AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0896410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0896410 MtrunA17_Chr6g0481091 99.163 239 2 0 1 239 1 239 0.0 499
Msa0896410 MtrunA17_Chr3g0109821 75.309 162 39 1 1 161 1 162 1.14e-89 278
Msa0896410 MtrunA17_Chr5g0433781 74.375 160 41 0 1 160 1 160 9.99e-86 267
Msa0896410 MtrunA17_Chr2g0309891 71.519 158 44 1 1 157 1 158 2.94e-83 252
Msa0896410 MtrunA17_Chr5g0400461 63.068 176 55 2 1 169 1 173 5.30e-75 230
Msa0896410 MtrunA17_Chr4g0054791 63.750 160 55 1 1 157 1 160 5.21e-70 217
Msa0896410 MtrunA17_Chr3g0130101 47.805 205 98 2 8 205 9 211 3.61e-61 196
Msa0896410 MtrunA17_Chr1g0201021 59.006 161 66 0 8 168 21 181 5.51e-61 201
Msa0896410 MtrunA17_Chr3g0128151 47.748 222 107 2 1 218 17 233 1.17e-60 200
Msa0896410 MtrunA17_Chr4g0017921 57.051 156 63 2 5 159 7 159 4.52e-60 192
Msa0896410 MtrunA17_Chr5g0417791 50.000 188 87 3 6 189 3 187 8.35e-60 189
Msa0896410 MtrunA17_Chr4g0018391 52.381 168 75 3 6 170 7 172 1.08e-59 191
Msa0896410 MtrunA17_Chr1g0200561 57.237 152 62 2 6 156 19 168 1.57e-59 191
Msa0896410 MtrunA17_Chr3g0128111 46.890 209 103 2 9 217 45 245 6.66e-59 186
Msa0896410 MtrunA17_Chr5g0428991 46.352 233 111 3 6 238 25 243 9.55e-59 196
Msa0896410 MtrunA17_Chr4g0056541 53.289 152 68 2 6 156 7 156 1.59e-58 189
Msa0896410 MtrunA17_Chr8g0372121 48.045 179 90 2 6 183 6 182 1.75e-58 187
Msa0896410 MtrunA17_Chr2g0309331 57.051 156 61 4 4 156 8 160 2.31e-58 188
Msa0896410 MtrunA17_Chr5g0405211 55.263 152 65 2 6 156 8 157 6.32e-58 187
Msa0896410 MtrunA17_Chr4g0042561 45.729 199 98 5 6 200 9 201 9.37e-58 184
Msa0896410 MtrunA17_Chr8g0364791 54.902 153 69 0 6 158 6 158 1.15e-57 189
Msa0896410 MtrunA17_Chr3g0130731 54.487 156 65 3 6 158 7 159 9.62e-57 182
Msa0896410 MtrunA17_Chr5g0398971 54.902 153 66 3 6 156 7 158 1.25e-56 184
Msa0896410 MtrunA17_Chr1g0197351 58.025 162 62 1 4 159 40 201 1.52e-56 187
Msa0896410 MtrunA17_Chr8g0346001 47.126 174 82 2 6 169 15 188 1.76e-56 186
Msa0896410 MtrunA17_Chr2g0318081 51.592 157 74 1 1 157 11 165 1.89e-56 183
Msa0896410 MtrunA17_Chr6g0484441 47.739 199 94 5 6 200 5 197 3.99e-56 182
Msa0896410 MtrunA17_Chr8g0359921 52.830 159 71 2 1 157 9 165 7.84e-56 181
Msa0896410 MtrunA17_Chr1g0197361 57.237 152 63 2 8 158 10 160 1.08e-55 187
Msa0896410 MtrunA17_Chr7g0252971 44.271 192 81 4 4 182 6 184 2.34e-55 180
Msa0896410 MtrunA17_Chr8g0384201 52.941 153 72 0 6 158 6 158 5.39e-55 183
Msa0896410 MtrunA17_Chr2g0316971 56.051 157 63 3 6 158 23 177 1.27e-54 179
Msa0896410 MtrunA17_Chr3g0092671 57.237 152 63 2 8 158 7 157 1.31e-54 183
Msa0896410 MtrunA17_Chr2g0318101 48.889 180 77 3 6 172 15 192 3.16e-54 177
Msa0896410 MtrunA17_Chr3g0124761 46.939 196 90 5 2 194 3 187 3.20e-54 176
Msa0896410 MtrunA17_Chr2g0326361 49.405 168 77 3 6 167 14 179 3.83e-54 176
Msa0896410 MtrunA17_Chr8g0384721 53.503 157 66 4 6 158 7 160 3.85e-54 175
Msa0896410 MtrunA17_Chr6g0453451 52.147 163 74 2 6 166 20 180 2.05e-53 174
Msa0896410 MtrunA17_Chr4g0060931 53.595 153 67 2 6 156 17 167 2.52e-53 176
Msa0896410 MtrunA17_Chr3g0139331 54.194 155 65 3 6 158 11 161 9.41e-53 174
Msa0896410 MtrunA17_Chr1g0147421 54.487 156 64 4 6 158 27 178 9.68e-53 174
Msa0896410 MtrunA17_Chr6g0461661 49.689 161 75 3 3 159 15 173 1.52e-52 174
Msa0896410 MtrunA17_Chr1g0183741 41.395 215 116 4 4 214 8 216 1.80e-52 171
Msa0896410 MtrunA17_Chr3g0091921 53.896 154 67 2 6 157 16 167 4.95e-52 171
Msa0896410 MtrunA17_Chr7g0263931 49.080 163 75 3 2 158 7 167 5.80e-52 171
Msa0896410 MtrunA17_Chr6g0453131 48.235 170 76 3 6 165 15 182 1.72e-51 171
Msa0896410 MtrunA17_Chr4g0076731 52.288 153 68 3 8 159 56 204 1.98e-51 172
Msa0896410 MtrunA17_Chr7g0253011 47.222 180 84 4 4 177 15 189 2.08e-51 171
Msa0896410 MtrunA17_Chr7g0261411 52.941 153 64 3 4 154 8 154 4.41e-51 167
Msa0896410 MtrunA17_Chr4g0047841 47.159 176 66 3 6 156 15 188 8.34e-51 169
Msa0896410 MtrunA17_Chr7g0214071 53.548 155 63 3 4 156 13 160 2.22e-50 165
Msa0896410 MtrunA17_Chr3g0144271 60.294 136 49 4 5 137 22 155 8.14e-50 168
Msa0896410 MtrunA17_Chr2g0312321 47.953 171 84 3 1 170 6 172 1.96e-49 164
Msa0896410 MtrunA17_Chr8g0361731 42.105 190 96 4 8 185 16 203 3.19e-49 166
Msa0896410 MtrunA17_Chr5g0417001 48.428 159 70 3 8 156 16 172 3.85e-49 166
Msa0896410 MtrunA17_Chr7g0217721 56.489 131 55 1 4 134 17 145 8.82e-47 158
Msa0896410 MtrunA17_Chr2g0311651 46.061 165 73 3 8 157 24 187 2.60e-46 156
Msa0896410 MtrunA17_Chr7g0217711 54.962 131 57 1 4 134 17 145 5.34e-45 149
Msa0896410 MtrunA17_Chr4g0038751 44.242 165 82 3 8 169 17 174 2.11e-44 150
Msa0896410 MtrunA17_Chr2g0311661 44.848 165 75 3 8 157 23 186 4.25e-44 150
Msa0896410 MtrunA17_Chr8g0345671 51.656 151 64 5 6 153 11 155 9.52e-44 151
Msa0896410 MtrunA17_Chr5g0442771 45.963 161 73 4 8 156 20 178 2.23e-43 148
Msa0896410 MtrunA17_Chr8g0345691 50.331 151 66 5 6 153 12 156 3.65e-42 148
Msa0896410 MtrunA17_Chr8g0385991 44.785 163 77 4 6 159 14 172 1.48e-38 134
Msa0896410 MtrunA17_Chr2g0321741 49.242 132 58 3 26 157 12 134 7.57e-38 135
Msa0896410 MtrunA17_Chr2g0321631 37.037 216 118 7 7 209 5 215 1.06e-37 132
Msa0896410 MtrunA17_Chr8g0345711 48.571 140 67 4 6 142 12 149 1.58e-37 129
Msa0896410 MtrunA17_Chr4g0026141 41.875 160 86 4 6 158 5 164 4.21e-36 128
Msa0896410 MtrunA17_Chr8g0345731 42.949 156 77 4 6 156 24 172 8.47e-36 125
Msa0896410 MtrunA17_Chr7g0266701 41.718 163 85 6 5 157 3 165 6.09e-35 125
Msa0896410 MtrunA17_Chr3g0131911 42.236 161 79 3 6 156 14 170 1.50e-34 124
Msa0896410 MtrunA17_Chr3g0113001 55.556 99 41 1 61 156 18 116 3.17e-31 116
Msa0896410 MtrunA17_Chr8g0345721 38.122 181 71 7 1 144 26 202 2.47e-29 109
Msa0896410 MtrunA17_Chr4g0050701 36.875 160 83 4 6 157 11 160 2.92e-29 108
Msa0896410 MtrunA17_Chr8g0345741 36.585 164 91 4 17 177 2 155 7.43e-29 106
Msa0896410 MtrunA17_Chr3g0113031 54.444 90 37 1 71 156 3 92 2.74e-27 105
Msa0896410 MtrunA17_Chr8g0345701 40.541 148 68 5 2 132 3 147 1.04e-26 101
Msa0896410 MtrunA17_Chr7g0243371 47.619 84 42 2 56 137 12 95 3.74e-22 88.2
Msa0896410 MtrunA17_Chr8g0384351 38.065 155 74 6 2 156 6 138 4.22e-22 89.7
Msa0896410 MtrunA17_Chr7g0251651 34.437 151 93 4 6 155 18 163 1.75e-21 88.6
Msa0896410 MtrunA17_Chr7g0251661 32.692 156 98 4 2 153 6 158 3.11e-18 79.0
Msa0896410 MtrunA17_Chr3g0130321 34.848 132 76 4 4 133 5 128 3.47e-18 80.1
Msa0896410 MtrunA17_Chr7g0251671 34.884 129 76 4 6 131 10 133 6.63e-17 75.5
Msa0896410 MtrunA17_Chr3g0113011 52.083 48 23 0 4 51 17 64 5.30e-12 59.7
Msa0896410 MtrunA17_Chr7g0274971 33.117 154 89 9 12 157 11 158 6.32e-12 63.2
Msa0896410 MtrunA17_Chr1g0194791 57.778 45 18 1 8 51 48 92 9.84e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0896410 AT3G17730.1 75.934 241 44 5 1 228 1 240 2.25e-130 368
Msa0896410 AT1G65910.1 56.667 240 85 3 1 221 1 240 1.95e-92 284
Msa0896410 AT5G17260.1 59.244 238 69 6 1 217 1 231 5.15e-91 276
Msa0896410 AT3G03200.1 77.707 157 34 1 1 156 1 157 2.05e-88 270
Msa0896410 AT1G54330.1 72.611 157 40 1 1 157 1 154 2.63e-79 241
Msa0896410 AT5G46590.1 64.103 156 54 2 6 159 6 161 7.16e-71 219
Msa0896410 AT4G17980.1 62.733 161 56 2 1 157 1 161 9.67e-70 215
Msa0896410 AT4G17980.2 62.733 161 56 2 1 157 1 161 1.95e-69 215
Msa0896410 AT5G46590.2 67.391 138 40 2 6 142 6 139 2.22e-66 207
Msa0896410 AT3G10480.2 61.635 159 61 0 1 159 22 180 2.40e-66 212
Msa0896410 AT3G10490.1 63.226 155 56 1 6 159 27 181 6.03e-66 204
Msa0896410 AT3G10480.1 61.875 160 60 1 1 159 22 181 1.29e-65 210
Msa0896410 AT1G32510.1 55.080 187 70 3 6 184 6 186 3.09e-65 204
Msa0896410 AT3G10490.2 62.420 157 58 1 4 159 25 181 3.62e-64 206
Msa0896410 AT3G10500.1 58.929 168 67 2 2 168 5 171 9.96e-63 205
Msa0896410 AT5G04410.1 57.485 167 71 0 2 168 5 171 1.07e-62 205
Msa0896410 AT4G35580.3 57.407 162 64 1 6 162 9 170 5.82e-62 202
Msa0896410 AT4G35580.1 57.407 162 64 1 6 162 9 170 5.97e-62 202
Msa0896410 AT4G35580.2 57.407 162 64 1 6 162 9 170 6.07e-62 202
Msa0896410 AT1G33060.1 58.333 156 65 0 1 156 19 174 2.01e-61 204
Msa0896410 AT1G33060.2 58.333 156 65 0 1 156 19 174 2.09e-61 204
Msa0896410 AT1G69490.1 47.644 191 94 3 6 192 9 197 3.28e-61 193
Msa0896410 AT4G10350.1 49.727 183 91 1 5 186 8 190 1.38e-60 194
Msa0896410 AT3G10480.3 52.332 193 58 2 1 159 22 214 1.42e-60 199
Msa0896410 AT5G64060.1 53.571 168 78 0 1 168 1 168 3.84e-59 191
Msa0896410 AT1G12260.2 53.947 152 67 2 6 156 7 156 1.01e-58 189
Msa0896410 AT1G71930.2 48.500 200 94 5 5 200 8 202 1.10e-58 189
Msa0896410 AT1G71930.1 48.500 200 94 5 5 200 8 202 1.10e-58 189
Msa0896410 AT1G62700.1 55.263 152 65 2 6 156 7 156 2.00e-58 190
Msa0896410 AT1G62700.2 55.263 152 65 2 6 156 7 156 2.00e-58 190
Msa0896410 AT1G12260.1 53.947 152 67 2 6 156 7 156 2.36e-58 190
Msa0896410 AT1G33280.1 54.487 156 67 2 5 159 7 159 3.47e-58 187
Msa0896410 AT5G09330.5 57.595 158 67 0 1 158 1 158 3.55e-58 192
Msa0896410 AT5G09330.2 57.595 158 67 0 1 158 1 158 3.55e-58 192
Msa0896410 AT5G09330.4 57.595 158 67 0 1 158 1 158 3.55e-58 192
Msa0896410 AT5G09330.3 57.595 158 67 0 1 158 1 158 3.55e-58 192
Msa0896410 AT5G09330.1 57.595 158 67 0 1 158 1 158 3.55e-58 192
Msa0896410 AT2G24430.2 59.740 154 57 3 5 156 15 165 5.42e-58 186
Msa0896410 AT2G24430.1 59.740 154 57 3 5 156 15 165 5.42e-58 186
Msa0896410 AT2G18060.3 54.430 158 67 3 1 156 4 158 7.69e-58 187
Msa0896410 AT2G18060.1 54.430 158 67 3 1 156 4 158 7.69e-58 187
Msa0896410 AT3G61910.1 43.939 198 97 2 6 189 11 208 1.72e-57 186
Msa0896410 AT4G36160.1 55.556 153 63 3 6 156 10 159 1.98e-57 187
Msa0896410 AT4G36160.3 55.556 153 63 3 6 156 10 159 1.98e-57 187
Msa0896410 AT4G36160.2 55.556 153 63 3 6 156 14 163 2.21e-57 187
Msa0896410 AT5G24590.2 47.895 190 97 2 1 188 8 197 2.55e-57 189
Msa0896410 AT1G34190.1 55.280 161 72 0 8 168 18 178 5.63e-57 190
Msa0896410 AT1G79580.3 56.774 155 62 3 4 156 15 166 6.53e-57 185
Msa0896410 AT1G79580.5 56.774 155 62 3 4 156 15 166 6.53e-57 185
Msa0896410 AT1G79580.4 56.774 155 62 3 4 156 15 166 6.53e-57 185
Msa0896410 AT1G79580.2 56.774 155 62 3 4 156 15 166 6.53e-57 185
Msa0896410 AT1G79580.1 56.774 155 62 3 4 156 15 166 6.53e-57 185
Msa0896410 AT5G66300.1 56.494 154 63 3 5 156 11 162 7.25e-57 183
Msa0896410 AT1G76420.1 52.907 172 76 3 5 174 21 189 7.77e-57 184
Msa0896410 AT2G46770.1 44.843 223 98 7 6 207 16 234 1.06e-56 185
Msa0896410 AT5G39610.1 54.777 157 67 2 4 158 18 172 2.62e-56 181
Msa0896410 AT1G34180.3 54.037 161 74 0 8 168 18 178 2.82e-56 186
Msa0896410 AT1G61110.1 51.515 165 65 3 6 157 16 178 8.38e-56 181
Msa0896410 AT3G18400.1 54.605 152 66 2 5 156 4 152 8.99e-56 181
Msa0896410 AT5G07680.2 56.129 155 64 2 6 158 3 155 1.06e-55 181
Msa0896410 AT1G34180.1 54.037 161 74 0 8 168 18 178 1.26e-55 187
Msa0896410 AT5G07680.1 56.129 155 64 2 6 158 17 169 1.42e-55 181
Msa0896410 AT4G27410.2 49.359 156 77 1 1 156 9 162 5.27e-55 178
Msa0896410 AT3G15500.1 50.641 156 75 1 1 156 9 162 5.29e-55 179
Msa0896410 AT3G15170.1 55.000 160 66 3 6 161 20 177 6.12e-55 179
Msa0896410 AT3G04070.2 49.091 165 70 3 5 157 9 171 1.08e-54 179
Msa0896410 AT1G32770.1 50.617 162 69 2 6 156 16 177 1.50e-54 179
Msa0896410 AT5G61430.1 54.839 155 66 2 6 158 16 168 1.70e-54 178
Msa0896410 AT3G29035.1 54.902 153 65 2 4 154 22 172 4.89e-54 176
Msa0896410 AT1G52890.1 50.000 156 76 1 1 156 9 162 6.23e-54 176
Msa0896410 AT3G04070.1 46.667 180 66 4 5 156 9 186 1.09e-53 177
Msa0896410 AT3G12977.1 47.674 172 87 2 1 171 13 182 1.49e-53 174
Msa0896410 AT1G01720.1 52.866 157 67 3 6 158 7 160 1.67e-53 174
Msa0896410 AT5G62380.2 50.000 156 75 2 2 156 3 156 2.23e-53 176
Msa0896410 AT5G62380.1 50.000 156 75 2 2 156 3 156 2.23e-53 176
Msa0896410 AT3G49530.2 50.955 157 76 1 1 156 8 164 2.95e-53 177
Msa0896410 AT5G08790.1 51.235 162 71 3 2 158 3 161 4.17e-53 173
Msa0896410 AT1G34180.4 50.289 173 74 1 8 168 18 190 4.97e-53 177
Msa0896410 AT3G49530.1 50.955 157 76 1 1 156 8 164 5.77e-53 177
Msa0896410 AT1G34180.2 50.289 173 74 1 8 168 18 190 1.80e-52 178
Msa0896410 AT1G77450.1 39.167 240 132 6 6 237 10 243 2.88e-52 170
Msa0896410 AT5G18270.2 54.140 157 67 3 4 157 19 173 3.57e-52 172
Msa0896410 AT5G53950.1 53.125 160 69 3 6 161 17 174 6.27e-52 172
Msa0896410 AT5G18270.1 53.503 157 68 3 4 157 19 173 8.51e-52 171
Msa0896410 AT2G02450.1 50.980 153 70 3 8 159 53 201 1.53e-51 172
Msa0896410 AT4G27410.3 45.614 171 78 2 1 156 9 179 1.74e-51 170
Msa0896410 AT2G02450.2 50.980 153 70 3 8 159 53 201 2.03e-51 172
Msa0896410 AT5G63790.1 39.914 233 116 6 4 222 48 270 2.46e-51 169
Msa0896410 AT5G63790.2 39.914 233 116 6 4 222 58 280 2.66e-51 169
Msa0896410 AT1G32870.2 54.217 166 72 2 5 168 9 172 8.55e-51 173
Msa0896410 AT1G56010.2 47.458 177 81 5 1 170 14 185 1.08e-50 168
Msa0896410 AT1G32870.1 54.217 166 72 2 5 168 9 172 1.24e-50 173
Msa0896410 AT3G15510.1 47.953 171 74 3 10 167 21 189 1.34e-50 169
Msa0896410 AT1G32870.3 54.217 166 72 2 5 168 45 208 1.97e-50 173
Msa0896410 AT2G33480.1 50.993 151 69 1 6 156 15 160 5.66e-50 164
Msa0896410 AT3G04060.1 52.532 158 70 3 4 158 18 173 6.90e-50 166
Msa0896410 AT5G22290.1 50.685 146 65 2 8 153 23 161 1.47e-49 166
Msa0896410 AT1G26870.1 42.932 191 96 3 6 185 16 204 3.69e-49 166
Msa0896410 AT5G39820.1 41.818 220 96 6 8 203 22 233 4.11e-49 164
Msa0896410 AT2G33480.2 50.331 151 68 2 6 156 15 158 3.15e-48 160
Msa0896410 AT3G44290.2 51.370 146 63 3 8 153 16 153 1.18e-47 157
Msa0896410 AT2G27300.1 49.032 155 71 2 1 155 9 155 1.19e-47 160
Msa0896410 AT5G13180.1 51.634 153 66 3 6 156 14 160 4.68e-47 156
Msa0896410 AT3G44290.1 51.370 146 63 3 8 153 16 153 7.49e-47 158
Msa0896410 AT4G28530.1 50.000 170 59 6 6 156 10 172 1.52e-46 158
Msa0896410 AT2G17040.1 42.564 195 93 6 8 190 8 195 1.76e-46 155
Msa0896410 AT2G43000.1 48.667 150 74 2 8 156 20 167 3.46e-46 155
Msa0896410 AT1G52880.1 50.625 160 65 4 10 157 21 178 6.49e-46 155
Msa0896410 AT5G04395.1 50.000 142 57 2 6 133 28 169 3.84e-42 142
Msa0896410 AT3G12977.2 51.818 110 52 1 63 171 20 129 1.09e-36 129
Msa0896410 AT3G12910.1 43.373 166 74 6 8 156 23 185 2.51e-35 127
Msa0896410 AT5G61430.2 58.163 98 39 1 63 158 8 105 6.35e-35 125
Msa0896410 AT4G10350.2 45.968 124 67 0 63 186 20 143 9.87e-35 126
Msa0896410 AT1G56010.1 51.754 114 46 3 63 170 8 118 2.23e-33 121
Msa0896410 AT4G01550.1 41.146 192 97 8 9 194 7 188 4.99e-32 122
Msa0896410 AT5G22380.1 39.490 157 88 4 9 158 8 164 3.31e-31 115
Msa0896410 AT4G01520.1 43.939 132 69 3 7 133 5 136 8.02e-31 115
Msa0896410 AT3G44350.2 37.975 158 93 4 6 158 5 162 4.92e-30 112
Msa0896410 AT2G33480.3 51.042 96 47 0 61 156 8 103 6.64e-30 111
Msa0896410 AT4G01540.3 43.077 130 69 3 9 133 7 136 9.64e-29 112
Msa0896410 AT4G01540.4 33.690 187 103 6 9 190 7 177 1.32e-28 111
Msa0896410 AT4G01540.2 43.077 130 69 3 9 133 7 136 1.56e-28 112
Msa0896410 AT4G01540.1 43.077 130 69 3 9 133 7 136 1.73e-28 112
Msa0896410 AT4G28530.2 50.909 110 34 3 6 98 10 116 3.87e-28 109
Msa0896410 AT3G10490.4 62.500 80 29 1 81 159 2 81 3.80e-27 107
Msa0896410 AT3G10490.3 62.500 80 29 1 81 159 2 81 3.80e-27 107
Msa0896410 AT3G44350.1 41.985 131 72 3 6 132 5 135 6.03e-27 102
Msa0896410 AT3G04420.2 36.774 155 91 3 7 159 4 153 1.21e-26 104
Msa0896410 AT1G02230.1 40.789 152 78 7 7 153 4 148 1.28e-26 105
Msa0896410 AT3G04420.1 36.774 155 91 3 7 159 4 153 2.80e-26 104
Msa0896410 AT5G64530.1 33.702 181 88 6 4 168 1 165 4.57e-26 100
Msa0896410 AT5G64530.2 39.552 134 65 4 4 135 1 120 1.71e-25 98.2
Msa0896410 AT1G02250.1 36.601 153 83 5 7 153 4 148 1.94e-23 97.4
Msa0896410 AT1G01010.1 38.462 156 77 5 9 153 6 153 3.78e-23 97.4
Msa0896410 AT3G56530.1 31.373 153 100 3 4 154 50 199 2.29e-22 93.6
Msa0896410 AT1G02220.1 35.484 155 90 4 7 159 4 150 9.61e-22 93.2
Msa0896410 AT2G43000.2 46.591 88 46 1 70 156 2 89 1.32e-20 86.7
Msa0896410 AT3G55210.1 31.481 162 93 4 6 154 11 167 1.89e-20 87.8
Msa0896410 AT2G18060.2 51.389 72 31 2 86 156 2 70 7.92e-19 83.6
Msa0896410 AT5G22290.2 50.746 67 27 1 87 153 2 62 1.82e-16 76.3
Msa0896410 AT5G50820.1 33.333 132 74 4 6 133 17 138 2.42e-16 75.1
Msa0896410 AT5G14000.2 31.538 130 83 2 6 133 15 140 3.57e-15 70.9
Msa0896410 AT5G14000.1 29.032 155 101 3 6 158 15 162 5.90e-15 71.6
Msa0896410 AT3G04430.1 33.835 133 74 5 12 132 6 136 5.71e-14 68.6

Find 68 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGTGGGTGGACTTGTTT+AGG 0.187045 6_1:-86505919 Msa0896410:three_prime_UTR
TTCACACTCATTATTGATTA+TGG 0.195935 6_1:+86506419 None:intergenic
TACTTATAAATTGGTGATAA+TGG 0.197648 6_1:-86505957 Msa0896410:three_prime_UTR
GATGATGCTCCTAGTATTTC+TGG 0.199026 6_1:+86506387 None:intergenic
TTATTATTATACTTATAAAT+TGG 0.252215 6_1:-86505966 Msa0896410:three_prime_UTR
CTATTTGTTCTGAATCCATT+AGG 0.256225 6_1:+86510445 None:intergenic
AAATGGAATTTGTTCTGATA+TGG 0.288311 6_1:-86506490 Msa0896410:CDS
TGTTTAGGGGTCATATTATA+AGG 0.288570 6_1:-86505904 Msa0896410:three_prime_UTR
TTGGTGGGTGGACTTGTTTA+GGG 0.291301 6_1:-86505918 Msa0896410:three_prime_UTR
TCATACCAATAGGTCTGTTT+TGG 0.299769 6_1:+86510368 None:intergenic
CTGTTACTAATTAACAGTTT+TGG 0.306587 6_1:+86506002 None:intergenic
TATTTGTTCTGAATCCATTA+GGG 0.344141 6_1:+86510446 None:intergenic
TTTGGTTTGGTTTGGTTTGG+TGG 0.367598 6_1:-86505934 Msa0896410:three_prime_UTR
GAGCAACAAGAGCAGGATAC+TGG 0.370822 6_1:-86510423 Msa0896410:CDS
TGAGGACAACACTGGATTAC+AGG 0.376792 6_1:-86510254 Msa0896410:intron
CTCAAGGAATTAGAACTGAT+TGG 0.379320 6_1:-86510312 Msa0896410:CDS
TGGTTTGGTTTGGTTTGGTT+TGG 0.380253 6_1:-86505937 Msa0896410:three_prime_UTR
GATAATGGTTTGGTTTGGTT+TGG 0.384000 6_1:-86505942 Msa0896410:three_prime_UTR
TCATGCCAAAACAGACCTAT+TGG 0.385273 6_1:-86510373 Msa0896410:CDS
GTTTGGTTTGGTTTGGTGGG+TGG 0.387723 6_1:-86505930 Msa0896410:three_prime_UTR
ATAAATTGGTGATAATGGTT+TGG 0.412402 6_1:-86505952 Msa0896410:three_prime_UTR
TTGGTTTGGTTTGGTTTGGT+GGG 0.413152 6_1:-86505933 Msa0896410:three_prime_UTR
AAGACTTTGGTTTACTATAG+AGG 0.415065 6_1:-86510343 Msa0896410:CDS
CATTTATAAAGATCAACTTC+AGG 0.421834 6_1:+86511243 None:intergenic
GCATAATATATGCAAGGTCT+AGG 0.422001 6_1:+86506069 None:intergenic
AGGAAGACAAAGATGATTCA+TGG 0.428096 6_1:-86506350 Msa0896410:CDS
TCTTTATAAATGTGAACCTT+GGG 0.434445 6_1:-86511232 Msa0896410:CDS
ATCTTTATAAATGTGAACCT+TGG 0.436895 6_1:-86511233 Msa0896410:CDS
CCTCACATTCTTTATCATCA+AGG 0.443410 6_1:+86510272 None:intergenic
ATCAATGAATATTTGAAAGC+TGG 0.444854 6_1:-86506200 Msa0896410:three_prime_UTR
TCAAGGAATTAGAACTGATT+GGG 0.453361 6_1:-86510311 Msa0896410:CDS
TTGACAAGTTCTTCATCAGT+TGG 0.460855 6_1:+86511318 None:intergenic
AAAGTCTTCTTCATACCAAT+AGG 0.464132 6_1:+86510358 None:intergenic
ACAAATAGAGCAACAAGAGC+AGG 0.482385 6_1:-86510430 Msa0896410:CDS
TATTGGTATGAAGAAGACTT+TGG 0.489248 6_1:-86510356 Msa0896410:CDS
AAGAAAATTATGTCACCAGT+TGG 0.490536 6_1:-86511366 Msa0896410:exon
CGAGACAGAAAATACCCTAA+TGG 0.492822 6_1:-86510460 Msa0896410:CDS
AAACCTGGTGGCAATCCAAC+TGG 0.496211 6_1:+86511351 None:intergenic
TACCATTCTGGATCTCTACT+TGG 0.508648 6_1:+86510496 None:intergenic
TTGGTGATAATGGTTTGGTT+TGG 0.514482 6_1:-86505947 Msa0896410:three_prime_UTR
ATTTCTTCACCACCAACCAT+TGG 0.521704 6_1:+86506285 None:intergenic
TCACCAGTTGGATTGCCACC+AGG 0.530748 6_1:-86511354 Msa0896410:CDS
ATCATCTTCATGTTTAGAAG+AGG 0.530767 6_1:-86506370 Msa0896410:CDS
TGCCAAGTAGAGATCCAGAA+TGG 0.535141 6_1:-86510498 Msa0896410:CDS
CATAATATATGCAAGGTCTA+GGG 0.551697 6_1:+86506070 None:intergenic
CCTCGTGAGCATAGCTCAGT+TGG 0.553488 6_1:+86506036 None:intergenic
TCTAATACACCAATGGTTGG+TGG 0.556914 6_1:-86506294 Msa0896410:CDS
TGAGCATAGCTCAGTTGGTA+GGG 0.557113 6_1:+86506041 None:intergenic
TGTGAACCTTGGGAATTAGC+AGG 0.558601 6_1:-86511222 Msa0896410:intron
GTATTCTTCTAATACACCAA+TGG 0.568650 6_1:-86506301 Msa0896410:CDS
GACTTGATGAAAATCAAGAT+TGG 0.571976 6_1:-86506228 Msa0896410:three_prime_UTR
ATGATGTCTCCAGAAATACT+AGG 0.584004 6_1:-86506396 Msa0896410:CDS
TCTTCTAATACACCAATGGT+TGG 0.588359 6_1:-86506297 Msa0896410:CDS
GACAATGCATAATATATGCA+AGG 0.595528 6_1:+86506063 None:intergenic
GTGAGCATAGCTCAGTTGGT+AGG 0.597964 6_1:+86506040 None:intergenic
TATGGACCTGCTAATTCCCA+AGG 0.609085 6_1:+86511216 None:intergenic
CCAACTGAGCTATGCTCACG+AGG 0.617839 6_1:-86506036 Msa0896410:three_prime_UTR
TGGTGGGTGGACTTGTTTAG+GGG 0.619419 6_1:-86505917 Msa0896410:three_prime_UTR
AAAGAATGTGAGGACAACAC+TGG 0.622267 6_1:-86510262 Msa0896410:CDS
GCAGGATACTGGAAATCCAC+CGG 0.627193 6_1:-86510412 Msa0896410:CDS
CAATCAGTTCTAATTCCTTG+AGG 0.630679 6_1:+86510313 None:intergenic
TTGATGAAAATCAAGATTGG+TGG 0.637670 6_1:-86506225 Msa0896410:three_prime_UTR
TATAGAGGAAGAGCTCCTCA+AGG 0.649242 6_1:-86510328 Msa0896410:CDS
CCTTGATGATAAAGAATGTG+AGG 0.663071 6_1:-86510272 Msa0896410:CDS
AATTCATTACAGAAGATGCA+TGG 0.663634 6_1:-86506323 Msa0896410:CDS
GTTGGATGAAATCTGAAACC+TGG 0.673387 6_1:+86511336 None:intergenic
TCTGATATGGAAGAGCAACA+AGG 0.702776 6_1:-86506477 Msa0896410:CDS
GGATGAAATCTGAAACCTGG+TGG 0.739578 6_1:+86511339 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTCATTTATCAAATT+TGG - chr6_1:86506120-86506139 Msa0896410:three_prime_UTR 10.0%
!! ATTGAAAAATGAAAATAAAA+TGG + chr6_1:86506176-86506195 None:intergenic 10.0%
!!! AATGAAATATTTTAACATTA+AGG + chr6_1:86507712-86507731 None:intergenic 10.0%
!! ATTAAAAACCAAAAATAATT+TGG + chr6_1:86508486-86508505 None:intergenic 10.0%
!!! TTTTTTAATTGAATAAAGAT+CGG - chr6_1:86509118-86509137 Msa0896410:intron 10.0%
!!! TTAATTTTTTTTAGTGATAT+TGG - chr6_1:86509454-86509473 Msa0896410:intron 10.0%
!! AATTAATAATGAAATAAACA+TGG - chr6_1:86509801-86509820 Msa0896410:intron 10.0%
!! AAAAAAACAAAAAAAAGTTA+TGG + chr6_1:86511189-86511208 None:intergenic 10.0%
!!! ATAACTTTTTTTTGTTTTTT+TGG - chr6_1:86511188-86511207 Msa0896410:intron 10.0%
!!! ATTTTCATTTTTCAATATCA+TGG - chr6_1:86506180-86506199 Msa0896410:three_prime_UTR 15.0%
!!! TTTTCATTTTTCAATATCAT+GGG - chr6_1:86506181-86506200 Msa0896410:three_prime_UTR 15.0%
!! AAATATCACATTATTAAACA+TGG - chr6_1:86506294-86506313 Msa0896410:CDS 15.0%
!! AAGATAATGTAAAATAAAAG+AGG + chr6_1:86506667-86506686 None:intergenic 15.0%
!!! TATAGTTGATAGAATTTTAT+TGG - chr6_1:86507576-86507595 Msa0896410:intron 15.0%
!!! ATAGTTGATAGAATTTTATT+GGG - chr6_1:86507577-86507596 Msa0896410:intron 15.0%
!!! TTAAACATCCAAATTATTTT+TGG - chr6_1:86508475-86508494 Msa0896410:intron 15.0%
!! ATTCAATTAAAAAAGTGATA+TGG + chr6_1:86509112-86509131 None:intergenic 15.0%
!!! TTAACTGAATTTTTTTAGAA+TGG - chr6_1:86509380-86509399 Msa0896410:intron 15.0%
!! TAATTAATAAAAGCAATGAT+AGG + chr6_1:86509437-86509456 None:intergenic 15.0%
!!! TAATCATTTAAAGCATTATT+TGG + chr6_1:86509732-86509751 None:intergenic 15.0%
!!! AAATTATCTTTAAAAGCTTA+TGG - chr6_1:86510620-86510639 Msa0896410:intron 15.0%
!! TATCTAAAGAGAAAAATCAA+TGG - chr6_1:86506008-86506027 Msa0896410:three_prime_UTR 20.0%
!! TGAAAATTGTCTAATTTCAT+AGG - chr6_1:86506340-86506359 Msa0896410:CDS 20.0%
!!! ATTCTTAGTTGAATAGTTTT+AGG + chr6_1:86506366-86506385 None:intergenic 20.0%
!!! TATATCCTATTTTAGTTCTT+AGG + chr6_1:86506545-86506564 None:intergenic 20.0%
!!! TTTATGTTTGATGCTTTTTA+TGG + chr6_1:86507430-86507449 None:intergenic 20.0%
!!! TAGTTGATAGAATTTTATTG+GGG - chr6_1:86507578-86507597 Msa0896410:intron 20.0%
!! ATGACAATAAGTAAGTATAT+TGG + chr6_1:86507755-86507774 None:intergenic 20.0%
!! ACAATAAACATGTACTTATA+AGG + chr6_1:86507784-86507803 None:intergenic 20.0%
!!! ACAATAACTCTTTTCATATA+GGG + chr6_1:86507816-86507835 None:intergenic 20.0%
!!! TTGAAATTTTGATACAATGA+AGG - chr6_1:86507904-86507923 Msa0896410:intron 20.0%
!! TGACTAATCATTACATATTA+AGG - chr6_1:86507934-86507953 Msa0896410:intron 20.0%
!! GACTAATCATTACATATTAA+GGG - chr6_1:86507935-86507954 Msa0896410:intron 20.0%
!! ACAAAATTCAACAATTTAGA+TGG - chr6_1:86508146-86508165 Msa0896410:intron 20.0%
!! ATATATACATATGAAAATCG+TGG + chr6_1:86508292-86508311 None:intergenic 20.0%
!!! TGTTCAAATACATAATTTTG+AGG + chr6_1:86508357-86508376 None:intergenic 20.0%
!! TAATTATATACAGTGAAACA+AGG + chr6_1:86508436-86508455 None:intergenic 20.0%
!! TTTAACGTTGTTTAAATATG+TGG + chr6_1:86508460-86508479 None:intergenic 20.0%
!! AGAAGAAATAAAACTATACT+AGG + chr6_1:86508900-86508919 None:intergenic 20.0%
!! ATTTCAGTAAACCAAATATA+TGG - chr6_1:86509183-86509202 Msa0896410:intron 20.0%
!! TATTTAGAAGTTGAAAAATG+TGG - chr6_1:86509241-86509260 Msa0896410:intron 20.0%
!! AATTTATTTGGTTAACTAAG+TGG + chr6_1:86509301-86509320 None:intergenic 20.0%
!! TTAGTTAACCAAATAAATTC+TGG - chr6_1:86509302-86509321 Msa0896410:intron 20.0%
!!! ATTTTTTTAGAATGGTACAA+AGG - chr6_1:86509388-86509407 Msa0896410:intron 20.0%
!!! TTTTTTTAGAATGGTACAAA+GGG - chr6_1:86509389-86509408 Msa0896410:intron 20.0%
!! TTTATTCTTGAACACAAAAA+TGG - chr6_1:86509622-86509641 Msa0896410:intron 20.0%
!! ATAATGAAATAAACATGGTA+AGG - chr6_1:86509806-86509825 Msa0896410:intron 20.0%
!! TAATGAAATAAACATGGTAA+GGG - chr6_1:86509807-86509826 Msa0896410:intron 20.0%
!!! CTAATTTTGATAAGCTTTTA+AGG + chr6_1:86509999-86510018 None:intergenic 20.0%
!! GTATGTATTATCTTAGAATT+TGG + chr6_1:86510221-86510240 None:intergenic 20.0%
!! AACATAGAATCATAATGTAT+AGG + chr6_1:86510442-86510461 None:intergenic 20.0%
!!! GTTATATGATAAAGTGTTTA+TGG + chr6_1:86510519-86510538 None:intergenic 20.0%
!! ACAAAAAAAAGTTATGGTAA+AGG + chr6_1:86511183-86511202 None:intergenic 20.0%
!!! ACTTTTTTTTGTTTTTTTGG+TGG - chr6_1:86511191-86511210 Msa0896410:intron 20.0%
!!! TACTTATAAATTGGTGATAA+TGG - chr6_1:86511342-86511361 Msa0896410:CDS 20.0%
! CATTTATAAAGATCAACTTC+AGG + chr6_1:86506059-86506078 None:intergenic 25.0%
! ATCTTTATAAATGTGAACCT+TGG - chr6_1:86506066-86506085 Msa0896410:three_prime_UTR 25.0%
! TCTTTATAAATGTGAACCTT+GGG - chr6_1:86506067-86506086 Msa0896410:three_prime_UTR 25.0%
! AACTATTCAACTAAGAATCA+TGG - chr6_1:86506368-86506387 Msa0896410:CDS 25.0%
! GAGAAAATTACTTCCAAATT+TGG - chr6_1:86506575-86506594 Msa0896410:intron 25.0%
! TGAAAAATTAGGTCCAAATT+TGG + chr6_1:86506591-86506610 None:intergenic 25.0%
! GAGTAGTGATATGAAAAATT+AGG + chr6_1:86506602-86506621 None:intergenic 25.0%
!! GTGTATATGTATTTTCCATT+AGG - chr6_1:86506708-86506727 Msa0896410:intron 25.0%
! AATTGAAAAACTTAGCCTAA+TGG + chr6_1:86506726-86506745 None:intergenic 25.0%
!!! AGGCTAAGTTTTTCAATTTT+CGG - chr6_1:86506728-86506747 Msa0896410:intron 25.0%
!! TTTCAATTTTCGGATTATGA+TGG - chr6_1:86506738-86506757 Msa0896410:intron 25.0%
!! GATGGAAACATTTTCTTTTT+TGG - chr6_1:86506756-86506775 Msa0896410:intron 25.0%
!! TATTTGTTCTGAATCCATTA+GGG + chr6_1:86506856-86506875 None:intergenic 25.0%
!!! ATAGTTTTGCAACCAAAAAA+TGG - chr6_1:86507251-86507270 Msa0896410:intron 25.0%
! TACCAATAATAACTTCAACA+AGG + chr6_1:86507486-86507505 None:intergenic 25.0%
! GACTACTCATTATAATTTCA+GGG + chr6_1:86507620-86507639 None:intergenic 25.0%
! TGACTACTCATTATAATTTC+AGG + chr6_1:86507621-86507640 None:intergenic 25.0%
!!! TTGAAGTTTTGATACATTGA+AGG + chr6_1:86507651-86507670 None:intergenic 25.0%
! ACAATAAGTAAGTATATTGG+AGG + chr6_1:86507752-86507771 None:intergenic 25.0%
!! CACAATAACTCTTTTCATAT+AGG + chr6_1:86507817-86507836 None:intergenic 25.0%
! AAGTTGTGTAGATAATATCA+CGG + chr6_1:86507996-86508015 None:intergenic 25.0%
! GATTAATTTCGTATTGTAGA+TGG - chr6_1:86508189-86508208 Msa0896410:intron 25.0%
! GAAAAAAGAGTTATGAAAGT+AGG + chr6_1:86508594-86508613 None:intergenic 25.0%
!!! GCTTTTTCAGATCAAATATA+TGG + chr6_1:86508642-86508661 None:intergenic 25.0%
!! ACCAAAAGATAAAAGAGTTT+TGG - chr6_1:86508811-86508830 Msa0896410:intron 25.0%
!! ACCAAAACTCTTTTATCTTT+TGG + chr6_1:86508815-86508834 None:intergenic 25.0%
!!! GTTTTTCACGTTCTTTTTTA+TGG + chr6_1:86508846-86508865 None:intergenic 25.0%
! TTAACTAAGTGGAAAAATAG+TGG + chr6_1:86509290-86509309 None:intergenic 25.0%
!!! CTAGTTTTCCAGAATTTATT+TGG + chr6_1:86509313-86509332 None:intergenic 25.0%
!! AATAAATTCTGGAAAACTAG+TGG - chr6_1:86509313-86509332 Msa0896410:intron 25.0%
!!! TTTTTTAGAATGGTACAAAG+GGG - chr6_1:86509390-86509409 Msa0896410:intron 25.0%
! ACAAAATGAAAGTGATAGAT+AGG + chr6_1:86509586-86509605 None:intergenic 25.0%
! GTTTAGTGTATAGTATCTAT+TGG + chr6_1:86509649-86509668 None:intergenic 25.0%
!! CATTTAAAGCATTATTTGGT+TGG + chr6_1:86509728-86509747 None:intergenic 25.0%
!! TTATGCCATATAAAGTATCT+AGG + chr6_1:86509775-86509794 None:intergenic 25.0%
! ACATTGATATAAGTCATGTT+TGG - chr6_1:86509834-86509853 Msa0896410:intron 25.0%
! AATTAGCTACAAACAACTTA+TGG - chr6_1:86510013-86510032 Msa0896410:intron 25.0%
! CCTATTTGGATTAACTTATT+TGG + chr6_1:86510109-86510128 None:intergenic 25.0%
! CCAAATAAGTTAATCCAAAT+AGG - chr6_1:86510106-86510125 Msa0896410:intron 25.0%
! TTAACTCAACATTGTAAAAC+TGG + chr6_1:86510191-86510210 None:intergenic 25.0%
!!! GGAAACTTTAAGATACTTTT+AGG + chr6_1:86510277-86510296 None:intergenic 25.0%
! CTAAATGTATTGTAATCAAG+TGG + chr6_1:86510298-86510317 None:intergenic 25.0%
! CAAATGTGTTAAAACCATAT+AGG + chr6_1:86510361-86510380 None:intergenic 25.0%
!!! CTATATGGTTTTAACACATT+TGG - chr6_1:86510359-86510378 Msa0896410:CDS 25.0%
! TATTATGTAGTCAACAATTG+AGG + chr6_1:86510400-86510419 None:intergenic 25.0%
!! AAATGGAATTTGTTCTGATA+TGG - chr6_1:86510809-86510828 Msa0896410:intron 25.0%
!! TTCACACTCATTATTGATTA+TGG + chr6_1:86510883-86510902 None:intergenic 25.0%
! ATCAATGAATATTTGAAAGC+TGG - chr6_1:86511099-86511118 Msa0896410:intron 25.0%
!!! TTTTTTTGTTTTTTTGGTGG+TGG - chr6_1:86511194-86511213 Msa0896410:intron 25.0%
!!! CTAATTAACAGTTTTGGTAA+AGG + chr6_1:86511294-86511313 None:intergenic 25.0%
!! CTGTTACTAATTAACAGTTT+TGG + chr6_1:86511300-86511319 None:intergenic 25.0%
!!! ATAAATTGGTGATAATGGTT+TGG - chr6_1:86511347-86511366 Msa0896410:CDS 25.0%
AAGAAAATTATGTCACCAGT+TGG - chr6_1:86505933-86505952 Msa0896410:three_prime_UTR 30.0%
ACGATCCTAAGAACTAAAAT+AGG - chr6_1:86506537-86506556 Msa0896410:intron 30.0%
! TTTTCATATCACTACTCTCT+AGG - chr6_1:86506605-86506624 Msa0896410:intron 30.0%
! CTATTTGTTCTGAATCCATT+AGG + chr6_1:86506857-86506876 None:intergenic 30.0%
! TGAAACTTTTCTGTCTTTAC+CGG + chr6_1:86506909-86506928 None:intergenic 30.0%
AAAGTCTTCTTCATACCAAT+AGG + chr6_1:86506944-86506963 None:intergenic 30.0%
TATTGGTATGAAGAAGACTT+TGG - chr6_1:86506943-86506962 Msa0896410:intron 30.0%
! AAGACTTTGGTTTACTATAG+AGG - chr6_1:86506956-86506975 Msa0896410:intron 30.0%
TCAAGGAATTAGAACTGATT+GGG - chr6_1:86506988-86507007 Msa0896410:intron 30.0%
! ATCCTCTACAATCAGTTTTA+CGG + chr6_1:86507161-86507180 None:intergenic 30.0%
! TTGCAAAACTATGAGCATTT+TGG + chr6_1:86507243-86507262 None:intergenic 30.0%
!!! CGATCAATGAAACCATTTTT+TGG + chr6_1:86507266-86507285 None:intergenic 30.0%
TTTGTTAGCGAATTTCCATA+AGG - chr6_1:86507288-86507307 Msa0896410:intron 30.0%
GTCCTTGTTGAAGTTATTAT+TGG - chr6_1:86507481-86507500 Msa0896410:intron 30.0%
ACTAACAAAATGCACAATCA+GGG + chr6_1:86507680-86507699 None:intergenic 30.0%
TCACGGCTAACAATAAAATT+CGG + chr6_1:86507979-86507998 None:intergenic 30.0%
! TAATGTCCTCATTTTATGCT+TGG - chr6_1:86508075-86508094 Msa0896410:intron 30.0%
TCTTATCCAAGCATAAAATG+AGG + chr6_1:86508084-86508103 None:intergenic 30.0%
GATAATGACATTCAAAATCG+TGG + chr6_1:86508270-86508289 None:intergenic 30.0%
TTGTGATTAATTACGTCAGA+TGG - chr6_1:86508390-86508409 Msa0896410:intron 30.0%
AGAGTTATGAAAGTAGGTAA+AGG + chr6_1:86508588-86508607 None:intergenic 30.0%
! TTTTTCTCTCTCTTCTCTTA+TGG - chr6_1:86508919-86508938 Msa0896410:intron 30.0%
TTGTCATACAGAGATATTAG+AGG + chr6_1:86509015-86509034 None:intergenic 30.0%
AAGTGATATGGATCATAAGT+AGG + chr6_1:86509100-86509119 None:intergenic 30.0%
! GTTTACTGAAATTTTCAGAG+TGG + chr6_1:86509175-86509194 None:intergenic 30.0%
GATCACACAGACTATATATT+TGG - chr6_1:86509357-86509376 Msa0896410:intron 30.0%
ATTCTTCTCATAATCCATGA+AGG - chr6_1:86509526-86509545 Msa0896410:intron 30.0%
ATGAAAGTGATAGATAGGAT+AGG + chr6_1:86509581-86509600 None:intergenic 30.0%
! CTATCACTTTCATTTTGTGT+CGG - chr6_1:86509588-86509607 Msa0896410:intron 30.0%
! ATGCTTTAAATGATTAAGCC+AGG - chr6_1:86509736-86509755 Msa0896410:intron 30.0%
! TGCTTTAAATGATTAAGCCA+GGG - chr6_1:86509737-86509756 Msa0896410:intron 30.0%
!!! TATAGACACTTTTGAGATTC+TGG + chr6_1:86510133-86510152 None:intergenic 30.0%
!! ATCTCAAAAGTGTCTATAAG+TGG - chr6_1:86510135-86510154 Msa0896410:intron 30.0%
!!! ATACTTTTAGGTTACTCAGA+GGG + chr6_1:86510265-86510284 None:intergenic 30.0%
TTTGTGGCATAAAGATTCAA+AGG + chr6_1:86510323-86510342 None:intergenic 30.0%
!! ATGTTACTTTAGCACTACTT+AGG - chr6_1:86510457-86510476 Msa0896410:CDS 30.0%
TTCAATGACATAAACACTTG+TGG + chr6_1:86510702-86510721 None:intergenic 30.0%
AATGCAATCAAGCTCATTAA+GGG + chr6_1:86510753-86510772 None:intergenic 30.0%
ATCATCTTCATGTTTAGAAG+AGG - chr6_1:86510929-86510948 Msa0896410:intron 30.0%
AATTCATTACAGAAGATGCA+TGG - chr6_1:86510976-86510995 Msa0896410:intron 30.0%
GTATTCTTCTAATACACCAA+TGG - chr6_1:86510998-86511017 Msa0896410:intron 30.0%
GACTTGATGAAAATCAAGAT+TGG - chr6_1:86511071-86511090 Msa0896410:intron 30.0%
TTGATGAAAATCAAGATTGG+TGG - chr6_1:86511074-86511093 Msa0896410:intron 30.0%
CATAATATATGCAAGGTCTA+GGG + chr6_1:86511232-86511251 None:intergenic 30.0%
GACAATGCATAATATATGCA+AGG + chr6_1:86511239-86511258 None:intergenic 30.0%
TGTTTAGGGGTCATATTATA+AGG - chr6_1:86511395-86511414 Msa0896410:five_prime_UTR 30.0%
TTGACAAGTTCTTCATCAGT+TGG + chr6_1:86505984-86506003 None:intergenic 35.0%
!! CCTCTAAAACCTTTACATTG+CGG - chr6_1:86506483-86506502 Msa0896410:CDS 35.0%
! CTTAGGATCGTTCTAAATTG+CGG + chr6_1:86506528-86506547 None:intergenic 35.0%
!! GATCCAGAATGGTACTTTTT+CGG - chr6_1:86506812-86506831 Msa0896410:intron 35.0%
! TCATACCAATAGGTCTGTTT+TGG + chr6_1:86506934-86506953 None:intergenic 35.0%
! CAATCAGTTCTAATTCCTTG+AGG + chr6_1:86506989-86507008 None:intergenic 35.0%
CTCAAGGAATTAGAACTGAT+TGG - chr6_1:86506987-86507006 Msa0896410:intron 35.0%
CCTCACATTCTTTATCATCA+AGG + chr6_1:86507030-86507049 None:intergenic 35.0%
! CCTTGATGATAAAGAATGTG+AGG - chr6_1:86507027-86507046 Msa0896410:intron 35.0%
ATCCTCTACGGTAAACTTTA+CGG - chr6_1:86507105-86507124 Msa0896410:intron 35.0%
! GATTGTAGAGGATCCATTTT+TGG - chr6_1:86507168-86507187 Msa0896410:intron 35.0%
AGCGAATTTCCATAAGGTTA+AGG - chr6_1:86507294-86507313 Msa0896410:intron 35.0%
TATTGGGGTAATAGTCACTT+TGG - chr6_1:86507593-86507612 Msa0896410:intron 35.0%
GACTAACAAAATGCACAATC+AGG + chr6_1:86507681-86507700 None:intergenic 35.0%
GAGTTATTGTGAACATTGAG+AGG - chr6_1:86507826-86507845 Msa0896410:intron 35.0%
!!! GAGAGGTTATTTTAGTGTCA+AGG - chr6_1:86507843-86507862 Msa0896410:intron 35.0%
ACGGCTAACAATAAAATTCG+GGG + chr6_1:86507977-86507996 None:intergenic 35.0%
CACGGCTAACAATAAAATTC+GGG + chr6_1:86507978-86507997 None:intergenic 35.0%
CTACACAACTTGAAAACTCA+AGG - chr6_1:86508005-86508024 Msa0896410:intron 35.0%
!! TTGCACTCAAAACTAGTCTT+TGG - chr6_1:86508543-86508562 Msa0896410:intron 35.0%
AAAGAACGTGAAAAACTGCA+TGG - chr6_1:86508850-86508869 Msa0896410:intron 35.0%
GATATGGATCATAAGTAGGT+AGG + chr6_1:86509096-86509115 None:intergenic 35.0%
CAACAAGATGTACACGTTAA+AGG + chr6_1:86509150-86509169 None:intergenic 35.0%
GTCATGCAACTGAAAAAATG+TGG + chr6_1:86509218-86509237 None:intergenic 35.0%
! ATAAAGTATCTAGGACCTCA+TGG + chr6_1:86509766-86509785 None:intergenic 35.0%
GAGGTCCTAGATACTTTATA+TGG - chr6_1:86509767-86509786 Msa0896410:intron 35.0%
! TTTGAGATTCTGGACCTATT+TGG + chr6_1:86510123-86510142 None:intergenic 35.0%
!!! GATACTTTTAGGTTACTCAG+AGG + chr6_1:86510266-86510285 None:intergenic 35.0%
TTGTCAGAGATTGTCCTATA+TGG - chr6_1:86510344-86510363 Msa0896410:CDS 35.0%
! AAGCTCATTAAGGGTTTGTT+TGG + chr6_1:86510744-86510763 None:intergenic 35.0%
CAATGCAATCAAGCTCATTA+AGG + chr6_1:86510754-86510773 None:intergenic 35.0%
TGTCGTGTGTTCAAGAAAAA+TGG - chr6_1:86510792-86510811 Msa0896410:intron 35.0%
ATGATGTCTCCAGAAATACT+AGG - chr6_1:86510903-86510922 Msa0896410:intron 35.0%
AGGAAGACAAAGATGATTCA+TGG - chr6_1:86510949-86510968 Msa0896410:intron 35.0%
TCTTCTAATACACCAATGGT+TGG - chr6_1:86511002-86511021 Msa0896410:intron 35.0%
!!! TTGTTTTTTTGGTGGTGGTT+AGG - chr6_1:86511199-86511218 Msa0896410:intron 35.0%
!!! TGTTTTTTTGGTGGTGGTTA+GGG - chr6_1:86511200-86511219 Msa0896410:intron 35.0%
GCATAATATATGCAAGGTCT+AGG + chr6_1:86511233-86511252 None:intergenic 35.0%
!! TTGGTGATAATGGTTTGGTT+TGG - chr6_1:86511352-86511371 Msa0896410:CDS 35.0%
!! GATAATGGTTTGGTTTGGTT+TGG - chr6_1:86511357-86511376 Msa0896410:CDS 35.0%
! GTTGGATGAAATCTGAAACC+TGG + chr6_1:86505966-86505985 None:intergenic 40.0%
AGTTCTTGCATCAAAGACCT+TGG - chr6_1:86506251-86506270 Msa0896410:exon 40.0%
GAATCATGGTTTCAGAACTG+CGG - chr6_1:86506382-86506401 Msa0896410:CDS 40.0%
!! CCGCAATGTAAAGGTTTTAG+AGG + chr6_1:86506486-86506505 None:intergenic 40.0%
TACCATTCTGGATCTCTACT+TGG + chr6_1:86506806-86506825 None:intergenic 40.0%
!! TTAGGGTATTTTCTGTCTCG+CGG + chr6_1:86506839-86506858 None:intergenic 40.0%
CGAGACAGAAAATACCCTAA+TGG - chr6_1:86506839-86506858 Msa0896410:intron 40.0%
ACAAATAGAGCAACAAGAGC+AGG - chr6_1:86506869-86506888 Msa0896410:intron 40.0%
! AACTTTTCTGTCTTTACCGG+TGG + chr6_1:86506906-86506925 None:intergenic 40.0%
TCATGCCAAAACAGACCTAT+TGG - chr6_1:86506926-86506945 Msa0896410:intron 40.0%
AAAGAATGTGAGGACAACAC+TGG - chr6_1:86507037-86507056 Msa0896410:intron 40.0%
TTCGTGACTTAGATCCTCTA+CGG - chr6_1:86507093-86507112 Msa0896410:intron 40.0%
CACCGTAAAACTGATTGTAG+AGG - chr6_1:86507156-86507175 Msa0896410:intron 40.0%
CATTGCATGCCTTAACCTTA+TGG + chr6_1:86507306-86507325 None:intergenic 40.0%
ACGAGTCTAGCACTTAATCA+TGG + chr6_1:86507557-86507576 None:intergenic 40.0%
CTCAAGGTTGCAATAAATGC+AGG - chr6_1:86508021-86508040 Msa0896410:intron 40.0%
TACGTCAGATGGATGATTAG+TGG - chr6_1:86508401-86508420 Msa0896410:intron 40.0%
GAAAGTAGGTAAAGGCCAAA+GGG + chr6_1:86508580-86508599 None:intergenic 40.0%
TGAAAGTAGGTAAAGGCCAA+AGG + chr6_1:86508581-86508600 None:intergenic 40.0%
GGTCACACAGACCATATATT+TGG + chr6_1:86509197-86509216 None:intergenic 40.0%
GACAATCTCTGACAAGTTTG+TGG + chr6_1:86510339-86510358 None:intergenic 40.0%
AATGAGCTTGATTGCATTGC+AGG - chr6_1:86510755-86510774 Msa0896410:intron 40.0%
TCTGATATGGAAGAGCAACA+AGG - chr6_1:86510822-86510841 Msa0896410:intron 40.0%
GATGATGCTCCTAGTATTTC+TGG + chr6_1:86510915-86510934 None:intergenic 40.0%
TCTAATACACCAATGGTTGG+TGG - chr6_1:86511005-86511024 Msa0896410:intron 40.0%
ATTTCTTCACCACCAACCAT+TGG + chr6_1:86511017-86511036 None:intergenic 40.0%
!! TGGTTTGGTTTGGTTTGGTT+TGG - chr6_1:86511362-86511381 Msa0896410:exon 40.0%
!! TTTGGTTTGGTTTGGTTTGG+TGG - chr6_1:86511365-86511384 Msa0896410:exon 40.0%
!! TTGGTTTGGTTTGGTTTGGT+GGG - chr6_1:86511366-86511385 Msa0896410:exon 40.0%
! GGATGAAATCTGAAACCTGG+TGG + chr6_1:86505963-86505982 None:intergenic 45.0%
TGTGAACCTTGGGAATTAGC+AGG - chr6_1:86506077-86506096 Msa0896410:three_prime_UTR 45.0%
TATGGACCTGCTAATTCCCA+AGG + chr6_1:86506086-86506105 None:intergenic 45.0%
CATTGCAGAAAGTTGCACCA+AGG + chr6_1:86506271-86506290 None:intergenic 45.0%
! GTTGCATCCATGGATTATCG+AGG + chr6_1:86506432-86506451 None:intergenic 45.0%
CACAATTGCAGTTGCATCCA+TGG + chr6_1:86506442-86506461 None:intergenic 45.0%
CATGGATGCAACTGCAATTG+TGG - chr6_1:86506440-86506459 Msa0896410:CDS 45.0%
!!! GGTTTTAGAGGTCTCCTCAA+CGG + chr6_1:86506474-86506493 None:intergenic 45.0%
TAAACACGGCCGCAATGTAA+AGG + chr6_1:86506495-86506514 None:intergenic 45.0%
TTTACATTGCGGCCGTGTTT+AGG - chr6_1:86506494-86506513 Msa0896410:CDS 45.0%
TTACATTGCGGCCGTGTTTA+GGG - chr6_1:86506495-86506514 Msa0896410:CDS 45.0%
TGCCAAGTAGAGATCCAGAA+TGG - chr6_1:86506801-86506820 Msa0896410:intron 45.0%
!! GGTCCGAAAAAGTACCATTC+TGG + chr6_1:86506818-86506837 None:intergenic 45.0%
TATAGAGGAAGAGCTCCTCA+AGG - chr6_1:86506971-86506990 Msa0896410:intron 45.0%
TGAGGACAACACTGGATTAC+AGG - chr6_1:86507045-86507064 Msa0896410:intron 45.0%
CACCGTAAAGTTTACCGTAG+AGG + chr6_1:86507110-86507129 None:intergenic 45.0%
!!! GAGGATCCATTTTTGGTGTG+TGG - chr6_1:86507175-86507194 Msa0896410:intron 45.0%
CACACACCACACACCAAAAA+TGG + chr6_1:86507184-86507203 None:intergenic 45.0%
!!! CATTTTTGGTGTGTGGTGTG+TGG - chr6_1:86507182-86507201 Msa0896410:intron 45.0%
!! GGAGAATTGCTGCTTTACGA+GGG + chr6_1:86509560-86509579 None:intergenic 45.0%
!! AGGAGAATTGCTGCTTTACG+AGG + chr6_1:86509561-86509580 None:intergenic 45.0%
! ATTAAGCCAGGGTATCCATG+AGG - chr6_1:86509748-86509767 Msa0896410:intron 45.0%
! TGAGCATAGCTCAGTTGGTA+GGG + chr6_1:86511261-86511280 None:intergenic 45.0%
! TTTGGTGGGTGGACTTGTTT+AGG - chr6_1:86511380-86511399 Msa0896410:five_prime_UTR 45.0%
! TTGGTGGGTGGACTTGTTTA+GGG - chr6_1:86511381-86511400 Msa0896410:five_prime_UTR 45.0%
!! AATAATATAAATAAAGAATA+TGG + chr6_1:86506104-86506123 None:intergenic 5.0%
!!! CTTTATATTTTTTTATTATA+AGG - chr6_1:86508948-86508967 Msa0896410:intron 5.0%
!! AAATAAATAAAATGAAATAA+AGG - chr6_1:86509680-86509699 Msa0896410:intron 5.0%
!! AATAAATAAAATGAAATAAA+GGG - chr6_1:86509681-86509700 Msa0896410:intron 5.0%
!! TTATTATTATACTTATAAAT+TGG - chr6_1:86511333-86511352 Msa0896410:CDS 5.0%
AAACCTGGTGGCAATCCAAC+TGG + chr6_1:86505951-86505970 None:intergenic 50.0%
TGGTTTCAGAACTGCGGCTA+CGG - chr6_1:86506388-86506407 Msa0896410:CDS 50.0%
CTGCGAACCTCGATAATCCA+TGG - chr6_1:86506422-86506441 Msa0896410:CDS 50.0%
TTGTGGTTGCACTTCCGTTG+AGG - chr6_1:86506457-86506476 Msa0896410:CDS 50.0%
GAGCAACAAGAGCAGGATAC+TGG - chr6_1:86506876-86506895 Msa0896410:intron 50.0%
GCAGGATACTGGAAATCCAC+CGG - chr6_1:86506887-86506906 Msa0896410:intron 50.0%
TAAAGGCCAAAGGGTCAGGT+GGG + chr6_1:86508571-86508590 None:intergenic 50.0%
TAGGTAAAGGCCAAAGGGTC+AGG + chr6_1:86508575-86508594 None:intergenic 50.0%
! CGAGGGTGTACAAACCTTCA+TGG + chr6_1:86509543-86509562 None:intergenic 50.0%
GTGAGCATAGCTCAGTTGGT+AGG + chr6_1:86511262-86511281 None:intergenic 50.0%
!! GTTTGGTTTGGTTTGGTGGG+TGG - chr6_1:86511369-86511388 Msa0896410:exon 50.0%
! TGGTGGGTGGACTTGTTTAG+GGG - chr6_1:86511382-86511401 Msa0896410:five_prime_UTR 50.0%
TCACCAGTTGGATTGCCACC+AGG - chr6_1:86505945-86505964 Msa0896410:three_prime_UTR 55.0%
GCGGCCTTCAACCCTAAACA+CGG + chr6_1:86506509-86506528 None:intergenic 55.0%
CGGTGCAGCAGAGATACAAG+AGG - chr6_1:86507125-86507144 Msa0896410:intron 55.0%
GTAAAGGCCAAAGGGTCAGG+TGG + chr6_1:86508572-86508591 None:intergenic 55.0%
CTAGGACCTCATGGATACCC+TGG + chr6_1:86509757-86509776 None:intergenic 55.0%
CCTCGTGAGCATAGCTCAGT+TGG + chr6_1:86511266-86511285 None:intergenic 55.0%
CCAACTGAGCTATGCTCACG+AGG - chr6_1:86511263-86511282 Msa0896410:CDS 55.0%
! GCGGCCGTGTTTAGGGTTGA+AGG - chr6_1:86506502-86506521 Msa0896410:CDS 60.0%
! TTGGTGCCCACCTGACCCTT+TGG - chr6_1:86508562-86508581 Msa0896410:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 86505903 86511418 86505903 ID=Msa0896410;Name=Msa0896410
chr6_1 mRNA 86505903 86511418 86505903 ID=Msa0896410-mRNA-1;Parent=Msa0896410;Name=Msa0896410-mRNA-1;_AED=0.06;_eAED=0.06;_QI=39|1|1|1|1|1|3|357|239
chr6_1 exon 86505903 86506544 86505903 ID=Msa0896410-mRNA-1:exon:14624;Parent=Msa0896410-mRNA-1
chr6_1 exon 86510255 86510532 86510255 ID=Msa0896410-mRNA-1:exon:14623;Parent=Msa0896410-mRNA-1
chr6_1 exon 86511223 86511418 86511223 ID=Msa0896410-mRNA-1:exon:14622;Parent=Msa0896410-mRNA-1
chr6_1 five_prime_UTR 86511380 86511418 86511380 ID=Msa0896410-mRNA-1:five_prime_utr;Parent=Msa0896410-mRNA-1
chr6_1 CDS 86511223 86511379 86511223 ID=Msa0896410-mRNA-1:cds;Parent=Msa0896410-mRNA-1
chr6_1 CDS 86510255 86510532 86510255 ID=Msa0896410-mRNA-1:cds;Parent=Msa0896410-mRNA-1
chr6_1 CDS 86506260 86506544 86506260 ID=Msa0896410-mRNA-1:cds;Parent=Msa0896410-mRNA-1
chr6_1 three_prime_UTR 86505903 86506259 86505903 ID=Msa0896410-mRNA-1:three_prime_utr;Parent=Msa0896410-mRNA-1
Gene Sequence

>Msa0896410

ATGTCACCAGTTGGATTGCCACCAGGTTTCAGATTTCATCCAACTGATGAAGAACTTGTCAATTATTATCTAAAGAGAAAAATCAATGGTCAAGAAATTGAACTTGATATCATTCCTGAAGTTGATCTTTATAAATGTGAACCTTGGGAATTAGCAGAGAAATCATTTTTGCCAAGTAGAGATCCAGAATGGTACTTTTTCGGACCGCGAGACAGAAAATACCCTAATGGATTCAGAACAAATAGAGCAACAAGAGCAGGATACTGGAAATCCACCGGTAAAGACAGAAAAGTTTCATGCCAAAACAGACCTATTGGTATGAAGAAGACTTTGGTTTACTATAGAGGAAGAGCTCCTCAAGGAATTAGAACTGATTGGGTTATGCATGAGTATCGCCTTGATGATAAAGAATGTGAGGACAACACTGGATTACAGGATACGTATGCATTGTGTCGTGTGTTCAAGAAAAATGGAATTTGTTCTGATATGGAAGAGCAACAAGGACAATGTAGCATGTTACAAATTGAATGTTCTCAAACCATAATCAATAATGAGTGTGAAATGATGTCTCCAGAAATACTAGGAGCATCATCTTCATGTTTAGAAGAGGAAGACAAAGATGATTCATGGATGCAATTCATTACAGAAGATGCATGGTATTCTTCTAATACACCAATGGTTGGTGGTGAAGAAATTTCACATGTTACATTTACAAATTAA
Protein sequence

>Msa0896410

MSPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRKVSCQNRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECEDNTGLQDTYALCRVFKKNGICSDMEEQQGQCSMLQIECSQTIINNECEMMSPEILGASSSCLEEEDKDDSWMQFITEDAWYSSNTPMVGGEEISHVTFTN*