Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0978900 | XP_004516664.1 | 76.567 | 670 | 86 | 11 | 52 | 653 | 1 | 667 | 0.0 | 988 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0978900 | sp|B8E2D3|PGK_DICTD | 27.000 | 400 | 234 | 10 | 115 | 466 | 4 | 393 | 3.72e-31 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0978900 | A0A396HHU0 | 82.958 | 710 | 55 | 9 | 19 | 665 | 31 | 737 | 0.0 | 1148 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038350 | Msa0978900 | -0.814777 | 1.296242e-51 | -8.615850e-47 |
| Msa0063580 | Msa0978900 | 0.828612 | 8.159131e-55 | -8.615850e-47 |
| Msa0073820 | Msa0978900 | 0.800101 | 1.687456e-48 | -8.615850e-47 |
| Msa0120330 | Msa0978900 | 0.804534 | 2.063062e-49 | -8.615850e-47 |
| Msa0621890 | Msa0978900 | 0.822318 | 2.526143e-53 | -8.615850e-47 |
| Msa0657670 | Msa0978900 | 0.800847 | 1.189414e-48 | -8.615850e-47 |
| Msa0674220 | Msa0978900 | 0.801707 | 7.929406e-49 | -8.615850e-47 |
| Msa0697540 | Msa0978900 | 0.805025 | 1.629213e-49 | -8.615850e-47 |
| Msa0792510 | Msa0978900 | 0.821046 | 4.971104e-53 | -8.615850e-47 |
| Msa0158020 | Msa0978900 | 0.800803 | 1.214358e-48 | -8.615850e-47 |
| Msa0171780 | Msa0978900 | 0.802044 | 6.761845e-49 | -8.615850e-47 |
| Msa0208390 | Msa0978900 | 0.831413 | 1.693363e-55 | -8.615850e-47 |
| Msa0450050 | Msa0978900 | 0.804597 | 2.001382e-49 | -8.615850e-47 |
| Msa0275670 | Msa0978900 | 0.800693 | 1.278622e-48 | -8.615850e-47 |
| Msa0298940 | Msa0978900 | 0.828773 | 7.462713e-55 | -8.615850e-47 |
| Msa0298970 | Msa0978900 | 0.814880 | 1.229584e-51 | -8.615850e-47 |
| Msa0342200 | Msa0978900 | 0.803106 | 4.083569e-49 | -8.615850e-47 |
| Msa0350020 | Msa0978900 | 0.801894 | 7.258271e-49 | -8.615850e-47 |
| Msa0538700 | Msa0978900 | 0.801035 | 1.088767e-48 | -8.615850e-47 |
| Msa0574170 | Msa0978900 | 0.816975 | 4.192032e-52 | -8.615850e-47 |
| Msa0909710 | Msa0978900 | 0.815318 | 9.832854e-52 | -8.615850e-47 |
| Msa0977320 | Msa0978900 | 0.800042 | 1.735105e-48 | -8.615850e-47 |
| Msa0978900 | Msa0980440 | 0.813219 | 2.858745e-51 | -8.615850e-47 |
| Msa0978900 | Msa1008490 | 0.804187 | 2.436320e-49 | -8.615850e-47 |
| Msa0978900 | Msa1036390 | 0.828421 | 9.074048e-55 | -8.615850e-47 |
| Msa0978900 | Msa1038050 | 0.839941 | 1.172584e-57 | -8.615850e-47 |
| Msa0978900 | Msa1055280 | 0.803933 | 2.752193e-49 | -8.615850e-47 |
| Msa0978900 | Msa1076680 | 0.826005 | 3.438445e-54 | -8.615850e-47 |
| Msa0978900 | Msa1220230 | 0.827991 | 1.151980e-54 | -8.615850e-47 |
| Msa0978900 | Msa1254770 | 0.806486 | 8.037000e-50 | -8.615850e-47 |
| Msa0978900 | Msa1254800 | 0.803264 | 3.787133e-49 | -8.615850e-47 |
| Msa0978900 | Msa1254950 | 0.802584 | 5.235189e-49 | -8.615850e-47 |
| Msa0978900 | Msa1265960 | 0.804062 | 2.586838e-49 | -8.615850e-47 |
| Msa0978900 | Msa1295690 | 0.803138 | 4.022829e-49 | -8.615850e-47 |
| Msa0978900 | Msa1326000 | 0.808376 | 3.193477e-50 | -8.615850e-47 |
| Msa0978900 | Msa1329990 | 0.809209 | 2.118766e-50 | -8.615850e-47 |
| Msa0978900 | Msa1373950 | 0.819779 | 9.709448e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0978900 | MtrunA17_Chr6g0457691 | 82.958 | 710 | 55 | 9 | 19 | 665 | 31 | 737 | 0.0 | 1148 |
| Msa0978900 | MtrunA17_Chr8g0337231 | 39.303 | 201 | 103 | 5 | 471 | 653 | 115 | 314 | 3.74e-35 | 135 |
| Msa0978900 | MtrunA17_Chr8g0337241 | 37.811 | 201 | 106 | 5 | 471 | 653 | 78 | 277 | 2.57e-32 | 126 |
| Msa0978900 | MtrunA17_Chr2g0310601 | 27.723 | 404 | 246 | 11 | 115 | 474 | 78 | 479 | 3.23e-32 | 130 |
| Msa0978900 | MtrunA17_Chr2g0310611 | 28.010 | 407 | 230 | 12 | 114 | 469 | 97 | 491 | 2.61e-27 | 116 |
| Msa0978900 | MtrunA17_Chr2g0310621 | 27.518 | 407 | 232 | 12 | 114 | 469 | 7 | 401 | 1.18e-26 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0978900 | AT5G17660.1 | 38.071 | 197 | 110 | 3 | 476 | 660 | 116 | 312 | 1.66e-34 | 134 |
| Msa0978900 | AT3G12780.1 | 28.571 | 406 | 240 | 12 | 115 | 474 | 80 | 481 | 3.97e-32 | 130 |
| Msa0978900 | AT1G56190.2 | 28.788 | 396 | 234 | 12 | 124 | 474 | 13 | 405 | 1.63e-31 | 127 |
| Msa0978900 | AT1G56190.1 | 28.788 | 396 | 234 | 12 | 124 | 474 | 86 | 478 | 5.14e-31 | 127 |
| Msa0978900 | AT1G79550.1 | 27.000 | 400 | 243 | 11 | 114 | 469 | 7 | 401 | 1.97e-29 | 121 |
| Msa0978900 | AT1G79550.2 | 27.000 | 400 | 243 | 11 | 114 | 469 | 7 | 401 | 1.97e-29 | 121 |
Find 98 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGAAATTTGACAACTTT+TGG | 0.162141 | 6_4:+15063447 | None:intergenic |
| AAGAGATGTACCTTAAAATT+TGG | 0.193455 | 6_4:+15063779 | None:intergenic |
| TTCATTGTCTTCTATAAATA+TGG | 0.202946 | 6_4:-15060224 | Msa0978900:CDS |
| TGCTACATATGGTTTCTTAT+TGG | 0.205027 | 6_4:+15061459 | None:intergenic |
| AGGAAAGATTTGAACTTTCT+TGG | 0.253177 | 6_4:-15059439 | Msa0978900:CDS |
| TTTCCTAGGGAGGAGCTATT+TGG | 0.263940 | 6_4:-15062065 | Msa0978900:CDS |
| TTGCAAATGTAAGCTTGTTT+TGG | 0.274490 | 6_4:-15058261 | Msa0978900:CDS |
| AAACGTTATTCCAGTTGATT+TGG | 0.277453 | 6_4:+15059676 | None:intergenic |
| AAGAAAGCTCCCTGGTGTTT+TGG | 0.283155 | 6_4:-15060164 | Msa0978900:CDS |
| ATGAAAACCCATTTGGAGTT+AGG | 0.283264 | 6_4:-15058214 | Msa0978900:CDS |
| TTGAGAATGCTTCAGTAGTA+TGG | 0.302070 | 6_4:-15060201 | Msa0978900:CDS |
| GTCAAATTTCAGAAATATAA+TGG | 0.303499 | 6_4:-15063438 | Msa0978900:intron |
| ATCCACCACTGCTTCAATTA+AGG | 0.305750 | 6_4:+15058746 | None:intergenic |
| TGTTCAGGTTTATTGAAATC+AGG | 0.309787 | 6_4:+15058792 | None:intergenic |
| GACGAATGGAGCATCTAAAT+TGG | 0.320509 | 6_4:-15060335 | Msa0978900:CDS |
| TTCTTCTCGAAATGGCAAAA+AGG | 0.321279 | 6_4:-15059462 | Msa0978900:CDS |
| TGAAATCTGATTGATTCTTC+TGG | 0.327378 | 6_4:+15061988 | None:intergenic |
| GCAGTTTCAATCTAGTGAAT+TGG | 0.334346 | 6_4:-15063572 | Msa0978900:intron |
| AGTACAAGTTCCTATTGATT+TGG | 0.339322 | 6_4:-15061203 | Msa0978900:CDS |
| AGATTTGAACTTTCTTGGTT+TGG | 0.339411 | 6_4:-15059434 | Msa0978900:CDS |
| GACAAGCTATCAGAGATTAA+AGG | 0.350979 | 6_4:-15061721 | Msa0978900:CDS |
| TTCTGCTATGCTTGTCTAGC+TGG | 0.352678 | 6_4:-15061529 | Msa0978900:CDS |
| ACAAAATCGGTTGCAGTTGC+AGG | 0.358296 | 6_4:-15061879 | Msa0978900:intron |
| ATCGGAGATAACTGAAGTTT+CGG | 0.358520 | 6_4:-15058126 | Msa0978900:CDS |
| ATACAAGTTATTCCACTTCA+AGG | 0.362776 | 6_4:-15061754 | Msa0978900:CDS |
| TTCAGAACTTTGCACAAAAT+CGG | 0.372685 | 6_4:-15061892 | Msa0978900:CDS |
| TTTCAAATAATGCACGCATT+AGG | 0.373182 | 6_4:-15061226 | Msa0978900:CDS |
| TCTCTAAGAGTTTGTATATG+AGG | 0.387618 | 6_4:+15062089 | None:intergenic |
| ATTAGTTCTTGTATCAATAC+AGG | 0.389562 | 6_4:-15059096 | Msa0978900:intron |
| TGTTTAAGAAGACTTGTTCA+TGG | 0.389874 | 6_4:+15063526 | None:intergenic |
| CAGAGAAAGCAGCTTCCTTT+CGG | 0.391800 | 6_4:-15061297 | Msa0978900:intron |
| CAATCTGACCTAACTCCAAA+TGG | 0.392554 | 6_4:+15058206 | None:intergenic |
| TGGAGAATGGCCAAAGTGAT+TGG | 0.399494 | 6_4:-15058241 | Msa0978900:CDS |
| GTGGAATAACTTGTATTTGA+AGG | 0.405723 | 6_4:+15061761 | None:intergenic |
| TCAATAAACCTGAACATAGA+TGG | 0.407609 | 6_4:-15058785 | Msa0978900:CDS |
| TGGCTTGATGAAAACCCATT+TGG | 0.414975 | 6_4:-15058221 | Msa0978900:CDS |
| AAACTCTTAGAGAATTTCCT+AGG | 0.415158 | 6_4:-15062079 | Msa0978900:CDS |
| AGGCATACAATTGCTACATA+TGG | 0.421000 | 6_4:+15061448 | None:intergenic |
| GGTTTATTGAAATCAGGGTT+TGG | 0.423467 | 6_4:+15058798 | None:intergenic |
| CATTTGGAGTTAGGTCAGAT+TGG | 0.439570 | 6_4:-15058205 | Msa0978900:CDS |
| ATTTGGAGTTAGGTCAGATT+GGG | 0.448877 | 6_4:-15058204 | Msa0978900:CDS |
| CAACGGTTTGGCATAAAGAA+TGG | 0.448972 | 6_4:-15059273 | Msa0978900:CDS |
| CTGGATTCGACTCAACGGTT+TGG | 0.452981 | 6_4:-15059285 | Msa0978900:CDS |
| TTACGGTCCACCAAATCAAT+AGG | 0.453766 | 6_4:+15061193 | None:intergenic |
| GAAAACATCATTCGGTACAT+AGG | 0.457434 | 6_4:+15058155 | None:intergenic |
| GTTCATGGAGAATCTTCATA+AGG | 0.460401 | 6_4:+15063541 | None:intergenic |
| CAGTTATTTCACAGTTTCCT+TGG | 0.461709 | 6_4:+15060290 | None:intergenic |
| CATACCCTTTCCAAATCAAC+TGG | 0.462270 | 6_4:-15059686 | Msa0978900:CDS |
| CAATCTCTTGTCGTTGACAT+TGG | 0.465100 | 6_4:-15059639 | Msa0978900:CDS |
| ATTAAATATTTACATGAAGC+CGG | 0.468498 | 6_4:-15061951 | Msa0978900:CDS |
| AGGTCATCCTGGTCAGTGAT+TGG | 0.478276 | 6_4:-15061923 | Msa0978900:CDS |
| AGCGTTCTCCATCTATGTTC+AGG | 0.480222 | 6_4:+15058777 | None:intergenic |
| GTTCAGGTTTATTGAAATCA+GGG | 0.480490 | 6_4:+15058793 | None:intergenic |
| ACAGGAAATGGAGAGTTAGC+AGG | 0.481065 | 6_4:-15063181 | Msa0978900:intron |
| ATGATTTAGAAAACATCATT+CGG | 0.483245 | 6_4:+15058147 | None:intergenic |
| ACAAGTTCCTATTGATTTGG+TGG | 0.489903 | 6_4:-15061200 | Msa0978900:CDS |
| GATACAAGAACTAATTCTCC+AGG | 0.492567 | 6_4:+15059104 | None:intergenic |
| CGAAGTGAACACACGACGAA+TGG | 0.493694 | 6_4:-15060349 | Msa0978900:CDS |
| TCTCATACAATTCAGATTGG+AGG | 0.499200 | 6_4:-15061331 | Msa0978900:intron |
| AACGGTTTGGCATAAAGAAT+GGG | 0.506777 | 6_4:-15059272 | Msa0978900:intron |
| GATAATGGAGGAAAGTTGAA+TGG | 0.508396 | 6_4:-15062116 | Msa0978900:intron |
| TATTCCAGTTGATTTGGAAA+GGG | 0.509461 | 6_4:+15059682 | None:intergenic |
| TTTCATCAAGCCAATCACTT+TGG | 0.511245 | 6_4:+15058231 | None:intergenic |
| GAGCTTCACTAAATGCCTTA+CGG | 0.512317 | 6_4:+15061176 | None:intergenic |
| TATTGATTTGGTGGACCGTA+AGG | 0.513262 | 6_4:-15061191 | Msa0978900:CDS |
| TGGTTTGGAGATGAATGAAA+AGG | 0.513271 | 6_4:-15059419 | Msa0978900:intron |
| TGTCAACTCATTCAACCATA+AGG | 0.520513 | 6_4:-15063152 | Msa0978900:intron |
| AACTGTGAAATAACTGTTGT+TGG | 0.523014 | 6_4:-15060283 | Msa0978900:CDS |
| TTATTCCAGTTGATTTGGAA+AGG | 0.523293 | 6_4:+15059681 | None:intergenic |
| TTTCCAAATAGCTCCTCCCT+AGG | 0.531477 | 6_4:+15062062 | None:intergenic |
| TTTGCAATCTGATGTGGAAG+AGG | 0.535100 | 6_4:-15058318 | Msa0978900:CDS |
| TGAGAATGCTTCAGTAGTAT+GGG | 0.535353 | 6_4:-15060200 | Msa0978900:CDS |
| CTTGTCGTTGACATTGGAAG+TGG | 0.535846 | 6_4:-15059633 | Msa0978900:intron |
| CTATCAAGAGCCAAAACACC+AGG | 0.549378 | 6_4:+15060154 | None:intergenic |
| GACCAGGATGACCTTTGCTC+CGG | 0.554244 | 6_4:+15061932 | None:intergenic |
| AACTTTATGAGAGTTTGAGA+AGG | 0.556596 | 6_4:+15061579 | None:intergenic |
| AACTCTTAGAGAATTTCCTA+GGG | 0.558416 | 6_4:-15062078 | Msa0978900:CDS |
| AATCTGACCTAACTCCAAAT+GGG | 0.561481 | 6_4:+15058207 | None:intergenic |
| TCAATCGTTTCTTCTTACCC+TGG | 0.565462 | 6_4:-15059122 | Msa0978900:CDS |
| CTCAAAGGAAGAAAGCTCCC+TGG | 0.567863 | 6_4:-15060172 | Msa0978900:CDS |
| AGCCGGAGCAAAGGTCATCC+TGG | 0.571711 | 6_4:-15061934 | Msa0978900:CDS |
| CATACAATTCAGATTGGAGG+CGG | 0.578134 | 6_4:-15061328 | Msa0978900:intron |
| TTTCAATCTAGTGAATTGGA+TGG | 0.594154 | 6_4:-15063568 | Msa0978900:CDS |
| TTTACATGAAGCCGGAGCAA+AGG | 0.603305 | 6_4:-15061943 | Msa0978900:CDS |
| GTAGTATGGGAATTTCTCAA+AGG | 0.603551 | 6_4:-15060187 | Msa0978900:CDS |
| GAGATCCTTAATTGAAGCAG+TGG | 0.605586 | 6_4:-15058751 | Msa0978900:intron |
| GCTGTCTGGATTCGACTCAA+CGG | 0.605612 | 6_4:-15059290 | Msa0978900:CDS |
| GGTTTGTCCAATCACTGACC+AGG | 0.610231 | 6_4:+15061916 | None:intergenic |
| GTTCACTGCAACACAGAACA+AGG | 0.610697 | 6_4:+15063818 | None:intergenic |
| TCTTAGAGAATTTCCTAGGG+AGG | 0.612761 | 6_4:-15062075 | Msa0978900:CDS |
| ATTCTTGATCAACTAAGCCA+AGG | 0.616119 | 6_4:-15060307 | Msa0978900:CDS |
| CCATCCAAAAGTCCATGAGA+AGG | 0.625113 | 6_4:+15061052 | None:intergenic |
| ATACAAGAACTAATTCTCCA+GGG | 0.651527 | 6_4:+15059105 | None:intergenic |
| AAAGTTCTAGCATCAACTGT+CGG | 0.655580 | 6_4:-15061562 | Msa0978900:CDS |
| GCTATTTGGAAAAGTCGTCA+TGG | 0.659882 | 6_4:-15062051 | Msa0978900:CDS |
| CACAACCTACACAATACACG+TGG | 0.677935 | 6_4:-15063873 | Msa0978900:CDS |
| TAAAACCACGTGTATTGTGT+AGG | 0.691492 | 6_4:+15063868 | None:intergenic |
| TATCAAGAGCCAAAACACCA+GGG | 0.722460 | 6_4:+15060155 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATTTAATTAAATTTTGAA+GGG | - | chr6_4:15058936-15058955 | Msa0978900:intron | 10.0% |
| !!! | ACAAATTTGATTATAAATTT+TGG | - | chr6_4:15060794-15060813 | Msa0978900:intron | 10.0% |
| !!! | ATATTTTCATTTTAAGATAA+TGG | - | chr6_4:15061161-15061180 | Msa0978900:CDS | 10.0% |
| !! | AAAAAATAGATAATGAAAAA+GGG | + | chr6_4:15062282-15062301 | None:intergenic | 10.0% |
| !! | ACAGATAAAGAATAAAAAAA+AGG | + | chr6_4:15058397-15058416 | None:intergenic | 15.0% |
| !!! | TAATTGATGTTATTTTTTAC+AGG | - | chr6_4:15058434-15058453 | Msa0978900:intron | 15.0% |
| !! | ATATAAACTATATTACCTTA+TGG | + | chr6_4:15058499-15058518 | None:intergenic | 15.0% |
| !!! | TTTATGATATTTTACCTTTA+AGG | - | chr6_4:15058833-15058852 | Msa0978900:intron | 15.0% |
| !!! | GAGATTTAATTAAATTTTGA+AGG | - | chr6_4:15058935-15058954 | Msa0978900:intron | 15.0% |
| !!! | AATCGATCAAATTTTATTAT+CGG | + | chr6_4:15060649-15060668 | None:intergenic | 15.0% |
| !!! | AATTTGATTATAAATTTTGG+CGG | - | chr6_4:15060797-15060816 | Msa0978900:intron | 15.0% |
| !! | ATCAAATACAGAAAATAATT+TGG | - | chr6_4:15061237-15061256 | Msa0978900:CDS | 15.0% |
| !! | GAAAAAATAGATAATGAAAA+AGG | + | chr6_4:15062283-15062302 | None:intergenic | 15.0% |
| !!! | TTTCTTCATTTATCTATTTT+AGG | - | chr6_4:15062452-15062471 | Msa0978900:intron | 15.0% |
| !! | TGTTAGTTATAGTTCAAATT+CGG | - | chr6_4:15057904-15057923 | Msa0978900:intron | 20.0% |
| !! | TATTTGTCAAATAGGTTATT+AGG | + | chr6_4:15057960-15057979 | None:intergenic | 20.0% |
| !! | GTCAAATTTCAGAAATATAA+TGG | - | chr6_4:15058195-15058214 | Msa0978900:CDS | 20.0% |
| !!! | TTTTGGTTTAATAGTCATTT+TGG | - | chr6_4:15058263-15058282 | Msa0978900:CDS | 20.0% |
| !!! | ATGTTATTTTTTACAGGAAA+TGG | - | chr6_4:15058440-15058459 | Msa0978900:intron | 20.0% |
| !! | AATATCATAACATAAGATTG+TGG | + | chr6_4:15058534-15058553 | None:intergenic | 20.0% |
| !! | ATAATAAATGCGATAATACT+TGG | - | chr6_4:15058579-15058598 | Msa0978900:intron | 20.0% |
| !! | TTTATTAGAATGAAAATGAG+AGG | - | chr6_4:15058642-15058661 | Msa0978900:intron | 20.0% |
| !! | TGAAACAATTGTATACTATA+AGG | + | chr6_4:15058754-15058773 | None:intergenic | 20.0% |
| !! | TTATAGTATACAATTGTTTC+AGG | - | chr6_4:15058753-15058772 | Msa0978900:CDS | 20.0% |
| !! | AAGGTAAAATATCATAAACA+AGG | + | chr6_4:15058831-15058850 | None:intergenic | 20.0% |
| !! | TTTAATTAAATCTCAACACA+AGG | + | chr6_4:15058929-15058948 | None:intergenic | 20.0% |
| !!! | TAATTAAATTTTGAAGGGTT+AGG | - | chr6_4:15058941-15058960 | Msa0978900:intron | 20.0% |
| !!! | AATTAAATTTTGAAGGGTTA+GGG | - | chr6_4:15058942-15058961 | Msa0978900:intron | 20.0% |
| !! | TATTATTTGAGCATCAATTT+AGG | + | chr6_4:15059341-15059360 | None:intergenic | 20.0% |
| !! | TGTTAGATTTACATTGATAA+TGG | - | chr6_4:15059502-15059521 | Msa0978900:intron | 20.0% |
| !! | ATTAAATATTTACATGAAGC+CGG | - | chr6_4:15059682-15059701 | Msa0978900:CDS | 20.0% |
| !! | AGATAATCACTTGTTTAATA+TGG | + | chr6_4:15059825-15059844 | None:intergenic | 20.0% |
| !! | TGAATTGTATGAGAAATAAA+CGG | + | chr6_4:15060296-15060315 | None:intergenic | 20.0% |
| !!! | TATTGTATCCAAAAGATTTT+TGG | - | chr6_4:15060519-15060538 | Msa0978900:intron | 20.0% |
| !! | TTCAATGCTTAAAATTTGTA+AGG | - | chr6_4:15060731-15060750 | Msa0978900:intron | 20.0% |
| !! | ATTCAAAGAATAAAGTTAGA+TGG | + | chr6_4:15061219-15061238 | None:intergenic | 20.0% |
| !! | ATACAGAAAATAATTTGGAT+TGG | - | chr6_4:15061242-15061261 | Msa0978900:CDS | 20.0% |
| !! | TTCATTGTCTTCTATAAATA+TGG | - | chr6_4:15061409-15061428 | Msa0978900:intron | 20.0% |
| !!! | CAAGCTAAAAAAGATTTTAA+TGG | + | chr6_4:15062317-15062336 | None:intergenic | 20.0% |
| !! | AATATTCAAAGAATACAAGT+TGG | + | chr6_4:15063242-15063261 | None:intergenic | 20.0% |
| !! | ATGATTTAGAAAACATCATT+CGG | + | chr6_4:15063489-15063508 | None:intergenic | 20.0% |
| !!! | AATGATGTTTTCTAAATCAT+CGG | - | chr6_4:15063489-15063508 | Msa0978900:CDS | 20.0% |
| !! | AAAAATCAATTGTTGAATTG+AGG | - | chr6_4:15063706-15063725 | Msa0978900:intron | 20.0% |
| ! | AAGAGATGTACCTTAAAATT+TGG | + | chr6_4:15057857-15057876 | None:intergenic | 25.0% |
| ! | TAACTAACATTGAAGTATGT+GGG | + | chr6_4:15057893-15057912 | None:intergenic | 25.0% |
| ! | ATAACTAACATTGAAGTATG+TGG | + | chr6_4:15057894-15057913 | None:intergenic | 25.0% |
| ! | ATCAGCAATATTTGTCAAAT+AGG | + | chr6_4:15057968-15057987 | None:intergenic | 25.0% |
| !! | TTTTATGTTTAAGCAACTTG+GGG | + | chr6_4:15058152-15058171 | None:intergenic | 25.0% |
| !! | GTTTTATGTTTAAGCAACTT+GGG | + | chr6_4:15058153-15058172 | None:intergenic | 25.0% |
| !! | TGTTTTATGTTTAAGCAACT+TGG | + | chr6_4:15058154-15058173 | None:intergenic | 25.0% |
| !!! | TTCTGAAATTTGACAACTTT+TGG | + | chr6_4:15058189-15058208 | None:intergenic | 25.0% |
| !!! | ACTTTACTTATGTTGCTTTT+TGG | - | chr6_4:15058246-15058265 | Msa0978900:CDS | 25.0% |
| !!! | GATATTTTACCTTTAAGGAT+AGG | - | chr6_4:15058838-15058857 | Msa0978900:intron | 25.0% |
| ! | ATATTTCTTCCTATCCTTAA+AGG | + | chr6_4:15058850-15058869 | None:intergenic | 25.0% |
| !! | TATGAACAAACCGATATTTT+CGG | - | chr6_4:15059111-15059130 | Msa0978900:CDS | 25.0% |
| !!! | TTTTAGTCTTTGTATCAAAG+CGG | + | chr6_4:15059143-15059162 | None:intergenic | 25.0% |
| ! | ATCTAGCATCTTAATATTTC+AGG | + | chr6_4:15059170-15059189 | None:intergenic | 25.0% |
| ! | TGAAACATTATTAACCATGT+GGG | - | chr6_4:15059275-15059294 | Msa0978900:CDS | 25.0% |
| !! | AAATTCGACGACTTTTTAAA+TGG | + | chr6_4:15059312-15059331 | None:intergenic | 25.0% |
| ! | TTTAAAAAGTCGTCGAATTT+AGG | - | chr6_4:15059312-15059331 | Msa0978900:intron | 25.0% |
| !!! | TTTGCTGTATATTTTTGTTC+TGG | - | chr6_4:15059458-15059477 | Msa0978900:CDS | 25.0% |
| !!! | TAGATTTACATTGATAATGG+AGG | - | chr6_4:15059505-15059524 | Msa0978900:intron | 25.0% |
| ! | ATTTCTGATAAGAATCCTAT+AGG | + | chr6_4:15059852-15059871 | None:intergenic | 25.0% |
| ! | ATTTCTCATACAATTCAGAT+TGG | - | chr6_4:15060299-15060318 | Msa0978900:CDS | 25.0% |
| !!! | TCGATTTTTAACTTTGATCT+AGG | - | chr6_4:15060663-15060682 | Msa0978900:intron | 25.0% |
| !!! | TTTTTAACTTTGATCTAGGT+TGG | - | chr6_4:15060667-15060686 | Msa0978900:intron | 25.0% |
| ! | GTTCAAATATGTGGTTAATT+AGG | - | chr6_4:15060825-15060844 | Msa0978900:intron | 25.0% |
| ! | AATATGTGGTTAATTAGGTT+CGG | - | chr6_4:15060830-15060849 | Msa0978900:intron | 25.0% |
| !! | GCTAATGAAGTTTAAAATCT+CGG | + | chr6_4:15060918-15060937 | None:intergenic | 25.0% |
| ! | AAATATCAGTGTTCAAATTC+TGG | + | chr6_4:15061124-15061143 | None:intergenic | 25.0% |
| !! | ACTATTTTACTCCATATTTC+TGG | - | chr6_4:15061516-15061535 | Msa0978900:CDS | 25.0% |
| ! | TGAATCATTATCCAGAAATA+TGG | + | chr6_4:15061530-15061549 | None:intergenic | 25.0% |
| ! | GCAATCTACAAAAATTCTTA+AGG | + | chr6_4:15061825-15061844 | None:intergenic | 25.0% |
| ! | CAACAATTTACCAAAAAAGT+TGG | + | chr6_4:15061847-15061866 | None:intergenic | 25.0% |
| ! | TAGAGAAAGATTCAATACAT+TGG | + | chr6_4:15061882-15061901 | None:intergenic | 25.0% |
| ! | TTGTAAGTGCTTTAATCTTA+TGG | - | chr6_4:15061907-15061926 | Msa0978900:CDS | 25.0% |
| !! | ATTAGTTCTTGTATCAATAC+AGG | - | chr6_4:15062537-15062556 | Msa0978900:intron | 25.0% |
| ! | ATAAAGGCAAAATGAAGATT+AGG | + | chr6_4:15062802-15062821 | None:intergenic | 25.0% |
| !!! | TACAAAGTATTGTCAAATAG+TGG | - | chr6_4:15063066-15063085 | Msa0978900:intron | 25.0% |
| !!! | TTTTATGAACTTCTAAGACA+TGG | - | chr6_4:15063880-15063899 | Msa0978900:CDS | 25.0% |
| ! | CAAATGCGTTCCAAATTTTA+AGG | - | chr6_4:15057844-15057863 | Msa0978900:intron | 30.0% |
| TTTATCTAAATGCTTGTCTC+AGG | - | chr6_4:15057990-15058009 | Msa0978900:intron | 30.0% | |
| TTATCTAAATGCTTGTCTCA+GGG | - | chr6_4:15057991-15058010 | Msa0978900:intron | 30.0% | |
| ! | CTTCTTAGCTCAATTTTCAT+TGG | - | chr6_4:15058039-15058058 | Msa0978900:intron | 30.0% |
| TTTCAATCTAGTGAATTGGA+TGG | - | chr6_4:15058065-15058084 | Msa0978900:intron | 30.0% | |
| ! | TGTTTAAGAAGACTTGTTCA+TGG | + | chr6_4:15058110-15058129 | None:intergenic | 30.0% |
| GAAATATAATGGTGCTCTAT+TGG | - | chr6_4:15058206-15058225 | Msa0978900:CDS | 30.0% | |
| ATAAGATTGTGGCACAAAAA+AGG | + | chr6_4:15058523-15058542 | None:intergenic | 30.0% | |
| ATGCATCATGTAAGGATATT+AGG | - | chr6_4:15058690-15058709 | Msa0978900:intron | 30.0% | |
| TAGTATACAATTGTTTCAGG+AGG | - | chr6_4:15058756-15058775 | Msa0978900:CDS | 30.0% | |
| ! | ATATTGTTGTTACTCTCACT+TGG | - | chr6_4:15058866-15058885 | Msa0978900:intron | 30.0% |
| ! | ACACTTTCTTTTCGTAAACA+AGG | - | chr6_4:15058895-15058914 | Msa0978900:intron | 30.0% |
| GTTAATAATGTTTCAGCACA+AGG | + | chr6_4:15059270-15059289 | None:intergenic | 30.0% | |
| CTGAAACATTATTAACCATG+TGG | - | chr6_4:15059274-15059293 | Msa0978900:CDS | 30.0% | |
| GAAACATTATTAACCATGTG+GGG | - | chr6_4:15059276-15059295 | Msa0978900:CDS | 30.0% | |
| ! | TCTCTAAGAGTTTGTATATG+AGG | + | chr6_4:15059547-15059566 | None:intergenic | 30.0% |
| AAACTCTTAGAGAATTTCCT+AGG | - | chr6_4:15059554-15059573 | Msa0978900:intron | 30.0% | |
| AACTCTTAGAGAATTTCCTA+GGG | - | chr6_4:15059555-15059574 | Msa0978900:intron | 30.0% | |
| ! | TGAAATCTGATTGATTCTTC+TGG | + | chr6_4:15059648-15059667 | None:intergenic | 30.0% |
| !!! | ATTTTGTGCAAAGTTCTGAA+GGG | + | chr6_4:15059741-15059760 | None:intergenic | 30.0% |
| TTCAGAACTTTGCACAAAAT+CGG | - | chr6_4:15059741-15059760 | Msa0978900:intron | 30.0% | |
| AGTGATTATCTCTATCCTAT+AGG | - | chr6_4:15059834-15059853 | Msa0978900:intron | 30.0% | |
| ! | GTGGAATAACTTGTATTTGA+AGG | + | chr6_4:15059875-15059894 | None:intergenic | 30.0% |
| ATACAAGTTATTCCACTTCA+AGG | - | chr6_4:15059879-15059898 | Msa0978900:intron | 30.0% | |
| AACTTTATGAGAGTTTGAGA+AGG | + | chr6_4:15060057-15060076 | None:intergenic | 30.0% | |
| TGCTACATATGGTTTCTTAT+TGG | + | chr6_4:15060177-15060196 | None:intergenic | 30.0% | |
| TTTCAAATAATGCACGCATT+AGG | - | chr6_4:15060407-15060426 | Msa0978900:intron | 30.0% | |
| ! | AGTACAAGTTCCTATTGATT+TGG | - | chr6_4:15060430-15060449 | Msa0978900:intron | 30.0% |
| ! | GGAAAAACATGCAATTGTTT+TGG | + | chr6_4:15060563-15060582 | None:intergenic | 30.0% |
| GTTAATGTGTTGTCAAATAG+TGG | - | chr6_4:15061073-15061092 | Msa0978900:CDS | 30.0% | |
| !!! | TTTTGACTTTGTGAAATGGA+AGG | + | chr6_4:15061192-15061211 | None:intergenic | 30.0% |
| TTCCATTTCACAAAGTCAAA+AGG | - | chr6_4:15061191-15061210 | Msa0978900:CDS | 30.0% | |
| !!! | TTCCTTTTGACTTTGTGAAA+TGG | + | chr6_4:15061196-15061215 | None:intergenic | 30.0% |
| AACTGTGAAATAACTGTTGT+TGG | - | chr6_4:15061350-15061369 | Msa0978900:intron | 30.0% | |
| !!! | TTGTAGATTGCCAACTTTTT+TGG | - | chr6_4:15061834-15061853 | Msa0978900:intron | 30.0% |
| ! | TTATGGTAGTCATATTTTGC+AGG | - | chr6_4:15061924-15061943 | Msa0978900:CDS | 30.0% |
| !! | TATTCCAGTTGATTTGGAAA+GGG | + | chr6_4:15061954-15061973 | None:intergenic | 30.0% |
| !! | TTATTCCAGTTGATTTGGAA+AGG | + | chr6_4:15061955-15061974 | None:intergenic | 30.0% |
| AAACGTTATTCCAGTTGATT+TGG | + | chr6_4:15061960-15061979 | None:intergenic | 30.0% | |
| TAAGAGGAACAAGTAACATA+AGG | + | chr6_4:15062117-15062136 | None:intergenic | 30.0% | |
| TGAAAAGCTCAAATGTTAAG+AGG | + | chr6_4:15062133-15062152 | None:intergenic | 30.0% | |
| AGGAAAGATTTGAACTTTCT+TGG | - | chr6_4:15062194-15062213 | Msa0978900:intron | 30.0% | |
| AGATTTGAACTTTCTTGGTT+TGG | - | chr6_4:15062199-15062218 | Msa0978900:intron | 30.0% | |
| ATGAAAAAGGGTAGCAAAAA+AGG | + | chr6_4:15062270-15062289 | None:intergenic | 30.0% | |
| ATACAAGAACTAATTCTCCA+GGG | + | chr6_4:15062531-15062550 | None:intergenic | 30.0% | |
| ATTTGATCCATCTTTATCAC+AGG | + | chr6_4:15062673-15062692 | None:intergenic | 30.0% | |
| ! | CTTTAGTAAATGATGGAGAA+AGG | + | chr6_4:15062779-15062798 | None:intergenic | 30.0% |
| ! | GATTAGGCTTTAGTAAATGA+TGG | + | chr6_4:15062786-15062805 | None:intergenic | 30.0% |
| TGGACACTGCAAAAAAATAA+AGG | + | chr6_4:15062818-15062837 | None:intergenic | 30.0% | |
| ! | GTTCAGGTTTATTGAAATCA+GGG | + | chr6_4:15062843-15062862 | None:intergenic | 30.0% |
| ! | TGTTCAGGTTTATTGAAATC+AGG | + | chr6_4:15062844-15062863 | None:intergenic | 30.0% |
| TCAATAAACCTGAACATAGA+TGG | - | chr6_4:15062848-15062867 | Msa0978900:intron | 30.0% | |
| ACTGTTATTGTTCTGTGATA+CGG | - | chr6_4:15063036-15063055 | Msa0978900:intron | 30.0% | |
| TTAGATTCTCAACATTGATC+AGG | - | chr6_4:15063288-15063307 | Msa0978900:intron | 30.0% | |
| !! | TTGCAAATGTAAGCTTGTTT+TGG | - | chr6_4:15063372-15063391 | Msa0978900:intron | 30.0% |
| !!! | AAAAACATGTTTTAGAGCGT+GGG | - | chr6_4:15063452-15063471 | Msa0978900:CDS | 30.0% |
| TAAAACCACGTGTATTGTGT+AGG | + | chr6_4:15057768-15057787 | None:intergenic | 35.0% | |
| GCAGTTTCAATCTAGTGAAT+TGG | - | chr6_4:15058061-15058080 | Msa0978900:intron | 35.0% | |
| GTTCATGGAGAATCTTCATA+AGG | + | chr6_4:15058095-15058114 | None:intergenic | 35.0% | |
| GAATGAATGTGTAAGACACT+TGG | + | chr6_4:15058352-15058371 | None:intergenic | 35.0% | |
| AGTGTCTTACACATTCATTC+AGG | - | chr6_4:15058352-15058371 | Msa0978900:intron | 35.0% | |
| GTGTCTTACACATTCATTCA+GGG | - | chr6_4:15058353-15058372 | Msa0978900:intron | 35.0% | |
| TGTCAACTCATTCAACCATA+AGG | - | chr6_4:15058481-15058500 | Msa0978900:intron | 35.0% | |
| GAACGAAAATGCATCATGTA+AGG | - | chr6_4:15058682-15058701 | Msa0978900:intron | 35.0% | |
| ACATACTCTATCTGTCATCA+TGG | - | chr6_4:15058714-15058733 | Msa0978900:intron | 35.0% | |
| GTCACATTTCTTAGCAACTT+AGG | - | chr6_4:15058803-15058822 | Msa0978900:CDS | 35.0% | |
| GTTATAGCACTATAACGTAG+CGG | - | chr6_4:15059086-15059105 | Msa0978900:intron | 35.0% | |
| !! | TGTTCTGGCTCTAAGTATTA+TGG | - | chr6_4:15059473-15059492 | Msa0978900:CDS | 35.0% |
| !! | GATAATGGAGGAAAGTTGAA+TGG | - | chr6_4:15059517-15059536 | Msa0978900:intron | 35.0% |
| !! | GATTTTGTGCAAAGTTCTGA+AGG | + | chr6_4:15059742-15059761 | None:intergenic | 35.0% |
| TCATACAAAAAGCCTTGAAG+TGG | + | chr6_4:15059894-15059913 | None:intergenic | 35.0% | |
| GACAAGCTATCAGAGATTAA+AGG | - | chr6_4:15059912-15059931 | Msa0978900:intron | 35.0% | |
| ! | AAAGTTCTAGCATCAACTGT+CGG | - | chr6_4:15060071-15060090 | Msa0978900:intron | 35.0% |
| AGGCATACAATTGCTACATA+TGG | + | chr6_4:15060188-15060207 | None:intergenic | 35.0% | |
| TCTATCGATATGAGAACTTG+AGG | + | chr6_4:15060265-15060284 | None:intergenic | 35.0% | |
| TCTCATACAATTCAGATTGG+AGG | - | chr6_4:15060302-15060321 | Msa0978900:CDS | 35.0% | |
| AAAAACAAAACCCTGACATC+TGG | + | chr6_4:15060372-15060391 | None:intergenic | 35.0% | |
| !!! | TGTCAGGGTTTTGTTTTTGT+TGG | - | chr6_4:15060374-15060393 | Msa0978900:intron | 35.0% |
| !! | ACAAGTTCCTATTGATTTGG+TGG | - | chr6_4:15060433-15060452 | Msa0978900:intron | 35.0% |
| !!! | ATCCAAAAGATTTTTGGTGC+AGG | - | chr6_4:15060525-15060544 | Msa0978900:intron | 35.0% |
| ! | TTCCTGCACCAAAAATCTTT+TGG | + | chr6_4:15060530-15060549 | None:intergenic | 35.0% |
| ! | TTGCATGTTTTTCCTTCTCA+TGG | - | chr6_4:15060569-15060588 | Msa0978900:intron | 35.0% |
| ! | TTTTCCTTCTCATGGACTTT+TGG | - | chr6_4:15060577-15060596 | Msa0978900:intron | 35.0% |
| CCAATTTCATCCAATGTTAC+AGG | + | chr6_4:15060711-15060730 | None:intergenic | 35.0% | |
| CCTGTAACATTGGATGAAAT+TGG | - | chr6_4:15060708-15060727 | Msa0978900:intron | 35.0% | |
| AACTGCTTCAACCATCTAAA+TGG | - | chr6_4:15060948-15060967 | Msa0978900:intron | 35.0% | |
| GACTTTGACAACCATTTAGA+TGG | + | chr6_4:15060962-15060981 | None:intergenic | 35.0% | |
| TGTTCAAATTTCGACGACAT+TGG | + | chr6_4:15061019-15061038 | None:intergenic | 35.0% | |
| ATTCTTGATCAACTAAGCCA+AGG | - | chr6_4:15061326-15061345 | Msa0978900:intron | 35.0% | |
| ! | CAGTTATTTCACAGTTTCCT+TGG | + | chr6_4:15061346-15061365 | None:intergenic | 35.0% |
| TTGAGAATGCTTCAGTAGTA+TGG | - | chr6_4:15061432-15061451 | Msa0978900:intron | 35.0% | |
| TGAGAATGCTTCAGTAGTAT+GGG | - | chr6_4:15061433-15061452 | Msa0978900:intron | 35.0% | |
| GTAGTATGGGAATTTCTCAA+AGG | - | chr6_4:15061446-15061465 | Msa0978900:intron | 35.0% | |
| ATCTGTTCTGTAAACATCAG+TGG | - | chr6_4:15061550-15061569 | Msa0978900:CDS | 35.0% | |
| ! | GTTGTCAAATAGTGGTGTTT+TGG | - | chr6_4:15061672-15061691 | Msa0978900:CDS | 35.0% |
| GATAGCTTATGCAAAGTTCA+AGG | + | chr6_4:15061766-15061785 | None:intergenic | 35.0% | |
| ! | ACATTTGAGCTTTTCATGAC+AGG | - | chr6_4:15062137-15062156 | Msa0978900:intron | 35.0% |
| !! | TGGACTTTTTCTTCTCGAAA+TGG | - | chr6_4:15062163-15062182 | Msa0978900:intron | 35.0% |
| TTCTTCTCGAAATGGCAAAA+AGG | - | chr6_4:15062171-15062190 | Msa0978900:intron | 35.0% | |
| ! | TGGTTTGGAGATGAATGAAA+AGG | - | chr6_4:15062214-15062233 | Msa0978900:intron | 35.0% |
| ! | AACGGTTTGGCATAAAGAAT+GGG | - | chr6_4:15062361-15062380 | Msa0978900:intron | 35.0% |
| GATACAAGAACTAATTCTCC+AGG | + | chr6_4:15062532-15062551 | None:intergenic | 35.0% | |
| TCTTAGTCCTGTGATAAAGA+TGG | - | chr6_4:15062663-15062682 | Msa0978900:intron | 35.0% | |
| GGTTTATTGAAATCAGGGTT+TGG | + | chr6_4:15062838-15062857 | None:intergenic | 35.0% | |
| ACGATTTCAATTGACAACAC+TGG | - | chr6_4:15063146-15063165 | Msa0978900:intron | 35.0% | |
| !!! | CAATTGACAACACTGGTTTT+CGG | - | chr6_4:15063153-15063172 | Msa0978900:CDS | 35.0% |
| !!! | TGTAAGCTTGTTTTGGAGAA+TGG | - | chr6_4:15063379-15063398 | Msa0978900:intron | 35.0% |
| TTTCATCAAGCCAATCACTT+TGG | + | chr6_4:15063405-15063424 | None:intergenic | 35.0% | |
| ! | ATGAAAACCCATTTGGAGTT+AGG | - | chr6_4:15063419-15063438 | Msa0978900:intron | 35.0% |
| AATCTGACCTAACTCCAAAT+GGG | + | chr6_4:15063429-15063448 | None:intergenic | 35.0% | |
| ! | ATTTGGAGTTAGGTCAGATT+GGG | - | chr6_4:15063429-15063448 | Msa0978900:intron | 35.0% |
| !!! | GAAAAACATGTTTTAGAGCG+TGG | - | chr6_4:15063451-15063470 | Msa0978900:CDS | 35.0% |
| !!! | AAAACATGTTTTAGAGCGTG+GGG | - | chr6_4:15063453-15063472 | Msa0978900:CDS | 35.0% |
| GAAAACATCATTCGGTACAT+AGG | + | chr6_4:15063481-15063500 | None:intergenic | 35.0% | |
| ATCGGAGATAACTGAAGTTT+CGG | - | chr6_4:15063507-15063526 | Msa0978900:CDS | 35.0% | |
| TTAATCCATCAACCCTTTGA+TGG | - | chr6_4:15063558-15063577 | Msa0978900:CDS | 35.0% | |
| GCTCAAAGTAAACCATCAAA+GGG | + | chr6_4:15063573-15063592 | None:intergenic | 35.0% | |
| AGCTCAAAGTAAACCATCAA+AGG | + | chr6_4:15063574-15063593 | None:intergenic | 35.0% | |
| TATGTATGGTTCAACTCGTT+TGG | + | chr6_4:15063607-15063626 | None:intergenic | 35.0% | |
| !! | GGCTTGAACTAATTTTGAGT+TGG | - | chr6_4:15063727-15063746 | Msa0978900:intron | 35.0% |
| CTAACATGTCTATGTCAACT+TGG | + | chr6_4:15063818-15063837 | None:intergenic | 35.0% | |
| AGACATGTTAGTTGTGTTGT+AGG | - | chr6_4:15063827-15063846 | Msa0978900:CDS | 35.0% | |
| TTTGAAGGGTTAGGGTGATA+AGG | - | chr6_4:15058950-15058969 | Msa0978900:intron | 40.0% | |
| AATACTGTTATGCGATAGCG+CGG | + | chr6_4:15059008-15059027 | None:intergenic | 40.0% | |
| CTTGTGTCGCAGAATAATAG+TGG | + | chr6_4:15059038-15059057 | None:intergenic | 40.0% | |
| GCGGATATGACCGAAAATAT+CGG | + | chr6_4:15059124-15059143 | None:intergenic | 40.0% | |
| ! | ATGATGTGCGGAAAAAGCAT+AGG | - | chr6_4:15059236-15059255 | Msa0978900:intron | 40.0% |
| ATCGCAATGATCGTCGTTAT+CGG | - | chr6_4:15059395-15059414 | Msa0978900:intron | 40.0% | |
| TCTTAGAGAATTTCCTAGGG+AGG | - | chr6_4:15059558-15059577 | Msa0978900:intron | 40.0% | |
| GCTATTTGGAAAAGTCGTCA+TGG | - | chr6_4:15059582-15059601 | Msa0978900:intron | 40.0% | |
| AGTTGCAGGTACATTCGTAA+GGG | - | chr6_4:15059768-15059787 | Msa0978900:intron | 40.0% | |
| TAATGCTGTAACAGCAGAAG+AGG | + | chr6_4:15060208-15060227 | None:intergenic | 40.0% | |
| CATACAATTCAGATTGGAGG+CGG | - | chr6_4:15060305-15060324 | Msa0978900:CDS | 40.0% | |
| !! | TTTTTAGCCTCCAGATGTCA+GGG | - | chr6_4:15060359-15060378 | Msa0978900:CDS | 40.0% |
| TTACGGTCCACCAAATCAAT+AGG | + | chr6_4:15060443-15060462 | None:intergenic | 40.0% | |
| !! | TATTGATTTGGTGGACCGTA+AGG | - | chr6_4:15060442-15060461 | Msa0978900:intron | 40.0% |
| GAGCTTCACTAAATGCCTTA+CGG | + | chr6_4:15060460-15060479 | None:intergenic | 40.0% | |
| GTTGAAGCAGTTCAAATGTG+TGG | + | chr6_4:15060940-15060959 | None:intergenic | 40.0% | |
| ! | TTGTTCTGTAACGTGTCGTT+CGG | - | chr6_4:15061044-15061063 | Msa0978900:intron | 40.0% |
| ! | GACGAATGGAGCATCTAAAT+TGG | - | chr6_4:15061298-15061317 | Msa0978900:CDS | 40.0% |
| TATCAAGAGCCAAAACACCA+GGG | + | chr6_4:15061481-15061500 | None:intergenic | 40.0% | |
| ! | TACCAAGCGTTGTCAAATAG+TGG | - | chr6_4:15061664-15061683 | Msa0978900:CDS | 40.0% |
| CATACCCTTTCCAAATCAAC+TGG | - | chr6_4:15061947-15061966 | Msa0978900:CDS | 40.0% | |
| CAATCTCTTGTCGTTGACAT+TGG | - | chr6_4:15061994-15062013 | Msa0978900:CDS | 40.0% | |
| TTCTCGAAATGGCAAAAAGG+AGG | - | chr6_4:15062174-15062193 | Msa0978900:intron | 40.0% | |
| AAAAAGGCTAGGAACAAGGT+AGG | + | chr6_4:15062254-15062273 | None:intergenic | 40.0% | |
| AGCAAAAAAGGCTAGGAACA+AGG | + | chr6_4:15062258-15062277 | None:intergenic | 40.0% | |
| AAAGGGTAGCAAAAAAGGCT+AGG | + | chr6_4:15062265-15062284 | None:intergenic | 40.0% | |
| ! | CAACGGTTTGGCATAAAGAA+TGG | - | chr6_4:15062360-15062379 | Msa0978900:intron | 40.0% |
| TCAATCGTTTCTTCTTACCC+TGG | - | chr6_4:15062511-15062530 | Msa0978900:intron | 40.0% | |
| GAGATCCTTAATTGAAGCAG+TGG | - | chr6_4:15062882-15062901 | Msa0978900:intron | 40.0% | |
| ATCCTTAATTGAAGCAGTGG+TGG | - | chr6_4:15062885-15062904 | Msa0978900:intron | 40.0% | |
| ATCCACCACTGCTTCAATTA+AGG | + | chr6_4:15062890-15062909 | None:intergenic | 40.0% | |
| ACTACAACTCTATAGCGTAG+CGG | - | chr6_4:15063003-15063022 | Msa0978900:intron | 40.0% | |
| ! | GGTCTTTTTGCAATCTGATG+TGG | - | chr6_4:15063309-15063328 | Msa0978900:intron | 40.0% |
| TTTGCAATCTGATGTGGAAG+AGG | - | chr6_4:15063315-15063334 | Msa0978900:intron | 40.0% | |
| TGGCTTGATGAAAACCCATT+TGG | - | chr6_4:15063412-15063431 | Msa0978900:intron | 40.0% | |
| CAATCTGACCTAACTCCAAA+TGG | + | chr6_4:15063430-15063449 | None:intergenic | 40.0% | |
| ! | CATTTGGAGTTAGGTCAGAT+TGG | - | chr6_4:15063428-15063447 | Msa0978900:intron | 40.0% |
| GTAAACCATCAAAGGGTTGA+TGG | + | chr6_4:15063566-15063585 | None:intergenic | 40.0% | |
| AGTTGAACTCGAGCTATGTA+TGG | + | chr6_4:15063621-15063640 | None:intergenic | 40.0% | |
| ! | ACCGATTCATTGTCAGTCTT+AGG | - | chr6_4:15063750-15063769 | Msa0978900:intron | 40.0% |
| CCCTAAGACTGACAATGAAT+CGG | + | chr6_4:15063754-15063773 | None:intergenic | 40.0% | |
| CCGATTCATTGTCAGTCTTA+GGG | - | chr6_4:15063751-15063770 | Msa0978900:intron | 40.0% | |
| ATGTCTATGTCAACTTGGCA+TGG | + | chr6_4:15063813-15063832 | None:intergenic | 40.0% | |
| CACAACCTACACAATACACG+TGG | - | chr6_4:15057760-15057779 | Msa0978900:intron | 45.0% | |
| GTTCACTGCAACACAGAACA+AGG | + | chr6_4:15057818-15057837 | None:intergenic | 45.0% | |
| GACTGCGCAATACACATTCA+GGG | + | chr6_4:15058290-15058309 | None:intergenic | 45.0% | |
| TGACTGCGCAATACACATTC+AGG | + | chr6_4:15058291-15058310 | None:intergenic | 45.0% | |
| ACAGGAAATGGAGAGTTAGC+AGG | - | chr6_4:15058452-15058471 | Msa0978900:intron | 45.0% | |
| GGTGATAAGGATGTAACTCC+TGG | - | chr6_4:15058963-15058982 | Msa0978900:intron | 45.0% | |
| TATTTGACAACACTGAGGCC+AGG | + | chr6_4:15058984-15059003 | None:intergenic | 45.0% | |
| CACATCATGCCTAAGTCCAA+AGG | + | chr6_4:15059224-15059243 | None:intergenic | 45.0% | |
| TTGGACTTAGGCATGATGTG+CGG | - | chr6_4:15059224-15059243 | Msa0978900:intron | 45.0% | |
| TTTCCTAGGGAGGAGCTATT+TGG | - | chr6_4:15059568-15059587 | Msa0978900:intron | 45.0% | |
| TTTCCAAATAGCTCCTCCCT+AGG | + | chr6_4:15059574-15059593 | None:intergenic | 45.0% | |
| TTTACATGAAGCCGGAGCAA+AGG | - | chr6_4:15059690-15059709 | Msa0978900:CDS | 45.0% | |
| ACAAAATCGGTTGCAGTTGC+AGG | - | chr6_4:15059754-15059773 | Msa0978900:intron | 45.0% | |
| CAGTTGCAGGTACATTCGTA+AGG | - | chr6_4:15059767-15059786 | Msa0978900:intron | 45.0% | |
| TTCTGCTATGCTTGTCTAGC+TGG | - | chr6_4:15060104-15060123 | Msa0978900:intron | 45.0% | |
| CAGAGAAAGCAGCTTCCTTT+CGG | - | chr6_4:15060336-15060355 | Msa0978900:CDS | 45.0% | |
| TCTGGAGGCTAAAAACCGAA+AGG | + | chr6_4:15060354-15060373 | None:intergenic | 45.0% | |
| !!! | GTTTTTAGCCTCCAGATGTC+AGG | - | chr6_4:15060358-15060377 | Msa0978900:CDS | 45.0% |
| AACAAAACCCTGACATCTGG+AGG | + | chr6_4:15060369-15060388 | None:intergenic | 45.0% | |
| CCATCCAAAAGTCCATGAGA+AGG | + | chr6_4:15060584-15060603 | None:intergenic | 45.0% | |
| ! | CCTTCTCATGGACTTTTGGA+TGG | - | chr6_4:15060581-15060600 | Msa0978900:intron | 45.0% |
| GCGGCAAGAGTTCAAATATG+TGG | - | chr6_4:15060816-15060835 | Msa0978900:intron | 45.0% | |
| CTTCGATCAGCGAATTTCAC+TGG | + | chr6_4:15061269-15061288 | None:intergenic | 45.0% | |
| ! | AAGAAAGCTCCCTGGTGTTT+TGG | - | chr6_4:15061469-15061488 | Msa0978900:CDS | 45.0% |
| CTATCAAGAGCCAAAACACC+AGG | + | chr6_4:15061482-15061501 | None:intergenic | 45.0% | |
| GTGTCAAATAGCTGCCATAG+TGG | - | chr6_4:15061572-15061591 | Msa0978900:CDS | 45.0% | |
| CACCACTATTTGACAACGCT+TGG | + | chr6_4:15061669-15061688 | None:intergenic | 45.0% | |
| !! | GTTTTGGCACTACAGCTTAG+CGG | - | chr6_4:15061688-15061707 | Msa0978900:CDS | 45.0% |
| CAACACAGTTCAAGCACAAG+AGG | + | chr6_4:15061796-15061815 | None:intergenic | 45.0% | |
| CTTGTCGTTGACATTGGAAG+TGG | - | chr6_4:15062000-15062019 | Msa0978900:CDS | 45.0% | |
| ! | GAGCTTTTCATGACAGGCAA+TGG | - | chr6_4:15062143-15062162 | Msa0978900:intron | 45.0% |
| !!! | TTAGCTTGTTTTGCGCTGTC+TGG | - | chr6_4:15062329-15062348 | Msa0978900:intron | 45.0% |
| ! | TGTATGCATGGTAGCGCTAA+TGG | + | chr6_4:15062611-15062630 | None:intergenic | 45.0% |
| CATCAACGGAGATGTATGCA+TGG | + | chr6_4:15062623-15062642 | None:intergenic | 45.0% | |
| AGCGTTCTCCATCTATGTTC+AGG | + | chr6_4:15062859-15062878 | None:intergenic | 45.0% | |
| TGGAGAATGGCCAAAGTGAT+TGG | - | chr6_4:15063392-15063411 | Msa0978900:intron | 45.0% | |
| TGCTTGTCTCAGGGAGTGAA+TGG | - | chr6_4:15058000-15058019 | Msa0978900:intron | 50.0% | |
| ! | GGTGCTCTATTGGCTATGCA+AGG | - | chr6_4:15058216-15058235 | Msa0978900:CDS | 50.0% |
| GCGGCTATTTGACAACACTG+AGG | + | chr6_4:15058989-15059008 | None:intergenic | 50.0% | |
| ! | TGCAGACAAGGGTGTGTGTT+AGG | + | chr6_4:15059198-15059217 | None:intergenic | 50.0% |
| AACACACACCCTTGTCTGCA+AGG | - | chr6_4:15059198-15059217 | Msa0978900:intron | 50.0% | |
| TCCAAAGGCCTTGCAGACAA+GGG | + | chr6_4:15059209-15059228 | None:intergenic | 50.0% | |
| TCTGCAAGGCCTTTGGACTT+AGG | - | chr6_4:15059212-15059231 | Msa0978900:intron | 50.0% | |
| TGGTTAACGCAATCCCCACA+TGG | + | chr6_4:15059292-15059311 | None:intergenic | 50.0% | |
| AGGTCATCCTGGTCAGTGAT+TGG | - | chr6_4:15059710-15059729 | Msa0978900:intron | 50.0% | |
| GGTTTGTCCAATCACTGACC+AGG | + | chr6_4:15059720-15059739 | None:intergenic | 50.0% | |
| TGACCTGGGACCTGTAACAT+TGG | - | chr6_4:15060698-15060717 | Msa0978900:intron | 50.0% | |
| CATCCAATGTTACAGGTCCC+AGG | + | chr6_4:15060704-15060723 | None:intergenic | 50.0% | |
| CGAAGTGAACACACGACGAA+TGG | - | chr6_4:15061284-15061303 | Msa0978900:intron | 50.0% | |
| CTCAAAGGAAGAAAGCTCCC+TGG | - | chr6_4:15061461-15061480 | Msa0978900:CDS | 50.0% | |
| ATAGAGCTGTAGCGCCACTA+TGG | + | chr6_4:15061589-15061608 | None:intergenic | 50.0% | |
| GCTGTCTGGATTCGACTCAA+CGG | - | chr6_4:15062343-15062362 | Msa0978900:intron | 50.0% | |
| CTGGATTCGACTCAACGGTT+TGG | - | chr6_4:15062348-15062367 | Msa0978900:intron | 50.0% | |
| AGTGGTGGCAGTGACATCAA+CGG | + | chr6_4:15062637-15062656 | None:intergenic | 50.0% | |
| ACAGGACTAAGATGCTGCAG+TGG | + | chr6_4:15062655-15062674 | None:intergenic | 50.0% | |
| TCTTCTCGCATCTGGTGGAA+AGG | - | chr6_4:15062909-15062928 | Msa0978900:intron | 50.0% | |
| ACCCTTGTCTGCAAGGCCTT+TGG | - | chr6_4:15059205-15059224 | Msa0978900:intron | 55.0% | |
| GTCCAAAGGCCTTGCAGACA+AGG | + | chr6_4:15059210-15059229 | None:intergenic | 55.0% | |
| GACCAGGATGACCTTTGCTC+CGG | + | chr6_4:15059704-15059723 | None:intergenic | 55.0% | |
| AGGTTGGATGCCTGTTGACC+TGG | - | chr6_4:15060683-15060702 | Msa0978900:intron | 55.0% | |
| GGTTGGATGCCTGTTGACCT+GGG | - | chr6_4:15060684-15060703 | Msa0978900:intron | 55.0% | |
| GTTACAGGTCCCAGGTCAAC+AGG | + | chr6_4:15060696-15060715 | None:intergenic | 55.0% | |
| CTGGTACGCTAGTGCTACAG+CGG | + | chr6_4:15061105-15061124 | None:intergenic | 55.0% | |
| GGACTAAGATGCTGCAGTGG+TGG | + | chr6_4:15062652-15062671 | None:intergenic | 55.0% | |
| !! | GTGGTGGATCTTCTCGCATC+TGG | - | chr6_4:15062901-15062920 | Msa0978900:intron | 55.0% |
| GTGGATCTTCTCGCATCTGG+TGG | - | chr6_4:15062904-15062923 | Msa0978900:intron | 55.0% | |
| AGCCGGAGCAAAGGTCATCC+TGG | - | chr6_4:15059699-15059718 | Msa0978900:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 15057744 | 15063911 | 15057744 | ID=Msa0978900;Name=Msa0978900 |
| chr6_4 | mRNA | 15057744 | 15063911 | 15057744 | ID=Msa0978900-mRNA-1;Parent=Msa0978900;Name=Msa0978900-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.53|0.31|0.93|0.6|0.5|16|0|669 |
| chr6_4 | exon | 15063790 | 15063911 | 15063790 | ID=Msa0978900-mRNA-1:exon:4917;Parent=Msa0978900-mRNA-1 |
| chr6_4 | exon | 15063439 | 15063590 | 15063439 | ID=Msa0978900-mRNA-1:exon:4916;Parent=Msa0978900-mRNA-1 |
| chr6_4 | exon | 15063153 | 15063199 | 15063153 | ID=Msa0978900-mRNA-1:exon:4915;Parent=Msa0978900-mRNA-1 |
| chr6_4 | exon | 15061880 | 15062123 | 15061880 | ID=Msa0978900-mRNA-1:exon:4914;Parent=Msa0978900-mRNA-1 |
| chr6_4 | exon | 15061649 | 15061799 | 15061649 | ID=Msa0978900-mRNA-1:exon:4913;Parent=Msa0978900-mRNA-1 |
| chr6_4 | exon | 15061456 | 15061639 | 15061456 | ID=Msa0978900-mRNA-1:exon:4912;Parent=Msa0978900-mRNA-1 |
| chr6_4 | exon | 15061298 | 15061338 | 15061298 | ID=Msa0978900-mRNA-1:exon:4911;Parent=Msa0978900-mRNA-1 |
| chr6_4 | exon | 15061053 | 15061282 | 15061053 | ID=Msa0978900-mRNA-1:exon:4910;Parent=Msa0978900-mRNA-1 |
| chr6_4 | exon | 15060153 | 15060385 | 15060153 | ID=Msa0978900-mRNA-1:exon:4909;Parent=Msa0978900-mRNA-1 |
| chr6_4 | exon | 15059634 | 15059709 | 15059634 | ID=Msa0978900-mRNA-1:exon:4908;Parent=Msa0978900-mRNA-1 |
| chr6_4 | exon | 15059420 | 15059496 | 15059420 | ID=Msa0978900-mRNA-1:exon:4907;Parent=Msa0978900-mRNA-1 |
| chr6_4 | exon | 15059273 | 15059322 | 15059273 | ID=Msa0978900-mRNA-1:exon:4906;Parent=Msa0978900-mRNA-1 |
| chr6_4 | exon | 15059097 | 15059181 | 15059097 | ID=Msa0978900-mRNA-1:exon:4905;Parent=Msa0978900-mRNA-1 |
| chr6_4 | exon | 15058752 | 15058823 | 15058752 | ID=Msa0978900-mRNA-1:exon:4904;Parent=Msa0978900-mRNA-1 |
| chr6_4 | exon | 15058115 | 15058345 | 15058115 | ID=Msa0978900-mRNA-1:exon:4903;Parent=Msa0978900-mRNA-1 |
| chr6_4 | exon | 15057744 | 15057758 | 15057744 | ID=Msa0978900-mRNA-1:exon:4902;Parent=Msa0978900-mRNA-1 |
| chr6_4 | CDS | 15063790 | 15063911 | 15063790 | ID=Msa0978900-mRNA-1:cds;Parent=Msa0978900-mRNA-1 |
| chr6_4 | CDS | 15063439 | 15063590 | 15063439 | ID=Msa0978900-mRNA-1:cds;Parent=Msa0978900-mRNA-1 |
| chr6_4 | CDS | 15063153 | 15063199 | 15063153 | ID=Msa0978900-mRNA-1:cds;Parent=Msa0978900-mRNA-1 |
| chr6_4 | CDS | 15061880 | 15062123 | 15061880 | ID=Msa0978900-mRNA-1:cds;Parent=Msa0978900-mRNA-1 |
| chr6_4 | CDS | 15061649 | 15061799 | 15061649 | ID=Msa0978900-mRNA-1:cds;Parent=Msa0978900-mRNA-1 |
| chr6_4 | CDS | 15061456 | 15061639 | 15061456 | ID=Msa0978900-mRNA-1:cds;Parent=Msa0978900-mRNA-1 |
| chr6_4 | CDS | 15061298 | 15061338 | 15061298 | ID=Msa0978900-mRNA-1:cds;Parent=Msa0978900-mRNA-1 |
| chr6_4 | CDS | 15061053 | 15061282 | 15061053 | ID=Msa0978900-mRNA-1:cds;Parent=Msa0978900-mRNA-1 |
| chr6_4 | CDS | 15060153 | 15060385 | 15060153 | ID=Msa0978900-mRNA-1:cds;Parent=Msa0978900-mRNA-1 |
| chr6_4 | CDS | 15059634 | 15059709 | 15059634 | ID=Msa0978900-mRNA-1:cds;Parent=Msa0978900-mRNA-1 |
| chr6_4 | CDS | 15059420 | 15059496 | 15059420 | ID=Msa0978900-mRNA-1:cds;Parent=Msa0978900-mRNA-1 |
| chr6_4 | CDS | 15059273 | 15059322 | 15059273 | ID=Msa0978900-mRNA-1:cds;Parent=Msa0978900-mRNA-1 |
| chr6_4 | CDS | 15059097 | 15059181 | 15059097 | ID=Msa0978900-mRNA-1:cds;Parent=Msa0978900-mRNA-1 |
| chr6_4 | CDS | 15058752 | 15058823 | 15058752 | ID=Msa0978900-mRNA-1:cds;Parent=Msa0978900-mRNA-1 |
| chr6_4 | CDS | 15058115 | 15058345 | 15058115 | ID=Msa0978900-mRNA-1:cds;Parent=Msa0978900-mRNA-1 |
| chr6_4 | CDS | 15057744 | 15057758 | 15057744 | ID=Msa0978900-mRNA-1:cds;Parent=Msa0978900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
