Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605890 | XP_003606958.1 | 99.065 | 107 | 1 | 0 | 54 | 160 | 1 | 107 | 2.35e-69 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605890 | sp|Q9SIK2|RS252_ARATH | 91.667 | 108 | 8 | 1 | 54 | 160 | 1 | 108 | 1.42e-51 | 162 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605890 | B7FH10 | 99.065 | 107 | 1 | 0 | 54 | 160 | 1 | 107 | 1.12e-69 | 215 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0605890 | 0.850911 | 1.250419e-60 | -8.615850e-47 |
| Msa0002430 | Msa0605890 | 0.821344 | 4.245458e-53 | -8.615850e-47 |
| Msa0003330 | Msa0605890 | 0.830441 | 2.932470e-55 | -8.615850e-47 |
| Msa0027590 | Msa0605890 | 0.882941 | 6.825775e-71 | -8.615850e-47 |
| Msa0040220 | Msa0605890 | 0.822943 | 1.807246e-53 | -8.615850e-47 |
| Msa0071760 | Msa0605890 | 0.800562 | 1.359441e-48 | -8.615850e-47 |
| Msa0072570 | Msa0605890 | 0.818304 | 2.101545e-52 | -8.615850e-47 |
| Msa0075350 | Msa0605890 | 0.842194 | 3.001196e-58 | -8.615850e-47 |
| Msa0076630 | Msa0605890 | 0.829390 | 5.287102e-55 | -8.615850e-47 |
| Msa0087910 | Msa0605890 | 0.864879 | 8.847865e-65 | -8.615850e-47 |
| Msa0114600 | Msa0605890 | 0.887498 | 1.353940e-72 | -8.615850e-47 |
| Msa0602900 | Msa0605890 | 0.907820 | 3.349617e-81 | -8.615850e-47 |
| Msa0605600 | Msa0605890 | 0.816200 | 6.250675e-52 | -8.615850e-47 |
| Msa0605890 | Msa0609120 | 0.843384 | 1.448477e-58 | -8.615850e-47 |
| Msa0605890 | Msa0619230 | 0.881103 | 3.168023e-70 | -8.615850e-47 |
| Msa0605890 | Msa0622230 | 0.845558 | 3.768596e-59 | -8.615850e-47 |
| Msa0605890 | Msa0643960 | 0.912805 | 1.277696e-83 | -8.615850e-47 |
| Msa0605890 | Msa0648670 | 0.800651 | 1.304318e-48 | -8.615850e-47 |
| Msa0605890 | Msa0649890 | 0.845067 | 5.117875e-59 | -8.615850e-47 |
| Msa0605890 | Msa0653060 | 0.805474 | 1.311654e-49 | -8.615850e-47 |
| Msa0605890 | Msa0656450 | 0.820003 | 8.626334e-53 | -8.615850e-47 |
| Msa0605890 | Msa0663400 | 0.833823 | 4.272704e-56 | -8.615850e-47 |
| Msa0605890 | Msa0686550 | 0.861064 | 1.333447e-63 | -8.615850e-47 |
| Msa0605890 | Msa0691760 | 0.828711 | 7.721958e-55 | -8.615850e-47 |
| Msa0605890 | Msa0694400 | 0.892534 | 1.452417e-74 | -8.615850e-47 |
| Msa0605890 | Msa0704860 | 0.894505 | 2.314578e-75 | -8.615850e-47 |
| Msa0605890 | Msa0705800 | 0.807976 | 3.885685e-50 | -8.615850e-47 |
| Msa0605890 | Msa0708630 | 0.860265 | 2.330847e-63 | -8.615850e-47 |
| Msa0605890 | Msa0741510 | 0.830821 | 2.366492e-55 | -8.615850e-47 |
| Msa0605890 | Msa0748350 | 0.859457 | 4.081505e-63 | -8.615850e-47 |
| Msa0605890 | Msa0749000 | 0.838740 | 2.402472e-57 | -8.615850e-47 |
| Msa0605890 | Msa0788380 | 0.836570 | 8.659072e-57 | -8.615850e-47 |
| Msa0605890 | Msa0790450 | 0.849443 | 3.222703e-60 | -8.615850e-47 |
| Msa0605890 | Msa0796490 | 0.849761 | 2.628173e-60 | -8.615850e-47 |
| Msa0605890 | Msa0834220 | 0.816613 | 5.052803e-52 | -8.615850e-47 |
| Msa0605890 | Msa0835190 | 0.846314 | 2.348523e-59 | -8.615850e-47 |
| Msa0605890 | Msa0838070 | 0.804333 | 2.271465e-49 | -8.615850e-47 |
| Msa0605890 | Msa0902220 | 0.853102 | 2.982993e-61 | -8.615850e-47 |
| Msa0605890 | Msa0902730 | 0.860435 | 2.070508e-63 | -8.615850e-47 |
| Msa0605890 | Msa0927910 | 0.860471 | 2.018453e-63 | -8.615850e-47 |
| Msa0605890 | Msa0929680 | 0.802215 | 6.237237e-49 | -8.615850e-47 |
| Msa0605890 | Msa0929700 | 0.903183 | 4.512764e-79 | -8.615850e-47 |
| Msa0605890 | Msa0930550 | 0.803779 | 2.961474e-49 | -8.615850e-47 |
| Msa0605890 | Msa0930790 | 0.820987 | 5.129448e-53 | -8.615850e-47 |
| Msa0605890 | Msa0930890 | 0.886015 | 4.936549e-72 | -8.615850e-47 |
| Msa0605890 | Msa0978470 | 0.823055 | 1.701706e-53 | -8.615850e-47 |
| Msa0605890 | Msa1019110 | 0.842819 | 2.049102e-58 | -8.615850e-47 |
| Msa0605890 | Msa1037290 | 0.842604 | 2.335866e-58 | -8.615850e-47 |
| Msa0605890 | Msa1040160 | 0.838840 | 2.264282e-57 | -8.615850e-47 |
| Msa0605890 | Msa1041680 | 0.847240 | 1.310206e-59 | -8.615850e-47 |
| Msa0605890 | Msa1047020 | 0.829014 | 6.524780e-55 | -8.615850e-47 |
| Msa0605890 | Msa1050100 | 0.803201 | 3.902730e-49 | -8.615850e-47 |
| Msa0605890 | Msa1078980 | 0.810365 | 1.195344e-50 | -8.615850e-47 |
| Msa0605890 | Msa1079910 | 0.839618 | 1.422531e-57 | -8.615850e-47 |
| Msa0605890 | Msa1083370 | 0.833412 | 5.414359e-56 | -8.615850e-47 |
| Msa0605890 | Msa1085850 | 0.820745 | 5.830399e-53 | -8.615850e-47 |
| Msa0605890 | Msa1093500 | 0.856443 | 3.205601e-62 | -8.615850e-47 |
| Msa0605890 | Msa1116940 | 0.827495 | 1.515993e-54 | -8.615850e-47 |
| Msa0605890 | Msa1124850 | 0.816521 | 5.298205e-52 | -8.615850e-47 |
| Msa0605890 | Msa1126520 | 0.804321 | 2.285228e-49 | -8.615850e-47 |
| Msa0605890 | Msa1126690 | 0.838567 | 2.664149e-57 | -8.615850e-47 |
| Msa0605890 | Msa1130680 | 0.800428 | 1.448178e-48 | -8.615850e-47 |
| Msa0605890 | Msa1131030 | 0.816069 | 6.687284e-52 | -8.615850e-47 |
| Msa0605890 | Msa1136880 | 0.808908 | 2.458160e-50 | -8.615850e-47 |
| Msa0605890 | Msa1147670 | 0.813778 | 2.154596e-51 | -8.615850e-47 |
| Msa0605890 | Msa1156830 | 0.800724 | 1.260322e-48 | -8.615850e-47 |
| Msa0605890 | Msa1164150 | 0.871977 | 4.526946e-67 | -8.615850e-47 |
| Msa0605890 | Msa1165640 | 0.843439 | 1.399962e-58 | -8.615850e-47 |
| Msa0605890 | Msa1166570 | 0.844249 | 8.496582e-59 | -8.615850e-47 |
| Msa0605890 | Msa1169180 | 0.814414 | 1.559575e-51 | -8.615850e-47 |
| Msa0605890 | Msa1180000 | 0.849230 | 3.694041e-60 | -8.615850e-47 |
| Msa0605890 | Msa1186030 | 0.858923 | 5.901019e-63 | -8.615850e-47 |
| Msa0605890 | Msa1206240 | 0.829603 | 4.693395e-55 | -8.615850e-47 |
| Msa0605890 | Msa1208330 | 0.853540 | 2.233346e-61 | -8.615850e-47 |
| Msa0605890 | Msa1219760 | 0.810764 | 9.800099e-51 | -8.615850e-47 |
| Msa0605890 | Msa1235950 | 0.864152 | 1.492861e-64 | -8.615850e-47 |
| Msa0605890 | Msa1235980 | 0.867665 | 1.157456e-65 | -8.615850e-47 |
| Msa0605890 | Msa1237040 | 0.858626 | 7.242114e-63 | -8.615850e-47 |
| Msa0605890 | Msa1240270 | 0.830341 | 3.101392e-55 | -8.615850e-47 |
| Msa0605890 | Msa1255850 | 0.812448 | 4.218264e-51 | -8.615850e-47 |
| Msa0605890 | Msa1258540 | 0.841626 | 4.239986e-58 | -8.615850e-47 |
| Msa0605890 | Msa1270640 | 0.841228 | 5.397107e-58 | -8.615850e-47 |
| Msa0605890 | Msa1270710 | 0.838854 | 2.245674e-57 | -8.615850e-47 |
| Msa0605890 | Msa1278130 | 0.829869 | 4.043893e-55 | -8.615850e-47 |
| Msa0605890 | Msa1284060 | 0.801219 | 9.984916e-49 | -8.615850e-47 |
| Msa0605890 | Msa1296090 | 0.807446 | 5.035659e-50 | -8.615850e-47 |
| Msa0605890 | Msa1311400 | 0.840458 | 8.589597e-58 | -8.615850e-47 |
| Msa0605890 | Msa1316100 | 0.823820 | 1.127612e-53 | -8.615850e-47 |
| Msa0605890 | Msa1317390 | 0.845209 | 4.684114e-59 | -8.615850e-47 |
| Msa0605890 | Msa1330730 | 0.868670 | 5.494047e-66 | -8.615850e-47 |
| Msa0605890 | Msa1341780 | 0.863899 | 1.789987e-64 | -8.615850e-47 |
| Msa0605890 | Msa1351020 | 0.909189 | 7.494209e-82 | -8.615850e-47 |
| Msa0605890 | Msa1351910 | 0.876135 | 1.776159e-68 | -8.615850e-47 |
| Msa0605890 | Msa1353300 | 0.831933 | 1.260304e-55 | -8.615850e-47 |
| Msa0605890 | Msa1358710 | 0.816071 | 6.678627e-52 | -8.615850e-47 |
| Msa0605890 | Msa1363910 | 0.821938 | 3.093925e-53 | -8.615850e-47 |
| Msa0605890 | Msa1367540 | 0.831368 | 1.737257e-55 | -8.615850e-47 |
| Msa0605890 | Msa1368920 | 0.844359 | 7.939729e-59 | -8.615850e-47 |
| Msa0605890 | Msa1371410 | 0.813657 | 2.290800e-51 | -8.615850e-47 |
| Msa0605890 | Msa1385480 | 0.889747 | 1.835835e-73 | -8.615850e-47 |
| Msa0605890 | Msa1390760 | 0.880208 | 6.632390e-70 | -8.615850e-47 |
| Msa0605890 | Msa1397660 | 0.813569 | 2.395445e-51 | -8.615850e-47 |
| Msa0605890 | Msa1407550 | 0.865019 | 7.998032e-65 | -8.615850e-47 |
| Msa0605890 | Msa1413570 | 0.826627 | 2.445487e-54 | -8.615850e-47 |
| Msa0605890 | Msa1415620 | 0.812303 | 4.537030e-51 | -8.615850e-47 |
| Msa0605890 | Msa1424570 | 0.839701 | 1.353440e-57 | -8.615850e-47 |
| Msa0605890 | Msa1425070 | 0.824884 | 6.337449e-54 | -8.615850e-47 |
| Msa0605890 | Msa1432310 | 0.889373 | 2.567065e-73 | -8.615850e-47 |
| Msa0605890 | Msa1441220 | -0.841049 | 6.013940e-58 | -8.615850e-47 |
| Msa0605890 | Msa1446410 | 0.861171 | 1.237073e-63 | -8.615850e-47 |
| Msa0605890 | Msa1449160 | 0.815791 | 7.715450e-52 | -8.615850e-47 |
| Msa0605890 | Msa1450560 | 0.852160 | 5.539208e-61 | -8.615850e-47 |
| Msa0605890 | Msa1462580 | 0.802905 | 4.494478e-49 | -8.615850e-47 |
| Msa0605890 | Msa1463570 | 0.884771 | 1.442272e-71 | -8.615850e-47 |
| Msa0605890 | Msa1465700 | 0.863675 | 2.101491e-64 | -8.615850e-47 |
| Msa0123290 | Msa0605890 | 0.833369 | 5.549121e-56 | -8.615850e-47 |
| Msa0128330 | Msa0605890 | 0.889918 | 1.573927e-73 | -8.615850e-47 |
| Msa0132460 | Msa0605890 | 0.860724 | 1.691558e-63 | -8.615850e-47 |
| Msa0134580 | Msa0605890 | 0.876985 | 9.029603e-69 | -8.615850e-47 |
| Msa0146610 | Msa0605890 | 0.838026 | 3.671135e-57 | -8.615850e-47 |
| Msa0167860 | Msa0605890 | 0.919634 | 3.522327e-87 | -8.615850e-47 |
| Msa0168320 | Msa0605890 | 0.830502 | 2.832298e-55 | -8.615850e-47 |
| Msa0174580 | Msa0605890 | 0.886474 | 3.315198e-72 | -8.615850e-47 |
| Msa0182050 | Msa0605890 | 0.860343 | 2.207493e-63 | -8.615850e-47 |
| Msa0182100 | Msa0605890 | 0.854487 | 1.191051e-61 | -8.615850e-47 |
| Msa0183840 | Msa0605890 | 0.838048 | 3.624869e-57 | -8.615850e-47 |
| Msa0186740 | Msa0605890 | 0.816901 | 4.353582e-52 | -8.615850e-47 |
| Msa0187810 | Msa0605890 | 0.865955 | 4.056559e-65 | -8.615850e-47 |
| Msa0191450 | Msa0605890 | 0.876212 | 1.671163e-68 | -8.615850e-47 |
| Msa0191550 | Msa0605890 | 0.898295 | 6.102467e-77 | -8.615850e-47 |
| Msa0192300 | Msa0605890 | 0.844999 | 5.338954e-59 | -8.615850e-47 |
| Msa0192750 | Msa0605890 | 0.836913 | 7.081325e-57 | -8.615850e-47 |
| Msa0194940 | Msa0605890 | 0.885695 | 6.510951e-72 | -8.615850e-47 |
| Msa0195030 | Msa0605890 | 0.817357 | 3.438423e-52 | -8.615850e-47 |
| Msa0219090 | Msa0605890 | 0.804410 | 2.189265e-49 | -8.615850e-47 |
| Msa0222730 | Msa0605890 | 0.806233 | 9.088212e-50 | -8.615850e-47 |
| Msa0225350 | Msa0605890 | 0.825486 | 4.566721e-54 | -8.615850e-47 |
| Msa0233550 | Msa0605890 | 0.821920 | 3.123151e-53 | -8.615850e-47 |
| Msa0235050 | Msa0605890 | 0.908134 | 2.381982e-81 | -8.615850e-47 |
| Msa0237180 | Msa0605890 | 0.813409 | 2.597500e-51 | -8.615850e-47 |
| Msa0369410 | Msa0605890 | 0.832176 | 1.097489e-55 | -8.615850e-47 |
| Msa0371490 | Msa0605890 | 0.845031 | 5.231354e-59 | -8.615850e-47 |
| Msa0376850 | Msa0605890 | 0.859268 | 4.650903e-63 | -8.615850e-47 |
| Msa0377370 | Msa0605890 | 0.864629 | 1.060082e-64 | -8.615850e-47 |
| Msa0377520 | Msa0605890 | 0.830977 | 2.166704e-55 | -8.615850e-47 |
| Msa0419710 | Msa0605890 | 0.844588 | 6.888869e-59 | -8.615850e-47 |
| Msa0426090 | Msa0605890 | 0.876413 | 1.424046e-68 | -8.615850e-47 |
| Msa0426250 | Msa0605890 | 0.892861 | 1.074403e-74 | -8.615850e-47 |
| Msa0432750 | Msa0605890 | 0.806245 | 9.032868e-50 | -8.615850e-47 |
| Msa0450150 | Msa0605890 | 0.865369 | 6.207706e-65 | -8.615850e-47 |
| Msa0468440 | Msa0605890 | 0.819833 | 9.434298e-53 | -8.615850e-47 |
| Msa0471880 | Msa0605890 | 0.800701 | 1.273817e-48 | -8.615850e-47 |
| Msa0472480 | Msa0605890 | 0.867112 | 1.739410e-65 | -8.615850e-47 |
| Msa0479980 | Msa0605890 | 0.809821 | 1.565743e-50 | -8.615850e-47 |
| Msa0481520 | Msa0605890 | 0.842975 | 1.862163e-58 | -8.615850e-47 |
| Msa0481850 | Msa0605890 | 0.801426 | 9.053095e-49 | -8.615850e-47 |
| Msa0482560 | Msa0605890 | 0.804521 | 2.075835e-49 | -8.615850e-47 |
| Msa0239420 | Msa0605890 | 0.837327 | 5.548560e-57 | -8.615850e-47 |
| Msa0270160 | Msa0605890 | 0.819648 | 1.039926e-52 | -8.615850e-47 |
| Msa0274940 | Msa0605890 | 0.804255 | 2.358135e-49 | -8.615850e-47 |
| Msa0277600 | Msa0605890 | 0.920843 | 7.650934e-88 | -8.615850e-47 |
| Msa0281330 | Msa0605890 | 0.911207 | 7.894852e-83 | -8.615850e-47 |
| Msa0281370 | Msa0605890 | 0.901755 | 1.943884e-78 | -8.615850e-47 |
| Msa0301250 | Msa0605890 | 0.845301 | 4.423434e-59 | -8.615850e-47 |
| Msa0312210 | Msa0605890 | 0.851674 | 7.610750e-61 | -8.615850e-47 |
| Msa0313060 | Msa0605890 | 0.876518 | 1.310466e-68 | -8.615850e-47 |
| Msa0315430 | Msa0605890 | 0.893966 | 3.838558e-75 | -8.615850e-47 |
| Msa0315660 | Msa0605890 | 0.819181 | 1.329005e-52 | -8.615850e-47 |
| Msa0340560 | Msa0605890 | 0.836163 | 1.099103e-56 | -8.615850e-47 |
| Msa0511760 | Msa0605890 | 0.807051 | 6.104359e-50 | -8.615850e-47 |
| Msa0516830 | Msa0605890 | 0.859438 | 4.135193e-63 | -8.615850e-47 |
| Msa0517480 | Msa0605890 | 0.837670 | 4.532882e-57 | -8.615850e-47 |
| Msa0529900 | Msa0605890 | 0.835608 | 1.519722e-56 | -8.615850e-47 |
| Msa0540480 | Msa0605890 | 0.804170 | 2.456953e-49 | -8.615850e-47 |
| Msa0547920 | Msa0605890 | 0.919902 | 2.515385e-87 | -8.615850e-47 |
| Msa0550420 | Msa0605890 | 0.883879 | 3.086196e-71 | -8.615850e-47 |
| Msa0550490 | Msa0605890 | 0.839515 | 1.513244e-57 | -8.615850e-47 |
| Msa0568380 | Msa0605890 | 0.817424 | 3.321469e-52 | -8.615850e-47 |
| Msa0573550 | Msa0605890 | 0.910900 | 1.116107e-82 | -8.615850e-47 |
| Msa0574780 | Msa0605890 | 0.881677 | 1.968258e-70 | -8.615850e-47 |
| Msa0579830 | Msa0605890 | 0.852733 | 3.803346e-61 | -8.615850e-47 |
| Msa0582070 | Msa0605890 | 0.814429 | 1.547621e-51 | -8.615850e-47 |
| Msa0585570 | Msa0605890 | 0.826031 | 3.390154e-54 | -8.615850e-47 |
| Msa0597240 | Msa0605890 | 0.876957 | 9.231645e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605890 | MtrunA17_Chr4g0035271 | 99.065 | 107 | 1 | 0 | 54 | 160 | 1 | 107 | 2.16e-73 | 215 |
| Msa0605890 | MtrunA17_Chr2g0321571 | 98.131 | 107 | 2 | 0 | 54 | 160 | 1 | 107 | 6.26e-73 | 214 |
| Msa0605890 | MtrunA17_Chr6g0455051 | 75.556 | 45 | 2 | 1 | 79 | 123 | 6 | 41 | 2.44e-16 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605890 | AT2G21580.1 | 91.667 | 108 | 8 | 1 | 54 | 160 | 1 | 108 | 1.44e-52 | 162 |
| Msa0605890 | AT4G39200.1 | 88.889 | 108 | 11 | 1 | 54 | 160 | 1 | 108 | 4.15e-51 | 159 |
| Msa0605890 | AT2G21580.2 | 87.963 | 108 | 11 | 2 | 54 | 160 | 1 | 107 | 6.44e-51 | 159 |
| Msa0605890 | AT4G39200.2 | 87.037 | 108 | 12 | 2 | 54 | 160 | 1 | 107 | 1.91e-49 | 155 |
| Msa0605890 | AT4G34555.1 | 88.785 | 107 | 11 | 1 | 54 | 159 | 1 | 107 | 7.50e-49 | 153 |
| Msa0605890 | AT2G16360.1 | 86.667 | 105 | 13 | 1 | 55 | 158 | 2 | 106 | 3.90e-46 | 146 |
Find 67 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGGTCTATGCAGATTAA+TGG | 0.196241 | 4_2:+51967931 | Msa0605890:intron |
| AGGAGTGATGAGCTTGTATT+TGG | 0.258319 | 4_2:-51966680 | None:intergenic |
| CTGTTTGCCACCGCCAGATT+TGG | 0.259942 | 4_2:-51965761 | None:intergenic |
| GGAGGAGGAGCTGCCTTCTT+GGG | 0.308666 | 4_2:-51965724 | None:intergenic |
| TCCTCCAAGCCAGCCAAATC+TGG | 0.317280 | 4_2:+51965748 | Msa0605890:CDS |
| ACCGCCAGATTTGGCTGGCT+TGG | 0.348344 | 4_2:-51965752 | None:intergenic |
| GCAATTCAACTAAATAAAAT+AGG | 0.360931 | 4_2:-51968233 | None:intergenic |
| AGGAGGAGGAGCTGCCTTCT+TGG | 0.379715 | 4_2:-51965725 | None:intergenic |
| GAAGAAAGAAGTGGAAAGAA+TGG | 0.381324 | 4_2:+51964654 | Msa0605890:CDS |
| TGATGGCTAAAGGTTTAATC+AGG | 0.382324 | 4_2:+51967983 | Msa0605890:CDS |
| CTGTCCTCTCTGATCGTTTG+AGG | 0.389732 | 4_2:+51966704 | Msa0605890:CDS |
| TGGAAAACTCCAGGAGATAA+AGG | 0.390748 | 4_2:+51964674 | Msa0605890:CDS |
| CCCTCACTTTCCCTCGTCTT+CGG | 0.393052 | 4_2:-51964618 | None:intergenic |
| GAGGGCTATAAGAGACTTGA+TGG | 0.404889 | 4_2:+51967966 | Msa0605890:CDS |
| CACCTAGGTGTTTGTAGCCC+TGG | 0.406263 | 4_2:-51968040 | None:intergenic |
| TTGCCACCGCCAGATTTGGC+TGG | 0.423311 | 4_2:-51965757 | None:intergenic |
| CAACATGGTGCTGTTTGATC+AGG | 0.424061 | 4_2:+51966627 | Msa0605890:CDS |
| AATCCATACCAATTGGCAAT+TGG | 0.425398 | 4_2:+51968280 | Msa0605890:three_prime_UTR |
| AAGTGAGGGCTTGAAAATAA+AGG | 0.437693 | 4_2:+51964632 | Msa0605890:CDS |
| AAACCAATTGCCAATTGGTA+TGG | 0.451391 | 4_2:-51968283 | None:intergenic |
| TGTCCTCTCTGATCGTTTGA+GGG | 0.452861 | 4_2:+51966705 | Msa0605890:CDS |
| GCCAGATTTGGCTGGCTTGG+AGG | 0.465517 | 4_2:-51965749 | None:intergenic |
| ATAAGAGACTTGATGGCTAA+AGG | 0.477465 | 4_2:+51967973 | Msa0605890:CDS |
| ATCAGAAACCAATTGCCAAT+TGG | 0.479027 | 4_2:-51968288 | None:intergenic |
| GTGGAGCAAGGGAAAGCAAA+AGG | 0.500179 | 4_2:+51966594 | Msa0605890:CDS |
| GCTGGCTTGGAGGAAGGAGG+AGG | 0.501135 | 4_2:-51965739 | None:intergenic |
| TTCAGTTAAGAGCTTGTCAT+AGG | 0.503535 | 4_2:-51966653 | None:intergenic |
| GGTTCATGATTTGGTCAGGT+GGG | 0.509474 | 4_2:+51968330 | Msa0605890:three_prime_UTR |
| TGGTTCATGATTTGGTCAGG+TGG | 0.515484 | 4_2:+51968329 | Msa0605890:three_prime_UTR |
| CCATCAAAACCTTTATCTCC+TGG | 0.519205 | 4_2:-51964683 | None:intergenic |
| GGCTAAAGGTTTAATCAGGT+TGG | 0.524410 | 4_2:+51967987 | Msa0605890:CDS |
| TAATGGATCACTTGCAAGGA+GGG | 0.537201 | 4_2:+51967948 | Msa0605890:CDS |
| GATTTGGCTGGCTTGGAGGA+AGG | 0.542704 | 4_2:-51965745 | None:intergenic |
| ATACCTCGGAGCAGAAATCA+TGG | 0.547670 | 4_2:+51965617 | Msa0605890:CDS |
| TCTCAGACCTTCTCATACCT+CGG | 0.548806 | 4_2:+51965603 | Msa0605890:CDS |
| AACTAATGAGTCCGAAGACG+AGG | 0.550184 | 4_2:+51964607 | None:intergenic |
| ATAAACTCCTGTGTGAATTG+TGG | 0.553497 | 4_2:+51968432 | Msa0605890:three_prime_UTR |
| TGGAAAGAATGGAAAACTCC+AGG | 0.556018 | 4_2:+51964665 | Msa0605890:CDS |
| AAAATAAAGGAAGAAAGAAG+TGG | 0.557246 | 4_2:+51964645 | Msa0605890:CDS |
| CAAGTCAGCAGATTTACACC+AGG | 0.557612 | 4_2:+51968022 | Msa0605890:CDS |
| TCCGAAGACGAGGGAAAGTG+AGG | 0.562690 | 4_2:+51964617 | Msa0605890:CDS |
| TGTTTAACAGAAGTGGAGCA+AGG | 0.569376 | 4_2:+51966582 | Msa0605890:intron |
| AAGCCAGCCAAATCTGGCGG+TGG | 0.569616 | 4_2:+51965754 | Msa0605890:CDS |
| GGAGTGATGAGCTTGTATTT+GGG | 0.571965 | 4_2:-51966679 | None:intergenic |
| TATGAGAAGGTCTGAGACGG+AGG | 0.575184 | 4_2:-51965597 | None:intergenic |
| AAACGATCAGAGAGGACAGA+AGG | 0.576753 | 4_2:-51966700 | None:intergenic |
| AATTGGCAATTGGTTTCTGA+TGG | 0.585066 | 4_2:+51968290 | Msa0605890:three_prime_UTR |
| AAGTTGGAGAGTATCAGTAG+AGG | 0.586875 | 4_2:+51968076 | Msa0605890:three_prime_UTR |
| TTGGCTGGCTTGGAGGAAGG+AGG | 0.587842 | 4_2:-51965742 | None:intergenic |
| CGGTGGCAAACAGAAGAAGA+AGG | 0.599544 | 4_2:+51965771 | Msa0605890:CDS |
| TTCTGCTCCGAGGTATGAGA+AGG | 0.615505 | 4_2:-51965610 | None:intergenic |
| GTTTAACAGAAGTGGAGCAA+GGG | 0.616121 | 4_2:+51966583 | Msa0605890:intron |
| AACATGGTGCTGTTTGATCA+GGG | 0.617310 | 4_2:+51966628 | Msa0605890:CDS |
| CCGAAGACGAGGGAAAGTGA+GGG | 0.623930 | 4_2:+51964618 | Msa0605890:CDS |
| TCCAAGCCAGCCAAATCTGG+CGG | 0.632166 | 4_2:+51965751 | Msa0605890:CDS |
| GAGGCGATAGCTGCTATCAG+TGG | 0.632281 | 4_2:-51965578 | None:intergenic |
| AGATTAATGGATCACTTGCA+AGG | 0.633639 | 4_2:+51967944 | Msa0605890:intron |
| AGGTATGAGAAGGTCTGAGA+CGG | 0.638023 | 4_2:-51965600 | None:intergenic |
| ACTAATGAGTCCGAAGACGA+GGG | 0.668494 | 4_2:+51964608 | None:intergenic |
| TTAAAATCAGTATCACACCT+AGG | 0.676138 | 4_2:-51968055 | None:intergenic |
| AAGTCAGCAGATTTACACCA+GGG | 0.688410 | 4_2:+51968023 | Msa0605890:CDS |
| TTAATGGATCACTTGCAAGG+AGG | 0.700095 | 4_2:+51967947 | Msa0605890:CDS |
| CACCAGGGCTACAAACACCT+AGG | 0.701247 | 4_2:+51968038 | Msa0605890:CDS |
| GGACGTTCCACAATTCACAC+AGG | 0.710811 | 4_2:-51968439 | None:intergenic |
| ACACCATGATTTCTGCTCCG+AGG | 0.726627 | 4_2:-51965620 | None:intergenic |
| AAAGGAGAAAGTGAACAACA+TGG | 0.737054 | 4_2:+51966612 | Msa0605890:CDS |
| TTACCCTCAAACGATCAGAG+AGG | 0.790654 | 4_2:-51966708 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACACAAATATTTAATTAT+TGG | - | chr4_2:51965135-51965154 | None:intergenic | 10.0% |
| !! | AAAATGATAAAAAAATTCAA+CGG | + | chr4_2:51965305-51965324 | Msa0605890:intron | 10.0% |
| !!! | TTTAATTTTTAAATTAGCAT+TGG | - | chr4_2:51966501-51966520 | None:intergenic | 10.0% |
| !!! | ATTATTGATGAATTAAATTT+TGG | - | chr4_2:51967900-51967919 | None:intergenic | 10.0% |
| !!! | TTATTTTTATATCGTTTATT+TGG | + | chr4_2:51968177-51968196 | Msa0605890:three_prime_UTR | 10.0% |
| !! | AGTATCATAACAATATATAT+TGG | - | chr4_2:51964798-51964817 | None:intergenic | 15.0% |
| !!! | TTTTCTTTTTTCTTTTTTTG+TGG | - | chr4_2:51964954-51964973 | None:intergenic | 15.0% |
| !!! | TTAAAGATTGTAGTAATTTT+AGG | - | chr4_2:51965076-51965095 | None:intergenic | 15.0% |
| !! | ATAAACAATTAAATCTAAAC+AGG | - | chr4_2:51965915-51965934 | None:intergenic | 15.0% |
| !!! | TTTTGTATAATCTATTTCTA+AGG | - | chr4_2:51966353-51966372 | None:intergenic | 15.0% |
| !!! | TATCATTTTCATGTGTTTTT+AGG | - | chr4_2:51965294-51965313 | None:intergenic | 20.0% |
| !! | TAAGTACAAGAAAAGTTAAA+AGG | - | chr4_2:51965808-51965827 | None:intergenic | 20.0% |
| !!! | AATTTAATTTTTGGCCTTTT+TGG | + | chr4_2:51966036-51966055 | Msa0605890:intron | 20.0% |
| !! | AAAAAAAAAACTTTACCACA+CGG | - | chr4_2:51966403-51966422 | None:intergenic | 20.0% |
| !!! | TGATTTGTTAGTGATATTAA+GGG | + | chr4_2:51966549-51966568 | Msa0605890:intron | 20.0% |
| !! | AAACTAGTAATGAAAATCAT+AGG | - | chr4_2:51967053-51967072 | None:intergenic | 20.0% |
| !!! | AAGATAATAACTGCAATTTT+CGG | - | chr4_2:51967479-51967498 | None:intergenic | 20.0% |
| !!! | ACACAAATTTAAGTTGATAA+TGG | + | chr4_2:51967534-51967553 | Msa0605890:intron | 20.0% |
| !! | ACTAAATATTTGTGACTAAA+AGG | + | chr4_2:51967861-51967880 | Msa0605890:intron | 20.0% |
| !! | CTAAATATTTGTGACTAAAA+GGG | + | chr4_2:51967862-51967881 | Msa0605890:intron | 20.0% |
| !!! | AATAATGAATATGTCTTTTG+TGG | + | chr4_2:51967914-51967933 | Msa0605890:intron | 20.0% |
| !! | AACGATATAAAAATAATCTC+AGG | - | chr4_2:51968173-51968192 | None:intergenic | 20.0% |
| !! | GCAATTCAACTAAATAAAAT+AGG | - | chr4_2:51968236-51968255 | None:intergenic | 20.0% |
| !!! | GTGAACACTTTTTTTTTTTA+TGG | + | chr4_2:51968378-51968397 | Msa0605890:three_prime_UTR | 20.0% |
| ! | AAAATAAAGGAAGAAAGAAG+TGG | + | chr4_2:51964645-51964664 | Msa0605890:CDS | 25.0% |
| !!! | TTTAGTTCTTTCAAATTGGA+GGG | - | chr4_2:51964735-51964754 | None:intergenic | 25.0% |
| !!! | GTTCTTTAGTTCTTTCAAAT+TGG | - | chr4_2:51964739-51964758 | None:intergenic | 25.0% |
| ! | GAAGAAAGATGCATTTATAT+TGG | - | chr4_2:51965533-51965552 | None:intergenic | 25.0% |
| !! | ATCTTTCTTCTAAGAATTCT+AGG | + | chr4_2:51965543-51965562 | Msa0605890:intron | 25.0% |
| !! | TCTTTCTTCTAAGAATTCTA+GGG | + | chr4_2:51965544-51965563 | Msa0605890:intron | 25.0% |
| ! | ATGTTAAAAGCTTATGTAAG+TGG | - | chr4_2:51965938-51965957 | None:intergenic | 25.0% |
| ! | AAAAAGCTGTTAATCCAAAA+AGG | - | chr4_2:51966053-51966072 | None:intergenic | 25.0% |
| !!! | AGTTGTTTTGTAAGCTATAT+TGG | + | chr4_2:51966188-51966207 | Msa0605890:intron | 25.0% |
| !! | GAAAACAACGAATTTTCAAT+CGG | - | chr4_2:51966479-51966498 | None:intergenic | 25.0% |
| !!! | GTGATTTGTTAGTGATATTA+AGG | + | chr4_2:51966548-51966567 | Msa0605890:intron | 25.0% |
| !!! | TTTTTTGTGTTTAACAGAAG+TGG | + | chr4_2:51966575-51966594 | Msa0605890:intron | 25.0% |
| !! | TTTACTAATGCCTTTTCTTA+TGG | + | chr4_2:51966735-51966754 | Msa0605890:intron | 25.0% |
| !!! | AAATTTTTCAGTCCTAGTAT+TGG | + | chr4_2:51966944-51966963 | Msa0605890:intron | 25.0% |
| ! | CTAAATCACAGAACATATAT+TGG | + | chr4_2:51967167-51967186 | Msa0605890:intron | 25.0% |
| ! | AGAAGATGAAATGTTAACTA+GGG | + | chr4_2:51967400-51967419 | Msa0605890:intron | 25.0% |
| ! | TCTTGAAGATTCTATTGTTT+AGG | + | chr4_2:51967495-51967514 | Msa0605890:intron | 25.0% |
| ! | AATGTCATCATAAAGTAAAG+AGG | + | chr4_2:51967559-51967578 | Msa0605890:intron | 25.0% |
| ! | AATGACAACGATGAAATTTA+AGG | - | chr4_2:51967585-51967604 | None:intergenic | 25.0% |
| ! | AAATGAACTTAAAATGCACA+AGG | - | chr4_2:51967648-51967667 | None:intergenic | 25.0% |
| !!! | GTTCATTTTTTTGCAATCTT+AGG | + | chr4_2:51967660-51967679 | Msa0605890:intron | 25.0% |
| ! | CTTACACCAAATAATACATT+AGG | - | chr4_2:51967723-51967742 | None:intergenic | 25.0% |
| ! | CTTTAGTTGTAAAAATGTTG+TGG | + | chr4_2:51967750-51967769 | Msa0605890:intron | 25.0% |
| !!! | TTGTATTAGTTTTGCTGAAT+CGG | + | chr4_2:51968144-51968163 | Msa0605890:three_prime_UTR | 25.0% |
| !!! | TAGTTGAATTGCTTTTGTAA+TGG | + | chr4_2:51968244-51968263 | Msa0605890:three_prime_UTR | 25.0% |
| !!! | ATTTTGAAATCCATACCAAT+TGG | + | chr4_2:51968273-51968292 | Msa0605890:three_prime_UTR | 25.0% |
| !!! | TTAGTTTTTGGTTCATGATT+TGG | + | chr4_2:51968321-51968340 | Msa0605890:three_prime_UTR | 25.0% |
| !! | CTTTAGTTCTTTCAAATTGG+AGG | - | chr4_2:51964736-51964755 | None:intergenic | 30.0% |
| CATAATTTATGCAAGATTCG+AGG | + | chr4_2:51964913-51964932 | Msa0605890:intron | 30.0% | |
| ! | TACACTTTTAAATGTGAAGC+TGG | - | chr4_2:51965198-51965217 | None:intergenic | 30.0% |
| !! | AACTTCTTTCATTTTCAAGC+AGG | - | chr4_2:51965248-51965267 | None:intergenic | 30.0% |
| !! | TTTTGTTTCCATGTGTTTCA+AGG | + | chr4_2:51965391-51965410 | Msa0605890:intron | 30.0% |
| ATGAATTACAGAGATGAGTA+TGG | - | chr4_2:51965692-51965711 | None:intergenic | 30.0% | |
| !!! | CTCTGTAATTCATTTTTTGC+AGG | + | chr4_2:51965699-51965718 | Msa0605890:intron | 30.0% |
| ! | CTCCTGTGAATGAATTTTAT+GGG | + | chr4_2:51965889-51965908 | Msa0605890:intron | 30.0% |
| TCTAACAAAACTTATGCAAG+TGG | + | chr4_2:51966284-51966303 | Msa0605890:intron | 30.0% | |
| TTATACCACACCATAAGAAA+AGG | - | chr4_2:51966748-51966767 | None:intergenic | 30.0% | |
| CTAGGACTGAAAAATTTAGA+TGG | - | chr4_2:51966941-51966960 | None:intergenic | 30.0% | |
| AAACTAATTCCACCAATACT+AGG | - | chr4_2:51966959-51966978 | None:intergenic | 30.0% | |
| AAATCATAGGTTCAATACAG+TGG | - | chr4_2:51967040-51967059 | None:intergenic | 30.0% | |
| AGAACATTAAGGCTAAAAAG+TGG | - | chr4_2:51967082-51967101 | None:intergenic | 30.0% | |
| ATATTAAACAGACCAAAACG+CGG | - | chr4_2:51967107-51967126 | None:intergenic | 30.0% | |
| TTTAAGAGATGCTCATTTCT+AGG | + | chr4_2:51967230-51967249 | Msa0605890:intron | 30.0% | |
| TTAAGAGATGCTCATTTCTA+GGG | + | chr4_2:51967231-51967250 | Msa0605890:intron | 30.0% | |
| !! | TTTCTAGGGCAATATGTATT+TGG | + | chr4_2:51967245-51967264 | Msa0605890:intron | 30.0% |
| ! | ATGTTTTCACAAAGTAACTG+AGG | - | chr4_2:51967292-51967311 | None:intergenic | 30.0% |
| GAGAAGATGAAATGTTAACT+AGG | + | chr4_2:51967399-51967418 | Msa0605890:intron | 30.0% | |
| ! | TCTGGACTTGTTTATAAGTT+TGG | + | chr4_2:51967697-51967716 | Msa0605890:intron | 30.0% |
| GTTTGGCCTAATGTATTATT+TGG | + | chr4_2:51967714-51967733 | Msa0605890:intron | 30.0% | |
| TTAAAATCAGTATCACACCT+AGG | - | chr4_2:51968058-51968077 | None:intergenic | 30.0% | |
| !!! | GTGTGATACTGATTTTAAGT+TGG | + | chr4_2:51968060-51968079 | Msa0605890:three_prime_UTR | 30.0% |
| ! | CATCTATCTATGATCGTTTT+TGG | + | chr4_2:51968200-51968219 | Msa0605890:three_prime_UTR | 30.0% |
| !!! | TATGATCGTTTTTGGAATTG+TGG | + | chr4_2:51968208-51968227 | Msa0605890:three_prime_UTR | 30.0% |
| !!! | ATGATCGTTTTTGGAATTGT+GGG | + | chr4_2:51968209-51968228 | Msa0605890:three_prime_UTR | 30.0% |
| !!! | ATGGTTGCACTTTTAGTTTT+TGG | + | chr4_2:51968309-51968328 | Msa0605890:three_prime_UTR | 30.0% |
| AAGTGAGGGCTTGAAAATAA+AGG | + | chr4_2:51964632-51964651 | Msa0605890:CDS | 35.0% | |
| GAAGAAAGAAGTGGAAAGAA+TGG | + | chr4_2:51964654-51964673 | Msa0605890:CDS | 35.0% | |
| !! | CAGGAGATAAAGGTTTTGAT+GGG | + | chr4_2:51964684-51964703 | Msa0605890:intron | 35.0% |
| GAACTAAAGAACTGTATCGA+AGG | + | chr4_2:51964747-51964766 | Msa0605890:intron | 35.0% | |
| !! | TTAGGCTTTGTTTGAGAGTT+TGG | - | chr4_2:51965058-51965077 | None:intergenic | 35.0% |
| CTGGAAAAAGATTCATTCAC+TGG | - | chr4_2:51965179-51965198 | None:intergenic | 35.0% | |
| GTGTGACAAAGAACTTCTAT+TGG | + | chr4_2:51965221-51965240 | Msa0605890:intron | 35.0% | |
| CTGGCTTATAACTAGAAAAC+CGG | - | chr4_2:51965344-51965363 | None:intergenic | 35.0% | |
| !!! | GTTTTCTAGTTATAAGCCAG+CGG | + | chr4_2:51965344-51965363 | Msa0605890:intron | 35.0% |
| CATTGTTTCCTTGAAACACA+TGG | - | chr4_2:51965402-51965421 | None:intergenic | 35.0% | |
| CATGTGTTTCAAGGAAACAA+TGG | + | chr4_2:51965400-51965419 | Msa0605890:intron | 35.0% | |
| TCAAACTGAGACCTAAACTT+CGG | + | chr4_2:51965441-51965460 | Msa0605890:intron | 35.0% | |
| !!! | TTGGACCGAGTTTTTGTTTT+GGG | - | chr4_2:51965491-51965510 | None:intergenic | 35.0% |
| !! | TTTGGACCGAGTTTTTGTTT+TGG | - | chr4_2:51965492-51965511 | None:intergenic | 35.0% |
| ! | GCTCCTGTGAATGAATTTTA+TGG | + | chr4_2:51965888-51965907 | Msa0605890:intron | 35.0% |
| CAAAAGATTAAGCGCATGTT+TGG | - | chr4_2:51966330-51966349 | None:intergenic | 35.0% | |
| ! | TTTTGGCAAAATGATTGCTC+TGG | + | chr4_2:51966429-51966448 | Msa0605890:intron | 35.0% |
| ! | GGCTTTTTGAACAATCTCTT+TGG | + | chr4_2:51966450-51966469 | Msa0605890:intron | 35.0% |
| AAAGGAGAAAGTGAACAACA+TGG | + | chr4_2:51966612-51966631 | Msa0605890:CDS | 35.0% | |
| TTCAGTTAAGAGCTTGTCAT+AGG | - | chr4_2:51966656-51966675 | None:intergenic | 35.0% | |
| ! | TAATGCCTTTTCTTATGGTG+TGG | + | chr4_2:51966740-51966759 | Msa0605890:intron | 35.0% |
| GTATGCGTGCATTATTATGT+TGG | + | chr4_2:51966791-51966810 | Msa0605890:intron | 35.0% | |
| AAAATGATGAGCATCAGGAT+AGG | - | chr4_2:51966892-51966911 | None:intergenic | 35.0% | |
| CTTGAAAAATGATGAGCATC+AGG | - | chr4_2:51966897-51966916 | None:intergenic | 35.0% | |
| !! | TTTTTCAGTCCTAGTATTGG+TGG | + | chr4_2:51966947-51966966 | Msa0605890:intron | 35.0% |
| ! | CTCTTGTATTGTTGTTCAAG+TGG | + | chr4_2:51966993-51967012 | Msa0605890:intron | 35.0% |
| AAAACGCGGATAGAACATTA+AGG | - | chr4_2:51967093-51967112 | None:intergenic | 35.0% | |
| ! | TTAATGTTCTATCCGCGTTT+TGG | + | chr4_2:51967092-51967111 | Msa0605890:intron | 35.0% |
| ! | GCCAGAATTTTTGTGCTAAA+TGG | + | chr4_2:51967144-51967163 | Msa0605890:intron | 35.0% |
| GCCATTTAGCACAAAAATTC+TGG | - | chr4_2:51967148-51967167 | None:intergenic | 35.0% | |
| ! | ATTTTCGGAAACAGGGAAAA+TGG | - | chr4_2:51967464-51967483 | None:intergenic | 35.0% |
| ! | AACTGCAATTTTCGGAAACA+GGG | - | chr4_2:51967471-51967490 | None:intergenic | 35.0% |
| ! | TAACTGCAATTTTCGGAAAC+AGG | - | chr4_2:51967472-51967491 | None:intergenic | 35.0% |
| AAACATCACTGTAAATGCAG+AGG | - | chr4_2:51967612-51967631 | None:intergenic | 35.0% | |
| !! | TAGGTGTCATTCTAAGTTTC+TGG | + | chr4_2:51967679-51967698 | Msa0605890:intron | 35.0% |
| TTGTGGTCTATGCAGATTAA+TGG | + | chr4_2:51967931-51967950 | Msa0605890:intron | 35.0% | |
| ! | AGATTAATGGATCACTTGCA+AGG | + | chr4_2:51967944-51967963 | Msa0605890:intron | 35.0% |
| ! | ATAAGAGACTTGATGGCTAA+AGG | + | chr4_2:51967973-51967992 | Msa0605890:CDS | 35.0% |
| TGATGGCTAAAGGTTTAATC+AGG | + | chr4_2:51967983-51968002 | Msa0605890:CDS | 35.0% | |
| AATCCATACCAATTGGCAAT+TGG | + | chr4_2:51968280-51968299 | Msa0605890:three_prime_UTR | 35.0% | |
| AAACCAATTGCCAATTGGTA+TGG | - | chr4_2:51968286-51968305 | None:intergenic | 35.0% | |
| ATCAGAAACCAATTGCCAAT+TGG | - | chr4_2:51968291-51968310 | None:intergenic | 35.0% | |
| ! | AATTGGCAATTGGTTTCTGA+TGG | + | chr4_2:51968290-51968309 | Msa0605890:three_prime_UTR | 35.0% |
| !!! | TTTTGGTTCATGATTTGGTC+AGG | + | chr4_2:51968326-51968345 | Msa0605890:three_prime_UTR | 35.0% |
| ATAAACTCCTGTGTGAATTG+TGG | + | chr4_2:51968432-51968451 | Msa0605890:three_prime_UTR | 35.0% | |
| TGGAAAGAATGGAAAACTCC+AGG | + | chr4_2:51964665-51964684 | Msa0605890:CDS | 40.0% | |
| TGGAAAACTCCAGGAGATAA+AGG | + | chr4_2:51964674-51964693 | Msa0605890:CDS | 40.0% | |
| CCATCAAAACCTTTATCTCC+TGG | - | chr4_2:51964686-51964705 | None:intergenic | 40.0% | |
| !! | CCAGGAGATAAAGGTTTTGA+TGG | + | chr4_2:51964683-51964702 | Msa0605890:intron | 40.0% |
| CTAAAGAACTGTATCGAAGG+AGG | + | chr4_2:51964750-51964769 | Msa0605890:intron | 40.0% | |
| !!! | TTCTTTTTTTGTGGTGTCCG+AGG | - | chr4_2:51964945-51964964 | None:intergenic | 40.0% |
| !! | GCTTTGTTTGAGAGTTTGGA+GGG | - | chr4_2:51965054-51965073 | None:intergenic | 40.0% |
| GCTTATAACTAGAAAACCGG+CGG | - | chr4_2:51965341-51965360 | None:intergenic | 40.0% | |
| AAACAGTAGTTAACTACCGC+TGG | - | chr4_2:51965363-51965382 | None:intergenic | 40.0% | |
| AGCGGTAGTTAACTACTGTT+TGG | + | chr4_2:51965362-51965381 | Msa0605890:intron | 40.0% | |
| GCGGTAGTTAACTACTGTTT+GGG | + | chr4_2:51965363-51965382 | Msa0605890:intron | 40.0% | |
| CTTCTTAAAGCTACGTCGTT+TGG | - | chr4_2:51965510-51965529 | None:intergenic | 40.0% | |
| GGCCCATAAAATTCATTCAC+AGG | - | chr4_2:51965894-51965913 | None:intergenic | 40.0% | |
| TTATCTTCCTTAATGCCGTG+TGG | + | chr4_2:51966385-51966404 | Msa0605890:intron | 40.0% | |
| AACTTTACCACACGGCATTA+AGG | - | chr4_2:51966395-51966414 | None:intergenic | 40.0% | |
| TGTTTAACAGAAGTGGAGCA+AGG | + | chr4_2:51966582-51966601 | Msa0605890:intron | 40.0% | |
| GTTTAACAGAAGTGGAGCAA+GGG | + | chr4_2:51966583-51966602 | Msa0605890:intron | 40.0% | |
| !! | AACATGGTGCTGTTTGATCA+GGG | + | chr4_2:51966628-51966647 | Msa0605890:CDS | 40.0% |
| GGAGTGATGAGCTTGTATTT+GGG | - | chr4_2:51966682-51966701 | None:intergenic | 40.0% | |
| AGGAGTGATGAGCTTGTATT+TGG | - | chr4_2:51966683-51966702 | None:intergenic | 40.0% | |
| ! | GGCTCGTATTTTCTGATAAG+TGG | + | chr4_2:51967014-51967033 | Msa0605890:intron | 40.0% |
| CTAGGGCAATATGTATTTGG+AGG | + | chr4_2:51967248-51967267 | Msa0605890:intron | 40.0% | |
| !! | GGAGGTGTTTCTGAGAATAT+AGG | + | chr4_2:51967266-51967285 | Msa0605890:intron | 40.0% |
| ! | TTAATGGATCACTTGCAAGG+AGG | + | chr4_2:51967947-51967966 | Msa0605890:CDS | 40.0% |
| ! | TAATGGATCACTTGCAAGGA+GGG | + | chr4_2:51967948-51967967 | Msa0605890:CDS | 40.0% |
| GGCTAAAGGTTTAATCAGGT+TGG | + | chr4_2:51967987-51968006 | Msa0605890:CDS | 40.0% | |
| AAGTCAGCAGATTTACACCA+GGG | + | chr4_2:51968023-51968042 | Msa0605890:CDS | 40.0% | |
| !! | AAGTTGGAGAGTATCAGTAG+AGG | + | chr4_2:51968076-51968095 | Msa0605890:three_prime_UTR | 40.0% |
| AAGATTCGAGGTTCGAACCT+CGG | + | chr4_2:51964925-51964944 | Msa0605890:intron | 45.0% | |
| GTTTGAGAGTTTGGAGGGTA+GGG | - | chr4_2:51965049-51965068 | None:intergenic | 45.0% | |
| TGTTTGAGAGTTTGGAGGGT+AGG | - | chr4_2:51965050-51965069 | None:intergenic | 45.0% | |
| !! | GGCTTTGTTTGAGAGTTTGG+AGG | - | chr4_2:51965055-51965074 | None:intergenic | 45.0% |
| CAACGGTAGTTAATTACCGC+CGG | + | chr4_2:51965322-51965341 | Msa0605890:intron | 45.0% | |
| ! | CGTGAGGCATTTAACCTACT+GGG | - | chr4_2:51965467-51965486 | None:intergenic | 45.0% |
| CCAGTAGGTTAAATGCCTCA+CGG | + | chr4_2:51965465-51965484 | Msa0605890:intron | 45.0% | |
| !!! | AGTTTTTGTTTTGGGCCGTG+AGG | - | chr4_2:51965483-51965502 | None:intergenic | 45.0% |
| CACGGCCCAAAACAAAAACT+CGG | + | chr4_2:51965483-51965502 | Msa0605890:intron | 45.0% | |
| AGGTATGAGAAGGTCTGAGA+CGG | - | chr4_2:51965603-51965622 | None:intergenic | 45.0% | |
| TCTCAGACCTTCTCATACCT+CGG | + | chr4_2:51965603-51965622 | Msa0605890:CDS | 45.0% | |
| ATACCTCGGAGCAGAAATCA+TGG | + | chr4_2:51965617-51965636 | Msa0605890:CDS | 45.0% | |
| !!! | TTTTTTGCAGGCACCCAAGA+AGG | + | chr4_2:51965711-51965730 | Msa0605890:intron | 45.0% |
| !! | CAACATGGTGCTGTTTGATC+AGG | + | chr4_2:51966627-51966646 | Msa0605890:CDS | 45.0% |
| AAACGATCAGAGAGGACAGA+AGG | - | chr4_2:51966703-51966722 | None:intergenic | 45.0% | |
| TGTCCTCTCTGATCGTTTGA+GGG | + | chr4_2:51966705-51966724 | Msa0605890:CDS | 45.0% | |
| TTACCCTCAAACGATCAGAG+AGG | - | chr4_2:51966711-51966730 | None:intergenic | 45.0% | |
| CATCACTGTAAATGCAGAGG+TGG | - | chr4_2:51967609-51967628 | None:intergenic | 45.0% | |
| TCTAGTGTGATGCACACCTT+TGG | + | chr4_2:51967805-51967824 | Msa0605890:intron | 45.0% | |
| ! | GTGAAAGTGCAAGCAACCAA+AGG | - | chr4_2:51967824-51967843 | None:intergenic | 45.0% |
| GAGGGCTATAAGAGACTTGA+TGG | + | chr4_2:51967966-51967985 | Msa0605890:CDS | 45.0% | |
| CAAGTCAGCAGATTTACACC+AGG | + | chr4_2:51968022-51968041 | Msa0605890:CDS | 45.0% | |
| !! | TGGTTCATGATTTGGTCAGG+TGG | + | chr4_2:51968329-51968348 | Msa0605890:three_prime_UTR | 45.0% |
| !! | GGTTCATGATTTGGTCAGGT+GGG | + | chr4_2:51968330-51968349 | Msa0605890:three_prime_UTR | 45.0% |
| !!! | AAACAATTAAATTTAATTTT+TGG | + | chr4_2:51966027-51966046 | Msa0605890:intron | 5.0% |
| !!! | GTTTTTTTTTTTTTTTTTTT+TGG | + | chr4_2:51966412-51966431 | Msa0605890:intron | 5.0% |
| CCTTACCAACTAAGCTCACG+GGG | - | chr4_2:51964887-51964906 | None:intergenic | 50.0% | |
| CCCTTACCAACTAAGCTCAC+GGG | - | chr4_2:51964888-51964907 | None:intergenic | 50.0% | |
| !! | CCCGTGAGCTTAGTTGGTAA+GGG | + | chr4_2:51964885-51964904 | Msa0605890:intron | 50.0% |
| GCCCTTACCAACTAAGCTCA+CGG | - | chr4_2:51964889-51964908 | None:intergenic | 50.0% | |
| ! | GGGTAGGGAAAGGAAGGTTT+TGG | - | chr4_2:51965034-51965053 | None:intergenic | 50.0% |
| TTTGGAGGGTAGGGAAAGGA+AGG | - | chr4_2:51965040-51965059 | None:intergenic | 50.0% | |
| AGAGTTTGGAGGGTAGGGAA+AGG | - | chr4_2:51965044-51965063 | None:intergenic | 50.0% | |
| AACCTACTGGGCCGAAGTTT+AGG | - | chr4_2:51965455-51965474 | None:intergenic | 50.0% | |
| ! | CCGTGAGGCATTTAACCTAC+TGG | - | chr4_2:51965468-51965487 | None:intergenic | 50.0% |
| ! | TATGAGAAGGTCTGAGACGG+AGG | - | chr4_2:51965600-51965619 | None:intergenic | 50.0% |
| TTCTGCTCCGAGGTATGAGA+AGG | - | chr4_2:51965613-51965632 | None:intergenic | 50.0% | |
| ACACCATGATTTCTGCTCCG+AGG | - | chr4_2:51965623-51965642 | None:intergenic | 50.0% | |
| CGGTGGCAAACAGAAGAAGA+AGG | + | chr4_2:51965771-51965790 | Msa0605890:CDS | 50.0% | |
| GTGGAGCAAGGGAAAGCAAA+AGG | + | chr4_2:51966594-51966613 | Msa0605890:CDS | 50.0% | |
| CTGTCCTCTCTGATCGTTTG+AGG | + | chr4_2:51966704-51966723 | Msa0605890:CDS | 50.0% | |
| TCCGAAGACGAGGGAAAGTG+AGG | + | chr4_2:51964617-51964636 | Msa0605890:CDS | 55.0% | |
| CCCTCACTTTCCCTCGTCTT+CGG | - | chr4_2:51964621-51964640 | None:intergenic | 55.0% | |
| CCGAAGACGAGGGAAAGTGA+GGG | + | chr4_2:51964618-51964637 | Msa0605890:CDS | 55.0% | |
| ! | CCCCGTGAGCTTAGTTGGTA+AGG | + | chr4_2:51964884-51964903 | Msa0605890:intron | 55.0% |
| GACCTAAACTTCGGCCCAGT+AGG | + | chr4_2:51965450-51965469 | Msa0605890:intron | 55.0% | |
| GAGGCGATAGCTGCTATCAG+TGG | - | chr4_2:51965581-51965600 | None:intergenic | 55.0% | |
| !! | GATTTGGCTGGCTTGGAGGA+AGG | - | chr4_2:51965748-51965767 | None:intergenic | 55.0% |
| TCCTCCAAGCCAGCCAAATC+TGG | + | chr4_2:51965748-51965767 | Msa0605890:CDS | 55.0% | |
| TCCAAGCCAGCCAAATCTGG+CGG | + | chr4_2:51965751-51965770 | Msa0605890:CDS | 55.0% | |
| CTGTTTGCCACCGCCAGATT+TGG | - | chr4_2:51965764-51965783 | None:intergenic | 55.0% | |
| CACCAGGGCTACAAACACCT+AGG | + | chr4_2:51968038-51968057 | Msa0605890:CDS | 55.0% | |
| CACCTAGGTGTTTGTAGCCC+TGG | - | chr4_2:51968043-51968062 | None:intergenic | 55.0% | |
| CTCGTCCCCGTGAGCTTAGT+TGG | + | chr4_2:51964879-51964898 | Msa0605890:intron | 60.0% | |
| GGAGGAGGAGCTGCCTTCTT+GGG | - | chr4_2:51965727-51965746 | None:intergenic | 60.0% | |
| AGGAGGAGGAGCTGCCTTCT+TGG | - | chr4_2:51965728-51965747 | None:intergenic | 60.0% | |
| !! | TTGGCTGGCTTGGAGGAAGG+AGG | - | chr4_2:51965745-51965764 | None:intergenic | 60.0% |
| !! | GCCAGATTTGGCTGGCTTGG+AGG | - | chr4_2:51965752-51965771 | None:intergenic | 60.0% |
| ! | ACCGCCAGATTTGGCTGGCT+TGG | - | chr4_2:51965755-51965774 | None:intergenic | 60.0% |
| AAGCCAGCCAAATCTGGCGG+TGG | + | chr4_2:51965754-51965773 | Msa0605890:CDS | 60.0% | |
| TTGCCACCGCCAGATTTGGC+TGG | - | chr4_2:51965760-51965779 | None:intergenic | 60.0% | |
| !! | GCTGGCTTGGAGGAAGGAGG+AGG | - | chr4_2:51965742-51965761 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 51964612 | 51968457 | 51964612 | ID=Msa0605890;Name=Msa0605890 |
| chr4_2 | mRNA | 51964612 | 51968457 | 51964612 | ID=Msa0605890-mRNA-1;Parent=Msa0605890;Name=Msa0605890-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.5|0.6|0.8|1|1|5|398|160 |
| chr4_2 | exon | 51964612 | 51964695 | 51964612 | ID=Msa0605890-mRNA-1:exon:12488;Parent=Msa0605890-mRNA-1 |
| chr4_2 | exon | 51965565 | 51965642 | 51965565 | ID=Msa0605890-mRNA-1:exon:12489;Parent=Msa0605890-mRNA-1 |
| chr4_2 | exon | 51965721 | 51965792 | 51965721 | ID=Msa0605890-mRNA-1:exon:12490;Parent=Msa0605890-mRNA-1 |
| chr4_2 | exon | 51966592 | 51966726 | 51966592 | ID=Msa0605890-mRNA-1:exon:12491;Parent=Msa0605890-mRNA-1 |
| chr4_2 | exon | 51967946 | 51968457 | 51967946 | ID=Msa0605890-mRNA-1:exon:12492;Parent=Msa0605890-mRNA-1 |
| chr4_2 | CDS | 51964612 | 51964695 | 51964612 | ID=Msa0605890-mRNA-1:cds;Parent=Msa0605890-mRNA-1 |
| chr4_2 | CDS | 51965565 | 51965642 | 51965565 | ID=Msa0605890-mRNA-1:cds;Parent=Msa0605890-mRNA-1 |
| chr4_2 | CDS | 51965721 | 51965792 | 51965721 | ID=Msa0605890-mRNA-1:cds;Parent=Msa0605890-mRNA-1 |
| chr4_2 | CDS | 51966592 | 51966726 | 51966592 | ID=Msa0605890-mRNA-1:cds;Parent=Msa0605890-mRNA-1 |
| chr4_2 | CDS | 51967946 | 51968059 | 51967946 | ID=Msa0605890-mRNA-1:cds;Parent=Msa0605890-mRNA-1 |
| chr4_2 | three_prime_UTR | 51968060 | 51968457 | 51968060 | ID=Msa0605890-mRNA-1:three_prime_utr;Parent=Msa0605890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
