Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686550 | XP_003606958.1 | 100.000 | 107 | 0 | 0 | 1 | 107 | 1 | 107 | 9.15e-71 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686550 | sp|Q9SIK2|RS252_ARATH | 92.593 | 108 | 7 | 1 | 1 | 107 | 1 | 108 | 6.88e-53 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686550 | B7FH10 | 100.000 | 107 | 0 | 0 | 1 | 107 | 1 | 107 | 4.37e-71 | 216 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0686550 | 0.836980 | 6.808778e-57 | -8.615850e-47 |
| Msa0003330 | Msa0686550 | 0.829719 | 4.398412e-55 | -8.615850e-47 |
| Msa0027590 | Msa0686550 | 0.859369 | 4.338090e-63 | -8.615850e-47 |
| Msa0072570 | Msa0686550 | 0.816199 | 6.255555e-52 | -8.615850e-47 |
| Msa0075350 | Msa0686550 | 0.823816 | 1.129914e-53 | -8.615850e-47 |
| Msa0087910 | Msa0686550 | 0.809639 | 1.712823e-50 | -8.615850e-47 |
| Msa0114570 | Msa0686550 | 0.805966 | 1.034361e-49 | -8.615850e-47 |
| Msa0114600 | Msa0686550 | 0.807440 | 5.048760e-50 | -8.615850e-47 |
| Msa0602900 | Msa0686550 | 0.831764 | 1.387168e-55 | -8.615850e-47 |
| Msa0605890 | Msa0686550 | 0.861064 | 1.333447e-63 | -8.615850e-47 |
| Msa0619230 | Msa0686550 | 0.862854 | 3.773081e-64 | -8.615850e-47 |
| Msa0643960 | Msa0686550 | 0.830643 | 2.615859e-55 | -8.615850e-47 |
| Msa0649890 | Msa0686550 | 0.833337 | 5.650321e-56 | -8.615850e-47 |
| Msa0653060 | Msa0686550 | 0.813416 | 2.587586e-51 | -8.615850e-47 |
| Msa0686550 | Msa0694400 | 0.843286 | 1.538600e-58 | -8.615850e-47 |
| Msa0686550 | Msa0704860 | 0.850727 | 1.408722e-60 | -8.615850e-47 |
| Msa0686550 | Msa0705800 | 0.802976 | 4.345369e-49 | -8.615850e-47 |
| Msa0686550 | Msa0708630 | 0.802930 | 4.440141e-49 | -8.615850e-47 |
| Msa0686550 | Msa0749000 | 0.817686 | 2.899270e-52 | -8.615850e-47 |
| Msa0686550 | Msa0788380 | 0.855782 | 5.006673e-62 | -8.615850e-47 |
| Msa0686550 | Msa0790450 | 0.815364 | 9.603557e-52 | -8.615850e-47 |
| Msa0686550 | Msa0796490 | 0.813764 | 2.169787e-51 | -8.615850e-47 |
| Msa0686550 | Msa0834220 | 0.816599 | 5.089050e-52 | -8.615850e-47 |
| Msa0686550 | Msa0929700 | 0.863397 | 2.563688e-64 | -8.615850e-47 |
| Msa0686550 | Msa0930100 | 0.811508 | 6.758629e-51 | -8.615850e-47 |
| Msa0686550 | Msa0930890 | 0.854043 | 1.600785e-61 | -8.615850e-47 |
| Msa0686550 | Msa0978470 | 0.806581 | 7.672267e-50 | -8.615850e-47 |
| Msa0686550 | Msa1019110 | 0.814927 | 1.200858e-51 | -8.615850e-47 |
| Msa0686550 | Msa1037290 | 0.806731 | 7.133101e-50 | -8.615850e-47 |
| Msa0686550 | Msa1040160 | 0.815593 | 8.539291e-52 | -8.615850e-47 |
| Msa0686550 | Msa1041680 | 0.847708 | 9.748533e-60 | -8.615850e-47 |
| Msa0686550 | Msa1082050 | 0.806452 | 8.171314e-50 | -8.615850e-47 |
| Msa0686550 | Msa1093500 | 0.805025 | 1.629224e-49 | -8.615850e-47 |
| Msa0686550 | Msa1116940 | 0.811225 | 7.788614e-51 | -8.615850e-47 |
| Msa0686550 | Msa1126690 | 0.825294 | 5.068939e-54 | -8.615850e-47 |
| Msa0686550 | Msa1164150 | 0.818282 | 2.126529e-52 | -8.615850e-47 |
| Msa0686550 | Msa1166570 | 0.840960 | 6.347991e-58 | -8.615850e-47 |
| Msa0686550 | Msa1180000 | 0.827917 | 1.200603e-54 | -8.615850e-47 |
| Msa0686550 | Msa1186030 | 0.831820 | 1.344178e-55 | -8.615850e-47 |
| Msa0686550 | Msa1235950 | 0.832852 | 7.460012e-56 | -8.615850e-47 |
| Msa0686550 | Msa1235980 | 0.841281 | 5.226958e-58 | -8.615850e-47 |
| Msa0686550 | Msa1237040 | 0.835311 | 1.807173e-56 | -8.615850e-47 |
| Msa0686550 | Msa1240270 | 0.807696 | 4.455666e-50 | -8.615850e-47 |
| Msa0686550 | Msa1258540 | 0.838297 | 3.126664e-57 | -8.615850e-47 |
| Msa0686550 | Msa1270640 | 0.821315 | 4.311293e-53 | -8.615850e-47 |
| Msa0686550 | Msa1270710 | 0.817607 | 3.021214e-52 | -8.615850e-47 |
| Msa0686550 | Msa1278130 | 0.829111 | 6.181058e-55 | -8.615850e-47 |
| Msa0686550 | Msa1311400 | 0.816943 | 4.261042e-52 | -8.615850e-47 |
| Msa0686550 | Msa1317390 | 0.839928 | 1.181424e-57 | -8.615850e-47 |
| Msa0686550 | Msa1341780 | 0.810166 | 1.319507e-50 | -8.615850e-47 |
| Msa0686550 | Msa1351020 | 0.867328 | 1.484538e-65 | -8.615850e-47 |
| Msa0686550 | Msa1351910 | 0.806118 | 9.607492e-50 | -8.615850e-47 |
| Msa0686550 | Msa1368920 | 0.809221 | 2.105966e-50 | -8.615850e-47 |
| Msa0686550 | Msa1385480 | 0.832223 | 1.068740e-55 | -8.615850e-47 |
| Msa0686550 | Msa1390760 | 0.863733 | 2.016197e-64 | -8.615850e-47 |
| Msa0686550 | Msa1407550 | 0.851798 | 7.015942e-61 | -8.615850e-47 |
| Msa0686550 | Msa1432310 | 0.829710 | 4.420197e-55 | -8.615850e-47 |
| Msa0686550 | Msa1441220 | -0.825875 | 3.692479e-54 | -8.615850e-47 |
| Msa0686550 | Msa1446410 | 0.872132 | 4.020591e-67 | -8.615850e-47 |
| Msa0686550 | Msa1450560 | 0.817563 | 3.091136e-52 | -8.615850e-47 |
| Msa0686550 | Msa1453530 | 0.815736 | 7.932938e-52 | -8.615850e-47 |
| Msa0686550 | Msa1463570 | 0.846038 | 2.791826e-59 | -8.615850e-47 |
| Msa0686550 | Msa1465700 | 0.847514 | 1.102274e-59 | -8.615850e-47 |
| Msa0128330 | Msa0686550 | 0.849976 | 2.287910e-60 | -8.615850e-47 |
| Msa0132460 | Msa0686550 | 0.802382 | 5.760058e-49 | -8.615850e-47 |
| Msa0134580 | Msa0686550 | 0.803755 | 2.995912e-49 | -8.615850e-47 |
| Msa0167860 | Msa0686550 | 0.878496 | 2.678644e-69 | -8.615850e-47 |
| Msa0168320 | Msa0686550 | 0.811933 | 5.464116e-51 | -8.615850e-47 |
| Msa0174580 | Msa0686550 | 0.832811 | 7.639489e-56 | -8.615850e-47 |
| Msa0182050 | Msa0686550 | 0.801909 | 7.208430e-49 | -8.615850e-47 |
| Msa0182100 | Msa0686550 | 0.811503 | 6.775685e-51 | -8.615850e-47 |
| Msa0191450 | Msa0686550 | 0.867935 | 9.483796e-66 | -8.615850e-47 |
| Msa0191550 | Msa0686550 | 0.881359 | 2.562699e-70 | -8.615850e-47 |
| Msa0192300 | Msa0686550 | 0.828133 | 1.064757e-54 | -8.615850e-47 |
| Msa0194940 | Msa0686550 | 0.876316 | 1.538097e-68 | -8.615850e-47 |
| Msa0195030 | Msa0686550 | 0.812219 | 4.733575e-51 | -8.615850e-47 |
| Msa0233550 | Msa0686550 | 0.846640 | 1.913352e-59 | -8.615850e-47 |
| Msa0235050 | Msa0686550 | 0.828995 | 6.593905e-55 | -8.615850e-47 |
| Msa0237180 | Msa0686550 | 0.806694 | 7.265388e-50 | -8.615850e-47 |
| Msa0369410 | Msa0686550 | 0.816550 | 5.219642e-52 | -8.615850e-47 |
| Msa0376850 | Msa0686550 | 0.819453 | 1.152245e-52 | -8.615850e-47 |
| Msa0377520 | Msa0686550 | 0.815279 | 1.002750e-51 | -8.615850e-47 |
| Msa0426090 | Msa0686550 | 0.853482 | 2.320569e-61 | -8.615850e-47 |
| Msa0426250 | Msa0686550 | 0.861882 | 7.507941e-64 | -8.615850e-47 |
| Msa0471880 | Msa0686550 | 0.804088 | 2.555231e-49 | -8.615850e-47 |
| Msa0472480 | Msa0686550 | 0.844418 | 7.654073e-59 | -8.615850e-47 |
| Msa0481520 | Msa0686550 | 0.830987 | 2.154403e-55 | -8.615850e-47 |
| Msa0239420 | Msa0686550 | 0.858039 | 1.082848e-62 | -8.615850e-47 |
| Msa0274940 | Msa0686550 | 0.803115 | 4.065556e-49 | -8.615850e-47 |
| Msa0277600 | Msa0686550 | 0.830428 | 2.953339e-55 | -8.615850e-47 |
| Msa0281330 | Msa0686550 | 0.849540 | 3.028169e-60 | -8.615850e-47 |
| Msa0281370 | Msa0686550 | 0.880028 | 7.689485e-70 | -8.615850e-47 |
| Msa0301250 | Msa0686550 | 0.826228 | 3.044349e-54 | -8.615850e-47 |
| Msa0312210 | Msa0686550 | 0.810267 | 1.255125e-50 | -8.615850e-47 |
| Msa0313060 | Msa0686550 | 0.847254 | 1.298789e-59 | -8.615850e-47 |
| Msa0313520 | Msa0686550 | 0.804744 | 1.864981e-49 | -8.615850e-47 |
| Msa0315430 | Msa0686550 | 0.886173 | 4.306529e-72 | -8.615850e-47 |
| Msa0315660 | Msa0686550 | 0.809380 | 1.947242e-50 | -8.615850e-47 |
| Msa0485220 | Msa0686550 | 0.804309 | 2.297685e-49 | -8.615850e-47 |
| Msa0511760 | Msa0686550 | 0.808391 | 3.169003e-50 | -8.615850e-47 |
| Msa0516830 | Msa0686550 | 0.819728 | 9.974312e-53 | -8.615850e-47 |
| Msa0517480 | Msa0686550 | 0.807639 | 4.580896e-50 | -8.615850e-47 |
| Msa0547920 | Msa0686550 | 0.839656 | 1.390704e-57 | -8.615850e-47 |
| Msa0550420 | Msa0686550 | 0.857649 | 1.413911e-62 | -8.615850e-47 |
| Msa0573550 | Msa0686550 | 0.861505 | 9.786903e-64 | -8.615850e-47 |
| Msa0574780 | Msa0686550 | 0.862183 | 6.070903e-64 | -8.615850e-47 |
| Msa0579830 | Msa0686550 | 0.833505 | 5.132135e-56 | -8.615850e-47 |
| Msa0597240 | Msa0686550 | 0.801870 | 7.342777e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686550 | MtrunA17_Chr4g0035271 | 100.000 | 107 | 0 | 0 | 1 | 107 | 1 | 107 | 8.41e-75 | 216 |
| Msa0686550 | MtrunA17_Chr2g0321571 | 99.065 | 107 | 1 | 0 | 1 | 107 | 1 | 107 | 2.02e-74 | 215 |
| Msa0686550 | MtrunA17_Chr6g0455051 | 75.556 | 45 | 2 | 1 | 26 | 70 | 6 | 41 | 1.05e-16 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686550 | AT2G21580.1 | 92.593 | 108 | 7 | 1 | 1 | 107 | 1 | 108 | 7.00e-54 | 164 |
| Msa0686550 | AT4G39200.1 | 89.815 | 108 | 10 | 1 | 1 | 107 | 1 | 108 | 2.55e-52 | 160 |
| Msa0686550 | AT2G21580.2 | 88.889 | 108 | 10 | 2 | 1 | 107 | 1 | 107 | 3.15e-52 | 159 |
| Msa0686550 | AT4G39200.2 | 87.963 | 108 | 11 | 2 | 1 | 107 | 1 | 107 | 1.18e-50 | 155 |
| Msa0686550 | AT4G34555.1 | 89.720 | 107 | 10 | 1 | 1 | 106 | 1 | 107 | 3.15e-50 | 154 |
| Msa0686550 | AT2G16360.1 | 86.667 | 105 | 13 | 1 | 2 | 105 | 2 | 106 | 1.12e-46 | 145 |
Find 58 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAGTGATGAGCTTGTATT+TGG | 0.258319 | 4_4:+51057315 | None:intergenic |
| CTGTTTGCCACCGCCAGATT+TGG | 0.259942 | 4_4:+51058246 | None:intergenic |
| AAGGACCTTGCACGATTTAC+AGG | 0.260315 | 4_4:+51055497 | None:intergenic |
| ATCTTTCTTCCAAGAATTCT+AGG | 0.260583 | 4_4:-51058464 | None:intergenic |
| TTGTGGTTTATGCAGATTAA+TGG | 0.270211 | 4_4:-51056044 | Msa0686550:intron |
| CGATGAAACCCTAGAATTCT+TGG | 0.281409 | 4_4:+51058455 | None:intergenic |
| GGAGGAGGAGCTGCCTTCTT+GGG | 0.308666 | 4_4:+51058283 | None:intergenic |
| TCCTCCAAGCCAGCCAAATC+TGG | 0.317280 | 4_4:-51058259 | Msa0686550:CDS |
| AAAATGTGACCACATAAAAT+AGG | 0.328768 | 4_4:+51055565 | None:intergenic |
| ACCGCCAGATTTGGCTGGCT+TGG | 0.348344 | 4_4:+51058255 | None:intergenic |
| AGGAGGAGGAGCTGCCTTCT+TGG | 0.379715 | 4_4:+51058282 | None:intergenic |
| TGATGGCTAAAGGTTTAATC+AGG | 0.382324 | 4_4:-51055992 | Msa0686550:CDS |
| CTGTCCTCTCTGATCGTTTG+AGG | 0.389732 | 4_4:-51057291 | Msa0686550:CDS |
| GAGGGCTATAAGAGACTTGA+TGG | 0.404889 | 4_4:-51056009 | Msa0686550:CDS |
| CACCTAGGTGTTTGTAGCCC+TGG | 0.406263 | 4_4:+51055935 | None:intergenic |
| TTGCCACCGCCAGATTTGGC+TGG | 0.423311 | 4_4:+51058250 | None:intergenic |
| CAACATGGTGCTGTTTGATC+AGG | 0.424061 | 4_4:-51057368 | Msa0686550:CDS |
| TGTCCTCTCTGATCGTTTGA+GGG | 0.452861 | 4_4:-51057290 | Msa0686550:intron |
| GCCAGATTTGGCTGGCTTGG+AGG | 0.465517 | 4_4:+51058258 | None:intergenic |
| ATAAGAGACTTGATGGCTAA+AGG | 0.477465 | 4_4:-51056002 | Msa0686550:CDS |
| AAATCAGTTGCCAAATGGTA+TGG | 0.478784 | 4_4:+51055684 | None:intergenic |
| GTGGAGCAAGGGAAAGCAAA+AGG | 0.500179 | 4_4:-51057401 | Msa0686550:CDS |
| GCTGGCTTGGAGGAAGGAGG+AGG | 0.501135 | 4_4:+51058268 | None:intergenic |
| TTCAGTTAAGAGCTTGTCAT+AGG | 0.503535 | 4_4:+51057342 | None:intergenic |
| TGTTCATGATCTGGTCAGGT+GGG | 0.511109 | 4_4:-51055598 | Msa0686550:three_prime_UTR |
| ATCAGAAATCAGTTGCCAAA+TGG | 0.514200 | 4_4:+51055679 | None:intergenic |
| TAGGGTTTCATCGTCTCCAC+TGG | 0.517133 | 4_4:-51058445 | Msa0686550:five_prime_UTR |
| TCTTTCTTCCAAGAATTCTA+GGG | 0.518632 | 4_4:-51058463 | None:intergenic |
| GGCTAAAGGTTTAATCAGGT+TGG | 0.524410 | 4_4:-51055988 | Msa0686550:CDS |
| TTGTTCATGATCTGGTCAGG+TGG | 0.526009 | 4_4:-51055599 | Msa0686550:three_prime_UTR |
| TAATGGATCACTTGCAAGGA+GGG | 0.537201 | 4_4:-51056027 | Msa0686550:CDS |
| ATTTGGCAACTGATTTCTGA+TGG | 0.538819 | 4_4:-51055677 | Msa0686550:three_prime_UTR |
| GATTTGGCTGGCTTGGAGGA+AGG | 0.542704 | 4_4:+51058262 | None:intergenic |
| ATACCTCGGAGCAGAAATCA+TGG | 0.547670 | 4_4:-51058390 | Msa0686550:intron |
| TCTCAGACCTTCTCATACCT+CGG | 0.548806 | 4_4:-51058404 | Msa0686550:five_prime_UTR |
| CAAGTCAGCAGATTTACACC+AGG | 0.557612 | 4_4:-51055953 | Msa0686550:CDS |
| AAGCCAGCCAAATCTGGCGG+TGG | 0.569616 | 4_4:-51058253 | Msa0686550:CDS |
| TCTTTAACAGAAGTGGAGCA+AGG | 0.571815 | 4_4:-51057413 | Msa0686550:intron |
| GGAGTGATGAGCTTGTATTT+GGG | 0.571965 | 4_4:+51057316 | None:intergenic |
| TATGAGAAGGTCTGAGACGG+AGG | 0.575184 | 4_4:+51058410 | None:intergenic |
| AAACGATCAGAGAGGACAGA+AGG | 0.576753 | 4_4:+51057295 | None:intergenic |
| TTGGCTGGCTTGGAGGAAGG+AGG | 0.587842 | 4_4:+51058265 | None:intergenic |
| CTTTAACAGAAGTGGAGCAA+GGG | 0.594434 | 4_4:-51057412 | Msa0686550:intron |
| CGGTGGCAAACAGAAGAAGA+AGG | 0.599544 | 4_4:-51058236 | Msa0686550:intron |
| TTCTGCTCCGAGGTATGAGA+AGG | 0.615505 | 4_4:+51058397 | None:intergenic |
| AACATGGTGCTGTTTGATCA+GGG | 0.617310 | 4_4:-51057367 | Msa0686550:CDS |
| GAGGCGCTAGCTGCTACCAG+TGG | 0.624312 | 4_4:+51058429 | None:intergenic |
| AAACTCCTGTAAATCGTGCA+AGG | 0.626698 | 4_4:-51055502 | None:intergenic |
| TCCAAGCCAGCCAAATCTGG+CGG | 0.632166 | 4_4:-51058256 | Msa0686550:CDS |
| AGATTAATGGATCACTTGCA+AGG | 0.633639 | 4_4:-51056031 | Msa0686550:CDS |
| AGGTATGAGAAGGTCTGAGA+CGG | 0.638023 | 4_4:+51058407 | None:intergenic |
| TTAAAATCAGTATCACACCT+AGG | 0.685196 | 4_4:+51055920 | None:intergenic |
| AAGTCAGCAGATTTACACCA+GGG | 0.688410 | 4_4:-51055952 | Msa0686550:CDS |
| TTAATGGATCACTTGCAAGG+AGG | 0.700095 | 4_4:-51056028 | Msa0686550:CDS |
| CACCAGGGCTACAAACACCT+AGG | 0.701247 | 4_4:-51055937 | Msa0686550:exon |
| ACACCATGATTTCTGCTCCG+AGG | 0.726627 | 4_4:+51058387 | None:intergenic |
| AAAGGAGAAAGTGAACAACA+TGG | 0.737054 | 4_4:-51057383 | Msa0686550:CDS |
| TTACCCTCAAACGATCAGAG+AGG | 0.790654 | 4_4:+51057287 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTTTTAAATTAGCAT+TGG | + | chr4_4:51056461-51056480 | None:intergenic | 10.0% |
| !! | TAAGTATAAGAAAAGTTAAA+AGG | + | chr4_4:51055757-51055776 | None:intergenic | 15.0% |
| !! | ATAAACAATTAAATCTAAAC+AGG | + | chr4_4:51055873-51055892 | None:intergenic | 15.0% |
| !!! | TTTCACTTTTTCTATAAAAA+TGG | + | chr4_4:51056092-51056111 | None:intergenic | 15.0% |
| !!! | TTTTGTATAATCTATTTCTA+AGG | + | chr4_4:51056321-51056340 | None:intergenic | 15.0% |
| !!! | AATTTAATTTTTGGCCTTTT+TGG | - | chr4_4:51055994-51056013 | Msa0686550:CDS | 20.0% |
| !! | ATAGCTTACAAAATAACTTA+CGG | + | chr4_4:51056143-51056162 | None:intergenic | 20.0% |
| !!! | AGTTATTTTGTAAGCTATAT+TGG | - | chr4_4:51056145-51056164 | Msa0686550:intron | 20.0% |
| !!! | ATGGTAAAGCTTTTTTTTTT+TGG | - | chr4_4:51056372-51056391 | Msa0686550:intron | 20.0% |
| !!! | GAAAACAAAGAATTTTCAAT+CGG | + | chr4_4:51056439-51056458 | None:intergenic | 20.0% |
| !!! | AAATTTTTCAGTCTTAGTAT+TGG | - | chr4_4:51056929-51056948 | Msa0686550:intron | 20.0% |
| !! | AAACTAGTAATGAAAATCAT+AGG | + | chr4_4:51057074-51057093 | None:intergenic | 20.0% |
| !! | TGCACAAATTTAAATGATAA+TGG | - | chr4_4:51057521-51057540 | Msa0686550:intron | 20.0% |
| !! | CAATGAAAATAAGAAATCTA+AGG | + | chr4_4:51057573-51057592 | None:intergenic | 20.0% |
| !! | AAATAAACTTAAAATGCACA+AGG | + | chr4_4:51057643-51057662 | None:intergenic | 20.0% |
| !! | ACTTTAATTGTAAAATGTTG+TGG | - | chr4_4:51057733-51057752 | Msa0686550:intron | 20.0% |
| ! | TACAAAGAGATGAAATTCAA+TGG | + | chr4_4:51055611-51055630 | None:intergenic | 25.0% |
| ! | AAAAAGCTGTTAATCCAAAA+AGG | + | chr4_4:51056011-51056030 | None:intergenic | 25.0% |
| ! | CTGATTTAAACAATGTGATT+TGG | - | chr4_4:51056494-51056513 | Msa0686550:intron | 25.0% |
| !!! | TGATTTGGTAGTGATATTAA+GGG | - | chr4_4:51056509-51056528 | Msa0686550:intron | 25.0% |
| !!! | TTTTTTGTCTTTAACAGAAG+TGG | - | chr4_4:51056536-51056555 | Msa0686550:intron | 25.0% |
| ! | CTAAGACTGAAAAATTTAGA+TGG | + | chr4_4:51056926-51056945 | None:intergenic | 25.0% |
| ! | ATACAAGAGAAAATTATGTG+TGG | + | chr4_4:51056967-51056986 | None:intergenic | 25.0% |
| ! | TTTCTCTTGTATTGTTTAAG+CGG | - | chr4_4:51056975-51056994 | Msa0686550:intron | 25.0% |
| ! | TTTCTGTCATATTGTTTAAG+TGG | - | chr4_4:51057035-51057054 | Msa0686550:intron | 25.0% |
| ! | AAAACACAGATAGAACATTA+AGG | + | chr4_4:51057114-51057133 | None:intergenic | 25.0% |
| !! | TTAATGTTCTATCTGTGTTT+TGG | - | chr4_4:51057113-51057132 | Msa0686550:intron | 25.0% |
| !! | ATGTTTTCACAAAGTAAATG+AGG | + | chr4_4:51057276-51057295 | None:intergenic | 25.0% |
| ! | ATGTCTTCATAAAGTAAATG+AGG | - | chr4_4:51057547-51057566 | Msa0686550:intron | 25.0% |
| ! | ATCAATAATGAAATGTCTTG+TGG | - | chr4_4:51057895-51057914 | Msa0686550:intron | 25.0% |
| ! | AACGATATAAAAAGAATCTC+CGG | + | chr4_4:51058155-51058174 | None:intergenic | 25.0% |
| !! | GAATTATTTTCCATACCATT+TGG | - | chr4_4:51058262-51058281 | Msa0686550:CDS | 25.0% |
| !!! | TAGTTTTTTTGTTCATGATC+TGG | - | chr4_4:51058349-51058368 | Msa0686550:intron | 25.0% |
| !! | TATGAGTTACCTATTTTATG+TGG | - | chr4_4:51058382-51058401 | Msa0686550:intron | 25.0% |
| ! | AAAATGTGACCACATAAAAT+AGG | + | chr4_4:51058394-51058413 | None:intergenic | 25.0% |
| !!! | TATGTGGTCACATTTTTTTA+TGG | - | chr4_4:51058398-51058417 | Msa0686550:five_prime_UTR | 25.0% |
| ATGAATTACAGAGATGAGTA+TGG | + | chr4_4:51055641-51055660 | None:intergenic | 30.0% | |
| !!! | CTCTGTAATTCATTTTTTGC+AGG | - | chr4_4:51055648-51055667 | Msa0686550:intron | 30.0% |
| ! | GCTCCTGTGAATTAATTTTA+TGG | - | chr4_4:51055846-51055865 | Msa0686550:three_prime_UTR | 30.0% |
| GGTCCATAAAATTAATTCAC+AGG | + | chr4_4:51055852-51055871 | None:intergenic | 30.0% | |
| !! | AAGTCATTTTCAGAAGTTCT+TGG | - | chr4_4:51055934-51055953 | Msa0686550:exon | 30.0% |
| TTATCTTCCTTAATGCAGTA+TGG | - | chr4_4:51056353-51056372 | Msa0686550:intron | 30.0% | |
| !! | GTGATTTGGTAGTGATATTA+AGG | - | chr4_4:51056508-51056527 | Msa0686550:intron | 30.0% |
| ! | TAATGCCTTTTCTTATGTTG+TGG | - | chr4_4:51056701-51056720 | Msa0686550:intron | 30.0% |
| CTATACCACAACATAAGAAA+AGG | + | chr4_4:51056709-51056728 | None:intergenic | 30.0% | |
| TGCAGTAAAACTCTTAACAT+AGG | + | chr4_4:51056792-51056811 | None:intergenic | 30.0% | |
| AAAATGATTAGCATCAGGAT+AGG | + | chr4_4:51056877-51056896 | None:intergenic | 30.0% | |
| !! | TTTTTCAGTCTTAGTATTGG+TGG | - | chr4_4:51056932-51056951 | Msa0686550:intron | 30.0% |
| AGAACATTAAGGCTAAAAAG+TGG | + | chr4_4:51057103-51057122 | None:intergenic | 30.0% | |
| ! | GTGAATAACTGTGCAATTTT+CGG | + | chr4_4:51057462-51057481 | None:intergenic | 30.0% |
| AAACATCACTATAAATGCAG+AGG | + | chr4_4:51057608-51057627 | None:intergenic | 30.0% | |
| CATGCATTTGGTATTTGTAT+TGG | + | chr4_4:51057837-51057856 | None:intergenic | 30.0% | |
| CAAATATAGTCACATGCATT+TGG | + | chr4_4:51057849-51057868 | None:intergenic | 30.0% | |
| TTGTGGTTTATGCAGATTAA+TGG | - | chr4_4:51057912-51057931 | Msa0686550:intron | 30.0% | |
| TTAAAATCAGTATCACACCT+AGG | + | chr4_4:51058039-51058058 | None:intergenic | 30.0% | |
| !!! | TATGTTCGTTTTTGGAATTG+TGG | - | chr4_4:51058190-51058209 | Msa0686550:intron | 30.0% |
| !!! | GGTTTCACTTTTAGTTCATT+TGG | - | chr4_4:51058300-51058319 | Msa0686550:intron | 30.0% |
| TCTGACAAAACTTATGCAAG+TGG | - | chr4_4:51056233-51056252 | Msa0686550:intron | 35.0% | |
| GTGGATAAAACTTATGCAAG+TGG | - | chr4_4:51056252-51056271 | Msa0686550:intron | 35.0% | |
| CAAAAGATTAAGCGCATGTT+TGG | + | chr4_4:51056298-51056317 | None:intergenic | 35.0% | |
| AGCTTTACCATACTGCATTA+AGG | + | chr4_4:51056363-51056382 | None:intergenic | 35.0% | |
| ! | TTTTGGCAAAATGATTGCTC+TGG | - | chr4_4:51056389-51056408 | Msa0686550:intron | 35.0% |
| ! | GGCTTTTTGAACAATCTCTT+TGG | - | chr4_4:51056410-51056429 | Msa0686550:intron | 35.0% |
| AAAGGAGAAAGTGAACAACA+TGG | - | chr4_4:51056573-51056592 | Msa0686550:intron | 35.0% | |
| TTCAGTTAAGAGCTTGTCAT+AGG | + | chr4_4:51056617-51056636 | None:intergenic | 35.0% | |
| TTAAACCTACGATCTGTCAA+AGG | - | chr4_4:51056826-51056845 | Msa0686550:intron | 35.0% | |
| TAAACCTACGATCTGTCAAA+GGG | - | chr4_4:51056827-51056846 | Msa0686550:intron | 35.0% | |
| CTTGGAAAATGATTAGCATC+AGG | + | chr4_4:51056882-51056901 | None:intergenic | 35.0% | |
| ! | CTGATGCTAATCATTTTCCA+AGG | - | chr4_4:51056880-51056899 | Msa0686550:intron | 35.0% |
| ACCAGAATTTCTGCGATAAA+TGG | - | chr4_4:51057165-51057184 | Msa0686550:intron | 35.0% | |
| AATTTCTGCGATAAATGGCT+TGG | - | chr4_4:51057170-51057189 | Msa0686550:intron | 35.0% | |
| ATTTCTGCGATAAATGGCTT+GGG | - | chr4_4:51057171-51057190 | Msa0686550:intron | 35.0% | |
| GTAGAAATCACGGAACATAT+TGG | - | chr4_4:51057195-51057214 | Msa0686550:intron | 35.0% | |
| TCACAGATGTTGTGTATTTG+TGG | - | chr4_4:51057231-51057250 | Msa0686550:intron | 35.0% | |
| CACAGATGTTGTGTATTTGT+GGG | - | chr4_4:51057232-51057251 | Msa0686550:intron | 35.0% | |
| TCATCTCCTCTCTATCATAA+TGG | + | chr4_4:51057373-51057392 | None:intergenic | 35.0% | |
| ! | ATTTTCGGAAACAGGGAAAA+TGG | + | chr4_4:51057447-51057466 | None:intergenic | 35.0% |
| ! | AGATTAATGGATCACTTGCA+AGG | - | chr4_4:51057925-51057944 | Msa0686550:intron | 35.0% |
| ! | ATAAGAGACTTGATGGCTAA+AGG | - | chr4_4:51057954-51057973 | Msa0686550:intron | 35.0% |
| TGATGGCTAAAGGTTTAATC+AGG | - | chr4_4:51057964-51057983 | Msa0686550:intron | 35.0% | |
| ATAAAAAGAATCTCCGGCTA+TGG | + | chr4_4:51058149-51058168 | None:intergenic | 35.0% | |
| ! | CATCGATCTATGTTCGTTTT+TGG | - | chr4_4:51058182-51058201 | Msa0686550:intron | 35.0% |
| !! | AAGTTGAACTGCTTTTGTGA+TGG | - | chr4_4:51058238-51058257 | Msa0686550:CDS | 35.0% |
| AAATCAGTTGCCAAATGGTA+TGG | + | chr4_4:51058275-51058294 | None:intergenic | 35.0% | |
| ATCAGAAATCAGTTGCCAAA+TGG | + | chr4_4:51058280-51058299 | None:intergenic | 35.0% | |
| ! | ATTTGGCAACTGATTTCTGA+TGG | - | chr4_4:51058279-51058298 | Msa0686550:CDS | 35.0% |
| ! | ATTTGGCAACTGATTTCTGA+TGG | - | chr4_4:51058279-51058298 | Msa0686550:CDS | 35.0% |
| ! | TTTTTGTTCATGATCTGGTC+AGG | - | chr4_4:51058354-51058373 | Msa0686550:intron | 35.0% |
| TCTTTAACAGAAGTGGAGCA+AGG | - | chr4_4:51056543-51056562 | Msa0686550:intron | 40.0% | |
| CTTTAACAGAAGTGGAGCAA+GGG | - | chr4_4:51056544-51056563 | Msa0686550:intron | 40.0% | |
| !! | AACATGGTGCTGTTTGATCA+GGG | - | chr4_4:51056589-51056608 | Msa0686550:intron | 40.0% |
| GGAGTGATGAGCTTGTATTT+GGG | + | chr4_4:51056643-51056662 | None:intergenic | 40.0% | |
| AGGAGTGATGAGCTTGTATT+TGG | + | chr4_4:51056644-51056663 | None:intergenic | 40.0% | |
| AAACCTACGATCTGTCAAAG+GGG | - | chr4_4:51056828-51056847 | Msa0686550:intron | 40.0% | |
| !! | AAGCATTACATGACTAGCCT+TGG | + | chr4_4:51056900-51056919 | None:intergenic | 40.0% |
| !! | AGTCTTAGTATTGGTGGAGT+TGG | - | chr4_4:51056938-51056957 | Msa0686550:intron | 40.0% |
| GCCATTTATCGCAGAAATTC+TGG | + | chr4_4:51057169-51057188 | None:intergenic | 40.0% | |
| ! | GTGGGTGTTTCTGAGAATAT+AGG | - | chr4_4:51057250-51057269 | Msa0686550:intron | 40.0% |
| AGAGACGCACATCTTCATAT+CGG | + | chr4_4:51057341-51057360 | None:intergenic | 40.0% | |
| AGGGAACCATTATGATAGAG+AGG | - | chr4_4:51057364-51057383 | Msa0686550:CDS | 40.0% | |
| AGGAGATGAAATGTTAGCGA+GGG | - | chr4_4:51057384-51057403 | Msa0686550:CDS | 40.0% | |
| ! | CTGTGCAATTTTCGGAAACA+GGG | + | chr4_4:51057454-51057473 | None:intergenic | 40.0% |
| ! | ACTGTGCAATTTTCGGAAAC+AGG | + | chr4_4:51057455-51057474 | None:intergenic | 40.0% |
| CATCACTATAAATGCAGAGG+TGG | + | chr4_4:51057605-51057624 | None:intergenic | 40.0% | |
| ! | TTAATGGATCACTTGCAAGG+AGG | - | chr4_4:51057928-51057947 | Msa0686550:intron | 40.0% |
| ! | TAATGGATCACTTGCAAGGA+GGG | - | chr4_4:51057929-51057948 | Msa0686550:intron | 40.0% |
| GGCTAAAGGTTTAATCAGGT+TGG | - | chr4_4:51057968-51057987 | Msa0686550:intron | 40.0% | |
| AAGTCAGCAGATTTACACCA+GGG | - | chr4_4:51058004-51058023 | Msa0686550:intron | 40.0% | |
| ! | AGTTTTGCTGAATCCATAGC+CGG | - | chr4_4:51058133-51058152 | Msa0686550:intron | 40.0% |
| AGGTATGAGAAGGTCTGAGA+CGG | + | chr4_4:51055552-51055571 | None:intergenic | 45.0% | |
| TCTCAGACCTTCTCATACCT+CGG | - | chr4_4:51055552-51055571 | Msa0686550:three_prime_UTR | 45.0% | |
| ATACCTCGGAGCAGAAATCA+TGG | - | chr4_4:51055566-51055585 | Msa0686550:three_prime_UTR | 45.0% | |
| !!! | TTTTTTGCAGGCACCCAAGA+AGG | - | chr4_4:51055660-51055679 | Msa0686550:intron | 45.0% |
| !! | CAACATGGTGCTGTTTGATC+AGG | - | chr4_4:51056588-51056607 | Msa0686550:intron | 45.0% |
| AAACGATCAGAGAGGACAGA+AGG | + | chr4_4:51056664-51056683 | None:intergenic | 45.0% | |
| TGTCCTCTCTGATCGTTTGA+GGG | - | chr4_4:51056666-51056685 | Msa0686550:intron | 45.0% | |
| TTACCCTCAAACGATCAGAG+AGG | + | chr4_4:51056672-51056691 | None:intergenic | 45.0% | |
| AACCTACGATCTGTCAAAGG+GGG | - | chr4_4:51056829-51056848 | Msa0686550:intron | 45.0% | |
| ! | TGGCTTGGGTGTAGAAATCA+CGG | - | chr4_4:51057185-51057204 | Msa0686550:intron | 45.0% |
| TGAAGATGTGCGTCTCTTGA+AGG | - | chr4_4:51057344-51057363 | Msa0686550:CDS | 45.0% | |
| GAAGATGTGCGTCTCTTGAA+GGG | - | chr4_4:51057345-51057364 | Msa0686550:CDS | 45.0% | |
| GAGGAGATGAAATGTTAGCG+AGG | - | chr4_4:51057383-51057402 | Msa0686550:CDS | 45.0% | |
| ! | AGCGAGGGATGATGCAATTT+TGG | - | chr4_4:51057399-51057418 | Msa0686550:CDS | 45.0% |
| TCTAGTGTGATGCACACCTT+TGG | - | chr4_4:51057789-51057808 | Msa0686550:intron | 45.0% | |
| GTGAATGTGCAAGCAACCAA+AGG | + | chr4_4:51057808-51057827 | None:intergenic | 45.0% | |
| GAGGGCTATAAGAGACTTGA+TGG | - | chr4_4:51057947-51057966 | Msa0686550:intron | 45.0% | |
| CAAGTCAGCAGATTTACACC+AGG | - | chr4_4:51058003-51058022 | Msa0686550:intron | 45.0% | |
| TTGTTCATGATCTGGTCAGG+TGG | - | chr4_4:51058357-51058376 | Msa0686550:intron | 45.0% | |
| TGTTCATGATCTGGTCAGGT+GGG | - | chr4_4:51058358-51058377 | Msa0686550:intron | 45.0% | |
| !!! | AAACAATTAAATTTAATTTT+TGG | - | chr4_4:51055985-51056004 | Msa0686550:CDS | 5.0% |
| TAGGGTTTCATCGTCTCCAC+TGG | - | chr4_4:51055511-51055530 | Msa0686550:three_prime_UTR | 50.0% | |
| ! | TATGAGAAGGTCTGAGACGG+AGG | + | chr4_4:51055549-51055568 | None:intergenic | 50.0% |
| TTCTGCTCCGAGGTATGAGA+AGG | + | chr4_4:51055562-51055581 | None:intergenic | 50.0% | |
| ACACCATGATTTCTGCTCCG+AGG | + | chr4_4:51055572-51055591 | None:intergenic | 50.0% | |
| CGGTGGCAAACAGAAGAAGA+AGG | - | chr4_4:51055720-51055739 | Msa0686550:three_prime_UTR | 50.0% | |
| GTGGAGCAAGGGAAAGCAAA+AGG | - | chr4_4:51056555-51056574 | Msa0686550:intron | 50.0% | |
| CTGTCCTCTCTGATCGTTTG+AGG | - | chr4_4:51056665-51056684 | Msa0686550:intron | 50.0% | |
| AACCCCCTTTGACAGATCGT+AGG | + | chr4_4:51056834-51056853 | None:intergenic | 50.0% | |
| !! | GATTTGGCTGGCTTGGAGGA+AGG | + | chr4_4:51055697-51055716 | None:intergenic | 55.0% |
| TCCTCCAAGCCAGCCAAATC+TGG | - | chr4_4:51055697-51055716 | Msa0686550:three_prime_UTR | 55.0% | |
| TCCAAGCCAGCCAAATCTGG+CGG | - | chr4_4:51055700-51055719 | Msa0686550:three_prime_UTR | 55.0% | |
| CTGTTTGCCACCGCCAGATT+TGG | + | chr4_4:51055713-51055732 | None:intergenic | 55.0% | |
| CACCAGGGCTACAAACACCT+AGG | - | chr4_4:51058019-51058038 | Msa0686550:intron | 55.0% | |
| CACCTAGGTGTTTGTAGCCC+TGG | + | chr4_4:51058024-51058043 | None:intergenic | 55.0% | |
| GGAGGAGGAGCTGCCTTCTT+GGG | + | chr4_4:51055676-51055695 | None:intergenic | 60.0% | |
| AGGAGGAGGAGCTGCCTTCT+TGG | + | chr4_4:51055677-51055696 | None:intergenic | 60.0% | |
| !! | TTGGCTGGCTTGGAGGAAGG+AGG | + | chr4_4:51055694-51055713 | None:intergenic | 60.0% |
| !! | GCCAGATTTGGCTGGCTTGG+AGG | + | chr4_4:51055701-51055720 | None:intergenic | 60.0% |
| ! | ACCGCCAGATTTGGCTGGCT+TGG | + | chr4_4:51055704-51055723 | None:intergenic | 60.0% |
| AAGCCAGCCAAATCTGGCGG+TGG | - | chr4_4:51055703-51055722 | Msa0686550:three_prime_UTR | 60.0% | |
| TTGCCACCGCCAGATTTGGC+TGG | + | chr4_4:51055709-51055728 | None:intergenic | 60.0% | |
| ! | GAGGCGCTAGCTGCTACCAG+TGG | + | chr4_4:51055530-51055549 | None:intergenic | 65.0% |
| !! | GCTGGCTTGGAGGAAGGAGG+AGG | + | chr4_4:51055691-51055710 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 51055504 | 51058474 | 51055504 | ID=Msa0686550;Name=Msa0686550 |
| chr4_4 | mRNA | 51055504 | 51058474 | 51055504 | ID=Msa0686550-mRNA-1;Parent=Msa0686550;Name=Msa0686550-mRNA-1;_AED=0.03;_eAED=0.03;_QI=81|1|1|1|0.75|0.6|5|395|107 |
| chr4_4 | exon | 51055504 | 51055626 | 51055504 | ID=Msa0686550-mRNA-1:exon:13117;Parent=Msa0686550-mRNA-1 |
| chr4_4 | exon | 51055666 | 51056051 | 51055666 | ID=Msa0686550-mRNA-1:exon:13116;Parent=Msa0686550-mRNA-1 |
| chr4_4 | exon | 51057291 | 51057425 | 51057291 | ID=Msa0686550-mRNA-1:exon:13115;Parent=Msa0686550-mRNA-1 |
| chr4_4 | exon | 51058237 | 51058308 | 51058237 | ID=Msa0686550-mRNA-1:exon:13114;Parent=Msa0686550-mRNA-1 |
| chr4_4 | exon | 51058391 | 51058474 | 51058391 | ID=Msa0686550-mRNA-1:exon:13113;Parent=Msa0686550-mRNA-1 |
| chr4_4 | five_prime_UTR | 51058394 | 51058474 | 51058394 | ID=Msa0686550-mRNA-1:five_prime_utr;Parent=Msa0686550-mRNA-1 |
| chr4_4 | CDS | 51058391 | 51058393 | 51058391 | ID=Msa0686550-mRNA-1:cds;Parent=Msa0686550-mRNA-1 |
| chr4_4 | CDS | 51058237 | 51058308 | 51058237 | ID=Msa0686550-mRNA-1:cds;Parent=Msa0686550-mRNA-1 |
| chr4_4 | CDS | 51057291 | 51057425 | 51057291 | ID=Msa0686550-mRNA-1:cds;Parent=Msa0686550-mRNA-1 |
| chr4_4 | CDS | 51055938 | 51056051 | 51055938 | ID=Msa0686550-mRNA-1:cds;Parent=Msa0686550-mRNA-1 |
| chr4_4 | three_prime_UTR | 51055666 | 51055937 | 51055666 | ID=Msa0686550-mRNA-1:three_prime_utr;Parent=Msa0686550-mRNA-1 |
| chr4_4 | three_prime_UTR | 51055504 | 51055626 | 51055504 | ID=Msa0686550-mRNA-1:three_prime_utr;Parent=Msa0686550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
