 | Msa0938120:CDS | 30.0% |
| GCAAATACGATTAAGTATCA+AGG | - | chr6_3:9840185-9840204 | None:intergenic | 30.0% | |
| TTGCATGATGAAAATGCTAA+TGG | + | chr6_3:9840416-9840435 | Msa0938120:CDS | 30.0% | |
| TGCATGATGAAAATGCTAAT+GGG | + | chr6_3:9840417-9840436 | Msa0938120:CDS | 30.0% | |
| !!! | AGAATTTGACTCCTTGTTTT+TGG | + | chr6_3:9840559-9840578 | Msa0938120:three_prime_UTR | 30.0% |
| AGATGTAAACACCAAAAACA+AGG | - | chr6_3:9840573-9840592 | None:intergenic | 30.0% | |
| ACTTCTTCTTCTTCATCAGT+TGG | + | chr6_3:9837855-9837874 | Msa0938120:CDS | 35.0% | |
| TACAACACACAACACAAACA+TGG | + | chr6_3:9837910-9837929 | Msa0938120:CDS | 35.0% | |
| ACAACACACAACACAAACAT+GGG | + | chr6_3:9837911-9837930 | Msa0938120:CDS | 35.0% | |
| ! | CTACAATGGGTTTGTGAAAA+TGG | + | chr6_3:9838154-9838173 | Msa0938120:intron | 35.0% |
| GGCAAAATATGTTGTTGAAG+TGG | + | chr6_3:9838282-9838301 | Msa0938120:CDS | 35.0% | |
| GAAAATGTTGAAGCTTGTGA+GGG | + | chr6_3:9838427-9838446 | Msa0938120:CDS | 35.0% | |
| CTCATCAATCTCTTTCAAAG+TGG | - | chr6_3:9838494-9838513 | None:intergenic | 35.0% | |
| ! | CACTTTGAAAGAGATTGATG+AGG | + | chr6_3:9838492-9838511 | Msa0938120:CDS | 35.0% |
| TTGAAAGAGATTGATGAGGA+AGG | + | chr6_3:9838496-9838515 | Msa0938120:CDS | 35.0% | |
| TGAAAGAGATTGATGAGGAA+GGG | + | chr6_3:9838497-9838516 | Msa0938120:CDS | 35.0% | |
| GGAGTAGGTGAAAAAAGAAA+AGG | + | chr6_3:9838526-9838545 | Msa0938120:CDS | 35.0% | |
| GTAGGTGAAAAAAGAAAAGG+CGG | + | chr6_3:9838529-9838548 | Msa0938120:CDS | 35.0% | |
| AAAAGAAAAGGCGGTAAAGA+TGG | + | chr6_3:9838538-9838557 | Msa0938120:CDS | 35.0% | |
| GATAGTTTCAAGAGAAAGAG+AGG | + | chr6_3:9838577-9838596 | Msa0938120:CDS | 35.0% | |
| CAATGCTATACCAGTTGAAA+TGG | + | chr6_3:9838678-9838697 | Msa0938120:CDS | 35.0% | |
| TCACTTTCTACCATTTCAAC+TGG | - | chr6_3:9838691-9838710 | None:intergenic | 35.0% | |
| !! | TGTGATTTGGTTTCAAGACA+TGG | + | chr6_3:9838727-9838746 | Msa0938120:CDS | 35.0% |
| CGAGTTTCTTTGATATTGGA+TGG | + | chr6_3:9838767-9838786 | Msa0938120:CDS | 35.0% | |
| CAAGTTTAGTATGTTCCTCT+TGG | - | chr6_3:9838902-9838921 | None:intergenic | 35.0% | |
| TTGTTAGTGAACAGTCCAAA+GGG | + | chr6_3:9838919-9838938 | Msa0938120:CDS | 35.0% | |
| TATTGATGCGTCTGATATGT+TGG | + | chr6_3:9838960-9838979 | Msa0938120:CDS | 35.0% | |
| GTGTATATTCCGTTACAACA+TGG | - | chr6_3:9839053-9839072 | None:intergenic | 35.0% | |
| !! | ATAAGTGTCGCTTTGTGAAT+AGG | - | chr6_3:9839186-9839205 | None:intergenic | 35.0% |
| TATTCACAAAGCGACACTTA+TGG | + | chr6_3:9839185-9839204 | Msa0938120:CDS | 35.0% | |
| TTTATTCAGAGGATTCTCTC+AGG | + | chr6_3:9839232-9839251 | Msa0938120:CDS | 35.0% | |
| CTATTGCTACTCTTCACAAA+AGG | + | chr6_3:9839258-9839277 | Msa0938120:CDS | 35.0% | |
| TGTTGTCTTCATGAGAACAA+AGG | + | chr6_3:9839336-9839355 | Msa0938120:CDS | 35.0% | |
| GATGAATGGGAAATACATTG+AGG | + | chr6_3:9839416-9839435 | Msa0938120:CDS | 35.0% | |
| ! | AAACGAAGCACTTCAAGTAT+AGG | - | chr6_3:9839501-9839520 | None:intergenic | 35.0% |
| ! | TATACTTGAAGTGCTTCGTT+TGG | + | chr6_3:9839500-9839519 | Msa0938120:CDS | 35.0% |
| TCATAAATGAAACCCATGGT+TGG | - | chr6_3:9839543-9839562 | None:intergenic | 35.0% | |
| AACCATGGGTTTCATTTATG+AGG | + | chr6_3:9839542-9839561 | Msa0938120:CDS | 35.0% | |
| !!! | GAACATTTGTTTTGCAGTCT+TGG | + | chr6_3:9839675-9839694 | Msa0938120:intron | 35.0% |
| CTTATATGGCAAATCATTGG+TGG | + | chr6_3:9839747-9839766 | Msa0938120:CDS | 35.0% | |
| CAGGACTATAGTGAAATTGA+GGG | - | chr6_3:9839818-9839837 | None:intergenic | 35.0% | |
| CTAATGTCATCTCTAAATCC+AGG | - | chr6_3:9839837-9839856 | None:intergenic | 35.0% | |
| TCAATCCTAGATCTTTCTTC+AGG | - | chr6_3:9839906-9839925 | None:intergenic | 35.0% | |
| TTATCATCTTACCATCTCGA+AGG | - | chr6_3:9840120-9840139 | None:intergenic | 35.0% | |
| GCATGATGAAAATGCTAATG+GGG | + | chr6_3:9840418-9840437 | Msa0938120:CDS | 35.0% | |
| TCTTCATCAGTTGGCATTGT+CGG | + | chr6_3:9837864-9837883 | Msa0938120:CDS | 40.0% | |
| TGTATGAACAGTGCTTGGTT+CGG | - | chr6_3:9837894-9837913 | None:intergenic | 40.0% | |
| TGTGTTGTATGAACAGTGCT+TGG | - | chr6_3:9837899-9837918 | None:intergenic | 40.0% | |
| ! | TGTGATAATGTTGTAACCGG+CGG | + | chr6_3:9838370-9838389 | Msa0938120:CDS | 40.0% |
| ! | CGATTTGCATGTCACTTAAC+TGG | + | chr6_3:9838400-9838419 | Msa0938120:CDS | 40.0% |
| ! | TGCATGTCACTTAACTGGAA+AGG | + | chr6_3:9838405-9838424 | Msa0938120:CDS | 40.0% |
| GGAAAATGTTGAAGCTTGTG+AGG | + | chr6_3:9838426-9838445 | Msa0938120:CDS | 40.0% | |
| TGAGGTGAAGAAGGAAATGT+TGG | + | chr6_3:9838459-9838478 | Msa0938120:CDS | 40.0% | |
| ! | ATTGATGAGGAAGGGTATGT+TGG | + | chr6_3:9838505-9838524 | Msa0938120:CDS | 40.0% |
| CAAACTCTCCTTACTATCGA+CGG | - | chr6_3:9838617-9838636 | None:intergenic | 40.0% | |
| TAGTAAGGAGAGTTTGAGTG+AGG | + | chr6_3:9838621-9838640 | Msa0938120:CDS | 40.0% | |
| CCAATATCAAAGAAACTCGG+TGG | - | chr6_3:9838766-9838785 | None:intergenic | 40.0% | |
| CCACCGAGTTTCTTTGATAT+TGG | + | chr6_3:9838763-9838782 | Msa0938120:CDS | 40.0% | |
| TGGAAGAACATAGAGCTATG+TGG | + | chr6_3:9838830-9838849 | Msa0938120:CDS | 40.0% | |
| CTTGTTAGTGAACAGTCCAA+AGG | + | chr6_3:9838918-9838937 | Msa0938120:CDS | 40.0% | |
| ATGACGTTGTTGAAGAGGTT+GGG | + | chr6_3:9839013-9839032 | Msa0938120:CDS | 40.0% | |
| GAATGTTCAAATCCAAGGAG+TGG | + | chr6_3:9839370-9839389 | Msa0938120:CDS | 40.0% | |
| AGTTCGCAAAGACGATGAAT+GGG | + | chr6_3:9839403-9839422 | Msa0938120:CDS | 40.0% | |
| TGGGAAATACATTGAGGATG+CGG | + | chr6_3:9839422-9839441 | Msa0938120:CDS | 40.0% | |
| ! | CGGTTTTGCACAAAAGGTTT+TGG | + | chr6_3:9839442-9839461 | Msa0938120:CDS | 40.0% |
| TTCAATCGAGAAACCAACCA+TGG | + | chr6_3:9839527-9839546 | Msa0938120:CDS | 40.0% | |
| TCAATCGAGAAACCAACCAT+GGG | + | chr6_3:9839528-9839547 | Msa0938120:CDS | 40.0% | |
| TGCCTCATAAATGAAACCCA+TGG | - | chr6_3:9839547-9839566 | None:intergenic | 40.0% | |
| GGGTTTCATTTATGAGGCAA+TGG | + | chr6_3:9839548-9839567 | Msa0938120:CDS | 40.0% | |
| AAGCTATAGAGGAGATACAG+AGG | + | chr6_3:9839574-9839593 | Msa0938120:CDS | 40.0% | |
| GAAAGGTAAATATGTTCGGC+AGG | + | chr6_3:9839624-9839643 | Msa0938120:intron | 40.0% | |
| AATATCCTGCAGCATGCAAA+GGG | - | chr6_3:9839788-9839807 | None:intergenic | 40.0% | |
| AAATATCCTGCAGCATGCAA+AGG | - | chr6_3:9839789-9839808 | None:intergenic | 40.0% | |
| CCAGGACTATAGTGAAATTG+AGG | - | chr6_3:9839819-9839838 | None:intergenic | 40.0% | |
| CCTCAATTTCACTATAGTCC+TGG | + | chr6_3:9839816-9839835 | Msa0938120:CDS | 40.0% | |
| CCTAGATCTTTCTTCAGGAT+TGG | - | chr6_3:9839901-9839920 | None:intergenic | 40.0% | |
| CCAATCCTGAAGAAAGATCT+AGG | + | chr6_3:9839898-9839917 | Msa0938120:CDS | 40.0% | |
| AGACACGAATTGCGAAATTC+TGG | - | chr6_3:9840052-9840071 | None:intergenic | 40.0% | |
| ATTCGTGTCTTATGCTTGAC+AGG | + | chr6_3:9840062-9840081 | Msa0938120:CDS | 40.0% | |
| GGTACACGCTATGAATTTGA+AGG | + | chr6_3:9840214-9840233 | Msa0938120:intron | 40.0% | |
| GAGCTAAATCTTGATGCCAA+TGG | + | chr6_3:9840311-9840330 | Msa0938120:CDS | 40.0% | |
| GATGAAAACAGAGATGACGA+TGG | + | chr6_3:9840446-9840465 | Msa0938120:CDS | 40.0% | |
| GATGGATATGAAGACGAAGA+TGG | + | chr6_3:9840476-9840495 | Msa0938120:CDS | 40.0% | |
| GCAAACACTACACTGAACTT+AGG | - | chr6_3:9840667-9840686 | None:intergenic | 40.0% | |
| ! | GTGATAATGTTGTAACCGGC+GGG | + | chr6_3:9838371-9838390 | Msa0938120:CDS | 45.0% |
| TGCAAATCGATAAAACCCGC+CGG | - | chr6_3:9838389-9838408 | None:intergenic | 45.0% | |
| !! | TGTTGGTGATGAGGTGAAGA+AGG | + | chr6_3:9838450-9838469 | Msa0938120:CDS | 45.0% |
| AAAGGCGGTAAAGATGGTGT+TGG | + | chr6_3:9838544-9838563 | Msa0938120:CDS | 45.0% | |
| AAGGCGGTAAAGATGGTGTT+GGG | + | chr6_3:9838545-9838564 | Msa0938120:CDS | 45.0% | |
| ! | AAGATGGTGTTGGGAGGAAT+AGG | + | chr6_3:9838554-9838573 | Msa0938120:CDS | 45.0% |
| ! | AGATGGTGTTGGGAGGAATA+GGG | + | chr6_3:9838555-9838574 | Msa0938120:CDS | 45.0% |
| ACAAGACTCCGTCGATAGTA+AGG | + | chr6_3:9838606-9838625 | Msa0938120:CDS | 45.0% | |
| TAAGGAGAGTTTGAGTGAGG+AGG | + | chr6_3:9838624-9838643 | Msa0938120:CDS | 45.0% | |
| TTGGTTTCAAGACATGGCGT+AGG | + | chr6_3:9838733-9838752 | Msa0938120:CDS | 45.0% | |
| AGAGCTATGTGGAAGATCAC+TGG | + | chr6_3:9838841-9838860 | Msa0938120:CDS | 45.0% | |
| ! | GATCACTGGTTGCAGCATAA+TGG | + | chr6_3:9838855-9838874 | Msa0938120:CDS | 45.0% |
| GATGGATGACGTTGTTGAAG+AGG | + | chr6_3:9839008-9839027 | Msa0938120:CDS | 45.0% | |
| GATGACGTTGTTGAAGAGGT+TGG | + | chr6_3:9839012-9839031 | Msa0938120:CDS | 45.0% | |
| TGACGTTGTTGAAGAGGTTG+GGG | + | chr6_3:9839014-9839033 | Msa0938120:CDS | 45.0% | |
| !! | TGTTGATGGCGAAAAGGACT+AGG | + | chr6_3:9839097-9839116 | Msa0938120:CDS | 45.0% |
| CGAAAAGGACTAGGCTGTAT+TGG | + | chr6_3:9839106-9839125 | Msa0938120:CDS | 45.0% | |
| CCAATGCAATGTGTTGCACA+AGG | - | chr6_3:9839135-9839154 | None:intergenic | 45.0% | |
| CCTTGTGCAACACATTGCAT+TGG | + | chr6_3:9839132-9839151 | Msa0938120:CDS | 45.0% | |
| GAATGATGCTGCAACACTGT+GGG | + | chr6_3:9839154-9839173 | Msa0938120:CDS | 45.0% | |
| AATGATGCTGCAACACTGTG+GGG | + | chr6_3:9839155-9839174 | Msa0938120:CDS | 45.0% | |
| GAGTTCGCAAAGACGATGAA+TGG | + | chr6_3:9839402-9839421 | Msa0938120:CDS | 45.0% | |
| ! | AGGATGCGGTTTTGCACAAA+AGG | + | chr6_3:9839436-9839455 | Msa0938120:CDS | 45.0% |
| GGCAATGGTGAAAGCTATAG+AGG | + | chr6_3:9839563-9839582 | Msa0938120:CDS | 45.0% | |
| CCAGCAGTAATTACGGCTAT+TGG | - | chr6_3:9839975-9839994 | None:intergenic | 45.0% | |
| CCAATAGCCGTAATTACTGC+TGG | + | chr6_3:9839972-9839991 | Msa0938120:CDS | 45.0% | |
| CTCCTCACCAGCAGTAATTA+CGG | - | chr6_3:9839982-9840001 | None:intergenic | 45.0% | |
| AAAGATGCCCACCAAATTGG+TGG | - | chr6_3:9840008-9840027 | None:intergenic | 45.0% | |
| TGCTTGACAGGCAGTTCTTA+TGG | + | chr6_3:9840074-9840093 | Msa0938120:CDS | 45.0% | |
| GCTTGACAGGCAGTTCTTAT+GGG | + | chr6_3:9840075-9840094 | Msa0938120:CDS | 45.0% | |
| CTTGACAGGCAGTTCTTATG+GGG | + | chr6_3:9840076-9840095 | Msa0938120:CDS | 45.0% | |
| TTGACAGGCAGTTCTTATGG+GGG | + | chr6_3:9840077-9840096 | Msa0938120:CDS | 45.0% | |
| CTTATGGGGGTGAACGTAAT+CGG | + | chr6_3:9840090-9840109 | Msa0938120:CDS | 45.0% | |
| TGAACCTTCAACGTCTCCAT+TGG | - | chr6_3:9840330-9840349 | None:intergenic | 45.0% | |
| AGACGTTGAAGGTTCAGATG+TGG | + | chr6_3:9840334-9840353 | Msa0938120:CDS | 45.0% | |
| TCAGCTAGACACTTCAGACA+TGG | - | chr6_3:9840380-9840399 | None:intergenic | 45.0% | |
| ! | TCTGAAGTGTCTAGCTGATG+CGG | + | chr6_3:9840382-9840401 | Msa0938120:CDS | 45.0% |
| GATGACGATGGAGATGAAGA+TGG | + | chr6_3:9840458-9840477 | Msa0938120:CDS | 45.0% | |
| ! | GTTGAAGCTTGTGAGGGTGT+TGG | + | chr6_3:9838433-9838452 | Msa0938120:CDS | 50.0% |
| !! | TTGTGAGGGTGTTGGTGATG+AGG | + | chr6_3:9838441-9838460 | Msa0938120:CDS | 50.0% |
| ! | GAGGAAGGGTATGTTGGAGT+AGG | + | chr6_3:9838511-9838530 | Msa0938120:CDS | 50.0% |
| CATACTATGTAGCTGCCGCT+GGG | + | chr6_3:9839073-9839092 | Msa0938120:CDS | 50.0% | |
| TTTCGCCATCAACATCCCAG+CGG | - | chr6_3:9839091-9839110 | None:intergenic | 50.0% | |
| !! | CTGGGATGTTGATGGCGAAA+AGG | + | chr6_3:9839091-9839110 | Msa0938120:CDS | 50.0% |
| GGAATGATGCTGCAACACTG+TGG | + | chr6_3:9839153-9839172 | Msa0938120:CDS | 50.0% | |
| GGCAAATCATTGGTGGGACA+TGG | + | chr6_3:9839754-9839773 | Msa0938120:CDS | 50.0% | |
| AGCCGTAATTACTGCTGGTG+AGG | + | chr6_3:9839977-9839996 | Msa0938120:CDS | 50.0% | |
| GTGAGGAGACTCCACCAATT+TGG | + | chr6_3:9839994-9840013 | Msa0938120:CDS | 50.0% | |
| AGGAGACTCCACCAATTTGG+TGG | + | chr6_3:9839997-9840016 | Msa0938120:CDS | 50.0% | |
| GGAGACTCCACCAATTTGGT+GGG | + | chr6_3:9839998-9840017 | Msa0938120:CDS | 50.0% | |
| GCGAAAGATGCCCACCAAAT+TGG | - | chr6_3:9840011-9840030 | None:intergenic | 50.0% | |
| TAATCGGAAGGCCTTCGAGA+TGG | + | chr6_3:9840106-9840125 | Msa0938120:CDS | 50.0% | |
| GATGCCAATGGAGACGTTGA+AGG | + | chr6_3:9840323-9840342 | Msa0938120:CDS | 50.0% | |
| AGGTTCAGATGTGGATGCCT+CGG | + | chr6_3:9840343-9840362 | Msa0938120:CDS | 50.0% | |
| AGATGTGGATGCCTCGGATT+CGG | + | chr6_3:9840349-9840368 | Msa0938120:CDS | 50.0% | |
| ACATGGTGTATCCGAATCCG+AGG | - | chr6_3:9840363-9840382 | None:intergenic | 50.0% | |
| ! | CTGAAGTGTCTAGCTGATGC+GGG | + | chr6_3:9840383-9840402 | Msa0938120:CDS | 50.0% |
| ! | TGAAGTGTCTAGCTGATGCG+GGG | + | chr6_3:9840384-9840403 | Msa0938120:CDS | 50.0% |
| GAGCTGCTGCTCCAATGTGT+TGG | - | chr6_3:9837808-9837827 | None:intergenic | 55.0% | |
| ! | GCGGTAAAGATGGTGTTGGG+AGG | + | chr6_3:9838548-9838567 | Msa0938120:CDS | 55.0% |
| CCAGCGGCAGCTACATAGTA+TGG | - | chr6_3:9839075-9839094 | None:intergenic | 55.0% | |
| CCATACTATGTAGCTGCCGC+TGG | + | chr6_3:9839072-9839091 | Msa0938120:CDS | 55.0% | |
| CATCGTCTTTGCGAACTCGC+TGG | - | chr6_3:9839400-9839419 | None:intergenic | 55.0% | |
| CTGCAGCATGCAAAGGGCAA+TGG | - | chr6_3:9839782-9839801 | None:intergenic | 55.0% | |
| CATTGCCCTTTGCATGCTGC+AGG | + | chr6_3:9839780-9839799 | Msa0938120:CDS | 55.0% | |
| TGGGGGTGAACGTAATCGGA+AGG | + | chr6_3:9840094-9840113 | Msa0938120:CDS | 55.0% | |
| ! | GAGTGAGGAGGCATGTCGAG+CGG | + | chr6_3:9838636-9838655 | Msa0938120:CDS | 60.0% |
| AGGCATGTCGAGCGGTTGCA+AGG | + | chr6_3:9838644-9838663 | Msa0938120:CDS | 60.0% | |
| AGCTGCCGCTGGGATGTTGA+TGG | + | chr6_3:9839083-9839102 | Msa0938120:CDS | 60.0% | |
| CTCGCTGGACTTCCACTCCT+TGG | - | chr6_3:9839385-9839404 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 9837800 | 9840686 | 9837800 | ID=Msa0938120;Name=Msa0938120 |
| chr6_3 | mRNA | 9837800 | 9840686 | 9837800 | ID=Msa0938120-mRNA-1;Parent=Msa0938120;Name=Msa0938120-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0.33|0.25|0.5|1|1|4|175|733 |
| chr6_3 | exon | 9837800 | 9837932 | 9837800 | ID=Msa0938120-mRNA-1:exon:3105;Parent=Msa0938120-mRNA-1 |
| chr6_3 | exon | 9838245 | 9839628 | 9838245 | ID=Msa0938120-mRNA-1:exon:3106;Parent=Msa0938120-mRNA-1 |
| chr6_3 | exon | 9839740 | 9840127 | 9839740 | ID=Msa0938120-mRNA-1:exon:3107;Parent=Msa0938120-mRNA-1 |
| chr6_3 | exon | 9840215 | 9840686 | 9840215 | ID=Msa0938120-mRNA-1:exon:3108;Parent=Msa0938120-mRNA-1 |
| chr6_3 | CDS | 9837800 | 9837932 | 9837800 | ID=Msa0938120-mRNA-1:cds;Parent=Msa0938120-mRNA-1 |
| chr6_3 | CDS | 9838245 | 9839628 | 9838245 | ID=Msa0938120-mRNA-1:cds;Parent=Msa0938120-mRNA-1 |
| chr6_3 | CDS | 9839740 | 9840127 | 9839740 | ID=Msa0938120-mRNA-1:cds;Parent=Msa0938120-mRNA-1 |
| chr6_3 | CDS | 9840215 | 9840511 | 9840215 | ID=Msa0938120-mRNA-1:cds;Parent=Msa0938120-mRNA-1 |
| chr6_3 | three_prime_UTR | 9840512 | 9840686 | 9840512 | ID=Msa0938120-mRNA-1:three_prime_utr;Parent=Msa0938120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
