AlfalfaGEDB | Msa0896410

M. sativa cultivar zhongmu-4 / Msa0896410

KEGG: -
GO: -
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0896410	XP_013452823.1	99.163	239	2	0	1	239	1	239	1.54e-178	499

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0896410	sp\|Q9FFI5\|NAC86_ARATH	59.244	238	69	6	1	217	1	231	5.07e-90	276

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0896410	A0A072UBN5	99.163	239	2	0	1	239	1	239	7.34e-179	499

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TFs/TRs:

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Gene ID	Type	Classification
Msa0896410	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa0896410	0.805890	1.072809e-49	-8.615850e-47
Msa0022550	Msa0896410	0.804924	1.710440e-49	-8.615850e-47
Msa0024550	Msa0896410	0.807528	4.836227e-50	-8.615850e-47
Msa0081520	Msa0896410	0.813288	2.761653e-51	-8.615850e-47
Msa0102870	Msa0896410	0.812237	4.689833e-51	-8.615850e-47
Msa0112750	Msa0896410	0.800132	1.663643e-48	-8.615850e-47
Msa0120400	Msa0896410	0.810790	9.674403e-51	-8.615850e-47
Msa0129940	Msa0896410	0.805909	1.062890e-49	-8.615850e-47
Msa0157290	Msa0896410	0.806644	7.441213e-50	-8.615850e-47
Msa0169860	Msa0896410	0.808342	3.245885e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0896410	MtrunA17_Chr6g0481091	99.163	239	2	0	1	239	1	239	0.0	499
Msa0896410	MtrunA17_Chr3g0109821	75.309	162	39	1	1	161	1	162	1.14e-89	278
Msa0896410	MtrunA17_Chr5g0433781	74.375	160	41	0	1	160	1	160	9.99e-86	267
Msa0896410	MtrunA17_Chr2g0309891	71.519	158	44	1	1	157	1	158	2.94e-83	252
Msa0896410	MtrunA17_Chr5g0400461	63.068	176	55	2	1	169	1	173	5.30e-75	230
Msa0896410	MtrunA17_Chr4g0054791	63.750	160	55	1	1	157	1	160	5.21e-70	217
Msa0896410	MtrunA17_Chr3g0130101	47.805	205	98	2	8	205	9	211	3.61e-61	196
Msa0896410	MtrunA17_Chr1g0201021	59.006	161	66	0	8	168	21	181	5.51e-61	201
Msa0896410	MtrunA17_Chr3g0128151	47.748	222	107	2	1	218	17	233	1.17e-60	200
Msa0896410	MtrunA17_Chr4g0017921	57.051	156	63	2	5	159	7	159	4.52e-60	192

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0896410	AT3G17730.1	75.934	241	44	5	1	228	1	240	2.25e-130	368
Msa0896410	AT1G65910.1	56.667	240	85	3	1	221	1	240	1.95e-92	284
Msa0896410	AT5G17260.1	59.244	238	69	6	1	217	1	231	5.15e-91	276
Msa0896410	AT3G03200.1	77.707	157	34	1	1	156	1	157	2.05e-88	270
Msa0896410	AT1G54330.1	72.611	157	40	1	1	157	1	154	2.63e-79	241
Msa0896410	AT5G46590.1	64.103	156	54	2	6	159	6	161	7.16e-71	219
Msa0896410	AT4G17980.1	62.733	161	56	2	1	157	1	161	9.67e-70	215
Msa0896410	AT4G17980.2	62.733	161	56	2	1	157	1	161	1.95e-69	215
Msa0896410	AT5G46590.2	67.391	138	40	2	6	142	6	139	2.22e-66	207
Msa0896410	AT3G10480.2	61.635	159	61	0	1	159	22	180	2.40e-66	212

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Find 68 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTGGTGGCAATCCAAC+TGG	0.496211	6_1:+86511351	None:intergenic
AAAGAATGTGAGGACAACAC+TGG	0.622267	6_1:-86510262	Msa0896410:CDS
AAAGTCTTCTTCATACCAAT+AGG	0.464132	6_1:+86510358	None:intergenic
AAATGGAATTTGTTCTGATA+TGG	0.288311	6_1:-86506490	Msa0896410:CDS
AAGAAAATTATGTCACCAGT+TGG	0.490536	6_1:-86511366	Msa0896410:exon
AAGACTTTGGTTTACTATAG+AGG	0.415065	6_1:-86510343	Msa0896410:CDS
AATTCATTACAGAAGATGCA+TGG	0.663634	6_1:-86506323	Msa0896410:CDS
ACAAATAGAGCAACAAGAGC+AGG	0.482385	6_1:-86510430	Msa0896410:CDS
AGGAAGACAAAGATGATTCA+TGG	0.428096	6_1:-86506350	Msa0896410:CDS
ATAAATTGGTGATAATGGTT+TGG	0.412402	6_1:-86505952	Msa0896410:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAAATTATGTCACCAGT+TGG	-	chr6_1:86505933-86505952	Msa0896410:three_prime_UTR	30.0%
ACGATCCTAAGAACTAAAAT+AGG	-	chr6_1:86506537-86506556	Msa0896410:intron	30.0%
AAAGTCTTCTTCATACCAAT+AGG	+	chr6_1:86506944-86506963	None:intergenic	30.0%
TATTGGTATGAAGAAGACTT+TGG	-	chr6_1:86506943-86506962	Msa0896410:intron	30.0%
TCAAGGAATTAGAACTGATT+GGG	-	chr6_1:86506988-86507007	Msa0896410:intron	30.0%
TTTGTTAGCGAATTTCCATA+AGG	-	chr6_1:86507288-86507307	Msa0896410:intron	30.0%
GTCCTTGTTGAAGTTATTAT+TGG	-	chr6_1:86507481-86507500	Msa0896410:intron	30.0%
ACTAACAAAATGCACAATCA+GGG	+	chr6_1:86507680-86507699	None:intergenic	30.0%
TCACGGCTAACAATAAAATT+CGG	+	chr6_1:86507979-86507998	None:intergenic	30.0%
TCTTATCCAAGCATAAAATG+AGG	+	chr6_1:86508084-86508103	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	86505903	86511418	86505903	ID=Msa0896410;Name=Msa0896410
chr6_1	mRNA	86505903	86511418	86505903	ID=Msa0896410-mRNA-1;Parent=Msa0896410;Name=Msa0896410-mRNA-1;_AED=0.06;_eAED=0.06;_QI=39\|1\|1\|1\|1\|1\|3\|357\|239
chr6_1	exon	86505903	86506544	86505903	ID=Msa0896410-mRNA-1:exon:14624;Parent=Msa0896410-mRNA-1
chr6_1	exon	86510255	86510532	86510255	ID=Msa0896410-mRNA-1:exon:14623;Parent=Msa0896410-mRNA-1
chr6_1	exon	86511223	86511418	86511223	ID=Msa0896410-mRNA-1:exon:14622;Parent=Msa0896410-mRNA-1
chr6_1	five_prime_UTR	86511380	86511418	86511380	ID=Msa0896410-mRNA-1:five_prime_utr;Parent=Msa0896410-mRNA-1
chr6_1	CDS	86511223	86511379	86511223	ID=Msa0896410-mRNA-1:cds;Parent=Msa0896410-mRNA-1
chr6_1	CDS	86510255	86510532	86510255	ID=Msa0896410-mRNA-1:cds;Parent=Msa0896410-mRNA-1
chr6_1	CDS	86506260	86506544	86506260	ID=Msa0896410-mRNA-1:cds;Parent=Msa0896410-mRNA-1
chr6_1	three_prime_UTR	86505903	86506259	86505903	ID=Msa0896410-mRNA-1:three_prime_utr;Parent=Msa0896410-mRNA-1

Gene Sequence

>Msa0896410

ATGTCACCAGTTGGATTGCCACCAGGTTTCAGATTTCATCCAACTGATGAAGAACTTGTCAATTATTATCTAAAGAGAAAAATCAATGGTCAAGAAATTGAACTTGATATCATTCCTGAAGTTGATCTTTATAAATGTGAACCTTGGGAATTAGCAGAGAAATCATTTTTGCCAAGTAGAGATCCAGAATGGTACTTTTTCGGACCGCGAGACAGAAAATACCCTAATGGATTCAGAACAAATAGAGCAACAAGAGCAGGATACTGGAAATCCACCGGTAAAGACAGAAAAGTTTCATGCCAAAACAGACCTATTGGTATGAAGAAGACTTTGGTTTACTATAGAGGAAGAGCTCCTCAAGGAATTAGAACTGATTGGGTTATGCATGAGTATCGCCTTGATGATAAAGAATGTGAGGACAACACTGGATTACAGGATACGTATGCATTGTGTCGTGTGTTCAAGAAAAATGGAATTTGTTCTGATATGGAAGAGCAACAAGGACAATGTAGCATGTTACAAATTGAATGTTCTCAAACCATAATCAATAATGAGTGTGAAATGATGTCTCCAGAAATACTAGGAGCATCATCTTCATGTTTAGAAGAGGAAGACAAAGATGATTCATGGATGCAATTCATTACAGAAGATGCATGGTATTCTTCTAATACACCAATGGTTGGTGGTGAAGAAATTTCACATGTTACATTTACAAATTAA

Protein sequence

>Msa0896410

MSPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRKVSCQNRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECEDNTGLQDTYALCRVFKKNGICSDMEEQQGQCSMLQIECSQTIINNECEMMSPEILGASSSCLEEEDKDDSWMQFITEDAWYSSNTPMVGGEEISHVTFTN*