AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1087200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1087200 MtrunA17_Chr5g0394991 87.736 212 6 1 1 192 1 212 1.70e-125 352
Msa1087200 MtrunA17_Chr1g0205171 49.541 218 83 4 1 192 1 217 2.02e-58 182
Msa1087200 MtrunA17_Chr1g0185311 46.809 141 68 7 1 137 1 138 2.58e-30 109
Msa1087200 MtrunA17_Chr7g0260071 40.876 137 77 3 8 142 7 141 1.21e-16 74.7
Msa1087200 MtrunA17_Chr5g0395001 34.959 123 69 6 1 121 1 114 5.39e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1087200 AT3G22620.1 42.574 202 94 6 10 192 5 203 3.24e-35 123
Msa1087200 AT1G05450.2 44.751 181 74 5 26 188 27 199 1.37e-34 121
Msa1087200 AT2G48140.2 54.310 116 47 3 12 124 7 119 2.63e-34 118
Msa1087200 AT2G48140.1 41.294 201 88 7 12 190 7 199 6.11e-34 119
Msa1087200 AT3G22600.1 34.815 135 69 6 1 125 1 126 2.60e-12 62.8
Msa1087200 AT2G48130.2 32.124 193 101 10 4 184 3 177 3.87e-12 62.4
Msa1087200 AT2G48130.6 32.124 193 101 10 4 184 3 177 3.87e-12 62.4
Msa1087200 AT2G48130.4 32.124 193 101 10 4 184 3 177 3.87e-12 62.4
Msa1087200 AT2G48130.5 32.124 193 101 10 4 184 3 177 3.87e-12 62.4
Msa1087200 AT2G48130.1 32.124 193 101 10 4 184 3 177 3.87e-12 62.4
Msa1087200 AT2G48130.3 32.124 193 101 10 4 184 3 177 3.87e-12 62.4

Find 74 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATTGTTTGGACCCATAT+TGG 0.216171 7_2:-87810113 Msa1087200:three_prime_UTR
AAACCAATACCACCCCAATA+TGG 0.274848 7_2:+87810099 None:intergenic
GACCCATATTGGGGTGGTAT+TGG 0.297176 7_2:-87810102 Msa1087200:three_prime_UTR
AAATTGTTTGGACCCATATT+GGG 0.299454 7_2:-87810112 Msa1087200:three_prime_UTR
CACAACAATACAAATGTCTT+TGG 0.304309 7_2:+87810073 None:intergenic
CAGATCAGAGCGGCCACTTC+CGG 0.318856 7_2:+87810312 None:intergenic
TAGTCTCCTACTATCTGTTT+TGG 0.329233 7_2:-87810260 Msa1087200:CDS
TTAAAACACTACTAGGTTAC+TGG 0.335706 7_2:-87810220 Msa1087200:exon
ATGTTTATGTTATAGAGTTT+TGG 0.356717 7_2:+87811344 None:intergenic
CTCTATAACATAAACATAGA+TGG 0.357921 7_2:-87811338 Msa1087200:exon
AATATGTTTGGCTATATTGC+AGG 0.361101 7_2:-87810148 Msa1087200:three_prime_UTR
GGCGTTGCAGATGGAATATC+AGG 0.363139 7_2:+87810334 None:intergenic
ATAGGTAGTTGCAATATGTT+TGG 0.375312 7_2:-87810160 Msa1087200:three_prime_UTR
GGGTTCGCTGATGGAGATAA+TGG 0.387464 7_2:+87810355 None:intergenic
ATAGCTAAGGTTCTATTGAT+TGG 0.389392 7_2:+87811052 None:intergenic
TTCTATATTAAAACACTACT+AGG 0.400865 7_2:-87810227 Msa1087200:exon
GGCTCACCGCTTCCTGCTCC+AGG 0.422121 7_2:-87810854 Msa1087200:intron
GATCTGACTCCATCATCTGC+TGG 0.433930 7_2:-87810295 Msa1087200:CDS
GAAACTCAAGCAAGGGCTAA+TGG 0.441100 7_2:+87811201 None:intergenic
CCTCGTGCTTGTAACTTGCC+TGG 0.444455 7_2:-87811022 Msa1087200:CDS
AACCAATACCACCCCAATAT+GGG 0.447031 7_2:+87810100 None:intergenic
CCACTTCCGGGCGTTGCAGA+TGG 0.451493 7_2:+87810325 None:intergenic
CTATTGATTGGTAATGCAAA+AGG 0.452479 7_2:+87811064 None:intergenic
GTTAGCCGTGGCTTCGATCA+TGG 0.462490 7_2:-87811281 Msa1087200:CDS
TGATACATTAAAATCAATAG+AGG 0.466281 7_2:+87810188 None:intergenic
CTTACCATTGATATGTTACA+TGG 0.470781 7_2:+87811229 None:intergenic
CAATGACCAAAACAGATAGT+AGG 0.505531 7_2:+87810254 None:intergenic
GATAATGGATTGGTTGTCTC+AGG 0.511804 7_2:+87810370 None:intergenic
TTTGTTGTGTTTAAGAGTGA+AGG 0.513809 7_2:+87811390 None:intergenic
ATCCTTGCTTCCACTTGTGA+GGG 0.516520 7_2:+87811117 None:intergenic
CCATCTGCAACGCCCGGAAG+TGG 0.516819 7_2:-87810325 Msa1087200:CDS
GATGATGATCCAGCAGATGA+TGG 0.519019 7_2:+87810286 None:intergenic
AATCCTTGCTTCCACTTGTG+AGG 0.527769 7_2:+87811116 None:intergenic
GGAATATCAGGGTTCGCTGA+TGG 0.537454 7_2:+87810346 None:intergenic
AGAGAAGGTGTCACTGGTGA+GGG 0.537488 7_2:+87810403 None:intergenic
CCACGGCTAACACCACAGTT+AGG 0.542248 7_2:+87811293 None:intergenic
CGCTGATGGAGATAATGGAT+TGG 0.542515 7_2:+87810360 None:intergenic
GATATTCCATCTGCAACGCC+CGG 0.544541 7_2:-87810331 Msa1087200:CDS
CTCACAAATAGTAGTGGCAA+TGG 0.545441 7_2:-87811178 Msa1087200:CDS
CGTCGCGGTTTACCTGGAGC+AGG 0.545706 7_2:+87810842 None:intergenic
GACCCTCACAAGTGGAAGCA+AGG 0.549047 7_2:-87811119 Msa1087200:CDS
CATTGCCACTACTATTTGTG+AGG 0.549899 7_2:+87811179 None:intergenic
GTCGTGATTTGAGCGTAGGC+TGG 0.551456 7_2:+87811253 None:intergenic
GTTTGGCTATATTGCAGGGA+GGG 0.557553 7_2:-87810143 Msa1087200:three_prime_UTR
TGTATGTGTCTTATTGCCAC+TGG 0.565408 7_2:-87811094 Msa1087200:CDS
GGATTGGTTGTCTCAGGCTG+TGG 0.565431 7_2:+87810376 None:intergenic
GGTTTACCTGGAGCAGGAAG+CGG 0.566105 7_2:+87810848 None:intergenic
GACGCCATGTAACATATCAA+TGG 0.568392 7_2:-87811233 Msa1087200:CDS
AATTGTTTGGACCCATATTG+GGG 0.569765 7_2:-87810111 Msa1087200:three_prime_UTR
TTGCATTGAAGTGGAACACC+AGG 0.570114 7_2:+87811004 None:intergenic
GCAGCAATCAGCAGTGGGTG+AGG 0.573593 7_2:+87811153 None:intergenic
TGGCGTCGTGATTTGAGCGT+AGG 0.576088 7_2:+87811249 None:intergenic
GCAATCAAGACCCTCACAAG+TGG 0.578959 7_2:-87811127 Msa1087200:CDS
CAGAGAAGGTGTCACTGGTG+AGG 0.580166 7_2:+87810402 None:intergenic
GTATTGTTGTGTATTATGTG+TGG 0.581727 7_2:-87810061 Msa1087200:three_prime_UTR
ATATGTTTGGCTATATTGCA+GGG 0.593280 7_2:-87810147 Msa1087200:three_prime_UTR
AGTTTCCTCACAAATAGTAG+TGG 0.606601 7_2:-87811184 Msa1087200:CDS
TGCAGCCATGATCGAAGCCA+CGG 0.611380 7_2:+87811276 None:intergenic
CCTAACTGTGGTGTTAGCCG+TGG 0.613375 7_2:-87811293 Msa1087200:CDS
GGTGACAGAGAAGGTGTCAC+TGG 0.619445 7_2:+87810397 None:intergenic
TGTTTGGACCCATATTGGGG+TGG 0.623606 7_2:-87810108 Msa1087200:three_prime_UTR
TTGTGAGGAAACTCAAGCAA+GGG 0.634401 7_2:+87811194 None:intergenic
ACGAGGAAGAGAGATAGCTA+AGG 0.635982 7_2:+87811039 None:intergenic
GCATTGCAGCAATCAGCAGT+GGG 0.640694 7_2:+87811148 None:intergenic
TTTGTGAGGAAACTCAAGCA+AGG 0.643831 7_2:+87811193 None:intergenic
GTCTCTCTACCGCCTAACTG+TGG 0.648382 7_2:-87811305 Msa1087200:CDS
TCAGGCTGTGGTGACAGAGA+AGG 0.649180 7_2:+87810388 None:intergenic
TGCATTGCAGCAATCAGCAG+TGG 0.654060 7_2:+87811147 None:intergenic
GCGTTGCAGATGGAATATCA+GGG 0.683696 7_2:+87810335 None:intergenic
CCAGGCAAGTTACAAGCACG+AGG 0.683819 7_2:+87811022 None:intergenic
TGCAAAAGGAACATTGCCAG+TGG 0.683851 7_2:+87811078 None:intergenic
CGGCTAACACCACAGTTAGG+CGG 0.689758 7_2:+87811296 None:intergenic
TGTTTGGCTATATTGCAGGG+AGG 0.699618 7_2:-87810144 Msa1087200:three_prime_UTR
ATGATGGAGTCAGATCAGAG+CGG 0.809779 7_2:+87810302 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAAAATAATAGTAATTTTT+AGG + chr7_2:87810644-87810663 None:intergenic 10.0%
!!! TTTTAATGTATCAAATTAAT+AGG - chr7_2:87811267-87811286 Msa1087200:CDS 10.0%
!!! GAAAAATAATAGTAATTTTT+AGG + chr7_2:87810644-87810663 None:intergenic 10.0%
!!! TTTTAATGTATCAAATTAAT+AGG - chr7_2:87811267-87811286 Msa1087200:CDS 10.0%
!! AAAATAAAGAATGAAGATTT+AGG + chr7_2:87810478-87810497 None:intergenic 15.0%
!!! ATAAATATGGTTTTAAATTG+CGG + chr7_2:87810942-87810961 None:intergenic 15.0%
!! AAAATAAAGAATGAAGATTT+AGG + chr7_2:87810478-87810497 None:intergenic 15.0%
!!! ATAAATATGGTTTTAAATTG+CGG + chr7_2:87810942-87810961 None:intergenic 15.0%
!!! TTATAGAGTTTTGGTTTTTT+GGG + chr7_2:87810095-87810114 None:intergenic 20.0%
!!! ATGTTTATGTTATAGAGTTT+TGG + chr7_2:87810104-87810123 None:intergenic 20.0%
!! TTAGTGATCAACTATAAATA+TGG + chr7_2:87810955-87810974 None:intergenic 20.0%
!! TTCTATATTAAAACACTACT+AGG - chr7_2:87811218-87811237 Msa1087200:CDS 20.0%
!! TGATACATTAAAATCAATAG+AGG + chr7_2:87811260-87811279 None:intergenic 20.0%
!!! TTATAGAGTTTTGGTTTTTT+GGG + chr7_2:87810095-87810114 None:intergenic 20.0%
!!! ATGTTTATGTTATAGAGTTT+TGG + chr7_2:87810104-87810123 None:intergenic 20.0%
!! TTAGTGATCAACTATAAATA+TGG + chr7_2:87810955-87810974 None:intergenic 20.0%
!! TTCTATATTAAAACACTACT+AGG - chr7_2:87811218-87811237 Msa1087200:CDS 20.0%
!! TGATACATTAAAATCAATAG+AGG + chr7_2:87811260-87811279 None:intergenic 20.0%
!!! TATAGAGTTTTGGTTTTTTG+GGG + chr7_2:87810094-87810113 None:intergenic 25.0%
!!! GTTATAGAGTTTTGGTTTTT+TGG + chr7_2:87810096-87810115 None:intergenic 25.0%
! CTCTATAACATAAACATAGA+TGG - chr7_2:87810107-87810126 Msa1087200:three_prime_UTR 25.0%
! AGAGTAATTGACAAATAGAA+TGG + chr7_2:87810540-87810559 None:intergenic 25.0%
!!! TCATTTTGACTTATATTGAC+AGG - chr7_2:87810684-87810703 Msa1087200:intron 25.0%
!!! GTGAAAAATTGTTTTTGATG+CGG - chr7_2:87810842-87810861 Msa1087200:intron 25.0%
!!! TATAGAGTTTTGGTTTTTTG+GGG + chr7_2:87810094-87810113 None:intergenic 25.0%
!!! GTTATAGAGTTTTGGTTTTT+TGG + chr7_2:87810096-87810115 None:intergenic 25.0%
! CTCTATAACATAAACATAGA+TGG - chr7_2:87810107-87810126 Msa1087200:three_prime_UTR 25.0%
! AGAGTAATTGACAAATAGAA+TGG + chr7_2:87810540-87810559 None:intergenic 25.0%
!!! TCATTTTGACTTATATTGAC+AGG - chr7_2:87810684-87810703 Msa1087200:intron 25.0%
!!! GTGAAAAATTGTTTTTGATG+CGG - chr7_2:87810842-87810861 Msa1087200:intron 25.0%
! TTTGTTGTGTTTAAGAGTGA+AGG + chr7_2:87810058-87810077 None:intergenic 30.0%
CTTACCATTGATATGTTACA+TGG + chr7_2:87810219-87810238 None:intergenic 30.0%
!! CTATTGATTGGTAATGCAAA+AGG + chr7_2:87810384-87810403 None:intergenic 30.0%
ATAGCTAAGGTTCTATTGAT+TGG + chr7_2:87810396-87810415 None:intergenic 30.0%
CTCAAGGTACATATTACTTA+CGG - chr7_2:87810760-87810779 Msa1087200:intron 30.0%
!!! TCACCTTTTTTTCATTGAAC+AGG - chr7_2:87811006-87811025 Msa1087200:CDS 30.0%
GAACCTGTTCAATGAAAAAA+AGG + chr7_2:87811012-87811031 None:intergenic 30.0%
TTAAAACACTACTAGGTTAC+TGG - chr7_2:87811225-87811244 Msa1087200:CDS 30.0%
ATAGGTAGTTGCAATATGTT+TGG - chr7_2:87811285-87811304 Msa1087200:CDS 30.0%
AATATGTTTGGCTATATTGC+AGG - chr7_2:87811297-87811316 Msa1087200:CDS 30.0%
ATATGTTTGGCTATATTGCA+GGG - chr7_2:87811298-87811317 Msa1087200:CDS 30.0%
AAATTGTTTGGACCCATATT+GGG - chr7_2:87811333-87811352 Msa1087200:exon 30.0%
CACAACAATACAAATGTCTT+TGG + chr7_2:87811375-87811394 None:intergenic 30.0%
GTATTGTTGTGTATTATGTG+TGG - chr7_2:87811384-87811403 Msa1087200:five_prime_UTR 30.0%
! TTTGTTGTGTTTAAGAGTGA+AGG + chr7_2:87810058-87810077 None:intergenic 30.0%
CTTACCATTGATATGTTACA+TGG + chr7_2:87810219-87810238 None:intergenic 30.0%
!! CTATTGATTGGTAATGCAAA+AGG + chr7_2:87810384-87810403 None:intergenic 30.0%
ATAGCTAAGGTTCTATTGAT+TGG + chr7_2:87810396-87810415 None:intergenic 30.0%
CTCAAGGTACATATTACTTA+CGG - chr7_2:87810760-87810779 Msa1087200:intron 30.0%
!!! TCACCTTTTTTTCATTGAAC+AGG - chr7_2:87811006-87811025 Msa1087200:CDS 30.0%
GAACCTGTTCAATGAAAAAA+AGG + chr7_2:87811012-87811031 None:intergenic 30.0%
TTAAAACACTACTAGGTTAC+TGG - chr7_2:87811225-87811244 Msa1087200:CDS 30.0%
ATAGGTAGTTGCAATATGTT+TGG - chr7_2:87811285-87811304 Msa1087200:CDS 30.0%
AATATGTTTGGCTATATTGC+AGG - chr7_2:87811297-87811316 Msa1087200:CDS 30.0%
ATATGTTTGGCTATATTGCA+GGG - chr7_2:87811298-87811317 Msa1087200:CDS 30.0%
AAATTGTTTGGACCCATATT+GGG - chr7_2:87811333-87811352 Msa1087200:exon 30.0%
CACAACAATACAAATGTCTT+TGG + chr7_2:87811375-87811394 None:intergenic 30.0%
GTATTGTTGTGTATTATGTG+TGG - chr7_2:87811384-87811403 Msa1087200:five_prime_UTR 30.0%
AGTTTCCTCACAAATAGTAG+TGG - chr7_2:87810261-87810280 Msa1087200:CDS 35.0%
!! AGAGTACTTTTGCATTGAAG+TGG + chr7_2:87810453-87810472 None:intergenic 35.0%
TTGACTTATATTGACAGGAC+CGG - chr7_2:87810689-87810708 Msa1087200:intron 35.0%
CGTAAGTAATATGTACCTTG+AGG + chr7_2:87810762-87810781 None:intergenic 35.0%
GTACATATTACTTACGGTCA+AGG - chr7_2:87810766-87810785 Msa1087200:intron 35.0%
CTTCTGTAACCTTTACATTG+TGG - chr7_2:87810897-87810916 Msa1087200:intron 35.0%
! TAGTCTCCTACTATCTGTTT+TGG - chr7_2:87811185-87811204 Msa1087200:CDS 35.0%
CAATGACCAAAACAGATAGT+AGG + chr7_2:87811194-87811213 None:intergenic 35.0%
!!! CTACTATCTGTTTTGGTCAT+TGG - chr7_2:87811192-87811211 Msa1087200:CDS 35.0%
! AGGGTTTTGCTCAAATTGTT+TGG - chr7_2:87811321-87811340 Msa1087200:CDS 35.0%
CAAATTGTTTGGACCCATAT+TGG - chr7_2:87811332-87811351 Msa1087200:exon 35.0%
AATTGTTTGGACCCATATTG+GGG - chr7_2:87811334-87811353 Msa1087200:exon 35.0%
AGTTTCCTCACAAATAGTAG+TGG - chr7_2:87810261-87810280 Msa1087200:CDS 35.0%
!! AGAGTACTTTTGCATTGAAG+TGG + chr7_2:87810453-87810472 None:intergenic 35.0%
TTGACTTATATTGACAGGAC+CGG - chr7_2:87810689-87810708 Msa1087200:intron 35.0%
CGTAAGTAATATGTACCTTG+AGG + chr7_2:87810762-87810781 None:intergenic 35.0%
GTACATATTACTTACGGTCA+AGG - chr7_2:87810766-87810785 Msa1087200:intron 35.0%
CTTCTGTAACCTTTACATTG+TGG - chr7_2:87810897-87810916 Msa1087200:intron 35.0%
! TAGTCTCCTACTATCTGTTT+TGG - chr7_2:87811185-87811204 Msa1087200:CDS 35.0%
CAATGACCAAAACAGATAGT+AGG + chr7_2:87811194-87811213 None:intergenic 35.0%
!!! CTACTATCTGTTTTGGTCAT+TGG - chr7_2:87811192-87811211 Msa1087200:CDS 35.0%
! AGGGTTTTGCTCAAATTGTT+TGG - chr7_2:87811321-87811340 Msa1087200:CDS 35.0%
CAAATTGTTTGGACCCATAT+TGG - chr7_2:87811332-87811351 Msa1087200:exon 35.0%
AATTGTTTGGACCCATATTG+GGG - chr7_2:87811334-87811353 Msa1087200:exon 35.0%
GACGCCATGTAACATATCAA+TGG - chr7_2:87810212-87810231 Msa1087200:exon 40.0%
TTGTGAGGAAACTCAAGCAA+GGG + chr7_2:87810254-87810273 None:intergenic 40.0%
TTTGTGAGGAAACTCAAGCA+AGG + chr7_2:87810255-87810274 None:intergenic 40.0%
CATTGCCACTACTATTTGTG+AGG + chr7_2:87810269-87810288 None:intergenic 40.0%
CTCACAAATAGTAGTGGCAA+TGG - chr7_2:87810267-87810286 Msa1087200:CDS 40.0%
! TGTATGTGTCTTATTGCCAC+TGG - chr7_2:87810351-87810370 Msa1087200:CDS 40.0%
!! TTTGTTGTTCTCTGCAGCTT+CGG - chr7_2:87810569-87810588 Msa1087200:intron 40.0%
! TAAGAGATGGTGTCAATGCA+GGG + chr7_2:87810737-87810756 None:intergenic 40.0%
! AAGGTTCTAACTTGTAGTCG+CGG - chr7_2:87810785-87810804 Msa1087200:intron 40.0%
!! GATAATGGATTGGTTGTCTC+AGG + chr7_2:87811078-87811097 None:intergenic 40.0%
AACCAATACCACCCCAATAT+GGG + chr7_2:87811348-87811367 None:intergenic 40.0%
AAACCAATACCACCCCAATA+TGG + chr7_2:87811349-87811368 None:intergenic 40.0%
GACGCCATGTAACATATCAA+TGG - chr7_2:87810212-87810231 Msa1087200:exon 40.0%
TTGTGAGGAAACTCAAGCAA+GGG + chr7_2:87810254-87810273 None:intergenic 40.0%
TTTGTGAGGAAACTCAAGCA+AGG + chr7_2:87810255-87810274 None:intergenic 40.0%
CATTGCCACTACTATTTGTG+AGG + chr7_2:87810269-87810288 None:intergenic 40.0%
CTCACAAATAGTAGTGGCAA+TGG - chr7_2:87810267-87810286 Msa1087200:CDS 40.0%
! TGTATGTGTCTTATTGCCAC+TGG - chr7_2:87810351-87810370 Msa1087200:CDS 40.0%
!! TTTGTTGTTCTCTGCAGCTT+CGG - chr7_2:87810569-87810588 Msa1087200:intron 40.0%
! TAAGAGATGGTGTCAATGCA+GGG + chr7_2:87810737-87810756 None:intergenic 40.0%
! AAGGTTCTAACTTGTAGTCG+CGG - chr7_2:87810785-87810804 Msa1087200:intron 40.0%
!! GATAATGGATTGGTTGTCTC+AGG + chr7_2:87811078-87811097 None:intergenic 40.0%
AACCAATACCACCCCAATAT+GGG + chr7_2:87811348-87811367 None:intergenic 40.0%
AAACCAATACCACCCCAATA+TGG + chr7_2:87811349-87811368 None:intergenic 40.0%
GAAACTCAAGCAAGGGCTAA+TGG + chr7_2:87810247-87810266 None:intergenic 45.0%
ATCCTTGCTTCCACTTGTGA+GGG + chr7_2:87810331-87810350 None:intergenic 45.0%
AATCCTTGCTTCCACTTGTG+AGG + chr7_2:87810332-87810351 None:intergenic 45.0%
TGCAAAAGGAACATTGCCAG+TGG + chr7_2:87810370-87810389 None:intergenic 45.0%
ACGAGGAAGAGAGATAGCTA+AGG + chr7_2:87810409-87810428 None:intergenic 45.0%
TTGCATTGAAGTGGAACACC+AGG + chr7_2:87810444-87810463 None:intergenic 45.0%
! TTGTTGTTCTCTGCAGCTTC+GGG - chr7_2:87810570-87810589 Msa1087200:intron 45.0%
!! CATAATAGAGTGTTGCGTCG+CGG + chr7_2:87810621-87810640 None:intergenic 45.0%
! AAGAGATGGTGTCAATGCAG+GGG + chr7_2:87810736-87810755 None:intergenic 45.0%
! CTAAGAGATGGTGTCAATGC+AGG + chr7_2:87810738-87810757 None:intergenic 45.0%
ACACCATCTCTTAGTCCTCA+AGG - chr7_2:87810744-87810763 Msa1087200:intron 45.0%
GTACCTTGAGGACTAAGAGA+TGG + chr7_2:87810750-87810769 None:intergenic 45.0%
! TTTTGATGCGGCCACAATTG+TGG - chr7_2:87810854-87810873 Msa1087200:intron 45.0%
!! CGCTGATGGAGATAATGGAT+TGG + chr7_2:87811088-87811107 None:intergenic 45.0%
GCGTTGCAGATGGAATATCA+GGG + chr7_2:87811113-87811132 None:intergenic 45.0%
! ATGATGGAGTCAGATCAGAG+CGG + chr7_2:87811146-87811165 None:intergenic 45.0%
GATGATGATCCAGCAGATGA+TGG + chr7_2:87811162-87811181 None:intergenic 45.0%
TGTTTGGCTATATTGCAGGG+AGG - chr7_2:87811301-87811320 Msa1087200:CDS 45.0%
GTTTGGCTATATTGCAGGGA+GGG - chr7_2:87811302-87811321 Msa1087200:CDS 45.0%
GAAACTCAAGCAAGGGCTAA+TGG + chr7_2:87810247-87810266 None:intergenic 45.0%
ATCCTTGCTTCCACTTGTGA+GGG + chr7_2:87810331-87810350 None:intergenic 45.0%
AATCCTTGCTTCCACTTGTG+AGG + chr7_2:87810332-87810351 None:intergenic 45.0%
TGCAAAAGGAACATTGCCAG+TGG + chr7_2:87810370-87810389 None:intergenic 45.0%
ACGAGGAAGAGAGATAGCTA+AGG + chr7_2:87810409-87810428 None:intergenic 45.0%
TTGCATTGAAGTGGAACACC+AGG + chr7_2:87810444-87810463 None:intergenic 45.0%
! TTGTTGTTCTCTGCAGCTTC+GGG - chr7_2:87810570-87810589 Msa1087200:intron 45.0%
!! CATAATAGAGTGTTGCGTCG+CGG + chr7_2:87810621-87810640 None:intergenic 45.0%
! AAGAGATGGTGTCAATGCAG+GGG + chr7_2:87810736-87810755 None:intergenic 45.0%
! CTAAGAGATGGTGTCAATGC+AGG + chr7_2:87810738-87810757 None:intergenic 45.0%
ACACCATCTCTTAGTCCTCA+AGG - chr7_2:87810744-87810763 Msa1087200:intron 45.0%
GTACCTTGAGGACTAAGAGA+TGG + chr7_2:87810750-87810769 None:intergenic 45.0%
! TTTTGATGCGGCCACAATTG+TGG - chr7_2:87810854-87810873 Msa1087200:intron 45.0%
!! CGCTGATGGAGATAATGGAT+TGG + chr7_2:87811088-87811107 None:intergenic 45.0%
GCGTTGCAGATGGAATATCA+GGG + chr7_2:87811113-87811132 None:intergenic 45.0%
! ATGATGGAGTCAGATCAGAG+CGG + chr7_2:87811146-87811165 None:intergenic 45.0%
GATGATGATCCAGCAGATGA+TGG + chr7_2:87811162-87811181 None:intergenic 45.0%
TGTTTGGCTATATTGCAGGG+AGG - chr7_2:87811301-87811320 Msa1087200:CDS 45.0%
GTTTGGCTATATTGCAGGGA+GGG - chr7_2:87811302-87811321 Msa1087200:CDS 45.0%
GCATTGCAGCAATCAGCAGT+GGG + chr7_2:87810300-87810319 None:intergenic 50.0%
TGCATTGCAGCAATCAGCAG+TGG + chr7_2:87810301-87810320 None:intergenic 50.0%
GCAATCAAGACCCTCACAAG+TGG - chr7_2:87810318-87810337 Msa1087200:CDS 50.0%
GTCAATGCAGGGGAAAGAGA+TGG + chr7_2:87810726-87810745 None:intergenic 50.0%
CTAGAGCTCGACCACAATTG+TGG + chr7_2:87810868-87810887 None:intergenic 50.0%
CTACTGCGGCCACAATGTAA+AGG + chr7_2:87810909-87810928 None:intergenic 50.0%
!! AGAGAAGGTGTCACTGGTGA+GGG + chr7_2:87811045-87811064 None:intergenic 50.0%
GGGTTCGCTGATGGAGATAA+TGG + chr7_2:87811093-87811112 None:intergenic 50.0%
GGAATATCAGGGTTCGCTGA+TGG + chr7_2:87811102-87811121 None:intergenic 50.0%
GGCGTTGCAGATGGAATATC+AGG + chr7_2:87811114-87811133 None:intergenic 50.0%
GATATTCCATCTGCAACGCC+CGG - chr7_2:87811114-87811133 Msa1087200:CDS 50.0%
GATCTGACTCCATCATCTGC+TGG - chr7_2:87811150-87811169 Msa1087200:CDS 50.0%
TGTTTGGACCCATATTGGGG+TGG - chr7_2:87811337-87811356 Msa1087200:exon 50.0%
GACCCATATTGGGGTGGTAT+TGG - chr7_2:87811343-87811362 Msa1087200:five_prime_UTR 50.0%
GCATTGCAGCAATCAGCAGT+GGG + chr7_2:87810300-87810319 None:intergenic 50.0%
TGCATTGCAGCAATCAGCAG+TGG + chr7_2:87810301-87810320 None:intergenic 50.0%
GCAATCAAGACCCTCACAAG+TGG - chr7_2:87810318-87810337 Msa1087200:CDS 50.0%
GTCAATGCAGGGGAAAGAGA+TGG + chr7_2:87810726-87810745 None:intergenic 50.0%
CTAGAGCTCGACCACAATTG+TGG + chr7_2:87810868-87810887 None:intergenic 50.0%
CTACTGCGGCCACAATGTAA+AGG + chr7_2:87810909-87810928 None:intergenic 50.0%
!! AGAGAAGGTGTCACTGGTGA+GGG + chr7_2:87811045-87811064 None:intergenic 50.0%
GGGTTCGCTGATGGAGATAA+TGG + chr7_2:87811093-87811112 None:intergenic 50.0%
GGAATATCAGGGTTCGCTGA+TGG + chr7_2:87811102-87811121 None:intergenic 50.0%
GGCGTTGCAGATGGAATATC+AGG + chr7_2:87811114-87811133 None:intergenic 50.0%
GATATTCCATCTGCAACGCC+CGG - chr7_2:87811114-87811133 Msa1087200:CDS 50.0%
GATCTGACTCCATCATCTGC+TGG - chr7_2:87811150-87811169 Msa1087200:CDS 50.0%
TGTTTGGACCCATATTGGGG+TGG - chr7_2:87811337-87811356 Msa1087200:exon 50.0%
GACCCATATTGGGGTGGTAT+TGG - chr7_2:87811343-87811362 Msa1087200:five_prime_UTR 50.0%
GTCTCTCTACCGCCTAACTG+TGG - chr7_2:87810140-87810159 Msa1087200:three_prime_UTR 55.0%
CGGCTAACACCACAGTTAGG+CGG + chr7_2:87810152-87810171 None:intergenic 55.0%
CCACGGCTAACACCACAGTT+AGG + chr7_2:87810155-87810174 None:intergenic 55.0%
! CCTAACTGTGGTGTTAGCCG+TGG - chr7_2:87810152-87810171 Msa1087200:three_prime_UTR 55.0%
GTTAGCCGTGGCTTCGATCA+TGG - chr7_2:87810164-87810183 Msa1087200:three_prime_UTR 55.0%
TGCAGCCATGATCGAAGCCA+CGG + chr7_2:87810172-87810191 None:intergenic 55.0%
GTCGTGATTTGAGCGTAGGC+TGG + chr7_2:87810195-87810214 None:intergenic 55.0%
TGGCGTCGTGATTTGAGCGT+AGG + chr7_2:87810199-87810218 None:intergenic 55.0%
GACCCTCACAAGTGGAAGCA+AGG - chr7_2:87810326-87810345 Msa1087200:CDS 55.0%
CCAGGCAAGTTACAAGCACG+AGG + chr7_2:87810426-87810445 None:intergenic 55.0%
! CCTCGTGCTTGTAACTTGCC+TGG - chr7_2:87810423-87810442 Msa1087200:intron 55.0%
GGTTTACCTGGAGCAGGAAG+CGG + chr7_2:87810600-87810619 None:intergenic 55.0%
TTGACAGGACCGGCGTCTTT+CGG - chr7_2:87810699-87810718 Msa1087200:intron 55.0%
! CTAACTTGTAGTCGCGGTCG+TGG - chr7_2:87810791-87810810 Msa1087200:intron 55.0%
GCGGTCAGCAACTACTACTG+CGG + chr7_2:87810923-87810942 None:intergenic 55.0%
!! CAGAGAAGGTGTCACTGGTG+AGG + chr7_2:87811046-87811065 None:intergenic 55.0%
!! GGTGACAGAGAAGGTGTCAC+TGG + chr7_2:87811051-87811070 None:intergenic 55.0%
TCAGGCTGTGGTGACAGAGA+AGG + chr7_2:87811060-87811079 None:intergenic 55.0%
!! GGATTGGTTGTCTCAGGCTG+TGG + chr7_2:87811072-87811091 None:intergenic 55.0%
GTCTCTCTACCGCCTAACTG+TGG - chr7_2:87810140-87810159 Msa1087200:three_prime_UTR 55.0%
CGGCTAACACCACAGTTAGG+CGG + chr7_2:87810152-87810171 None:intergenic 55.0%
CCACGGCTAACACCACAGTT+AGG + chr7_2:87810155-87810174 None:intergenic 55.0%
! CCTAACTGTGGTGTTAGCCG+TGG - chr7_2:87810152-87810171 Msa1087200:three_prime_UTR 55.0%
GTTAGCCGTGGCTTCGATCA+TGG - chr7_2:87810164-87810183 Msa1087200:three_prime_UTR 55.0%
TGCAGCCATGATCGAAGCCA+CGG + chr7_2:87810172-87810191 None:intergenic 55.0%
GTCGTGATTTGAGCGTAGGC+TGG + chr7_2:87810195-87810214 None:intergenic 55.0%
TGGCGTCGTGATTTGAGCGT+AGG + chr7_2:87810199-87810218 None:intergenic 55.0%
GACCCTCACAAGTGGAAGCA+AGG - chr7_2:87810326-87810345 Msa1087200:CDS 55.0%
CCAGGCAAGTTACAAGCACG+AGG + chr7_2:87810426-87810445 None:intergenic 55.0%
! CCTCGTGCTTGTAACTTGCC+TGG - chr7_2:87810423-87810442 Msa1087200:intron 55.0%
GGTTTACCTGGAGCAGGAAG+CGG + chr7_2:87810600-87810619 None:intergenic 55.0%
TTGACAGGACCGGCGTCTTT+CGG - chr7_2:87810699-87810718 Msa1087200:intron 55.0%
! CTAACTTGTAGTCGCGGTCG+TGG - chr7_2:87810791-87810810 Msa1087200:intron 55.0%
GCGGTCAGCAACTACTACTG+CGG + chr7_2:87810923-87810942 None:intergenic 55.0%
!! CAGAGAAGGTGTCACTGGTG+AGG + chr7_2:87811046-87811065 None:intergenic 55.0%
!! GGTGACAGAGAAGGTGTCAC+TGG + chr7_2:87811051-87811070 None:intergenic 55.0%
TCAGGCTGTGGTGACAGAGA+AGG + chr7_2:87811060-87811079 None:intergenic 55.0%
!! GGATTGGTTGTCTCAGGCTG+TGG + chr7_2:87811072-87811091 None:intergenic 55.0%
GCAGCAATCAGCAGTGGGTG+AGG + chr7_2:87810295-87810314 None:intergenic 60.0%
GTGTTGCGTCGCGGTTTACC+TGG + chr7_2:87810612-87810631 None:intergenic 60.0%
TGACAGGACCGGCGTCTTTC+GGG - chr7_2:87810700-87810719 Msa1087200:intron 60.0%
AGAGATGGCCCGAAAGACGC+CGG + chr7_2:87810711-87810730 None:intergenic 60.0%
AGATCAGAGCGGCCACTTCC+GGG + chr7_2:87811135-87811154 None:intergenic 60.0%
CAGATCAGAGCGGCCACTTC+CGG + chr7_2:87811136-87811155 None:intergenic 60.0%
GCAGCAATCAGCAGTGGGTG+AGG + chr7_2:87810295-87810314 None:intergenic 60.0%
GTGTTGCGTCGCGGTTTACC+TGG + chr7_2:87810612-87810631 None:intergenic 60.0%
TGACAGGACCGGCGTCTTTC+GGG - chr7_2:87810700-87810719 Msa1087200:intron 60.0%
AGAGATGGCCCGAAAGACGC+CGG + chr7_2:87810711-87810730 None:intergenic 60.0%
AGATCAGAGCGGCCACTTCC+GGG + chr7_2:87811135-87811154 None:intergenic 60.0%
CAGATCAGAGCGGCCACTTC+CGG + chr7_2:87811136-87811155 None:intergenic 60.0%
CGTCGCGGTTTACCTGGAGC+AGG + chr7_2:87810606-87810625 None:intergenic 65.0%
! CCACTTCCGGGCGTTGCAGA+TGG + chr7_2:87811123-87811142 None:intergenic 65.0%
CCATCTGCAACGCCCGGAAG+TGG - chr7_2:87811120-87811139 Msa1087200:CDS 65.0%
CGTCGCGGTTTACCTGGAGC+AGG + chr7_2:87810606-87810625 None:intergenic 65.0%
! CCACTTCCGGGCGTTGCAGA+TGG + chr7_2:87811123-87811142 None:intergenic 65.0%
CCATCTGCAACGCCCGGAAG+TGG - chr7_2:87811120-87811139 Msa1087200:CDS 65.0%
GGCTCACCGCTTCCTGCTCC+AGG - chr7_2:87810591-87810610 Msa1087200:intron 70.0%
GGCTCACCGCTTCCTGCTCC+AGG - chr7_2:87810591-87810610 Msa1087200:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 87810034 87811433 87810034 ID=Msa1087200;Name=Msa1087200
chr7_2 mRNA 87810034 87811433 87810034 ID=Msa1087200-mRNA-1;Parent=Msa1087200;Name=Msa1087200-mRNA-1;_AED=0.12;_eAED=0.12;_QI=92|0.5|1|1|1|1|3|194|192
chr7_2 exon 87810034 87810439 87810034 ID=Msa1087200-mRNA-1:exon:24032;Parent=Msa1087200-mRNA-1
chr7_2 exon 87810855 87810881 87810855 ID=Msa1087200-mRNA-1:exon:24031;Parent=Msa1087200-mRNA-1
chr7_2 exon 87811002 87811433 87811002 ID=Msa1087200-mRNA-1:exon:24030;Parent=Msa1087200-mRNA-1
chr7_2 five_prime_UTR 87811342 87811433 87811342 ID=Msa1087200-mRNA-1:five_prime_utr;Parent=Msa1087200-mRNA-1
chr7_2 CDS 87811002 87811341 87811002 ID=Msa1087200-mRNA-1:cds;Parent=Msa1087200-mRNA-1
chr7_2 CDS 87810855 87810881 87810855 ID=Msa1087200-mRNA-1:cds;Parent=Msa1087200-mRNA-1
chr7_2 CDS 87810228 87810439 87810228 ID=Msa1087200-mRNA-1:cds;Parent=Msa1087200-mRNA-1
chr7_2 three_prime_UTR 87810034 87810227 87810034 ID=Msa1087200-mRNA-1:three_prime_utr;Parent=Msa1087200-mRNA-1
Gene Sequence

>Msa1087200

ATGGATCATTTCGCGTCTCTCTACCGCCTAACTGTGGTGTTAGCCGTGGCTTCGATCATGGCTGCACCAGCCTACGCTCAAATCACGACGCCATGTAACATATCAATGGTAAGTAGTACCATTAGCCCTTGCTTGAGTTTCCTCACAAATAGTAGTGGCAATGGAACCTCACCCACTGCTGATTGCTGCAATGCAATCAAGACCCTCACAAGTGGAAGCAAGGATTGTATGTGTCTTATTGCCACTGGCAATGTTCCTTTTGCATTACCAATCAATAGAACCTTAGCTATCTCTCTTCCTCGTGCTTGTAACTTGCCTGGTGTTCCACTTCAATGCAAAACTTCGGGCTCACCGCTTCCTGCTCCAGGTTCTTCTATACTTCCCTCACCAGTGACACCTTCTCTGTCACCACAGCCTGAGACAACCAATCCATTATCTCCATCAGCGAACCCTGATATTCCATCTGCAACGCCCGGAAGTGGCCGCTCTGATCTGACTCCATCATCTGCTGGATCATCATCTTATAGTCTCCTACTATCTGTTTTGGTCATTGGATTTTCTATATTAAAACACTACTAG

Protein sequence

>Msa1087200

MDHFASLYRLTVVLAVASIMAAPAYAQITTPCNISMVSSTISPCLSFLTNSSGNGTSPTADCCNAIKTLTSGSKDCMCLIATGNVPFALPINRTLAISLPRACNLPGVPLQCKTSGSPLPAPGSSILPSPVTPSLSPQPETTNPLSPSANPDIPSATPGSGRSDLTPSSAGSSSYSLLLSVLVIGFSILKHY*