AlfalfaGEDB | Msa1019110

M. sativa cultivar zhongmu-4 / Msa1019110

KEGG: K02912
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0015934 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:1990904
PFAM: PF01655.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1019110	XP_024625350.1	99.248	133	1	0	115	247	1	133	1.36e-91	276

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1019110	sp\|P49211\|RL321_ARATH	88.722	133	15	0	115	247	1	133	9.07e-86	254

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1019110	I3SPQ1	99.248	133	1	0	115	247	1	133	6.48e-92	276

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0114600	Msa1019110	0.810425	1.159963e-50	-8.615850e-47
Msa0167860	Msa1019110	0.846012	2.836213e-59	-8.615850e-47
Msa0270160	Msa1019110	0.800425	1.449890e-48	-8.615850e-47
Msa0277600	Msa1019110	0.823812	1.132220e-53	-8.615850e-47
Msa0281330	Msa1019110	0.826580	2.508888e-54	-8.615850e-47
Msa0281370	Msa1019110	0.811550	6.619526e-51	-8.615850e-47
Msa0426090	Msa1019110	0.822488	2.305831e-53	-8.615850e-47
Msa0426250	Msa1019110	0.840887	6.634438e-58	-8.615850e-47
Msa0472480	Msa1019110	0.815864	7.431401e-52	-8.615850e-47
Msa0547920	Msa1019110	0.857863	1.221608e-62	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1019110	MtrunA17_Chr7g0234631	99.248	133	1	0	115	247	1	133	1.25e-95	276
Msa1019110	MtrunA17_Chr8g0352341	97.744	133	3	0	115	247	1	133	1.18e-94	273
Msa1019110	MtrunA17_Chr7g0215831	97.744	133	3	0	115	247	1	133	2.67e-93	270
Msa1019110	MtrunA17_Chr8g0378631	67.669	133	9	1	115	247	1	99	1.33e-53	168

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1019110	AT4G18100.1	88.722	133	15	115	247	1	133	9.22e-87	254
Msa1019110	AT5G46430.2	86.466	133	18	115	247	1	133	1.64e-85	251
Msa1019110	AT5G46430.1	86.466	133	18	115	247	1	133	1.64e-85	251

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Find 64 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGATTGTGAATGTGGA+TGG	0.609050	7_1:+40266530	Msa1019110:CDS
AAAGGAGATCGTTGAACGTG+CGG	0.614630	7_1:+40268785	Msa1019110:CDS
AAATGAGGCAGCAGAAGCTA+GGG	0.508688	7_1:-40266940	None:intergenic
AAGCCTTTAGAGGGGAAGAT+AGG	0.424729	7_1:-40266365	None:intergenic
AATATATTGTGTTGGTGTCG+GGG	0.574161	7_1:-40266465	None:intergenic
ACAAACTTCTTGAATCCATT+AGG	0.438510	7_1:-40268587	None:intergenic
ACAATCTTCTTGGTGAGCAA+TGG	0.494679	7_1:-40267853	None:intergenic
ACCCGCCACTATTTGCCTAA+TGG	0.370226	7_1:+40268572	Msa1019110:CDS
ACCTTTCTAGCGCTTTGATA+AGG	0.418954	7_1:+40266306	None:intergenic
ACGCTTCTTCACAATCTTCT+TGG	0.281194	7_1:-40267863	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAGGCATCTGATCAATATA+AGG	-	chr7_1:40266491-40266510	None:intergenic	30.0%
TATATCTGGTAGATAACTAC+AGG	-	chr7_1:40266664-40266683	None:intergenic	30.0%
CATCCACCGTAAAAATAATA+TGG	-	chr7_1:40266872-40266891	None:intergenic	30.0%
AGCATCGTATATAGGAAAAA+TGG	-	chr7_1:40267064-40267083	None:intergenic	30.0%
TTTATTATGCTCATAGGGAT+AGG	+	chr7_1:40267395-40267414	Msa1019110:intron	30.0%
TTATTATGCTCATAGGGATA+GGG	+	chr7_1:40267396-40267415	Msa1019110:intron	30.0%
TAATCCAACACAACTTATTG+TGG	-	chr7_1:40267499-40267518	None:intergenic	30.0%
CAATAAGTTGTGTTGGATTA+AGG	+	chr7_1:40267499-40267518	Msa1019110:intron	30.0%
ATTGCTACACTGACAAAATA+TGG	-	chr7_1:40268288-40268307	None:intergenic	30.0%
ACAAACTTCTTGAATCCATT+AGG	-	chr7_1:40268590-40268609	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	40266317	40269174	40266317	ID=Msa1019110;Name=Msa1019110
chr7_1	mRNA	40266317	40269174	40266317	ID=Msa1019110-mRNA-1;Parent=Msa1019110;Name=Msa1019110-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|0.5\|0.4\|1\|0.5\|0.4\|5\|305\|247
chr7_1	exon	40266317	40266557	40266317	ID=Msa1019110-mRNA-1:exon:7770;Parent=Msa1019110-mRNA-1
chr7_1	exon	40266901	40266996	40266901	ID=Msa1019110-mRNA-1:exon:7771;Parent=Msa1019110-mRNA-1
chr7_1	exon	40267839	40267933	40267839	ID=Msa1019110-mRNA-1:exon:7772;Parent=Msa1019110-mRNA-1
chr7_1	exon	40268473	40268654	40268473	ID=Msa1019110-mRNA-1:exon:7773;Parent=Msa1019110-mRNA-1
chr7_1	exon	40268740	40269174	40268740	ID=Msa1019110-mRNA-1:exon:7774;Parent=Msa1019110-mRNA-1
chr7_1	CDS	40266317	40266557	40266317	ID=Msa1019110-mRNA-1:cds;Parent=Msa1019110-mRNA-1
chr7_1	CDS	40266901	40266996	40266901	ID=Msa1019110-mRNA-1:cds;Parent=Msa1019110-mRNA-1
chr7_1	CDS	40267839	40267933	40267839	ID=Msa1019110-mRNA-1:cds;Parent=Msa1019110-mRNA-1
chr7_1	CDS	40268473	40268654	40268473	ID=Msa1019110-mRNA-1:cds;Parent=Msa1019110-mRNA-1
chr7_1	CDS	40268740	40268869	40268740	ID=Msa1019110-mRNA-1:cds;Parent=Msa1019110-mRNA-1
chr7_1	three_prime_UTR	40268870	40269174	40268870	ID=Msa1019110-mRNA-1:three_prime_utr;Parent=Msa1019110-mRNA-1

Gene Sequence

>Msa1019110

GCTTTGATAAGGTCCCAAAAATTTTCTCCTTCTGGACGCTCATCATCTCCTATCTTCCCCTCTAAAGGCTTGTTGACGCACAATACTTCGCAGACAAAACCTTCATTACAGAAAAAGAAAAGTGTGTGTGTAGTTAATCCCTCTACGACCCCGACACCAACACAATATATTCCTTATATTGATCAGATGCCTAATGTTATGAAACATTATATTAAAAGGATTGTGAATGTGGATGGTGACGAGAATCACTACCTAATTGATATATATACCCAATACAAAACCCTAGCTTCTGCTGCCTCATTTGCTTCTTACATCTCTGAAGCAGCGATTCAAGCAGACAAGATGGCCGTTCCATTGCTCACCAAGAAGATTGTGAAGAAGCGTGTCAAGAGGTTCATCAGGCCACAAAGTGACAGGAAAATATGTGTGAAGCAAAGCTGGCGCAGGCCAAAGGGTATTGATTCACGAGTTAGGAGAAAATTCAAAGGAGTTACTTTGATGCCTAACATTGGATACGGCTCAGACAAGAAGACCCGCCACTATTTGCCTAATGGATTCAAGAAGTTTGTCGTGCACAATGTCCAGGACCTGGAACTTTTGATGATGCACAACAGGACATACTGTGCTGAGATTGCACACAATGTGTCAACCAGAAAAAGAAAGGAGATCGTTGAACGTGCGGCACAATTGGATGTTGTTGTCACCAACAAGCTGGCCAGGTTGCGCAGTCAAGAAGACGAGTGA

Protein sequence

>Msa1019110

ALIRSQKFSPSGRSSSPIFPSKGLLTHNTSQTKPSLQKKKSVCVVNPSTTPTPTQYIPYIDQMPNVMKHYIKRIVNVDGDENHYLIDIYTQYKTLASAASFASYISEAAIQADKMAVPLLTKKIVKKRVKRFIRPQSDRKICVKQSWRRPKGIDSRVRRKFKGVTLMPNIGYGSDKKTRHYLPNGFKKFVVHNVQDLELLMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVVTNKLARLRSQEDE*