Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1019110 | XP_024625350.1 | 99.248 | 133 | 1 | 0 | 115 | 247 | 1 | 133 | 1.36e-91 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1019110 | sp|P49211|RL321_ARATH | 88.722 | 133 | 15 | 0 | 115 | 247 | 1 | 133 | 9.07e-86 | 254 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1019110 | I3SPQ1 | 99.248 | 133 | 1 | 0 | 115 | 247 | 1 | 133 | 6.48e-92 | 276 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0114600 | Msa1019110 | 0.810425 | 1.159963e-50 | -8.615850e-47 |
| Msa0602900 | Msa1019110 | 0.848637 | 5.398039e-60 | -8.615850e-47 |
| Msa0605890 | Msa1019110 | 0.842819 | 2.049102e-58 | -8.615850e-47 |
| Msa0643960 | Msa1019110 | 0.849922 | 2.369134e-60 | -8.615850e-47 |
| Msa0686550 | Msa1019110 | 0.814927 | 1.200858e-51 | -8.615850e-47 |
| Msa0704860 | Msa1019110 | 0.845467 | 3.987968e-59 | -8.615850e-47 |
| Msa0790450 | Msa1019110 | 0.825663 | 4.144972e-54 | -8.615850e-47 |
| Msa0167860 | Msa1019110 | 0.846012 | 2.836213e-59 | -8.615850e-47 |
| Msa0426090 | Msa1019110 | 0.822488 | 2.305831e-53 | -8.615850e-47 |
| Msa0426250 | Msa1019110 | 0.840887 | 6.634438e-58 | -8.615850e-47 |
| Msa0472480 | Msa1019110 | 0.815864 | 7.431401e-52 | -8.615850e-47 |
| Msa1019110 | Msa1235950 | 0.815725 | 7.979220e-52 | -8.615850e-47 |
| Msa1019110 | Msa1235980 | 0.817168 | 3.791938e-52 | -8.615850e-47 |
| Msa1019110 | Msa1237040 | 0.825803 | 3.841022e-54 | -8.615850e-47 |
| Msa1019110 | Msa1316100 | 0.811153 | 8.071378e-51 | -8.615850e-47 |
| Msa1019110 | Msa1317390 | 0.832720 | 8.046024e-56 | -8.615850e-47 |
| Msa1019110 | Msa1341780 | 0.828998 | 6.580022e-55 | -8.615850e-47 |
| Msa1019110 | Msa1351020 | 0.824019 | 1.012737e-53 | -8.615850e-47 |
| Msa1019110 | Msa1353300 | 0.800987 | 1.113606e-48 | -8.615850e-47 |
| Msa1019110 | Msa1367540 | 0.809977 | 1.449141e-50 | -8.615850e-47 |
| Msa1019110 | Msa1450560 | 0.827904 | 1.209008e-54 | -8.615850e-47 |
| Msa1019110 | Msa1465700 | 0.816934 | 4.280508e-52 | -8.615850e-47 |
| Msa0270160 | Msa1019110 | 0.800425 | 1.449890e-48 | -8.615850e-47 |
| Msa0277600 | Msa1019110 | 0.823812 | 1.132220e-53 | -8.615850e-47 |
| Msa0281330 | Msa1019110 | 0.826580 | 2.508888e-54 | -8.615850e-47 |
| Msa0281370 | Msa1019110 | 0.811550 | 6.619526e-51 | -8.615850e-47 |
| Msa0547920 | Msa1019110 | 0.857863 | 1.221608e-62 | -8.615850e-47 |
| Msa0550420 | Msa1019110 | 0.806447 | 8.191328e-50 | -8.615850e-47 |
| Msa0573550 | Msa1019110 | 0.802139 | 6.463417e-49 | -8.615850e-47 |
| Msa0574780 | Msa1019110 | 0.806147 | 9.473541e-50 | -8.615850e-47 |
| Msa0929700 | Msa1019110 | 0.807658 | 4.538771e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1019110 | MtrunA17_Chr7g0234631 | 99.248 | 133 | 1 | 0 | 115 | 247 | 1 | 133 | 1.25e-95 | 276 |
| Msa1019110 | MtrunA17_Chr8g0352341 | 97.744 | 133 | 3 | 0 | 115 | 247 | 1 | 133 | 1.18e-94 | 273 |
| Msa1019110 | MtrunA17_Chr7g0215831 | 97.744 | 133 | 3 | 0 | 115 | 247 | 1 | 133 | 2.67e-93 | 270 |
| Msa1019110 | MtrunA17_Chr8g0378631 | 67.669 | 133 | 9 | 1 | 115 | 247 | 1 | 99 | 1.33e-53 | 168 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1019110 | AT4G18100.1 | 88.722 | 133 | 15 | 0 | 115 | 247 | 1 | 133 | 9.22e-87 | 254 |
| Msa1019110 | AT5G46430.2 | 86.466 | 133 | 18 | 0 | 115 | 247 | 1 | 133 | 1.64e-85 | 251 |
| Msa1019110 | AT5G46430.1 | 86.466 | 133 | 18 | 0 | 115 | 247 | 1 | 133 | 1.64e-85 | 251 |
Find 64 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATGAAACATTATATTAAA+AGG | 0.187398 | 7_1:+40266513 | Msa1019110:CDS |
| TTCTCAGGATTGTTGTCTTA+TGG | 0.221222 | 7_1:+40268935 | Msa1019110:three_prime_UTR |
| ATAATTTGTTTAGAGTATTT+TGG | 0.222627 | 7_1:+40269005 | Msa1019110:three_prime_UTR |
| ACGCTTCTTCACAATCTTCT+TGG | 0.281194 | 7_1:-40267863 | None:intergenic |
| CGTTGAACGTGCGGCACAAT+TGG | 0.294789 | 7_1:+40268794 | Msa1019110:CDS |
| ATTGGGTATATATATCAATT+AGG | 0.329951 | 7_1:-40266911 | None:intergenic |
| ACCCGCCACTATTTGCCTAA+TGG | 0.370226 | 7_1:+40268572 | Msa1019110:CDS |
| TTAGGCATCTGATCAATATA+AGG | 0.373818 | 7_1:-40266488 | None:intergenic |
| ATATAATGTTTCATAACATT+AGG | 0.373819 | 7_1:-40266506 | None:intergenic |
| GAATATATTGTGTTGGTGTC+GGG | 0.375654 | 7_1:-40266466 | None:intergenic |
| AGGGTATTGATTCACGAGTT+AGG | 0.379946 | 7_1:+40268492 | Msa1019110:CDS |
| CAAAGCTGGCGCAGGCCAAA+GGG | 0.395273 | 7_1:+40268473 | Msa1019110:CDS |
| GTGCGTCAACAAGCCTTTAG+AGG | 0.401446 | 7_1:-40266375 | None:intergenic |
| GCGCAACCTGGCCAGCTTGT+TGG | 0.406434 | 7_1:-40268829 | None:intergenic |
| TTGATTTCTGACTGCCTGAC+TGG | 0.410538 | 7_1:+40269122 | Msa1019110:three_prime_UTR |
| ACCTTTCTAGCGCTTTGATA+AGG | 0.418954 | 7_1:+40266306 | None:intergenic |
| AAGCCTTTAGAGGGGAAGAT+AGG | 0.424729 | 7_1:-40266365 | None:intergenic |
| GCAAAGCTGGCGCAGGCCAA+AGG | 0.427216 | 7_1:+40268472 | Msa1019110:intron |
| CAAATGAGGCAGCAGAAGCT+AGG | 0.438044 | 7_1:-40266941 | None:intergenic |
| ACAAACTTCTTGAATCCATT+AGG | 0.438510 | 7_1:-40268587 | None:intergenic |
| CATGGCAGACAATTGTTCTC+AGG | 0.447217 | 7_1:+40268920 | Msa1019110:three_prime_UTR |
| TTGTCACCAACAAGCTGGCC+AGG | 0.462847 | 7_1:+40268823 | Msa1019110:CDS |
| GTATGCAGCAAAGCTGGCGC+AGG | 0.468387 | 7_1:+40268465 | Msa1019110:intron |
| GGAATATATTGTGTTGGTGT+CGG | 0.472411 | 7_1:-40266467 | None:intergenic |
| TCTCCTATCTTCCCCTCTAA+AGG | 0.477028 | 7_1:+40266362 | Msa1019110:CDS |
| TGAATCCATTAGGCAAATAG+TGG | 0.478886 | 7_1:-40268577 | None:intergenic |
| TCATCAAAAGTTCCAGGTCC+TGG | 0.486161 | 7_1:-40268622 | None:intergenic |
| AGCGTGTCAAGAGGTTCATC+AGG | 0.489670 | 7_1:+40267881 | Msa1019110:CDS |
| GTTGGTGTCGGGGTCGTAGA+GGG | 0.493654 | 7_1:-40266455 | None:intergenic |
| TTGATGCCTAACATTGGATA+CGG | 0.494285 | 7_1:+40268536 | Msa1019110:CDS |
| ACAATCTTCTTGGTGAGCAA+TGG | 0.494679 | 7_1:-40267853 | None:intergenic |
| ACTCGTGAATCAATACCCTT+TGG | 0.495359 | 7_1:-40268488 | None:intergenic |
| TAGATAGCATTATACCAGTC+AGG | 0.498733 | 7_1:-40269136 | None:intergenic |
| TATTAAAAGGATTGTGAATG+TGG | 0.499390 | 7_1:+40266526 | Msa1019110:CDS |
| GTTTGTCGTGCACAATGTCC+AGG | 0.506762 | 7_1:+40268604 | Msa1019110:CDS |
| TCTGAGCCGTATCCAATGTT+AGG | 0.508029 | 7_1:-40268542 | None:intergenic |
| AAATGAGGCAGCAGAAGCTA+GGG | 0.508688 | 7_1:-40266940 | None:intergenic |
| TCATCAGGCCACAAAGTGAC+AGG | 0.512111 | 7_1:+40267896 | Msa1019110:CDS |
| TGTGCATCATCAAAAGTTCC+AGG | 0.513705 | 7_1:-40268628 | None:intergenic |
| TGCGTCAACAAGCCTTTAGA+GGG | 0.518680 | 7_1:-40266374 | None:intergenic |
| ATAATAAGAGAGAATTAAGA+TGG | 0.528868 | 7_1:-40269045 | None:intergenic |
| GTTACTTTGATGCCTAACAT+TGG | 0.534023 | 7_1:+40268530 | Msa1019110:CDS |
| GTCTTCTTGACTGCGCAACC+TGG | 0.545129 | 7_1:-40268841 | None:intergenic |
| AGAGATGTAAGAAGCAAATG+AGG | 0.548762 | 7_1:-40266955 | None:intergenic |
| GTTGTGGTATGCAGCAAAGC+TGG | 0.550030 | 7_1:+40268459 | Msa1019110:intron |
| TCCATTAGGCAAATAGTGGC+GGG | 0.556875 | 7_1:-40268573 | None:intergenic |
| CGTGCACAATGTCCAGGACC+TGG | 0.559607 | 7_1:+40268610 | Msa1019110:CDS |
| GGAGATGATGAGCGTCCAGA+AGG | 0.560723 | 7_1:-40266344 | None:intergenic |
| TCTGAAGCAGCGATTCAAGC+AGG | 0.569830 | 7_1:+40266975 | Msa1019110:CDS |
| AATATATTGTGTTGGTGTCG+GGG | 0.574161 | 7_1:-40266465 | None:intergenic |
| TGTTGGTGTCGGGGTCGTAG+AGG | 0.580459 | 7_1:-40266456 | None:intergenic |
| ATATAAGGAATATATTGTGT+TGG | 0.583261 | 7_1:-40266473 | None:intergenic |
| ATCCATTAGGCAAATAGTGG+CGG | 0.593712 | 7_1:-40268574 | None:intergenic |
| TGTGTCTTGTAGAGACAAGA+TGG | 0.594707 | 7_1:+40267825 | Msa1019110:intron |
| CGAGTTAGGAGAAAATTCAA+AGG | 0.594861 | 7_1:+40268506 | Msa1019110:CDS |
| TGACAGGAAAATATGTGTGA+AGG | 0.596948 | 7_1:+40267912 | Msa1019110:CDS |
| AAAAGGATTGTGAATGTGGA+TGG | 0.609050 | 7_1:+40266530 | Msa1019110:CDS |
| AAAGGAGATCGTTGAACGTG+CGG | 0.614630 | 7_1:+40268785 | Msa1019110:CDS |
| TGTTGTTGTCACCAACAAGC+TGG | 0.626162 | 7_1:+40268818 | Msa1019110:CDS |
| TTGTGAAGAAGCGTGTCAAG+AGG | 0.636300 | 7_1:+40267872 | Msa1019110:CDS |
| CTTCTTGGTGAGCAATGGAA+CGG | 0.637090 | 7_1:-40267848 | None:intergenic |
| TGTTGTTTATGGTATGAACA+TGG | 0.659331 | 7_1:+40268902 | Msa1019110:three_prime_UTR |
| ATTGTGAATGTGGATGGTGA+CGG | 0.671649 | 7_1:+40266536 | Msa1019110:CDS |
| GCGTCAACAAGCCTTTAGAG+GGG | 0.712612 | 7_1:-40266373 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATGAAACATTATATTAAA+AGG | + | chr7_1:40266513-40266532 | Msa1019110:CDS | 10.0% |
| !!! | AAATTTAAATTTTGTATATC+TGG | - | chr7_1:40266678-40266697 | None:intergenic | 10.0% |
| !!! | GTATTTTCATAATTTTTTAA+CGG | + | chr7_1:40267614-40267633 | Msa1019110:intron | 10.0% |
| !! | ATATAATGTTTCATAACATT+AGG | - | chr7_1:40266509-40266528 | None:intergenic | 15.0% |
| !!! | AAATTTTAAGAATGAATCTT+CGG | + | chr7_1:40266692-40266711 | Msa1019110:intron | 15.0% |
| !! | TAATGAGAGAATATTAATTA+GGG | - | chr7_1:40267012-40267031 | None:intergenic | 15.0% |
| !! | ATAATGAGAGAATATTAATT+AGG | - | chr7_1:40267013-40267032 | None:intergenic | 15.0% |
| !! | AATTAATATTCTCTCATTAT+TGG | + | chr7_1:40267013-40267032 | Msa1019110:intron | 15.0% |
| !! | CAAAATAAATTACTCAAATA+AGG | - | chr7_1:40267299-40267318 | None:intergenic | 15.0% |
| !! | ATTAACAAAGCTTATTTATT+TGG | - | chr7_1:40267571-40267590 | None:intergenic | 15.0% |
| !! | AATCAATTACATAAAACAAA+GGG | - | chr7_1:40267782-40267801 | None:intergenic | 15.0% |
| !! | TAATCAATTACATAAAACAA+AGG | - | chr7_1:40267783-40267802 | None:intergenic | 15.0% |
| !!! | ATAATTTGTTTAGAGTATTT+TGG | + | chr7_1:40269005-40269024 | Msa1019110:three_prime_UTR | 15.0% |
| !! | ATATAAGGAATATATTGTGT+TGG | - | chr7_1:40266476-40266495 | None:intergenic | 20.0% |
| !! | ATATGGTTACTGAAAAAAAT+GGG | - | chr7_1:40266855-40266874 | None:intergenic | 20.0% |
| !! | AATATGGTTACTGAAAAAAA+TGG | - | chr7_1:40266856-40266875 | None:intergenic | 20.0% |
| !!! | CAGTAACCATATTATTTTTA+CGG | + | chr7_1:40266863-40266882 | Msa1019110:intron | 20.0% |
| !! | ATTGGGTATATATATCAATT+AGG | - | chr7_1:40266914-40266933 | None:intergenic | 20.0% |
| !!! | ACCTAAAGATTTGATTTTTT+TGG | + | chr7_1:40267171-40267190 | Msa1019110:intron | 20.0% |
| !!! | CCTAAAGATTTGATTTTTTT+GGG | + | chr7_1:40267172-40267191 | Msa1019110:intron | 20.0% |
| !!! | TTAGTTTTTATTATGCTCAT+AGG | + | chr7_1:40267389-40267408 | Msa1019110:intron | 20.0% |
| !!! | TAGTTTTTATTATGCTCATA+GGG | + | chr7_1:40267390-40267409 | Msa1019110:intron | 20.0% |
| !!! | AATAGATTAGCTTTCAAAAA+TGG | + | chr7_1:40267943-40267962 | Msa1019110:intron | 20.0% |
| !! | AGATTGAATGTTATAATTTC+AGG | + | chr7_1:40268086-40268105 | Msa1019110:intron | 20.0% |
| !! | GATTGAATGTTATAATTTCA+GGG | + | chr7_1:40268087-40268106 | Msa1019110:intron | 20.0% |
| !!! | CATTTTCAGCAAAAATAATT+AGG | - | chr7_1:40268227-40268246 | None:intergenic | 20.0% |
| !! | AAATGGAAGTAAAAAATAAC+AGG | - | chr7_1:40268371-40268390 | None:intergenic | 20.0% |
| !! | ATACAGAACAACAAATAAAA+TGG | - | chr7_1:40268388-40268407 | None:intergenic | 20.0% |
| !! | TTCATGTAAATATCAGAATA+TGG | - | chr7_1:40268710-40268729 | None:intergenic | 20.0% |
| !!! | ATTTTTGCTTTTGTTGTTTA+TGG | + | chr7_1:40268891-40268910 | Msa1019110:three_prime_UTR | 20.0% |
| !! | ATAATAAGAGAGAATTAAGA+TGG | - | chr7_1:40269048-40269067 | None:intergenic | 20.0% |
| !! | CTTTTCTTTTTCTGTAATGA+AGG | - | chr7_1:40266419-40266438 | None:intergenic | 25.0% |
| ! | TATTAAAAGGATTGTGAATG+TGG | + | chr7_1:40266526-40266545 | Msa1019110:CDS | 25.0% |
| !! | AAATTTCGATTTTGTTACTC+CGG | - | chr7_1:40266629-40266648 | None:intergenic | 25.0% |
| !! | TGAGGACAATTTTGTAATTT+TGG | + | chr7_1:40266738-40266757 | Msa1019110:intron | 25.0% |
| !! | GAGGACAATTTTGTAATTTT+GGG | + | chr7_1:40266739-40266758 | Msa1019110:intron | 25.0% |
| !! | AGGACAATTTTGTAATTTTG+GGG | + | chr7_1:40266740-40266759 | Msa1019110:intron | 25.0% |
| !!! | TAACCATATTATTTTTACGG+TGG | + | chr7_1:40266866-40266885 | Msa1019110:intron | 25.0% |
| ! | CCCAAAAAAATCAAATCTTT+AGG | - | chr7_1:40267175-40267194 | None:intergenic | 25.0% |
| !!! | TTTTGAGTGAAATACAAACA+TGG | + | chr7_1:40267206-40267225 | Msa1019110:intron | 25.0% |
| ! | TTTGAGTGAAATACAAACAT+GGG | + | chr7_1:40267207-40267226 | Msa1019110:intron | 25.0% |
| !!! | TTTGATTTTCTGAAATCGTA+TGG | + | chr7_1:40267343-40267362 | Msa1019110:intron | 25.0% |
| ! | AATCATACACCACATTATTA+GGG | - | chr7_1:40267423-40267442 | None:intergenic | 25.0% |
| ! | AAATCATACACCACATTATT+AGG | - | chr7_1:40267424-40267443 | None:intergenic | 25.0% |
| !! | TAGTTTTTATCATACTCCTA+AGG | + | chr7_1:40267465-40267484 | Msa1019110:intron | 25.0% |
| ! | AATAAGTTGTGTTGGATTAA+GGG | + | chr7_1:40267500-40267519 | Msa1019110:intron | 25.0% |
| !! | TCTAAACAGAAAACACTTTT+AGG | - | chr7_1:40267705-40267724 | None:intergenic | 25.0% |
| ! | ATCAAATGATTTAGTGTGTT+TGG | + | chr7_1:40268011-40268030 | Msa1019110:intron | 25.0% |
| !! | CATTTTCAGCAAGAATAATT+AGG | - | chr7_1:40268149-40268168 | None:intergenic | 25.0% |
| ! | AAAAAATAACAGGTATCAGT+AGG | - | chr7_1:40268361-40268380 | None:intergenic | 25.0% |
| ! | CAACAAAAGCAAAAATGATT+TGG | - | chr7_1:40268887-40268906 | None:intergenic | 25.0% |
| ! | TATTCAACACAAAAAACTCT+GGG | - | chr7_1:40268977-40268996 | None:intergenic | 25.0% |
| ! | TCCAGAAGGAGAAAATTTTT+GGG | - | chr7_1:40266333-40266352 | None:intergenic | 30.0% |
| TTAGGCATCTGATCAATATA+AGG | - | chr7_1:40266491-40266510 | None:intergenic | 30.0% | |
| TATATCTGGTAGATAACTAC+AGG | - | chr7_1:40266664-40266683 | None:intergenic | 30.0% | |
| ! | GGACAATTTTGTAATTTTGG+GGG | + | chr7_1:40266741-40266760 | Msa1019110:intron | 30.0% |
| !! | TTCTGAGAAGGTTTCTTTTT+AGG | - | chr7_1:40266788-40266807 | None:intergenic | 30.0% |
| ! | CATTCTCTATTATTCTGAGA+AGG | - | chr7_1:40266800-40266819 | None:intergenic | 30.0% |
| CATCCACCGTAAAAATAATA+TGG | - | chr7_1:40266872-40266891 | None:intergenic | 30.0% | |
| AGCATCGTATATAGGAAAAA+TGG | - | chr7_1:40267064-40267083 | None:intergenic | 30.0% | |
| !! | TGAAGCTTTGAACTGAATTA+TGG | + | chr7_1:40267148-40267167 | Msa1019110:intron | 30.0% |
| !!! | AAATGAAGCTTGTTTTGTGA+TGG | + | chr7_1:40267247-40267266 | Msa1019110:intron | 30.0% |
| !!! | AATGAAGCTTGTTTTGTGAT+GGG | + | chr7_1:40267248-40267267 | Msa1019110:intron | 30.0% |
| !! | TGGGTTTTGTAATCGAAATT+AGG | + | chr7_1:40267267-40267286 | Msa1019110:intron | 30.0% |
| !! | GGGTTTTGTAATCGAAATTA+GGG | + | chr7_1:40267268-40267287 | Msa1019110:intron | 30.0% |
| TTTATTATGCTCATAGGGAT+AGG | + | chr7_1:40267395-40267414 | Msa1019110:intron | 30.0% | |
| TTATTATGCTCATAGGGATA+GGG | + | chr7_1:40267396-40267415 | Msa1019110:intron | 30.0% | |
| TAATCCAACACAACTTATTG+TGG | - | chr7_1:40267499-40267518 | None:intergenic | 30.0% | |
| CAATAAGTTGTGTTGGATTA+AGG | + | chr7_1:40267499-40267518 | Msa1019110:intron | 30.0% | |
| ATTGCTACACTGACAAAATA+TGG | - | chr7_1:40268288-40268307 | None:intergenic | 30.0% | |
| !! | ATTTGTTGTTCTGTATATGC+TGG | + | chr7_1:40268392-40268411 | Msa1019110:intron | 30.0% |
| ACAAACTTCTTGAATCCATT+AGG | - | chr7_1:40268590-40268609 | None:intergenic | 30.0% | |
| TATTTACATGAACAAACCTC+AGG | + | chr7_1:40268718-40268737 | Msa1019110:intron | 30.0% | |
| ! | TGTTGTTTATGGTATGAACA+TGG | + | chr7_1:40268902-40268921 | Msa1019110:three_prime_UTR | 30.0% |
| GTATTCAACACAAAAAACTC+TGG | - | chr7_1:40268978-40268997 | None:intergenic | 30.0% | |
| AGTCAGAAATCAAAAACAAG+CGG | - | chr7_1:40269115-40269134 | None:intergenic | 30.0% | |
| ! | TCCCAAAAATTTTCTCCTTC+TGG | + | chr7_1:40266329-40266348 | Msa1019110:CDS | 35.0% |
| ! | GTCCAGAAGGAGAAAATTTT+TGG | - | chr7_1:40266334-40266353 | None:intergenic | 35.0% |
| !! | AATATATTGTGTTGGTGTCG+GGG | - | chr7_1:40266468-40266487 | None:intergenic | 35.0% |
| ! | GAATATATTGTGTTGGTGTC+GGG | - | chr7_1:40266469-40266488 | None:intergenic | 35.0% |
| ! | GGAATATATTGTGTTGGTGT+CGG | - | chr7_1:40266470-40266489 | None:intergenic | 35.0% |
| AAAAGGATTGTGAATGTGGA+TGG | + | chr7_1:40266530-40266549 | Msa1019110:CDS | 35.0% | |
| CAGTTACGGTAGTTATAAAC+CGG | + | chr7_1:40266607-40266626 | Msa1019110:intron | 35.0% | |
| AACTACCAAATGTGTTAGTG+AGG | + | chr7_1:40266720-40266739 | Msa1019110:intron | 35.0% | |
| ATTGTCCTCACTAACACATT+TGG | - | chr7_1:40266728-40266747 | None:intergenic | 35.0% | |
| AGAATGTAGTCCATACATCT+GGG | + | chr7_1:40266814-40266833 | Msa1019110:intron | 35.0% | |
| ! | AAAATGGGCTTAATCTTACC+TGG | - | chr7_1:40266840-40266859 | None:intergenic | 35.0% |
| !! | AGAAGCTAGGGTTTTGTATT+GGG | - | chr7_1:40266931-40266950 | None:intergenic | 35.0% |
| AGAGATGTAAGAAGCAAATG+AGG | - | chr7_1:40266958-40266977 | None:intergenic | 35.0% | |
| !! | CAATCAGAAGCATCGTATAT+AGG | - | chr7_1:40267072-40267091 | None:intergenic | 35.0% |
| ! | TTTTTCTTCTTCTCTCGATC+TGG | + | chr7_1:40267113-40267132 | Msa1019110:intron | 35.0% |
| !!! | CATGGGTCGAATTGTTTTTT+TGG | + | chr7_1:40267224-40267243 | Msa1019110:intron | 35.0% |
| !! | TTTCTGAAATCGTATGGTGT+AGG | + | chr7_1:40267349-40267368 | Msa1019110:intron | 35.0% |
| TATCATACTCCTAAGGAGTA+AGG | + | chr7_1:40267472-40267491 | Msa1019110:intron | 35.0% | |
| !! | TATTTTGAGCATATGCAAGG+TGG | - | chr7_1:40267680-40267699 | None:intergenic | 35.0% |
| !!! | GCTTATTTTGAGCATATGCA+AGG | - | chr7_1:40267683-40267702 | None:intergenic | 35.0% |
| !!! | CATATTTTCCTGTCACTTTG+TGG | - | chr7_1:40267907-40267926 | None:intergenic | 35.0% |
| TGACAGGAAAATATGTGTGA+AGG | + | chr7_1:40267912-40267931 | Msa1019110:CDS | 35.0% | |
| AGGTACATGAGCGTAATAAA+TGG | - | chr7_1:40268129-40268148 | None:intergenic | 35.0% | |
| TTCTGACCTTATTACTGTTG+TGG | + | chr7_1:40268443-40268462 | Msa1019110:intron | 35.0% | |
| TGCATACCACAACAGTAATA+AGG | - | chr7_1:40268452-40268471 | None:intergenic | 35.0% | |
| CGAGTTAGGAGAAAATTCAA+AGG | + | chr7_1:40268506-40268525 | Msa1019110:CDS | 35.0% | |
| ! | GTTACTTTGATGCCTAACAT+TGG | + | chr7_1:40268530-40268549 | Msa1019110:CDS | 35.0% |
| TTGATGCCTAACATTGGATA+CGG | + | chr7_1:40268536-40268555 | Msa1019110:CDS | 35.0% | |
| TGAATCCATTAGGCAAATAG+TGG | - | chr7_1:40268580-40268599 | None:intergenic | 35.0% | |
| !!! | AACTTTTGATGATGCACAAC+AGG | + | chr7_1:40268633-40268652 | Msa1019110:CDS | 35.0% |
| TGTGTCAACCAGAAAAAGAA+AGG | + | chr7_1:40268767-40268786 | Msa1019110:CDS | 35.0% | |
| ! | AACGATCTCCTTTCTTTTTC+TGG | - | chr7_1:40268778-40268797 | None:intergenic | 35.0% |
| TTCTCAGGATTGTTGTCTTA+TGG | + | chr7_1:40268935-40268954 | Msa1019110:three_prime_UTR | 35.0% | |
| TAGATAGCATTATACCAGTC+AGG | - | chr7_1:40269139-40269158 | None:intergenic | 35.0% | |
| ATTGTGAATGTGGATGGTGA+CGG | + | chr7_1:40266536-40266555 | Msa1019110:CDS | 40.0% | |
| CAAGTTGTAGCAGAAAGTCT+TGG | + | chr7_1:40266572-40266591 | Msa1019110:intron | 40.0% | |
| GAGAATGTAGTCCATACATC+TGG | + | chr7_1:40266813-40266832 | Msa1019110:intron | 40.0% | |
| !! | CAGAAGCTAGGGTTTTGTAT+TGG | - | chr7_1:40266932-40266951 | None:intergenic | 40.0% |
| ! | TCTCGATCTGGTTTCGTAAA+AGG | + | chr7_1:40267125-40267144 | Msa1019110:intron | 40.0% |
| TATTGTGGTCCTTACTCCTT+AGG | - | chr7_1:40267484-40267503 | None:intergenic | 40.0% | |
| AGGACCACAATAAGTTGTGT+TGG | + | chr7_1:40267492-40267511 | Msa1019110:intron | 40.0% | |
| ! | TGTTGGATTAAGGGCTGTTT+TGG | + | chr7_1:40267509-40267528 | Msa1019110:intron | 40.0% |
| !! | GTTGGATTAAGGGCTGTTTT+GGG | + | chr7_1:40267510-40267529 | Msa1019110:intron | 40.0% |
| TGTGTCTTGTAGAGACAAGA+TGG | + | chr7_1:40267825-40267844 | Msa1019110:intron | 40.0% | |
| ACAATCTTCTTGGTGAGCAA+TGG | - | chr7_1:40267856-40267875 | None:intergenic | 40.0% | |
| ACGCTTCTTCACAATCTTCT+TGG | - | chr7_1:40267866-40267885 | None:intergenic | 40.0% | |
| TAACAGGTATCAGTAGGAGT+AGG | - | chr7_1:40268355-40268374 | None:intergenic | 40.0% | |
| ACTCGTGAATCAATACCCTT+TGG | - | chr7_1:40268491-40268510 | None:intergenic | 40.0% | |
| !! | AGGGTATTGATTCACGAGTT+AGG | + | chr7_1:40268492-40268511 | Msa1019110:CDS | 40.0% |
| ATCCATTAGGCAAATAGTGG+CGG | - | chr7_1:40268577-40268596 | None:intergenic | 40.0% | |
| TGTGCATCATCAAAAGTTCC+AGG | - | chr7_1:40268631-40268650 | None:intergenic | 40.0% | |
| TCTCCTATCTTCCCCTCTAA+AGG | + | chr7_1:40266362-40266381 | Msa1019110:CDS | 45.0% | |
| ! | AAGCCTTTAGAGGGGAAGAT+AGG | - | chr7_1:40266368-40266387 | None:intergenic | 45.0% |
| TGCGTCAACAAGCCTTTAGA+GGG | - | chr7_1:40266377-40266396 | None:intergenic | 45.0% | |
| GTAGCAGAAAGTCTTGGTCT+TGG | + | chr7_1:40266578-40266597 | Msa1019110:intron | 45.0% | |
| !! | GGTCTTGGTTCTGACAGTTA+CGG | + | chr7_1:40266593-40266612 | Msa1019110:intron | 45.0% |
| TGGGGGCCTACAAAGATATA+AGG | + | chr7_1:40266758-40266777 | Msa1019110:intron | 45.0% | |
| GGGGGCCTACAAAGATATAA+GGG | + | chr7_1:40266759-40266778 | Msa1019110:intron | 45.0% | |
| GGCCTACAAAGATATAAGGG+AGG | + | chr7_1:40266762-40266781 | Msa1019110:intron | 45.0% | |
| GGCCTCCCTTATATCTTTGT+AGG | - | chr7_1:40266767-40266786 | None:intergenic | 45.0% | |
| AAATGAGGCAGCAGAAGCTA+GGG | - | chr7_1:40266943-40266962 | None:intergenic | 45.0% | |
| GGATAGGGACCCTAATAATG+TGG | + | chr7_1:40267411-40267430 | Msa1019110:intron | 45.0% | |
| !! | GATTAAGGGCTGTTTTGGGT+TGG | + | chr7_1:40267514-40267533 | Msa1019110:intron | 45.0% |
| CTTCTTGGTGAGCAATGGAA+CGG | - | chr7_1:40267851-40267870 | None:intergenic | 45.0% | |
| ! | TTGTGAAGAAGCGTGTCAAG+AGG | + | chr7_1:40267872-40267891 | Msa1019110:CDS | 45.0% |
| AGGTATCAGTAGGAGTAGGT+AGG | - | chr7_1:40268351-40268370 | None:intergenic | 45.0% | |
| TCTGAGCCGTATCCAATGTT+AGG | - | chr7_1:40268545-40268564 | None:intergenic | 45.0% | |
| TCCATTAGGCAAATAGTGGC+GGG | - | chr7_1:40268576-40268595 | None:intergenic | 45.0% | |
| TCATCAAAAGTTCCAGGTCC+TGG | - | chr7_1:40268625-40268644 | None:intergenic | 45.0% | |
| GATGATGCACAACAGGTAAC+TGG | + | chr7_1:40268640-40268659 | Msa1019110:intron | 45.0% | |
| AAAGGAGATCGTTGAACGTG+CGG | + | chr7_1:40268785-40268804 | Msa1019110:CDS | 45.0% | |
| TGTTGTTGTCACCAACAAGC+TGG | + | chr7_1:40268818-40268837 | Msa1019110:CDS | 45.0% | |
| CATGGCAGACAATTGTTCTC+AGG | + | chr7_1:40268920-40268939 | Msa1019110:three_prime_UTR | 45.0% | |
| TTGATTTCTGACTGCCTGAC+TGG | + | chr7_1:40269122-40269141 | Msa1019110:three_prime_UTR | 45.0% | |
| !! | AAAAAATTAATAAACAAAAA+TGG | - | chr7_1:40267098-40267117 | None:intergenic | 5.0% |
| ! | GCGTCAACAAGCCTTTAGAG+GGG | - | chr7_1:40266376-40266395 | None:intergenic | 50.0% |
| GTGCGTCAACAAGCCTTTAG+AGG | - | chr7_1:40266378-40266397 | None:intergenic | 50.0% | |
| TCTTACCTGGCCCAGATGTA+TGG | - | chr7_1:40266827-40266846 | None:intergenic | 50.0% | |
| CAAATGAGGCAGCAGAAGCT+AGG | - | chr7_1:40266944-40266963 | None:intergenic | 50.0% | |
| ! | TCTGAAGCAGCGATTCAAGC+AGG | + | chr7_1:40266975-40266994 | Msa1019110:CDS | 50.0% |
| AGCGTGTCAAGAGGTTCATC+AGG | + | chr7_1:40267881-40267900 | Msa1019110:CDS | 50.0% | |
| TCATCAGGCCACAAAGTGAC+AGG | + | chr7_1:40267896-40267915 | Msa1019110:CDS | 50.0% | |
| GTTGTGGTATGCAGCAAAGC+TGG | + | chr7_1:40268459-40268478 | Msa1019110:intron | 50.0% | |
| ACCCGCCACTATTTGCCTAA+TGG | + | chr7_1:40268572-40268591 | Msa1019110:CDS | 50.0% | |
| GTTTGTCGTGCACAATGTCC+AGG | + | chr7_1:40268604-40268623 | Msa1019110:CDS | 50.0% | |
| TCTCAGCACAGTATGTCCTG+AGG | - | chr7_1:40268737-40268756 | None:intergenic | 50.0% | |
| GGAGATGATGAGCGTCCAGA+AGG | - | chr7_1:40266347-40266366 | None:intergenic | 55.0% | |
| !! | GTGGATGGTGACGGTTACTG+TGG | + | chr7_1:40266545-40266564 | Msa1019110:intron | 55.0% |
| GTAGTCCATACATCTGGGCC+AGG | + | chr7_1:40266819-40266838 | Msa1019110:intron | 55.0% | |
| CGTTGAACGTGCGGCACAAT+TGG | + | chr7_1:40268794-40268813 | Msa1019110:CDS | 55.0% | |
| TTGTCACCAACAAGCTGGCC+AGG | + | chr7_1:40268823-40268842 | Msa1019110:CDS | 55.0% | |
| GTCTTCTTGACTGCGCAACC+TGG | - | chr7_1:40268844-40268863 | None:intergenic | 55.0% | |
| !! | GTTGGTGTCGGGGTCGTAGA+GGG | - | chr7_1:40266458-40266477 | None:intergenic | 60.0% |
| !! | TGTTGGTGTCGGGGTCGTAG+AGG | - | chr7_1:40266459-40266478 | None:intergenic | 60.0% |
| GTATGCAGCAAAGCTGGCGC+AGG | + | chr7_1:40268465-40268484 | Msa1019110:intron | 60.0% | |
| CAAAGCTGGCGCAGGCCAAA+GGG | + | chr7_1:40268473-40268492 | Msa1019110:CDS | 60.0% | |
| CGTGCACAATGTCCAGGACC+TGG | + | chr7_1:40268610-40268629 | Msa1019110:CDS | 60.0% | |
| GCAAAGCTGGCGCAGGCCAA+AGG | + | chr7_1:40268472-40268491 | Msa1019110:intron | 65.0% | |
| GCGCAACCTGGCCAGCTTGT+TGG | - | chr7_1:40268832-40268851 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 40266317 | 40269174 | 40266317 | ID=Msa1019110;Name=Msa1019110 |
| chr7_1 | mRNA | 40266317 | 40269174 | 40266317 | ID=Msa1019110-mRNA-1;Parent=Msa1019110;Name=Msa1019110-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.5|0.4|1|0.5|0.4|5|305|247 |
| chr7_1 | exon | 40266317 | 40266557 | 40266317 | ID=Msa1019110-mRNA-1:exon:7770;Parent=Msa1019110-mRNA-1 |
| chr7_1 | exon | 40266901 | 40266996 | 40266901 | ID=Msa1019110-mRNA-1:exon:7771;Parent=Msa1019110-mRNA-1 |
| chr7_1 | exon | 40267839 | 40267933 | 40267839 | ID=Msa1019110-mRNA-1:exon:7772;Parent=Msa1019110-mRNA-1 |
| chr7_1 | exon | 40268473 | 40268654 | 40268473 | ID=Msa1019110-mRNA-1:exon:7773;Parent=Msa1019110-mRNA-1 |
| chr7_1 | exon | 40268740 | 40269174 | 40268740 | ID=Msa1019110-mRNA-1:exon:7774;Parent=Msa1019110-mRNA-1 |
| chr7_1 | CDS | 40266317 | 40266557 | 40266317 | ID=Msa1019110-mRNA-1:cds;Parent=Msa1019110-mRNA-1 |
| chr7_1 | CDS | 40266901 | 40266996 | 40266901 | ID=Msa1019110-mRNA-1:cds;Parent=Msa1019110-mRNA-1 |
| chr7_1 | CDS | 40267839 | 40267933 | 40267839 | ID=Msa1019110-mRNA-1:cds;Parent=Msa1019110-mRNA-1 |
| chr7_1 | CDS | 40268473 | 40268654 | 40268473 | ID=Msa1019110-mRNA-1:cds;Parent=Msa1019110-mRNA-1 |
| chr7_1 | CDS | 40268740 | 40268869 | 40268740 | ID=Msa1019110-mRNA-1:cds;Parent=Msa1019110-mRNA-1 |
| chr7_1 | three_prime_UTR | 40268870 | 40269174 | 40268870 | ID=Msa1019110-mRNA-1:three_prime_utr;Parent=Msa1019110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
