Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035880 | KEH23791.1 | 85.938 | 192 | 13 | 1 | 1 | 192 | 1 | 178 | 2.96e-107 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035880 | sp|Q94AX3|LTG16_ARATH | 35.294 | 170 | 87 | 5 | 4 | 161 | 33 | 191 | 3.15e-20 | 87.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035880 | A0A072U353 | 85.938 | 192 | 13 | 1 | 1 | 192 | 1 | 178 | 1.41e-107 | 315 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024650 | Msa1035880 | 0.801467 | 8.882384e-49 | -8.615850e-47 |
| Msa0658150 | Msa1035880 | 0.842928 | 1.915651e-58 | -8.615850e-47 |
| Msa0677130 | Msa1035880 | 0.818987 | 1.471414e-52 | -8.615850e-47 |
| Msa0703000 | Msa1035880 | 0.842684 | 2.224393e-58 | -8.615850e-47 |
| Msa0730890 | Msa1035880 | 0.804590 | 2.008312e-49 | -8.615850e-47 |
| Msa0738570 | Msa1035880 | 0.811536 | 6.665624e-51 | -8.615850e-47 |
| Msa0750790 | Msa1035880 | 0.805554 | 1.262276e-49 | -8.615850e-47 |
| Msa0758150 | Msa1035880 | 0.806770 | 6.998702e-50 | -8.615850e-47 |
| Msa0768670 | Msa1035880 | 0.814261 | 1.685909e-51 | -8.615850e-47 |
| Msa0773030 | Msa1035880 | 0.805121 | 1.555182e-49 | -8.615850e-47 |
| Msa0776340 | Msa1035880 | 0.823929 | 1.063137e-53 | -8.615850e-47 |
| Msa0783580 | Msa1035880 | 0.804659 | 1.942567e-49 | -8.615850e-47 |
| Msa0794090 | Msa1035880 | 0.803463 | 3.445254e-49 | -8.615850e-47 |
| Msa0813840 | Msa1035880 | 0.812831 | 3.478349e-51 | -8.615850e-47 |
| Msa0817100 | Msa1035880 | 0.802680 | 5.001866e-49 | -8.615850e-47 |
| Msa0819110 | Msa1035880 | 0.804584 | 2.013463e-49 | -8.615850e-47 |
| Msa0132250 | Msa1035880 | 0.810259 | 1.259599e-50 | -8.615850e-47 |
| Msa0163690 | Msa1035880 | 0.814825 | 1.265089e-51 | -8.615850e-47 |
| Msa0189990 | Msa1035880 | 0.823114 | 1.648663e-53 | -8.615850e-47 |
| Msa0418230 | Msa1035880 | 0.827927 | 1.193736e-54 | -8.615850e-47 |
| Msa0444210 | Msa1035880 | 0.802419 | 5.660461e-49 | -8.615850e-47 |
| Msa0464620 | Msa1035880 | 0.833620 | 4.804317e-56 | -8.615850e-47 |
| Msa0996980 | Msa1035880 | 0.811565 | 6.569125e-51 | -8.615850e-47 |
| Msa1006030 | Msa1035880 | 0.804335 | 2.269826e-49 | -8.615850e-47 |
| Msa1035880 | Msa1040330 | 0.823375 | 1.433007e-53 | -8.615850e-47 |
| Msa1035880 | Msa1087200 | 0.811417 | 7.073745e-51 | -8.615850e-47 |
| Msa1035880 | Msa1163300 | 0.995512 | 5.186611e-217 | -8.615850e-47 |
| Msa1035880 | Msa1187750 | 0.804405 | 2.194728e-49 | -8.615850e-47 |
| Msa1035880 | Msa1211940 | 0.813920 | 2.004782e-51 | -8.615850e-47 |
| Msa1035880 | Msa1344450 | 0.806319 | 8.713981e-50 | -8.615850e-47 |
| Msa1035880 | Msa1349420 | 0.821410 | 4.098420e-53 | -8.615850e-47 |
| Msa1035880 | Msa1376070 | 0.804496 | 2.100747e-49 | -8.615850e-47 |
| Msa1035880 | Msa1376880 | 0.803552 | 3.300876e-49 | -8.615850e-47 |
| Msa1035880 | Msa1384130 | 0.835202 | 1.924473e-56 | -8.615850e-47 |
| Msa1035880 | Msa1395080 | 0.842666 | 2.249865e-58 | -8.615850e-47 |
| Msa1035880 | Msa1421130 | 0.807730 | 4.381551e-50 | -8.615850e-47 |
| Msa0247780 | Msa1035880 | 0.845578 | 3.720316e-59 | -8.615850e-47 |
| Msa0325260 | Msa1035880 | 0.839183 | 1.844891e-57 | -8.615850e-47 |
| Msa0491770 | Msa1035880 | 0.806865 | 6.683829e-50 | -8.615850e-47 |
| Msa0510050 | Msa1035880 | 0.801074 | 1.068696e-48 | -8.615850e-47 |
| Msa0531040 | Msa1035880 | 0.802831 | 4.654254e-49 | -8.615850e-47 |
| Msa0538650 | Msa1035880 | 0.810323 | 1.220540e-50 | -8.615850e-47 |
| Msa0566490 | Msa1035880 | 0.841049 | 6.014079e-58 | -8.615850e-47 |
| Msa0847140 | Msa1035880 | 0.806268 | 8.931652e-50 | -8.615850e-47 |
| Msa0853080 | Msa1035880 | 0.814315 | 1.640561e-51 | -8.615850e-47 |
| Msa0854380 | Msa1035880 | 0.805193 | 1.502661e-49 | -8.615850e-47 |
| Msa0859230 | Msa1035880 | 0.808404 | 3.149567e-50 | -8.615850e-47 |
| Msa0896920 | Msa1035880 | 0.812115 | 4.987795e-51 | -8.615850e-47 |
| Msa0910590 | Msa1035880 | 0.805499 | 1.296215e-49 | -8.615850e-47 |
| Msa0948430 | Msa1035880 | 0.810116 | 1.352830e-50 | -8.615850e-47 |
| Msa0950090 | Msa1035880 | 0.805981 | 1.026604e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035880 | MtrunA17_Chr7g0260071 | 85.561 | 187 | 13 | 1 | 6 | 192 | 41 | 213 | 1.48e-107 | 307 |
| Msa1035880 | MtrunA17_Chr1g0185311 | 52.941 | 153 | 61 | 7 | 1 | 149 | 36 | 181 | 2.66e-36 | 125 |
| Msa1035880 | MtrunA17_Chr1g0205171 | 47.423 | 97 | 45 | 2 | 2 | 98 | 37 | 127 | 3.82e-23 | 92.0 |
| Msa1035880 | MtrunA17_Chr5g0394991 | 42.857 | 105 | 59 | 1 | 1 | 105 | 36 | 139 | 1.94e-21 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035880 | AT2G48140.1 | 35.294 | 170 | 87 | 5 | 4 | 161 | 33 | 191 | 3.21e-21 | 87.0 |
| Msa1035880 | AT2G48140.2 | 46.429 | 84 | 45 | 0 | 4 | 87 | 33 | 116 | 4.69e-20 | 82.0 |
| Msa1035880 | AT1G05450.2 | 42.574 | 101 | 54 | 2 | 4 | 104 | 39 | 135 | 1.17e-17 | 77.8 |
| Msa1035880 | AT3G22620.1 | 33.511 | 188 | 97 | 7 | 4 | 187 | 35 | 198 | 1.41e-11 | 61.2 |
Find 48 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGCAATTGTAATGGTTTA+TGG | 0.164215 | 7_1:+71930705 | Msa1035880:CDS |
| GTCTTTGATGGGCACTAATA+TGG | 0.225608 | 7_1:+71928332 | Msa1035880:CDS |
| CTACTTGTTGTGATTCATTA+AGG | 0.267679 | 7_1:+71928310 | Msa1035880:CDS |
| ATTGCAAGAACTTGGTTAAT+AGG | 0.287987 | 7_1:-71928402 | None:intergenic |
| TAAACTACCTTGAGAACTTA+AGG | 0.310158 | 7_1:-71929576 | None:intergenic |
| TGATTCATTAAGGTCTTTGA+TGG | 0.371159 | 7_1:+71928320 | Msa1035880:CDS |
| TAGAGCTGGTAAGGGAGAAC+TGG | 0.380694 | 7_1:-71928589 | None:intergenic |
| CCTTGTGCTAACATCATAAC+AGG | 0.384512 | 7_1:+71928258 | Msa1035880:CDS |
| AAACTACCTTGAGAACTTAA+GGG | 0.393516 | 7_1:-71929575 | None:intergenic |
| ATAACAGGAAGCACTAATAA+TGG | 0.421549 | 7_1:+71928273 | Msa1035880:CDS |
| TGTTTGATTCAATACCTGTT+GGG | 0.422953 | 7_1:-71929523 | None:intergenic |
| GGTGCTTCTGCAGCTTCCAT+TGG | 0.431162 | 7_1:-71930585 | None:intergenic |
| GAACTTGGTTAATAGGTAGT+TGG | 0.432984 | 7_1:-71928395 | None:intergenic |
| GAGCACTTGAAGGGAGAGTT+GGG | 0.442034 | 7_1:-71929547 | None:intergenic |
| GAGCATTGGAAGACAACATA+AGG | 0.445627 | 7_1:-71928365 | None:intergenic |
| AAGGGAGTTGGAGCACTTGA+AGG | 0.448487 | 7_1:-71929557 | None:intergenic |
| TATAATTCTTGATGTTTCAG+TGG | 0.450285 | 7_1:-71930607 | None:intergenic |
| CATAATCATAGCAATTGTAA+TGG | 0.451027 | 7_1:+71930698 | Msa1035880:CDS |
| ATACATGCCTAGAGCTGGTA+AGG | 0.456573 | 7_1:-71928598 | None:intergenic |
| CATATATGAGAATCTGCAAT+TGG | 0.460310 | 7_1:+71930536 | Msa1035880:CDS |
| GAAGGAAGAGGAGTCAAAAC+TGG | 0.462367 | 7_1:-71930630 | None:intergenic |
| GAATCACAACAAGTAGTTGA+TGG | 0.473600 | 7_1:-71928303 | None:intergenic |
| GGAGCACTTGAAGGGAGAGT+TGG | 0.475069 | 7_1:-71929548 | None:intergenic |
| AAAGAGACATTGCAAGAACT+TGG | 0.476462 | 7_1:-71928410 | None:intergenic |
| TCTGCAATTGGCAGAGGCAT+TGG | 0.478623 | 7_1:+71930548 | Msa1035880:CDS |
| CCTTGAGAACTTAAGGGAGT+TGG | 0.494659 | 7_1:-71929569 | None:intergenic |
| GGAGGAGACGCTGAAGGAAG+AGG | 0.510430 | 7_1:-71930642 | None:intergenic |
| GGTGAGAAGGAATGATAAGA+CGG | 0.517723 | 7_1:-71930663 | None:intergenic |
| GCTTCCATTGGTGCTGATGA+TGG | 0.518630 | 7_1:-71930573 | None:intergenic |
| CTGTTTGATTCAATACCTGT+TGG | 0.523473 | 7_1:-71929524 | None:intergenic |
| ATAATTCTTGATGTTTCAGT+GGG | 0.531983 | 7_1:-71930606 | None:intergenic |
| GATTCATTAAGGTCTTTGAT+GGG | 0.535229 | 7_1:+71928321 | Msa1035880:CDS |
| TAGTTGGAAAATTTGAGCAT+TGG | 0.538312 | 7_1:-71928379 | None:intergenic |
| AGTTCTCCCTTACCAGCTCT+AGG | 0.539411 | 7_1:+71928591 | Msa1035880:CDS |
| AATCAATACATGCCTAGAGC+TGG | 0.556293 | 7_1:-71928603 | None:intergenic |
| TGAGAATCTGCAATTGGCAG+AGG | 0.559664 | 7_1:+71930542 | Msa1035880:CDS |
| TCTCAAGCATGTAATATCAA+AGG | 0.562021 | 7_1:+71928432 | Msa1035880:CDS |
| GAATAATGCAGAAGGTGAGA+AGG | 0.571988 | 7_1:-71930676 | None:intergenic |
| AGGGAGTTGGAGCACTTGAA+GGG | 0.572850 | 7_1:-71929556 | None:intergenic |
| GGTACCATCATCAGCACCAA+TGG | 0.575486 | 7_1:+71930569 | Msa1035880:CDS |
| CCAACTCCCTTAAGTTCTCA+AGG | 0.579224 | 7_1:+71929569 | Msa1035880:CDS |
| GGAGCTTCTCTTCAGTGCAA+AGG | 0.609225 | 7_1:+71928453 | Msa1035880:CDS |
| GAGAAGGAATGATAAGACGG+AGG | 0.610857 | 7_1:-71930660 | None:intergenic |
| CCTGTTATGATGTTAGCACA+AGG | 0.620375 | 7_1:-71928258 | None:intergenic |
| AGAGCTGGTAAGGGAGAACT+GGG | 0.639589 | 7_1:-71928588 | None:intergenic |
| TACATGCCTAGAGCTGGTAA+GGG | 0.659627 | 7_1:-71928597 | None:intergenic |
| ATGATTATGAATAATGCAGA+AGG | 0.660048 | 7_1:-71930684 | None:intergenic |
| TAAGACGGAGGAGACGCTGA+AGG | 0.661699 | 7_1:-71930648 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTATAAAATCTGAAATA+TGG | - | chr7_1:71929652-71929671 | None:intergenic | 10.0% |
| !!! | TTAGAATATTTTAGTTTTTA+TGG | + | chr7_1:71929914-71929933 | Msa1035880:intron | 10.0% |
| !!! | TTATTTTATTTTTTTACGAA+AGG | + | chr7_1:71930048-71930067 | Msa1035880:intron | 10.0% |
| !!! | TTTGTAAATTTTTAAAAGTT+AGG | - | chr7_1:71930294-71930313 | None:intergenic | 10.0% |
| !! | ATATGTATTAAAAAAACATG+AGG | - | chr7_1:71929118-71929137 | None:intergenic | 15.0% |
| !!! | CTTAGACTTTTTAAAATATT+GGG | + | chr7_1:71929779-71929798 | Msa1035880:intron | 15.0% |
| !!! | TTTTGAAAAATAACATAACA+TGG | - | chr7_1:71930149-71930168 | None:intergenic | 15.0% |
| !! | TTAAGAAAACAATTTCATTT+CGG | - | chr7_1:71930318-71930337 | None:intergenic | 15.0% |
| !!! | AAATGAAATTGTTTTCTTAA+CGG | + | chr7_1:71930318-71930337 | Msa1035880:intron | 15.0% |
| !!! | ATTTTTGAAATTTTTTGACT+TGG | - | chr7_1:71930440-71930459 | None:intergenic | 15.0% |
| !!! | TGACAGTAAAATAAAGTTTT+GGG | - | chr7_1:71928658-71928677 | None:intergenic | 20.0% |
| !!! | TTGACAGTAAAATAAAGTTT+TGG | - | chr7_1:71928659-71928678 | None:intergenic | 20.0% |
| !! | TTTCATCATTTCTTTATTCT+AGG | - | chr7_1:71928757-71928776 | None:intergenic | 20.0% |
| !!! | TAACCACTTTTAATCTAAAT+AGG | - | chr7_1:71929053-71929072 | None:intergenic | 20.0% |
| !!! | TAAAAATCAAGTTGTACAAT+TGG | + | chr7_1:71929271-71929290 | Msa1035880:intron | 20.0% |
| !!! | ATAAAATCTGAAATATGGTA+GGG | - | chr7_1:71929647-71929666 | None:intergenic | 20.0% |
| !!! | TATAAAATCTGAAATATGGT+AGG | - | chr7_1:71929648-71929667 | None:intergenic | 20.0% |
| !!! | GCTTAGACTTTTTAAAATAT+TGG | + | chr7_1:71929778-71929797 | Msa1035880:intron | 20.0% |
| !! | AAATATTGGGTTAAATTTCA+AGG | + | chr7_1:71929792-71929811 | Msa1035880:intron | 20.0% |
| !!! | CTTGATAAGTTTTAATGTTT+TGG | + | chr7_1:71929990-71930009 | Msa1035880:intron | 20.0% |
| !! | TAACCTTATGCATATTTATA+GGG | - | chr7_1:71930175-71930194 | None:intergenic | 20.0% |
| !!! | TTGTGTATACTTTAAAACTT+GGG | - | chr7_1:71930248-71930267 | None:intergenic | 20.0% |
| !!! | ATTGTGTATACTTTAAAACT+TGG | - | chr7_1:71930249-71930268 | None:intergenic | 20.0% |
| !! | TAAGAAAACAATTTCATTTC+GGG | - | chr7_1:71930317-71930336 | None:intergenic | 20.0% |
| ! | TTCTAACGTTAGGTAATATT+TGG | + | chr7_1:71928856-71928875 | Msa1035880:intron | 25.0% |
| ! | ACTTATTCTATACTTTGGAT+GGG | + | chr7_1:71928893-71928912 | Msa1035880:intron | 25.0% |
| ! | ATTTATGTAAGGGTAATGTT+TGG | - | chr7_1:71929012-71929031 | None:intergenic | 25.0% |
| ! | TAACCACACTATTTATGTAA+GGG | - | chr7_1:71929022-71929041 | None:intergenic | 25.0% |
| ! | ATAACCACACTATTTATGTA+AGG | - | chr7_1:71929023-71929042 | None:intergenic | 25.0% |
| ! | CTTCCTATTTAGATTAAAAG+TGG | + | chr7_1:71929047-71929066 | Msa1035880:intron | 25.0% |
| ! | AAATAAACAAGAACATCATG+AGG | - | chr7_1:71929199-71929218 | None:intergenic | 25.0% |
| !!! | ATTGTGTTGATTTGTTGAAA+CGG | + | chr7_1:71929485-71929504 | Msa1035880:intron | 25.0% |
| ! | AAAAACATCCTACAACATTT+CGG | + | chr7_1:71929692-71929711 | Msa1035880:intron | 25.0% |
| !! | TCTAAAAATCAATCAGCTTT+TGG | - | chr7_1:71929899-71929918 | None:intergenic | 25.0% |
| !!! | GGAGATTATTTGTTTTTGAA+AGG | + | chr7_1:71930011-71930030 | Msa1035880:intron | 25.0% |
| !!! | TTATTTGTTTTTGAAAGGAG+AGG | + | chr7_1:71930016-71930035 | Msa1035880:intron | 25.0% |
| ! | CTAACCTTATGCATATTTAT+AGG | - | chr7_1:71930176-71930195 | None:intergenic | 25.0% |
| ! | ATAATTCTTGATGTTTCAGT+GGG | - | chr7_1:71930609-71930628 | None:intergenic | 25.0% |
| ! | TATAATTCTTGATGTTTCAG+TGG | - | chr7_1:71930610-71930629 | None:intergenic | 25.0% |
| ! | ATGATTATGAATAATGCAGA+AGG | - | chr7_1:71930687-71930706 | None:intergenic | 25.0% |
| ! | CATAATCATAGCAATTGTAA+TGG | + | chr7_1:71930698-71930717 | Msa1035880:CDS | 25.0% |
| ! | ATAGCAATTGTAATGGTTTA+TGG | + | chr7_1:71930705-71930724 | Msa1035880:CDS | 25.0% |
| !! | ATAACAGGAAGCACTAATAA+TGG | + | chr7_1:71928273-71928292 | Msa1035880:CDS | 30.0% |
| !! | CTACTTGTTGTGATTCATTA+AGG | + | chr7_1:71928310-71928329 | Msa1035880:CDS | 30.0% |
| TGATTCATTAAGGTCTTTGA+TGG | + | chr7_1:71928320-71928339 | Msa1035880:CDS | 30.0% | |
| GATTCATTAAGGTCTTTGAT+GGG | + | chr7_1:71928321-71928340 | Msa1035880:CDS | 30.0% | |
| TAGTTGGAAAATTTGAGCAT+TGG | - | chr7_1:71928382-71928401 | None:intergenic | 30.0% | |
| ATTGCAAGAACTTGGTTAAT+AGG | - | chr7_1:71928405-71928424 | None:intergenic | 30.0% | |
| TCTCAAGCATGTAATATCAA+AGG | + | chr7_1:71928432-71928451 | Msa1035880:CDS | 30.0% | |
| ACAACTATGACTATTAGTAG+TGG | + | chr7_1:71928692-71928711 | Msa1035880:intron | 30.0% | |
| TATTAGTAGTGGTGTTTGTT+GGG | + | chr7_1:71928703-71928722 | Msa1035880:intron | 30.0% | |
| CATCCACTTATTCTATACTT+TGG | + | chr7_1:71928888-71928907 | Msa1035880:intron | 30.0% | |
| CATCCAAAGTATAGAATAAG+TGG | - | chr7_1:71928894-71928913 | None:intergenic | 30.0% | |
| CACTTATTCTATACTTTGGA+TGG | + | chr7_1:71928892-71928911 | Msa1035880:intron | 30.0% | |
| ATAAAGAGAAAGTGAGAATG+TGG | + | chr7_1:71928946-71928965 | Msa1035880:intron | 30.0% | |
| TAAAGAGAAAGTGAGAATGT+GGG | + | chr7_1:71928947-71928966 | Msa1035880:intron | 30.0% | |
| TTACCCTTACATAAATAGTG+TGG | + | chr7_1:71929016-71929035 | Msa1035880:intron | 30.0% | |
| TGTTTGATTCAATACCTGTT+GGG | - | chr7_1:71929526-71929545 | None:intergenic | 30.0% | |
| AAACTACCTTGAGAACTTAA+GGG | - | chr7_1:71929578-71929597 | None:intergenic | 30.0% | |
| TAAACTACCTTGAGAACTTA+AGG | - | chr7_1:71929579-71929598 | None:intergenic | 30.0% | |
| TATGAAATCCGAAATGTTGT+AGG | - | chr7_1:71929703-71929722 | None:intergenic | 30.0% | |
| ATTTCAAGGAGCAATACAAT+TGG | + | chr7_1:71929806-71929825 | Msa1035880:intron | 30.0% | |
| CTTGTCAGCTAAAAATATGA+AGG | + | chr7_1:71929854-71929873 | Msa1035880:intron | 30.0% | |
| ! | CTTGTTATACAAATGATGCA+AGG | + | chr7_1:71929962-71929981 | Msa1035880:intron | 30.0% |
| CATCCCTATAAATATGCATA+AGG | + | chr7_1:71930169-71930188 | Msa1035880:intron | 30.0% | |
| AGTGATTTGAGAATAACTAG+TGG | - | chr7_1:71930383-71930402 | None:intergenic | 30.0% | |
| AAGTTAATCTAACATGCCTT+TGG | + | chr7_1:71930477-71930496 | Msa1035880:intron | 30.0% | |
| ! | AGTTTTTGAATCTGTTCCAA+AGG | - | chr7_1:71930496-71930515 | None:intergenic | 30.0% |
| TGGAACAGATTCAAAAACTT+TGG | + | chr7_1:71930497-71930516 | Msa1035880:intron | 30.0% | |
| CATATATGAGAATCTGCAAT+TGG | + | chr7_1:71930536-71930555 | Msa1035880:CDS | 30.0% | |
| GAATCACAACAAGTAGTTGA+TGG | - | chr7_1:71928306-71928325 | None:intergenic | 35.0% | |
| GAACTTGGTTAATAGGTAGT+TGG | - | chr7_1:71928398-71928417 | None:intergenic | 35.0% | |
| AAAGAGACATTGCAAGAACT+TGG | - | chr7_1:71928413-71928432 | None:intergenic | 35.0% | |
| CTATTAGTAGTGGTGTTTGT+TGG | + | chr7_1:71928702-71928721 | Msa1035880:intron | 35.0% | |
| TGTGAGTTTCTTCTAACGTT+AGG | + | chr7_1:71928846-71928865 | Msa1035880:intron | 35.0% | |
| TATTCTATACTTTGGATGGG+AGG | + | chr7_1:71928896-71928915 | Msa1035880:intron | 35.0% | |
| ATTCTATACTTTGGATGGGA+GGG | + | chr7_1:71928897-71928916 | Msa1035880:intron | 35.0% | |
| ATGATCAAGAATGCAAACGA+TGG | - | chr7_1:71929249-71929268 | None:intergenic | 35.0% | |
| TGTACAATTGGTTGTTGTGT+TGG | + | chr7_1:71929283-71929302 | Msa1035880:intron | 35.0% | |
| GCTATAAAAAGCTTGTGTGT+GGG | - | chr7_1:71929394-71929413 | None:intergenic | 35.0% | |
| TGCTATAAAAAGCTTGTGTG+TGG | - | chr7_1:71929395-71929414 | None:intergenic | 35.0% | |
| ! | TTGTTGAAACGGCTATGTTT+TGG | + | chr7_1:71929496-71929515 | Msa1035880:intron | 35.0% |
| CTGTTTGATTCAATACCTGT+TGG | - | chr7_1:71929527-71929546 | None:intergenic | 35.0% | |
| AGATCCTAATTACGGTCTTA+CGG | - | chr7_1:71930353-71930372 | None:intergenic | 35.0% | |
| GAGGTCAAAGATCCTAATTA+CGG | - | chr7_1:71930361-71930380 | None:intergenic | 35.0% | |
| GATTTGAGAATAACTAGTGG+AGG | - | chr7_1:71930380-71930399 | None:intergenic | 35.0% | |
| CCTGTTATGATGTTAGCACA+AGG | - | chr7_1:71928261-71928280 | None:intergenic | 40.0% | |
| CCTTGTGCTAACATCATAAC+AGG | + | chr7_1:71928258-71928277 | Msa1035880:CDS | 40.0% | |
| ! | GTCTTTGATGGGCACTAATA+TGG | + | chr7_1:71928332-71928351 | Msa1035880:CDS | 40.0% |
| !! | GAGCATTGGAAGACAACATA+AGG | - | chr7_1:71928368-71928387 | None:intergenic | 40.0% |
| AATCAATACATGCCTAGAGC+TGG | - | chr7_1:71928606-71928625 | None:intergenic | 40.0% | |
| AGAATGTGGGATCAATTCTG+AGG | + | chr7_1:71928960-71928979 | Msa1035880:intron | 40.0% | |
| AAGAGCTCACAAATGACCAA+AGG | + | chr7_1:71929355-71929374 | Msa1035880:intron | 40.0% | |
| AGAGCTCACAAATGACCAAA+GGG | + | chr7_1:71929356-71929375 | Msa1035880:intron | 40.0% | |
| ! | GATTTTCTTTTCCCACCTTC+CGG | + | chr7_1:71929608-71929627 | Msa1035880:intron | 40.0% |
| ! | ATTTTCTTTTCCCACCTTCC+GGG | + | chr7_1:71929609-71929628 | Msa1035880:intron | 40.0% |
| TCTACCGTAAGACCGTAATT+AGG | + | chr7_1:71930346-71930365 | Msa1035880:intron | 40.0% | |
| GGTGAGAAGGAATGATAAGA+CGG | - | chr7_1:71930666-71930685 | None:intergenic | 40.0% | |
| GAATAATGCAGAAGGTGAGA+AGG | - | chr7_1:71930679-71930698 | None:intergenic | 40.0% | |
| TACATGCCTAGAGCTGGTAA+GGG | - | chr7_1:71928600-71928619 | None:intergenic | 45.0% | |
| ATACATGCCTAGAGCTGGTA+AGG | - | chr7_1:71928601-71928620 | None:intergenic | 45.0% | |
| GAGCTCACAAATGACCAAAG+GGG | + | chr7_1:71929357-71929376 | Msa1035880:intron | 45.0% | |
| GGGTAACTAACAATCCCCTT+TGG | - | chr7_1:71929374-71929393 | None:intergenic | 45.0% | |
| !!! | TGAAACGGCTATGTTTTGGC+AGG | + | chr7_1:71929500-71929519 | Msa1035880:intron | 45.0% |
| CCTTGAGAACTTAAGGGAGT+TGG | - | chr7_1:71929572-71929591 | None:intergenic | 45.0% | |
| CCAACTCCCTTAAGTTCTCA+AGG | + | chr7_1:71929569-71929588 | Msa1035880:CDS | 45.0% | |
| ! | TTTTCTTTTCCCACCTTCCG+GGG | + | chr7_1:71929610-71929629 | Msa1035880:intron | 45.0% |
| CGGATTTCATAATCCGAACC+AGG | + | chr7_1:71929712-71929731 | Msa1035880:intron | 45.0% | |
| ATAATCCGAACCAGGTGAGA+AGG | + | chr7_1:71929720-71929739 | Msa1035880:intron | 45.0% | |
| TAATCCGAACCAGGTGAGAA+GGG | + | chr7_1:71929721-71929740 | Msa1035880:intron | 45.0% | |
| TGAGAATCTGCAATTGGCAG+AGG | + | chr7_1:71930542-71930561 | Msa1035880:CDS | 45.0% | |
| GAAGGAAGAGGAGTCAAAAC+TGG | - | chr7_1:71930633-71930652 | None:intergenic | 45.0% | |
| GAGAAGGAATGATAAGACGG+AGG | - | chr7_1:71930663-71930682 | None:intergenic | 45.0% | |
| GGAGCTTCTCTTCAGTGCAA+AGG | + | chr7_1:71928453-71928472 | Msa1035880:CDS | 50.0% | |
| AGAGCTGGTAAGGGAGAACT+GGG | - | chr7_1:71928591-71928610 | None:intergenic | 50.0% | |
| TAGAGCTGGTAAGGGAGAAC+TGG | - | chr7_1:71928592-71928611 | None:intergenic | 50.0% | |
| AGTTCTCCCTTACCAGCTCT+AGG | + | chr7_1:71928591-71928610 | Msa1035880:CDS | 50.0% | |
| !! | GTGGGATCAATTCTGAGGTG+TGG | + | chr7_1:71928965-71928984 | Msa1035880:intron | 50.0% |
| !!! | TATGTTTTGGCAGGCCCAAC+AGG | + | chr7_1:71929509-71929528 | Msa1035880:intron | 50.0% |
| GAGCACTTGAAGGGAGAGTT+GGG | - | chr7_1:71929550-71929569 | None:intergenic | 50.0% | |
| ! | AGGGAGTTGGAGCACTTGAA+GGG | - | chr7_1:71929559-71929578 | None:intergenic | 50.0% |
| ! | AAGGGAGTTGGAGCACTTGA+AGG | - | chr7_1:71929560-71929579 | None:intergenic | 50.0% |
| ATTGAGAAACCCCGGAAGGT+GGG | - | chr7_1:71929622-71929641 | None:intergenic | 50.0% | |
| GTAGGGTGATTGAGAAACCC+CGG | - | chr7_1:71929630-71929649 | None:intergenic | 50.0% | |
| ! | TCTGCAATTGGCAGAGGCAT+TGG | + | chr7_1:71930548-71930567 | Msa1035880:CDS | 50.0% |
| GGTACCATCATCAGCACCAA+TGG | + | chr7_1:71930569-71930588 | Msa1035880:CDS | 50.0% | |
| !! | GCTTCCATTGGTGCTGATGA+TGG | - | chr7_1:71930576-71930595 | None:intergenic | 50.0% |
| ! | GGAGCACTTGAAGGGAGAGT+TGG | - | chr7_1:71929551-71929570 | None:intergenic | 55.0% |
| GATTGAGAAACCCCGGAAGG+TGG | - | chr7_1:71929623-71929642 | None:intergenic | 55.0% | |
| GGTGATTGAGAAACCCCGGA+AGG | - | chr7_1:71929626-71929645 | None:intergenic | 55.0% | |
| ! | CTTTTCCCACCCTTCTCACC+TGG | - | chr7_1:71929733-71929752 | None:intergenic | 55.0% |
| GGTGCTTCTGCAGCTTCCAT+TGG | - | chr7_1:71930588-71930607 | None:intergenic | 55.0% | |
| TAAGACGGAGGAGACGCTGA+AGG | - | chr7_1:71930651-71930670 | None:intergenic | 55.0% | |
| TCCGAACCAGGTGAGAAGGG+TGG | + | chr7_1:71929724-71929743 | Msa1035880:intron | 60.0% | |
| CCCACCCTTCTCACCTGGTT+CGG | - | chr7_1:71929728-71929747 | None:intergenic | 60.0% | |
| CCGAACCAGGTGAGAAGGGT+GGG | + | chr7_1:71929725-71929744 | Msa1035880:intron | 60.0% | |
| GGAGGAGACGCTGAAGGAAG+AGG | - | chr7_1:71930645-71930664 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 71928237 | 71930737 | 71928237 | ID=Msa1035880;Name=Msa1035880 |
| chr7_1 | mRNA | 71928237 | 71930737 | 71928237 | ID=Msa1035880-mRNA-1;Parent=Msa1035880;Name=Msa1035880-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|0.75|1|1|4|0|193 |
| chr7_1 | exon | 71928237 | 71928474 | 71928237 | ID=Msa1035880-mRNA-1:exon:17457;Parent=Msa1035880-mRNA-1 |
| chr7_1 | exon | 71928571 | 71928612 | 71928571 | ID=Msa1035880-mRNA-1:exon:17458;Parent=Msa1035880-mRNA-1 |
| chr7_1 | exon | 71929522 | 71929590 | 71929522 | ID=Msa1035880-mRNA-1:exon:17459;Parent=Msa1035880-mRNA-1 |
| chr7_1 | exon | 71930505 | 71930737 | 71930505 | ID=Msa1035880-mRNA-1:exon:17460;Parent=Msa1035880-mRNA-1 |
| chr7_1 | CDS | 71928237 | 71928474 | 71928237 | ID=Msa1035880-mRNA-1:cds;Parent=Msa1035880-mRNA-1 |
| chr7_1 | CDS | 71928571 | 71928612 | 71928571 | ID=Msa1035880-mRNA-1:cds;Parent=Msa1035880-mRNA-1 |
| chr7_1 | CDS | 71929522 | 71929590 | 71929522 | ID=Msa1035880-mRNA-1:cds;Parent=Msa1035880-mRNA-1 |
| chr7_1 | CDS | 71930505 | 71930737 | 71930505 | ID=Msa1035880-mRNA-1:cds;Parent=Msa1035880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
