Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170030 | AES61060.1 | 90.027 | 732 | 20 | 3 | 1 | 679 | 14 | 745 | 0.0 | 1318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170030 | sp|Q66GN3|NPGR2_ARATH | 46.721 | 732 | 316 | 10 | 14 | 679 | 16 | 739 | 0.0 | 605 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170030 | G7I4S4 | 90.027 | 732 | 20 | 3 | 1 | 679 | 14 | 745 | 0.0 | 1318 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0170030 | 0.809054 | 2.287323e-50 | -8.615850e-47 |
| Msa0007990 | Msa0170030 | 0.817065 | 3.999781e-52 | -8.615850e-47 |
| Msa0077400 | Msa0170030 | 0.834571 | 2.774741e-56 | -8.615850e-47 |
| Msa0103770 | Msa0170030 | 0.812518 | 4.072892e-51 | -8.615850e-47 |
| Msa0149300 | Msa0170030 | 0.818636 | 1.767486e-52 | -8.615850e-47 |
| Msa0170030 | Msa0187030 | 0.801407 | 9.137503e-49 | -8.615850e-47 |
| Msa0170030 | Msa0204840 | 0.840115 | 1.055976e-57 | -8.615850e-47 |
| Msa0170030 | Msa0211150 | 0.810616 | 1.054755e-50 | -8.615850e-47 |
| Msa0170030 | Msa0218810 | 0.800416 | 1.456059e-48 | -8.615850e-47 |
| Msa0170030 | Msa0219590 | 0.803407 | 3.537177e-49 | -8.615850e-47 |
| Msa0170030 | Msa0225100 | 0.817111 | 3.906249e-52 | -8.615850e-47 |
| Msa0170030 | Msa0225860 | 0.804542 | 2.055377e-49 | -8.615850e-47 |
| Msa0170030 | Msa0244640 | 0.815528 | 8.829069e-52 | -8.615850e-47 |
| Msa0170030 | Msa0265850 | 0.802441 | 5.602590e-49 | -8.615850e-47 |
| Msa0170030 | Msa0287740 | 0.809427 | 1.902165e-50 | -8.615850e-47 |
| Msa0170030 | Msa0344590 | 0.803607 | 3.215568e-49 | -8.615850e-47 |
| Msa0170030 | Msa0363790 | 0.823071 | 1.687593e-53 | -8.615850e-47 |
| Msa0170030 | Msa0367870 | 0.836044 | 1.178173e-56 | -8.615850e-47 |
| Msa0170030 | Msa0405130 | 0.810664 | 1.030142e-50 | -8.615850e-47 |
| Msa0170030 | Msa0440440 | 0.803421 | 3.513644e-49 | -8.615850e-47 |
| Msa0170030 | Msa0455760 | 0.824106 | 9.660506e-54 | -8.615850e-47 |
| Msa0170030 | Msa0463270 | 0.810000 | 1.432973e-50 | -8.615850e-47 |
| Msa0170030 | Msa0467490 | 0.803231 | 3.847833e-49 | -8.615850e-47 |
| Msa0170030 | Msa0508880 | 0.805016 | 1.635888e-49 | -8.615850e-47 |
| Msa0170030 | Msa0528950 | 0.812324 | 4.489096e-51 | -8.615850e-47 |
| Msa0170030 | Msa0632370 | 0.810905 | 9.134336e-51 | -8.615850e-47 |
| Msa0170030 | Msa0633700 | 0.833741 | 4.479724e-56 | -8.615850e-47 |
| Msa0170030 | Msa0715420 | 0.802511 | 5.418430e-49 | -8.615850e-47 |
| Msa0170030 | Msa0738340 | 0.802139 | 6.463197e-49 | -8.615850e-47 |
| Msa0170030 | Msa0751260 | 0.804779 | 1.833938e-49 | -8.615850e-47 |
| Msa0170030 | Msa0795070 | 0.801977 | 6.981033e-49 | -8.615850e-47 |
| Msa0170030 | Msa0832340 | 0.802024 | 6.826541e-49 | -8.615850e-47 |
| Msa0170030 | Msa0836850 | 0.811816 | 5.793828e-51 | -8.615850e-47 |
| Msa0170030 | Msa0899970 | 0.827599 | 1.431487e-54 | -8.615850e-47 |
| Msa0170030 | Msa0926890 | 0.818758 | 1.658367e-52 | -8.615850e-47 |
| Msa0170030 | Msa0927310 | 0.803073 | 4.148587e-49 | -8.615850e-47 |
| Msa0170030 | Msa0961360 | 0.801772 | 7.691746e-49 | -8.615850e-47 |
| Msa0170030 | Msa0965080 | 0.826946 | 2.051921e-54 | -8.615850e-47 |
| Msa0170030 | Msa0965290 | 0.835941 | 1.251706e-56 | -8.615850e-47 |
| Msa0170030 | Msa0967380 | 0.809293 | 2.033157e-50 | -8.615850e-47 |
| Msa0170030 | Msa0967870 | 0.817689 | 2.894715e-52 | -8.615850e-47 |
| Msa0170030 | Msa0999290 | 0.803177 | 3.947529e-49 | -8.615850e-47 |
| Msa0170030 | Msa0999680 | 0.832986 | 6.909321e-56 | -8.615850e-47 |
| Msa0170030 | Msa1002330 | 0.805107 | 1.566015e-49 | -8.615850e-47 |
| Msa0170030 | Msa1004800 | 0.809549 | 1.790846e-50 | -8.615850e-47 |
| Msa0170030 | Msa1019000 | 0.825492 | 4.550799e-54 | -8.615850e-47 |
| Msa0170030 | Msa1019150 | 0.819056 | 1.418726e-52 | -8.615850e-47 |
| Msa0170030 | Msa1041670 | 0.805512 | 1.287779e-49 | -8.615850e-47 |
| Msa0170030 | Msa1047080 | 0.806646 | 7.436487e-50 | -8.615850e-47 |
| Msa0170030 | Msa1075650 | 0.806464 | 8.123582e-50 | -8.615850e-47 |
| Msa0170030 | Msa1081330 | 0.806017 | 1.008742e-49 | -8.615850e-47 |
| Msa0170030 | Msa1121490 | 0.801372 | 9.288486e-49 | -8.615850e-47 |
| Msa0170030 | Msa1131050 | 0.811995 | 5.296010e-51 | -8.615850e-47 |
| Msa0170030 | Msa1147740 | 0.826323 | 2.889699e-54 | -8.615850e-47 |
| Msa0170030 | Msa1155170 | -0.814087 | 1.841409e-51 | -8.615850e-47 |
| Msa0170030 | Msa1166560 | 0.804248 | 2.366117e-49 | -8.615850e-47 |
| Msa0170030 | Msa1193170 | 0.810997 | 8.727816e-51 | -8.615850e-47 |
| Msa0170030 | Msa1199570 | 0.831003 | 2.134856e-55 | -8.615850e-47 |
| Msa0170030 | Msa1225860 | -0.803516 | 3.359303e-49 | -8.615850e-47 |
| Msa0170030 | Msa1228200 | 0.810599 | 1.063923e-50 | -8.615850e-47 |
| Msa0170030 | Msa1238820 | 0.804100 | 2.540783e-49 | -8.615850e-47 |
| Msa0170030 | Msa1297290 | 0.808424 | 3.118878e-50 | -8.615850e-47 |
| Msa0170030 | Msa1308870 | 0.821276 | 4.400446e-53 | -8.615850e-47 |
| Msa0170030 | Msa1328640 | 0.809724 | 1.642921e-50 | -8.615850e-47 |
| Msa0170030 | Msa1328710 | 0.815059 | 1.122253e-51 | -8.615850e-47 |
| Msa0170030 | Msa1345810 | 0.809307 | 2.018354e-50 | -8.615850e-47 |
| Msa0170030 | Msa1385000 | 0.807336 | 5.312023e-50 | -8.615850e-47 |
| Msa0170030 | Msa1394380 | 0.812596 | 3.916119e-51 | -8.615850e-47 |
| Msa0170030 | Msa1402400 | 0.804445 | 2.152613e-49 | -8.615850e-47 |
| Msa0170030 | Msa1425090 | 0.807095 | 5.976562e-50 | -8.615850e-47 |
| Msa0170030 | Msa1459100 | 0.804099 | 2.541011e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170030 | MtrunA17_Chr1g0187271 | 90.027 | 732 | 20 | 3 | 1 | 679 | 1 | 732 | 0.0 | 1317 |
| Msa0170030 | MtrunA17_Chr1g0183461 | 54.261 | 704 | 258 | 8 | 35 | 679 | 15 | 713 | 0.0 | 708 |
| Msa0170030 | MtrunA17_Chr7g0261581 | 52.000 | 725 | 281 | 8 | 16 | 679 | 10 | 728 | 0.0 | 682 |
| Msa0170030 | MtrunA17_Chr1g0152501 | 38.643 | 722 | 368 | 11 | 24 | 678 | 3 | 716 | 6.25e-145 | 439 |
| Msa0170030 | MtrunA17_Chr5g0409291 | 41.695 | 590 | 281 | 8 | 41 | 574 | 8 | 590 | 5.32e-139 | 420 |
| Msa0170030 | MtrunA17_Chr8g0369551 | 39.527 | 592 | 291 | 9 | 41 | 574 | 3 | 585 | 2.72e-131 | 400 |
| Msa0170030 | MtrunA17_Chr5g0409281 | 45.283 | 106 | 52 | 2 | 575 | 678 | 9 | 110 | 3.14e-23 | 95.1 |
| Msa0170030 | MtrunA17_Chr8g0369541 | 40.517 | 116 | 62 | 3 | 565 | 678 | 11 | 121 | 1.13e-20 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170030 | AT4G28600.3 | 46.404 | 737 | 316 | 10 | 14 | 679 | 16 | 744 | 0.0 | 606 |
| Msa0170030 | AT4G28600.1 | 46.721 | 732 | 316 | 10 | 14 | 679 | 16 | 739 | 0.0 | 605 |
| Msa0170030 | AT4G28600.2 | 46.721 | 732 | 316 | 10 | 14 | 679 | 16 | 739 | 0.0 | 605 |
| Msa0170030 | AT2G43040.2 | 40.438 | 685 | 343 | 10 | 52 | 678 | 23 | 700 | 2.97e-158 | 473 |
| Msa0170030 | AT2G43040.1 | 40.438 | 685 | 343 | 10 | 52 | 678 | 23 | 700 | 2.97e-158 | 473 |
| Msa0170030 | AT1G27460.1 | 37.131 | 711 | 371 | 13 | 24 | 678 | 3 | 693 | 1.43e-131 | 404 |
| Msa0170030 | AT1G27460.3 | 37.199 | 707 | 372 | 14 | 24 | 678 | 3 | 689 | 3.88e-130 | 400 |
| Msa0170030 | AT1G27460.2 | 36.643 | 554 | 290 | 9 | 24 | 533 | 3 | 539 | 2.59e-101 | 321 |
Find 96 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTTCTCTCCATTGTTTC+TGG | 0.103677 | 1_4:+53599757 | None:intergenic |
| CTTTCTATATTGCTATAAAA+AGG | 0.124287 | 1_4:-53601687 | Msa0170030:five_prime_UTR |
| TCAATGGTGGTTGCTGTAAA+AGG | 0.205792 | 1_4:+53601621 | None:intergenic |
| AAGATGTTATCTTATCATTT+AGG | 0.224670 | 1_4:-53600065 | Msa0170030:CDS |
| TTAGCATTAGAAGGGAATTA+AGG | 0.229003 | 1_4:-53601125 | Msa0170030:CDS |
| GCTTCTTCTATGTTGTTTCT+TGG | 0.237898 | 1_4:+53599904 | None:intergenic |
| ACTTCTCTACAAAGCTGATT+TGG | 0.244443 | 1_4:-53597783 | Msa0170030:CDS |
| CTTTAGATCAAAGTGGAAAA+TGG | 0.252150 | 1_4:-53599180 | Msa0170030:CDS |
| TCTTTGTGAGTGAATTTAAT+AGG | 0.283325 | 1_4:-53601843 | Msa0170030:five_prime_UTR |
| AAATCTAGGAACTGCAAATA+AGG | 0.308744 | 1_4:-53599044 | Msa0170030:CDS |
| TTGTGGACTGCGTTTATTAT+CGG | 0.339976 | 1_4:+53600584 | None:intergenic |
| GATACCGACACATAATAAAA+AGG | 0.340458 | 1_4:+53597672 | None:intergenic |
| ATCAATAACACTAAAGTATA+GGG | 0.348277 | 1_4:+53601782 | None:intergenic |
| ATCAAACTTGCCACATGGTT+TGG | 0.348661 | 1_4:+53597926 | None:intergenic |
| AAAAGGTGTTATTGTCTAAA+GGG | 0.350616 | 1_4:+53597689 | None:intergenic |
| CTTCTCTACAAAGCTGATTT+GGG | 0.359543 | 1_4:-53597782 | Msa0170030:CDS |
| GGAAAGCTTTGCTTTATCAT+TGG | 0.361228 | 1_4:-53600044 | Msa0170030:CDS |
| TGCAATCTAGAAGCGGAATA+AGG | 0.365185 | 1_4:+53598645 | None:intergenic |
| AATCAATAACACTAAAGTAT+AGG | 0.369845 | 1_4:+53601781 | None:intergenic |
| GCTATTGCAAATTGTTTACT+AGG | 0.372778 | 1_4:-53599502 | Msa0170030:CDS |
| TAGGAAGCTAGAGCCTTGTT+AGG | 0.391721 | 1_4:-53600720 | Msa0170030:CDS |
| GGAAGACTTGAGTATCAAAA+AGG | 0.405055 | 1_4:-53600699 | Msa0170030:CDS |
| AGGCGAGCATATAGTTGCTT+TGG | 0.422943 | 1_4:-53599698 | Msa0170030:CDS |
| TAGAACTGCTTCCGGAGTTA+TGG | 0.430356 | 1_4:-53600107 | Msa0170030:CDS |
| GAATTCAGTATCTATAATAT+AGG | 0.437219 | 1_4:-53601600 | Msa0170030:intron |
| TTTAGATCAAAGTGGAAAAT+GGG | 0.439198 | 1_4:-53599179 | Msa0170030:CDS |
| GCTGCACTTCATGTATTTGA+AGG | 0.441433 | 1_4:-53600666 | Msa0170030:CDS |
| TCATCTGCATGGTACAATCT+TGG | 0.445464 | 1_4:-53597806 | Msa0170030:CDS |
| CATCAGAGTCCCTTGCAACT+AGG | 0.452176 | 1_4:-53601044 | Msa0170030:CDS |
| CGCAAAGAAACTGATTAAGC+TGG | 0.463190 | 1_4:-53599296 | Msa0170030:CDS |
| GCATGGAAAATGTAATCAAA+TGG | 0.470470 | 1_4:-53599527 | Msa0170030:CDS |
| AAATGCTGTAGAACTGCTTC+CGG | 0.471565 | 1_4:-53600115 | Msa0170030:CDS |
| ATCAGAGTCCCTTGCAACTA+GGG | 0.473346 | 1_4:-53601043 | Msa0170030:CDS |
| TGATAAAGTGTGTGTGTTCA+AGG | 0.476700 | 1_4:-53601098 | Msa0170030:CDS |
| TATTGTCTAAAGGGTTCAAT+GGG | 0.486431 | 1_4:+53597698 | None:intergenic |
| TTATTGTCTAAAGGGTTCAA+TGG | 0.487445 | 1_4:+53597697 | None:intergenic |
| ATCAACTGCAAGAATACAAA+AGG | 0.489122 | 1_4:-53600007 | Msa0170030:CDS |
| GGTTTACTTTATGAAGCAAA+AGG | 0.492557 | 1_4:-53597998 | Msa0170030:CDS |
| ATTATAGATACTGAATTCAA+TGG | 0.493458 | 1_4:+53601605 | None:intergenic |
| CAATGGTGGTTGCTGTAAAA+GGG | 0.493766 | 1_4:+53601622 | None:intergenic |
| AACTGCAAATAAGGTTATGA+AGG | 0.507160 | 1_4:-53599035 | Msa0170030:CDS |
| AGATTTAGCAAGACAAACTT+CGG | 0.507247 | 1_4:+53598680 | None:intergenic |
| CAAAGTGGAAAATGGGATCA+AGG | 0.507761 | 1_4:-53599172 | Msa0170030:CDS |
| GCTCTTTGTTACTGCGGTGA+AGG | 0.509858 | 1_4:-53599718 | Msa0170030:CDS |
| CAAAGATTAAGAACAATGTA+AGG | 0.511122 | 1_4:+53599364 | None:intergenic |
| ATGTGTCGGTATCGTGTCAC+TGG | 0.518446 | 1_4:-53597662 | Msa0170030:three_prime_UTR |
| AAGTGGTTATTTAAACTATG+AGG | 0.522868 | 1_4:-53600920 | Msa0170030:intron |
| GAATCCTCTCTACGTGAAAG+TGG | 0.526854 | 1_4:-53600937 | Msa0170030:CDS |
| GCTTGTGTTCTGAGAAAACT+TGG | 0.530375 | 1_4:-53597896 | Msa0170030:CDS |
| GCTTTAATGCATCAGTGAGA+AGG | 0.537010 | 1_4:+53597843 | None:intergenic |
| CTCGGTATACTCAGATTGCA+TGG | 0.538524 | 1_4:-53599641 | Msa0170030:CDS |
| ATTACAACTCATAGAAGAAG+TGG | 0.541602 | 1_4:+53601736 | None:intergenic |
| GCTTCTAGATTGCACTCCAC+AGG | 0.542659 | 1_4:-53598636 | Msa0170030:intron |
| AATCTGCATTACCAGAAGGT+TGG | 0.547530 | 1_4:-53600182 | Msa0170030:CDS |
| GCTGTAAAAGGGAAAGAGAA+TGG | 0.549664 | 1_4:+53601633 | None:intergenic |
| ATAACCACTTTCACGTAGAG+AGG | 0.556218 | 1_4:+53600933 | None:intergenic |
| AGCTTCTGAGAAATTGATGA+AGG | 0.560809 | 1_4:-53599395 | Msa0170030:CDS |
| ATACTCAAGTCTTCCTAACA+AGG | 0.561665 | 1_4:+53600707 | None:intergenic |
| GGAATTACTTCCAGAAACAA+TGG | 0.562728 | 1_4:-53599767 | Msa0170030:CDS |
| CTGAATAGTCCCTAGTTGCA+AGG | 0.563955 | 1_4:+53601034 | None:intergenic |
| TGGCAGACACTGACACGTGT+TGG | 0.567207 | 1_4:-53597642 | Msa0170030:three_prime_UTR |
| TGATTTGGGAACATCAGCAT+TGG | 0.571232 | 1_4:-53597768 | Msa0170030:CDS |
| AGGTGAAAATGATACAAAGT+TGG | 0.571771 | 1_4:-53600983 | Msa0170030:CDS |
| GACACTAGCTCAACAAGTTG+AGG | 0.581000 | 1_4:-53599788 | Msa0170030:CDS |
| TTCAACTGAGAGCGAAGCGA+AGG | 0.581953 | 1_4:+53599940 | None:intergenic |
| GGCATCATGCCACCGTGACA+AGG | 0.582269 | 1_4:+53598701 | None:intergenic |
| CATCTTGAGGTGAGCCTGCG+AGG | 0.583442 | 1_4:+53600082 | None:intergenic |
| AAACACTCAGAGCAAAAGAA+AGG | 0.583994 | 1_4:+53599824 | None:intergenic |
| TTTGTACAGCGGCTACGAAG+CGG | 0.590359 | 1_4:-53599968 | Msa0170030:CDS |
| AAACTGATTAAGCTGGAAGG+TGG | 0.590664 | 1_4:-53599289 | Msa0170030:CDS |
| AGTGGTTATTCATCTCGTCC+AGG | 0.592091 | 1_4:-53601003 | Msa0170030:CDS |
| AACTGATTAAGCTGGAAGGT+GGG | 0.592572 | 1_4:-53599288 | Msa0170030:CDS |
| AATGATAAGATAACATCTTG+AGG | 0.602817 | 1_4:+53600069 | None:intergenic |
| TGAATAGTCCCTAGTTGCAA+GGG | 0.604887 | 1_4:+53601035 | None:intergenic |
| GTTGAATCTGCATTACCAGA+AGG | 0.604979 | 1_4:-53600186 | Msa0170030:CDS |
| CCGGAGTTATGGAACCTCGC+AGG | 0.605747 | 1_4:-53600096 | Msa0170030:CDS |
| GATGCTGCTTTAGATCAAAG+TGG | 0.610138 | 1_4:-53599187 | Msa0170030:CDS |
| AACAAGGTTTGTGTCGAAGA+CGG | 0.611581 | 1_4:-53599583 | Msa0170030:CDS |
| TTGATATCAAACTTGCCACA+TGG | 0.611629 | 1_4:+53597921 | None:intergenic |
| AAGGCAATTTCTCAGATGCA+TGG | 0.611767 | 1_4:-53599544 | Msa0170030:CDS |
| CCTGCGAGGTTCCATAACTC+CGG | 0.616519 | 1_4:+53600096 | None:intergenic |
| GACTATTCAGCATCAGCAAG+TGG | 0.619590 | 1_4:-53601021 | Msa0170030:CDS |
| GATAAAGTGTGTGTGTTCAA+GGG | 0.624345 | 1_4:-53601097 | Msa0170030:CDS |
| ATAGATACTGAATTCAATGG+TGG | 0.629564 | 1_4:+53601608 | None:intergenic |
| GAAGGTGGGTCAAGTATTAG+CGG | 0.637093 | 1_4:-53599274 | Msa0170030:CDS |
| ACTCTAGCTCTTTGTTACTG+CGG | 0.637326 | 1_4:-53599724 | Msa0170030:CDS |
| TGTGTTCTGAGAAAACTTGG+TGG | 0.639416 | 1_4:-53597893 | Msa0170030:CDS |
| AAGAAACTGATTAAGCTGGA+AGG | 0.640610 | 1_4:-53599292 | Msa0170030:CDS |
| TTACAACTCATAGAAGAAGT+GGG | 0.645249 | 1_4:+53601737 | None:intergenic |
| ACACAACAAACTCATCTGCA+TGG | 0.646543 | 1_4:-53597817 | Msa0170030:CDS |
| GCAAAGATTCAGATTGCACA+AGG | 0.650173 | 1_4:-53599130 | Msa0170030:CDS |
| TGTGGAGTGCAATCTAGAAG+CGG | 0.658093 | 1_4:+53598638 | None:intergenic |
| AGATATTGAGCCAAACCATG+TGG | 0.706345 | 1_4:-53597936 | Msa0170030:CDS |
| TGTACACAGCCTTGTCACGG+TGG | 0.710867 | 1_4:-53598710 | Msa0170030:intron |
| GCGGATATATACTACTAGCG+CGG | 0.736519 | 1_4:-53599255 | Msa0170030:CDS |
| GGTATACTCAGATTGCATGG+AGG | 0.769198 | 1_4:-53599638 | Msa0170030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCTATATTGCTATAAAAA+GGG | - | chr1_4:53597728-53597747 | Msa0170030:CDS | 15.0% |
| !!! | AAAACAACTTTAAAAAAACA+TGG | + | chr1_4:53598159-53598178 | None:intergenic | 15.0% |
| !!! | TTAAATCTATGTTTTAATAC+AGG | - | chr1_4:53600474-53600493 | Msa0170030:intron | 15.0% |
| !! | TATAAACTTATACAAAAATG+TGG | + | chr1_4:53601158-53601177 | None:intergenic | 15.0% |
| !! | ATCAATAACACTAAAGTATA+GGG | + | chr1_4:53597635-53597654 | None:intergenic | 20.0% |
| !! | AATCAATAACACTAAAGTAT+AGG | + | chr1_4:53597636-53597655 | None:intergenic | 20.0% |
| !! | CTTTCTATATTGCTATAAAA+AGG | - | chr1_4:53597727-53597746 | Msa0170030:CDS | 20.0% |
| !! | ATTATAGATACTGAATTCAA+TGG | + | chr1_4:53597812-53597831 | None:intergenic | 20.0% |
| !! | GAATTCAGTATCTATAATAT+AGG | - | chr1_4:53597814-53597833 | Msa0170030:CDS | 20.0% |
| !!! | AATTTGTTGATCAGAAATTT+TGG | - | chr1_4:53597883-53597902 | Msa0170030:CDS | 20.0% |
| !! | AATTCTTGAGTTAGTTAATT+TGG | - | chr1_4:53597931-53597950 | Msa0170030:CDS | 20.0% |
| !! | TTAGTCTATGTTTAGATTTA+CGG | + | chr1_4:53598077-53598096 | None:intergenic | 20.0% |
| !! | GAATTACTTAACAAAATTCA+AGG | + | chr1_4:53598110-53598129 | None:intergenic | 20.0% |
| !! | AAGATGTTATCTTATCATTT+AGG | - | chr1_4:53599349-53599368 | Msa0170030:CDS | 20.0% |
| !! | TTTAATACAGGTATGATTAT+AGG | - | chr1_4:53600486-53600505 | Msa0170030:intron | 20.0% |
| ! | TCTTTGTGAGTGAATTTAAT+AGG | - | chr1_4:53597571-53597590 | Msa0170030:three_prime_UTR | 25.0% |
| !! | CTTATTTCATTTTGTCTTGT+GGG | - | chr1_4:53597605-53597624 | Msa0170030:three_prime_UTR | 25.0% |
| !! | GTTTTCTAACATTTAACTCT+AGG | - | chr1_4:53597750-53597769 | Msa0170030:CDS | 25.0% |
| ! | ATCAAAATTACAGTGACTAA+CGG | + | chr1_4:53597997-53598016 | None:intergenic | 25.0% |
| ! | AGAAAAAGTTTAGCATTAGA+AGG | - | chr1_4:53598280-53598299 | Msa0170030:intron | 25.0% |
| ! | GAAAAAGTTTAGCATTAGAA+GGG | - | chr1_4:53598281-53598300 | Msa0170030:intron | 25.0% |
| ! | AAGTGGTTATTTAAACTATG+AGG | - | chr1_4:53598494-53598513 | Msa0170030:intron | 25.0% |
| !! | GATATAGACATTTTCATCTT+TGG | + | chr1_4:53598796-53598815 | None:intergenic | 25.0% |
| !!! | ACAATCTGAAACAAAGTTTT+CGG | + | chr1_4:53599259-53599278 | None:intergenic | 25.0% |
| ! | AATGATAAGATAACATCTTG+AGG | + | chr1_4:53599348-53599367 | None:intergenic | 25.0% |
| ! | TTTGAAAAATAGAGAGAACT+CGG | - | chr1_4:53599755-53599774 | Msa0170030:CDS | 25.0% |
| ! | CAAAGATTAAGAACAATGTA+AGG | + | chr1_4:53600053-53600072 | None:intergenic | 25.0% |
| ! | TCAAAAAAAGTTTGTAGATG+CGG | - | chr1_4:53600193-53600212 | Msa0170030:CDS | 25.0% |
| ! | TTTAGATCAAAGTGGAAAAT+GGG | - | chr1_4:53600235-53600254 | Msa0170030:intron | 25.0% |
| ! | CAAGTCCATAATAAAAATCT+AGG | - | chr1_4:53600356-53600375 | Msa0170030:intron | 25.0% |
| !! | CAGTTCCTAGATTTTTATTA+TGG | + | chr1_4:53600364-53600383 | None:intergenic | 25.0% |
| ! | AAAACAAATCACAAACATGA+TGG | - | chr1_4:53600914-53600933 | Msa0170030:intron | 25.0% |
| !! | TTTGTTAAGACAATTGCTTT+TGG | + | chr1_4:53601181-53601200 | None:intergenic | 25.0% |
| !!! | GCTTTTTTTTTTTTTTGCTG+TGG | + | chr1_4:53601238-53601257 | None:intergenic | 25.0% |
| ! | TCATTAAGTTAAGTTTATGC+AGG | - | chr1_4:53601395-53601414 | Msa0170030:intron | 25.0% |
| !!! | AAAAGGTGTTATTGTCTAAA+GGG | + | chr1_4:53601728-53601747 | None:intergenic | 25.0% |
| !!! | AAAAAGGTGTTATTGTCTAA+AGG | + | chr1_4:53601729-53601748 | None:intergenic | 25.0% |
| !! | AACACCTTTTTATTATGTGT+CGG | - | chr1_4:53601738-53601757 | Msa0170030:five_prime_UTR | 25.0% |
| ! | GCTTATTTCATTTTGTCTTG+TGG | - | chr1_4:53597604-53597623 | Msa0170030:three_prime_UTR | 30.0% |
| TTACAACTCATAGAAGAAGT+GGG | + | chr1_4:53597680-53597699 | None:intergenic | 30.0% | |
| ATTACAACTCATAGAAGAAG+TGG | + | chr1_4:53597681-53597700 | None:intergenic | 30.0% | |
| ATAGATACTGAATTCAATGG+TGG | + | chr1_4:53597809-53597828 | None:intergenic | 30.0% | |
| GTTTAGATTTACGGTGAATT+TGG | + | chr1_4:53598068-53598087 | None:intergenic | 30.0% | |
| !! | TGCTTTATTGATGATGTTTC+AGG | - | chr1_4:53598224-53598243 | Msa0170030:intron | 30.0% |
| TTAGCATTAGAAGGGAATTA+AGG | - | chr1_4:53598289-53598308 | Msa0170030:intron | 30.0% | |
| ! | AACTTTGTATCATTTTCACC+TGG | + | chr1_4:53598432-53598451 | None:intergenic | 30.0% |
| AGGTGAAAATGATACAAAGT+TGG | - | chr1_4:53598431-53598450 | Msa0170030:intron | 30.0% | |
| GGTTATTTAAACTATGAGGT+TGG | - | chr1_4:53598498-53598517 | Msa0170030:intron | 30.0% | |
| TTAAACTGTTCATCCAAACA+TGG | + | chr1_4:53598589-53598608 | None:intergenic | 30.0% | |
| ! | CTAGATGAACTTTTCCTTAT+AGG | - | chr1_4:53598675-53598694 | Msa0170030:CDS | 30.0% |
| GCATAGTTTACAACACAATT+AGG | - | chr1_4:53599123-53599142 | Msa0170030:CDS | 30.0% | |
| !! | CAATCTGAAACAAAGTTTTC+GGG | + | chr1_4:53599258-53599277 | None:intergenic | 30.0% |
| ATCAACTGCAAGAATACAAA+AGG | - | chr1_4:53599407-53599426 | Msa0170030:CDS | 30.0% | |
| AAAAATTTGTGCAGACAACA+AGG | - | chr1_4:53599815-53599834 | Msa0170030:CDS | 30.0% | |
| GCATGGAAAATGTAATCAAA+TGG | - | chr1_4:53599887-53599906 | Msa0170030:CDS | 30.0% | |
| GCTATTGCAAATTGTTTACT+AGG | - | chr1_4:53599912-53599931 | Msa0170030:CDS | 30.0% | |
| CTTTAGATCAAAGTGGAAAA+TGG | - | chr1_4:53600234-53600253 | Msa0170030:intron | 30.0% | |
| AAATCTAGGAACTGCAAATA+AGG | - | chr1_4:53600370-53600389 | Msa0170030:intron | 30.0% | |
| AACTGCAAATAAGGTTATGA+AGG | - | chr1_4:53600379-53600398 | Msa0170030:intron | 30.0% | |
| ! | TGAATAACACAAAGTACCAA+CGG | - | chr1_4:53600425-53600444 | Msa0170030:intron | 30.0% |
| AGATTTAGCAAGACAAACTT+CGG | + | chr1_4:53600737-53600756 | None:intergenic | 30.0% | |
| AGATATACAGTATATACCTG+TGG | + | chr1_4:53600797-53600816 | None:intergenic | 30.0% | |
| TGTTATTGAAAGTCAAGCTA+GGG | + | chr1_4:53600833-53600852 | None:intergenic | 30.0% | |
| ! | TTGTTATTGAAAGTCAAGCT+AGG | + | chr1_4:53600834-53600853 | None:intergenic | 30.0% |
| AGTCTATATACTCAGACAAA+TGG | + | chr1_4:53600883-53600902 | None:intergenic | 30.0% | |
| ! | TTTCAAGTCAGAATCAATTC+TGG | + | chr1_4:53601053-53601072 | None:intergenic | 30.0% |
| ! | TCTGACTTGAAACTAGAATT+TGG | - | chr1_4:53601061-53601080 | Msa0170030:CDS | 30.0% |
| TAAGTTCATGTTTATGTCTG+CGG | + | chr1_4:53601318-53601337 | None:intergenic | 30.0% | |
| GGTTTACTTTATGAAGCAAA+AGG | - | chr1_4:53601416-53601435 | Msa0170030:intron | 30.0% | |
| TATTGTCTAAAGGGTTCAAT+GGG | + | chr1_4:53601719-53601738 | None:intergenic | 30.0% | |
| TTATTGTCTAAAGGGTTCAA+TGG | + | chr1_4:53601720-53601739 | None:intergenic | 30.0% | |
| GATACCGACACATAATAAAA+AGG | + | chr1_4:53601745-53601764 | None:intergenic | 30.0% | |
| GAAGAAGTGGGAAGAAAAAA+AGG | + | chr1_4:53597668-53597687 | None:intergenic | 35.0% | |
| TGATAAAGTGTGTGTGTTCA+AGG | - | chr1_4:53598316-53598335 | Msa0170030:intron | 35.0% | |
| GATAAAGTGTGTGTGTTCAA+GGG | - | chr1_4:53598317-53598336 | Msa0170030:intron | 35.0% | |
| CAAACATGGTCTAAGTACAT+GGG | + | chr1_4:53598575-53598594 | None:intergenic | 35.0% | |
| ATACTCAAGTCTTCCTAACA+AGG | + | chr1_4:53598710-53598729 | None:intergenic | 35.0% | |
| GGAAGACTTGAGTATCAAAA+AGG | - | chr1_4:53598715-53598734 | Msa0170030:intron | 35.0% | |
| ! | TTGTGGACTGCGTTTATTAT+CGG | + | chr1_4:53598833-53598852 | None:intergenic | 35.0% |
| ! | ACATGCTGTTAGTTTACTTC+TGG | - | chr1_4:53598879-53598898 | Msa0170030:intron | 35.0% |
| GCTAAATCATTGCAAACTCT+TGG | - | chr1_4:53598919-53598938 | Msa0170030:intron | 35.0% | |
| AATCATTGCAAACTCTTGGA+AGG | - | chr1_4:53598923-53598942 | Msa0170030:intron | 35.0% | |
| GGAAAGCTTTGCTTTATCAT+TGG | - | chr1_4:53599370-53599389 | Msa0170030:CDS | 35.0% | |
| !!! | GCTTTGTTTCTTTTGTACAG+CGG | - | chr1_4:53599435-53599454 | Msa0170030:CDS | 35.0% |
| !! | GCTTCTTCTATGTTGTTTCT+TGG | + | chr1_4:53599513-53599532 | None:intergenic | 35.0% |
| AAACACTCAGAGCAAAAGAA+AGG | + | chr1_4:53599593-53599612 | None:intergenic | 35.0% | |
| GGAATTACTTCCAGAAACAA+TGG | - | chr1_4:53599647-53599666 | Msa0170030:CDS | 35.0% | |
| !! | TAGTTGCTTTGGATCTTTTG+AGG | - | chr1_4:53599727-53599746 | Msa0170030:CDS | 35.0% |
| !! | CGGAATCAAATTTTCAAGCA+AGG | - | chr1_4:53599851-53599870 | Msa0170030:CDS | 35.0% |
| ! | AGCTTCTGAGAAATTGATGA+AGG | - | chr1_4:53600019-53600038 | Msa0170030:CDS | 35.0% |
| AAGAAACTGATTAAGCTGGA+AGG | - | chr1_4:53600122-53600141 | Msa0170030:CDS | 35.0% | |
| GAAGACTAGAAATGGAAGTT+TGG | - | chr1_4:53600565-53600584 | Msa0170030:intron | 35.0% | |
| GAGGAGAACTGAACTTATAA+GGG | + | chr1_4:53600857-53600876 | None:intergenic | 35.0% | |
| AGAGGAGAACTGAACTTATA+AGG | + | chr1_4:53600858-53600877 | None:intergenic | 35.0% | |
| TGTACAATGTAGCGTATGTT+TGG | - | chr1_4:53600937-53600956 | Msa0170030:CDS | 35.0% | |
| TTGATATCAAACTTGCCACA+TGG | + | chr1_4:53601496-53601515 | None:intergenic | 35.0% | |
| ACTTCTCTACAAAGCTGATT+TGG | - | chr1_4:53601631-53601650 | Msa0170030:five_prime_UTR | 35.0% | |
| ! | CTTCTCTACAAAGCTGATTT+GGG | - | chr1_4:53601632-53601651 | Msa0170030:five_prime_UTR | 35.0% |
| GCTGTAAAAGGGAAAGAGAA+TGG | + | chr1_4:53597784-53597803 | None:intergenic | 40.0% | |
| CAATGGTGGTTGCTGTAAAA+GGG | + | chr1_4:53597795-53597814 | None:intergenic | 40.0% | |
| TCAATGGTGGTTGCTGTAAA+AGG | + | chr1_4:53597796-53597815 | None:intergenic | 40.0% | |
| TGAATAGTCCCTAGTTGCAA+GGG | + | chr1_4:53598382-53598401 | None:intergenic | 40.0% | |
| ATAACCACTTTCACGTAGAG+AGG | + | chr1_4:53598484-53598503 | None:intergenic | 40.0% | |
| CCAAACATGGTCTAAGTACA+TGG | + | chr1_4:53598576-53598595 | None:intergenic | 40.0% | |
| CCATGTACTTAGACCATGTT+TGG | - | chr1_4:53598573-53598592 | Msa0170030:intron | 40.0% | |
| GCTGCACTTCATGTATTTGA+AGG | - | chr1_4:53598748-53598767 | Msa0170030:intron | 40.0% | |
| !! | GAAGGCACTAAATCACTTTG+TGG | + | chr1_4:53598850-53598869 | None:intergenic | 40.0% |
| ! | ACAGCATGTATCGACATAGA+AGG | + | chr1_4:53598868-53598887 | None:intergenic | 40.0% |
| !!! | TCTGGAAGCTGTTTTTCTCA+AGG | - | chr1_4:53598897-53598916 | Msa0170030:intron | 40.0% |
| CAAACTCTTGGAAGGTTTCA+AGG | - | chr1_4:53598931-53598950 | Msa0170030:intron | 40.0% | |
| GTCAGTATCAATGTCATGTC+TGG | - | chr1_4:53599031-53599050 | Msa0170030:CDS | 40.0% | |
| GTTGAATCTGCATTACCAGA+AGG | - | chr1_4:53599228-53599247 | Msa0170030:CDS | 40.0% | |
| AATCTGCATTACCAGAAGGT+TGG | - | chr1_4:53599232-53599251 | Msa0170030:CDS | 40.0% | |
| AAATGCTGTAGAACTGCTTC+CGG | - | chr1_4:53599299-53599318 | Msa0170030:CDS | 40.0% | |
| !! | TCTTTTGCTCTGAGTGTTTG+TGG | - | chr1_4:53599594-53599613 | Msa0170030:CDS | 40.0% |
| TCTCTTCTCTCCATTGTTTC+TGG | + | chr1_4:53599660-53599679 | None:intergenic | 40.0% | |
| !! | ACTCTAGCTCTTTGTTACTG+CGG | - | chr1_4:53599690-53599709 | Msa0170030:CDS | 40.0% |
| AACAAGGTTTGTGTCGAAGA+CGG | - | chr1_4:53599831-53599850 | Msa0170030:CDS | 40.0% | |
| AAGGCAATTTCTCAGATGCA+TGG | - | chr1_4:53599870-53599889 | Msa0170030:CDS | 40.0% | |
| CGCAAAGAAACTGATTAAGC+TGG | - | chr1_4:53600118-53600137 | Msa0170030:CDS | 40.0% | |
| AAACTGATTAAGCTGGAAGG+TGG | - | chr1_4:53600125-53600144 | Msa0170030:CDS | 40.0% | |
| AACTGATTAAGCTGGAAGGT+GGG | - | chr1_4:53600126-53600145 | Msa0170030:CDS | 40.0% | |
| ! | ACTACTAGCGCGGATTTTAT+CGG | - | chr1_4:53600169-53600188 | Msa0170030:CDS | 40.0% |
| !! | GATGCTGCTTTAGATCAAAG+TGG | - | chr1_4:53600227-53600246 | Msa0170030:intron | 40.0% |
| CAAAGTGGAAAATGGGATCA+AGG | - | chr1_4:53600242-53600261 | Msa0170030:intron | 40.0% | |
| GCAAAGATTCAGATTGCACA+AGG | - | chr1_4:53600284-53600303 | Msa0170030:intron | 40.0% | |
| ! | ACACAAAGTACCAACGGAAA+AGG | - | chr1_4:53600431-53600450 | Msa0170030:intron | 40.0% |
| ! | CTCTAAGTTTCCTTTTCCGT+TGG | + | chr1_4:53600444-53600463 | None:intergenic | 40.0% |
| TGCAATCTAGAAGCGGAATA+AGG | + | chr1_4:53600772-53600791 | None:intergenic | 40.0% | |
| ATACTCAGACAAATGGCAAG+AGG | + | chr1_4:53600876-53600895 | None:intergenic | 40.0% | |
| !! | CGTATGTTTGGTTCCACTTT+TGG | - | chr1_4:53600949-53600968 | Msa0170030:CDS | 40.0% |
| !! | ATGTTTGGTTCCACTTTTGG+AGG | - | chr1_4:53600952-53600971 | Msa0170030:CDS | 40.0% |
| TTTGCCTCTAACCCTATGAT+TGG | - | chr1_4:53601088-53601107 | Msa0170030:CDS | 40.0% | |
| AGTTCCAATCATAGGGTTAG+AGG | + | chr1_4:53601095-53601114 | None:intergenic | 40.0% | |
| TAACCCTATGATTGGAACTG+CGG | - | chr1_4:53601096-53601115 | Msa0170030:CDS | 40.0% | |
| AGATATTGAGCCAAACCATG+TGG | - | chr1_4:53601478-53601497 | Msa0170030:intron | 40.0% | |
| ATCAAACTTGCCACATGGTT+TGG | + | chr1_4:53601491-53601510 | None:intergenic | 40.0% | |
| !! | GCTTGTGTTCTGAGAAAACT+TGG | - | chr1_4:53601518-53601537 | Msa0170030:intron | 40.0% |
| !! | TGTGTTCTGAGAAAACTTGG+TGG | - | chr1_4:53601521-53601540 | Msa0170030:intron | 40.0% |
| GCTTTAATGCATCAGTGAGA+AGG | + | chr1_4:53601574-53601593 | None:intergenic | 40.0% | |
| ACACAACAAACTCATCTGCA+TGG | - | chr1_4:53601597-53601616 | Msa0170030:intron | 40.0% | |
| TCATCTGCATGGTACAATCT+TGG | - | chr1_4:53601608-53601627 | Msa0170030:five_prime_UTR | 40.0% | |
| ! | TGATTTGGGAACATCAGCAT+TGG | - | chr1_4:53601646-53601665 | Msa0170030:five_prime_UTR | 40.0% |
| !!! | ACGCTGACACTGATTTTCTG+AGG | + | chr1_4:53598038-53598057 | None:intergenic | 45.0% |
| ATCAGAGTCCCTTGCAACTA+GGG | - | chr1_4:53598371-53598390 | Msa0170030:intron | 45.0% | |
| CTGAATAGTCCCTAGTTGCA+AGG | + | chr1_4:53598383-53598402 | None:intergenic | 45.0% | |
| GACTATTCAGCATCAGCAAG+TGG | - | chr1_4:53598393-53598412 | Msa0170030:intron | 45.0% | |
| AGTGGTTATTCATCTCGTCC+AGG | - | chr1_4:53598411-53598430 | Msa0170030:intron | 45.0% | |
| GAATCCTCTCTACGTGAAAG+TGG | - | chr1_4:53598477-53598496 | Msa0170030:intron | 45.0% | |
| ACATGGTCTAAGTACATGGG+AGG | + | chr1_4:53598572-53598591 | None:intergenic | 45.0% | |
| ! | CAAGGCTCTAGCTTCCTATA+AGG | + | chr1_4:53598692-53598711 | None:intergenic | 45.0% |
| !! | TAGGAAGCTAGAGCCTTGTT+AGG | - | chr1_4:53598694-53598713 | Msa0170030:CDS | 45.0% |
| TAGAACTGCTTCCGGAGTTA+TGG | - | chr1_4:53599307-53599326 | Msa0170030:CDS | 45.0% | |
| GACACTAGCTCAACAAGTTG+AGG | - | chr1_4:53599626-53599645 | Msa0170030:CDS | 45.0% | |
| AGGCGAGCATATAGTTGCTT+TGG | - | chr1_4:53599716-53599735 | Msa0170030:CDS | 45.0% | |
| CTCGGTATACTCAGATTGCA+TGG | - | chr1_4:53599773-53599792 | Msa0170030:CDS | 45.0% | |
| GGTATACTCAGATTGCATGG+AGG | - | chr1_4:53599776-53599795 | Msa0170030:CDS | 45.0% | |
| GAAGGTGGGTCAAGTATTAG+CGG | - | chr1_4:53600140-53600159 | Msa0170030:CDS | 45.0% | |
| GCGGATATATACTACTAGCG+CGG | - | chr1_4:53600159-53600178 | Msa0170030:CDS | 45.0% | |
| TCGCGACAGAAGACTAGAAA+TGG | - | chr1_4:53600557-53600576 | Msa0170030:intron | 45.0% | |
| TGTGGAGTGCAATCTAGAAG+CGG | + | chr1_4:53600779-53600798 | None:intergenic | 45.0% | |
| !! | TTTGGTTCCACTTTTGGAGG+AGG | - | chr1_4:53600955-53600974 | Msa0170030:CDS | 45.0% |
| AATTTCGCCTCCTCCAAAAG+TGG | + | chr1_4:53600965-53600984 | None:intergenic | 45.0% | |
| CATCCGCAGTTCCAATCATA+GGG | + | chr1_4:53601102-53601121 | None:intergenic | 45.0% | |
| TCATCCGCAGTTCCAATCAT+AGG | + | chr1_4:53601103-53601122 | None:intergenic | 45.0% | |
| AAGCAACCTTAGCACCTGTT+TGG | - | chr1_4:53601254-53601273 | Msa0170030:intron | 45.0% | |
| ATGCAACCAAACAGGTGCTA+AGG | + | chr1_4:53601263-53601282 | None:intergenic | 45.0% | |
| TTAGCACCTGTTTGGTTGCA+TGG | - | chr1_4:53601262-53601281 | Msa0170030:intron | 45.0% | |
| ACATCACCATGCAACCAAAC+AGG | + | chr1_4:53601271-53601290 | None:intergenic | 45.0% | |
| CATCAGAGTCCCTTGCAACT+AGG | - | chr1_4:53598370-53598389 | Msa0170030:intron | 50.0% | |
| !! | AAGTTTTCGGGCCAACCTTC+TGG | + | chr1_4:53599246-53599265 | None:intergenic | 50.0% |
| TTTGTACAGCGGCTACGAAG+CGG | - | chr1_4:53599446-53599465 | Msa0170030:CDS | 50.0% | |
| TTCAACTGAGAGCGAAGCGA+AGG | + | chr1_4:53599477-53599496 | None:intergenic | 50.0% | |
| GCTCTTTGTTACTGCGGTGA+AGG | - | chr1_4:53599696-53599715 | Msa0170030:CDS | 50.0% | |
| TGACAAGGCTGTGTACACAG+CGG | + | chr1_4:53600701-53600720 | None:intergenic | 50.0% | |
| ! | CTGTGTACACAGCCTTGTCA+CGG | - | chr1_4:53600701-53600720 | Msa0170030:CDS | 50.0% |
| GCTTCTAGATTGCACTCCAC+AGG | - | chr1_4:53600778-53600797 | Msa0170030:intron | 50.0% | |
| ! | ATGTGTCGGTATCGTGTCAC+TGG | - | chr1_4:53601752-53601771 | Msa0170030:five_prime_UTR | 50.0% |
| CCTGCGAGGTTCCATAACTC+CGG | + | chr1_4:53599321-53599340 | None:intergenic | 55.0% | |
| ! | TGTACACAGCCTTGTCACGG+TGG | - | chr1_4:53600704-53600723 | Msa0170030:CDS | 55.0% |
| TGGCAGACACTGACACGTGT+TGG | - | chr1_4:53601772-53601791 | Msa0170030:five_prime_UTR | 55.0% | |
| CCGGAGTTATGGAACCTCGC+AGG | - | chr1_4:53599318-53599337 | Msa0170030:CDS | 60.0% | |
| CATCTTGAGGTGAGCCTGCG+AGG | + | chr1_4:53599335-53599354 | None:intergenic | 60.0% | |
| GGCATCATGCCACCGTGACA+AGG | + | chr1_4:53600716-53600735 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 53597550 | 53601886 | 53597550 | ID=Msa0170030;Name=Msa0170030 |
| chr1_4 | mRNA | 53597550 | 53601886 | 53597550 | ID=Msa0170030-mRNA-1;Parent=Msa0170030;Name=Msa0170030-mRNA-1;_AED=0.12;_eAED=0.12;_QI=295|0.6|0.5|1|0.6|0.5|6|147|680 |
| chr1_4 | exon | 53597550 | 53598019 | 53597550 | ID=Msa0170030-mRNA-1:exon:15997;Parent=Msa0170030-mRNA-1 |
| chr1_4 | exon | 53598637 | 53598723 | 53598637 | ID=Msa0170030-mRNA-1:exon:15996;Parent=Msa0170030-mRNA-1 |
| chr1_4 | exon | 53599029 | 53600243 | 53599029 | ID=Msa0170030-mRNA-1:exon:15995;Parent=Msa0170030-mRNA-1 |
| chr1_4 | exon | 53600583 | 53600739 | 53600583 | ID=Msa0170030-mRNA-1:exon:15994;Parent=Msa0170030-mRNA-1 |
| chr1_4 | exon | 53600921 | 53601190 | 53600921 | ID=Msa0170030-mRNA-1:exon:15993;Parent=Msa0170030-mRNA-1 |
| chr1_4 | exon | 53601601 | 53601886 | 53601601 | ID=Msa0170030-mRNA-1:exon:15992;Parent=Msa0170030-mRNA-1 |
| chr1_4 | five_prime_UTR | 53601601 | 53601886 | 53601601 | ID=Msa0170030-mRNA-1:five_prime_utr;Parent=Msa0170030-mRNA-1 |
| chr1_4 | five_prime_UTR | 53601182 | 53601190 | 53601182 | ID=Msa0170030-mRNA-1:five_prime_utr;Parent=Msa0170030-mRNA-1 |
| chr1_4 | CDS | 53600921 | 53601181 | 53600921 | ID=Msa0170030-mRNA-1:cds;Parent=Msa0170030-mRNA-1 |
| chr1_4 | CDS | 53600583 | 53600739 | 53600583 | ID=Msa0170030-mRNA-1:cds;Parent=Msa0170030-mRNA-1 |
| chr1_4 | CDS | 53599029 | 53600243 | 53599029 | ID=Msa0170030-mRNA-1:cds;Parent=Msa0170030-mRNA-1 |
| chr1_4 | CDS | 53598637 | 53598723 | 53598637 | ID=Msa0170030-mRNA-1:cds;Parent=Msa0170030-mRNA-1 |
| chr1_4 | CDS | 53597697 | 53598019 | 53597697 | ID=Msa0170030-mRNA-1:cds;Parent=Msa0170030-mRNA-1 |
| chr1_4 | three_prime_UTR | 53597550 | 53597696 | 53597550 | ID=Msa0170030-mRNA-1:three_prime_utr;Parent=Msa0170030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
