Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163300 | KEH23791.1 | 85.938 | 192 | 13 | 1 | 1 | 192 | 1 | 178 | 2.96e-107 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163300 | sp|Q94AX3|LTG16_ARATH | 35.294 | 170 | 87 | 5 | 4 | 161 | 33 | 191 | 3.15e-20 | 87.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163300 | A0A072U353 | 85.938 | 192 | 13 | 1 | 1 | 192 | 1 | 178 | 1.41e-107 | 315 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024650 | Msa1163300 | 0.805509 | 1.289640e-49 | -8.615850e-47 |
| Msa0084190 | Msa1163300 | 0.800956 | 1.129703e-48 | -8.615850e-47 |
| Msa0614960 | Msa1163300 | 0.800372 | 1.486326e-48 | -8.615850e-47 |
| Msa0658150 | Msa1163300 | 0.844476 | 7.386387e-59 | -8.615850e-47 |
| Msa0677130 | Msa1163300 | 0.820540 | 6.498658e-53 | -8.615850e-47 |
| Msa0703000 | Msa1163300 | 0.844280 | 8.336173e-59 | -8.615850e-47 |
| Msa0730890 | Msa1163300 | 0.805479 | 1.308658e-49 | -8.615850e-47 |
| Msa0738570 | Msa1163300 | 0.814592 | 1.424634e-51 | -8.615850e-47 |
| Msa0750790 | Msa1163300 | 0.808780 | 2.617546e-50 | -8.615850e-47 |
| Msa0758150 | Msa1163300 | 0.806912 | 6.534040e-50 | -8.615850e-47 |
| Msa0768670 | Msa1163300 | 0.814730 | 1.327886e-51 | -8.615850e-47 |
| Msa0773030 | Msa1163300 | 0.804649 | 1.952257e-49 | -8.615850e-47 |
| Msa0776340 | Msa1163300 | 0.827505 | 1.507990e-54 | -8.615850e-47 |
| Msa0783580 | Msa1163300 | 0.802542 | 5.341000e-49 | -8.615850e-47 |
| Msa0794090 | Msa1163300 | 0.803180 | 3.943190e-49 | -8.615850e-47 |
| Msa0813840 | Msa1163300 | 0.813712 | 2.227826e-51 | -8.615850e-47 |
| Msa0817100 | Msa1163300 | 0.803731 | 3.030720e-49 | -8.615850e-47 |
| Msa0819110 | Msa1163300 | 0.801733 | 7.834353e-49 | -8.615850e-47 |
| Msa0132250 | Msa1163300 | 0.814299 | 1.653636e-51 | -8.615850e-47 |
| Msa0163690 | Msa1163300 | 0.819274 | 1.266086e-52 | -8.615850e-47 |
| Msa0189990 | Msa1163300 | 0.823337 | 1.462458e-53 | -8.615850e-47 |
| Msa0418230 | Msa1163300 | 0.832613 | 8.552338e-56 | -8.615850e-47 |
| Msa0444210 | Msa1163300 | 0.802482 | 5.494976e-49 | -8.615850e-47 |
| Msa0464620 | Msa1163300 | 0.834867 | 2.338027e-56 | -8.615850e-47 |
| Msa0996980 | Msa1163300 | 0.810498 | 1.118864e-50 | -8.615850e-47 |
| Msa1006030 | Msa1163300 | 0.805479 | 1.308896e-49 | -8.615850e-47 |
| Msa1035880 | Msa1163300 | 0.995512 | 5.186611e-217 | -8.615850e-47 |
| Msa1040330 | Msa1163300 | 0.820415 | 6.944043e-53 | -8.615850e-47 |
| Msa1049400 | Msa1163300 | 0.801481 | 8.823057e-49 | -8.615850e-47 |
| Msa1087200 | Msa1163300 | 0.808081 | 3.689511e-50 | -8.615850e-47 |
| Msa0247780 | Msa1163300 | 0.847872 | 8.782647e-60 | -8.615850e-47 |
| Msa0325260 | Msa1163300 | 0.843002 | 1.831315e-58 | -8.615850e-47 |
| Msa1108610 | Msa1163300 | 0.803083 | 4.128304e-49 | -8.615850e-47 |
| Msa1163300 | Msa1187750 | 0.803158 | 3.983324e-49 | -8.615850e-47 |
| Msa1163300 | Msa1211940 | 0.815748 | 7.887030e-52 | -8.615850e-47 |
| Msa1163300 | Msa1344450 | 0.806205 | 9.208351e-50 | -8.615850e-47 |
| Msa1163300 | Msa1349420 | 0.818647 | 1.757188e-52 | -8.615850e-47 |
| Msa1163300 | Msa1376070 | 0.805918 | 1.058217e-49 | -8.615850e-47 |
| Msa1163300 | Msa1376880 | 0.807433 | 5.067790e-50 | -8.615850e-47 |
| Msa1163300 | Msa1384130 | 0.838630 | 2.565127e-57 | -8.615850e-47 |
| Msa1163300 | Msa1395080 | 0.844311 | 8.178836e-59 | -8.615850e-47 |
| Msa1163300 | Msa1421130 | 0.809053 | 2.288219e-50 | -8.615850e-47 |
| Msa0491770 | Msa1163300 | 0.808092 | 3.670234e-50 | -8.615850e-47 |
| Msa0510050 | Msa1163300 | 0.805112 | 1.562469e-49 | -8.615850e-47 |
| Msa0531040 | Msa1163300 | 0.800823 | 1.202857e-48 | -8.615850e-47 |
| Msa0538650 | Msa1163300 | 0.813555 | 2.412628e-51 | -8.615850e-47 |
| Msa0566490 | Msa1163300 | 0.842077 | 3.223457e-58 | -8.615850e-47 |
| Msa0847140 | Msa1163300 | 0.809440 | 1.890277e-50 | -8.615850e-47 |
| Msa0853080 | Msa1163300 | 0.816550 | 5.219540e-52 | -8.615850e-47 |
| Msa0854380 | Msa1163300 | 0.805672 | 1.192191e-49 | -8.615850e-47 |
| Msa0859230 | Msa1163300 | 0.805970 | 1.032272e-49 | -8.615850e-47 |
| Msa0896920 | Msa1163300 | 0.813710 | 2.230549e-51 | -8.615850e-47 |
| Msa0910590 | Msa1163300 | 0.801716 | 7.897887e-49 | -8.615850e-47 |
| Msa0948430 | Msa1163300 | 0.807029 | 6.169410e-50 | -8.615850e-47 |
| Msa0950090 | Msa1163300 | 0.807159 | 5.791253e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163300 | MtrunA17_Chr7g0260071 | 85.561 | 187 | 13 | 1 | 6 | 192 | 41 | 213 | 1.48e-107 | 307 |
| Msa1163300 | MtrunA17_Chr1g0185311 | 52.941 | 153 | 61 | 7 | 1 | 149 | 36 | 181 | 2.66e-36 | 125 |
| Msa1163300 | MtrunA17_Chr1g0205171 | 47.423 | 97 | 45 | 2 | 2 | 98 | 37 | 127 | 3.82e-23 | 92.0 |
| Msa1163300 | MtrunA17_Chr5g0394991 | 42.857 | 105 | 59 | 1 | 1 | 105 | 36 | 139 | 1.94e-21 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1163300 | AT2G48140.1 | 35.294 | 170 | 87 | 5 | 4 | 161 | 33 | 191 | 3.21e-21 | 87.0 |
| Msa1163300 | AT2G48140.2 | 46.429 | 84 | 45 | 0 | 4 | 87 | 33 | 116 | 4.69e-20 | 82.0 |
| Msa1163300 | AT1G05450.2 | 42.574 | 101 | 54 | 2 | 4 | 104 | 39 | 135 | 1.17e-17 | 77.8 |
| Msa1163300 | AT3G22620.1 | 33.511 | 188 | 97 | 7 | 4 | 187 | 35 | 198 | 1.41e-11 | 61.2 |
Find 48 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGCAATTGTAATGGTTTA+TGG | 0.164215 | 7_4:+54497773 | Msa1163300:CDS |
| GTCTTTGATGGGCACTAATA+TGG | 0.225608 | 7_4:+54495371 | Msa1163300:CDS |
| CTACTTGTTGTGATTCATTA+AGG | 0.267679 | 7_4:+54495349 | Msa1163300:CDS |
| ATTGCAAGAACTTGGTTAAT+AGG | 0.287987 | 7_4:-54495441 | None:intergenic |
| TAAACTACCTTGAGAACTTA+AGG | 0.310158 | 7_4:-54496646 | None:intergenic |
| TGATTCATTAAGGTCTTTGA+TGG | 0.371159 | 7_4:+54495359 | Msa1163300:CDS |
| TAGAGCTGGTAAGGGAGAAC+TGG | 0.380694 | 7_4:-54495626 | None:intergenic |
| CCTTGTGCTAACATCATAAC+AGG | 0.384512 | 7_4:+54495297 | Msa1163300:CDS |
| AAACTACCTTGAGAACTTAA+GGG | 0.393516 | 7_4:-54496645 | None:intergenic |
| ATAACAGGAAGCACTAATAA+TGG | 0.421549 | 7_4:+54495312 | Msa1163300:CDS |
| TGTTTGATTCAATACCTGTT+GGG | 0.422953 | 7_4:-54496593 | None:intergenic |
| GGTGCTTCTGCAGCTTCCAT+TGG | 0.431162 | 7_4:-54497653 | None:intergenic |
| GAACTTGGTTAATAGGTAGT+TGG | 0.432984 | 7_4:-54495434 | None:intergenic |
| GAGCACTTGAAGGGAGAGTT+GGG | 0.442034 | 7_4:-54496617 | None:intergenic |
| GAGCATTGGAAGACAACATA+AGG | 0.445627 | 7_4:-54495404 | None:intergenic |
| AAGGGAGTTGGAGCACTTGA+AGG | 0.448487 | 7_4:-54496627 | None:intergenic |
| TATAATTCTTGATGTTTCAG+TGG | 0.450285 | 7_4:-54497675 | None:intergenic |
| CATAATCATAGCAATTGTAA+TGG | 0.451027 | 7_4:+54497766 | Msa1163300:CDS |
| ATACATGCCTAGAGCTGGTA+AGG | 0.456573 | 7_4:-54495635 | None:intergenic |
| CATATATGAGAATCTGCAAT+TGG | 0.460310 | 7_4:+54497604 | Msa1163300:CDS |
| GAAGGAAGAGGAGTCAAAAC+TGG | 0.462367 | 7_4:-54497698 | None:intergenic |
| GAATCACAACAAGTAGTTGA+TGG | 0.473600 | 7_4:-54495342 | None:intergenic |
| GGAGCACTTGAAGGGAGAGT+TGG | 0.475069 | 7_4:-54496618 | None:intergenic |
| AAAGAGACATTGCAAGAACT+TGG | 0.476462 | 7_4:-54495449 | None:intergenic |
| TCTGCAATTGGCAGAGGCAT+TGG | 0.478623 | 7_4:+54497616 | Msa1163300:CDS |
| CCTTGAGAACTTAAGGGAGT+TGG | 0.494659 | 7_4:-54496639 | None:intergenic |
| GGAGGAGACGCTGAAGGAAG+AGG | 0.510430 | 7_4:-54497710 | None:intergenic |
| GGTGAGAAGGAATGATAAGA+CGG | 0.517723 | 7_4:-54497731 | None:intergenic |
| GCTTCCATTGGTGCTGATGA+TGG | 0.518630 | 7_4:-54497641 | None:intergenic |
| CTGTTTGATTCAATACCTGT+TGG | 0.523473 | 7_4:-54496594 | None:intergenic |
| ATAATTCTTGATGTTTCAGT+GGG | 0.531983 | 7_4:-54497674 | None:intergenic |
| GATTCATTAAGGTCTTTGAT+GGG | 0.535229 | 7_4:+54495360 | Msa1163300:CDS |
| TAGTTGGAAAATTTGAGCAT+TGG | 0.538312 | 7_4:-54495418 | None:intergenic |
| AGTTCTCCCTTACCAGCTCT+AGG | 0.539411 | 7_4:+54495628 | Msa1163300:CDS |
| AATCAATACATGCCTAGAGC+TGG | 0.556293 | 7_4:-54495640 | None:intergenic |
| TGAGAATCTGCAATTGGCAG+AGG | 0.559664 | 7_4:+54497610 | Msa1163300:CDS |
| TCTCAAGCATGTAATATCAA+AGG | 0.562021 | 7_4:+54495471 | Msa1163300:CDS |
| GAATAATGCAGAAGGTGAGA+AGG | 0.571988 | 7_4:-54497744 | None:intergenic |
| AGGGAGTTGGAGCACTTGAA+GGG | 0.572850 | 7_4:-54496626 | None:intergenic |
| GGTACCATCATCAGCACCAA+TGG | 0.575486 | 7_4:+54497637 | Msa1163300:CDS |
| CCAACTCCCTTAAGTTCTCA+AGG | 0.579224 | 7_4:+54496639 | Msa1163300:CDS |
| GGAGCTTCTCTTCAGTGCAA+AGG | 0.609225 | 7_4:+54495492 | Msa1163300:CDS |
| GAGAAGGAATGATAAGACGG+AGG | 0.610857 | 7_4:-54497728 | None:intergenic |
| CCTGTTATGATGTTAGCACA+AGG | 0.620375 | 7_4:-54495297 | None:intergenic |
| AGAGCTGGTAAGGGAGAACT+GGG | 0.639589 | 7_4:-54495625 | None:intergenic |
| TACATGCCTAGAGCTGGTAA+GGG | 0.659627 | 7_4:-54495634 | None:intergenic |
| ATGATTATGAATAATGCAGA+AGG | 0.660048 | 7_4:-54497752 | None:intergenic |
| TAAGACGGAGGAGACGCTGA+AGG | 0.661699 | 7_4:-54497716 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTATAAAATCTGAAATA+TGG | - | chr7_4:54496722-54496741 | None:intergenic | 10.0% |
| !!! | TTAGAATATTTTAGTTTTTA+TGG | + | chr7_4:54496983-54497002 | Msa1163300:intron | 10.0% |
| !!! | TTATTTTATTTTTTTACGAA+AGG | + | chr7_4:54497117-54497136 | Msa1163300:intron | 10.0% |
| !!! | TTTGTAAATTTTTAAAAGTT+AGG | - | chr7_4:54497362-54497381 | None:intergenic | 10.0% |
| !! | ATATGTATTAAAAAAACATG+AGG | - | chr7_4:54496155-54496174 | None:intergenic | 15.0% |
| !!! | TTTTGAAAAATAACATAACA+TGG | - | chr7_4:54497217-54497236 | None:intergenic | 15.0% |
| !! | TTAAGAAAACAATTTCATTT+CGG | - | chr7_4:54497386-54497405 | None:intergenic | 15.0% |
| !!! | AAATGAAATTGTTTTCTTAA+CGG | + | chr7_4:54497386-54497405 | Msa1163300:intron | 15.0% |
| !!! | ATTTTTGAAATTTTTTGACT+TGG | - | chr7_4:54497508-54497527 | None:intergenic | 15.0% |
| !!! | TGACAGTAAAATAAAGTTTT+GGG | - | chr7_4:54495695-54495714 | None:intergenic | 20.0% |
| !!! | TTGACAGTAAAATAAAGTTT+TGG | - | chr7_4:54495696-54495715 | None:intergenic | 20.0% |
| !! | TTTCATCATTTCTTTATTCT+AGG | - | chr7_4:54495794-54495813 | None:intergenic | 20.0% |
| !!! | TAACCACTTTTAATCTAAAT+AGG | - | chr7_4:54496090-54496109 | None:intergenic | 20.0% |
| !!! | TAAAAATCAAGTTGTACAAT+TGG | + | chr7_4:54496342-54496361 | Msa1163300:intron | 20.0% |
| !!! | ATAAAATCTGAAATATGGTA+GGG | - | chr7_4:54496717-54496736 | None:intergenic | 20.0% |
| !!! | TATAAAATCTGAAATATGGT+AGG | - | chr7_4:54496718-54496737 | None:intergenic | 20.0% |
| !!! | TGCTTAGACTTTTAAAATAT+TGG | + | chr7_4:54496847-54496866 | Msa1163300:intron | 20.0% |
| !!! | GCTTAGACTTTTAAAATATT+GGG | + | chr7_4:54496848-54496867 | Msa1163300:intron | 20.0% |
| !! | AAATATTGGGTTAAATTTCA+AGG | + | chr7_4:54496861-54496880 | Msa1163300:intron | 20.0% |
| !!! | CTTGATAAGTTTTAATGTTT+TGG | + | chr7_4:54497059-54497078 | Msa1163300:intron | 20.0% |
| !! | TAACCTTATGCATATTTATA+GGG | - | chr7_4:54497243-54497262 | None:intergenic | 20.0% |
| !!! | TTGTGTATACTTTAAAACTT+GGG | - | chr7_4:54497316-54497335 | None:intergenic | 20.0% |
| !!! | ATTGTGTATACTTTAAAACT+TGG | - | chr7_4:54497317-54497336 | None:intergenic | 20.0% |
| !! | TAAGAAAACAATTTCATTTC+GGG | - | chr7_4:54497385-54497404 | None:intergenic | 20.0% |
| ! | TTCTAACGTTAGGTAATATT+TGG | + | chr7_4:54495893-54495912 | Msa1163300:intron | 25.0% |
| ! | ACTTATTCTATACTTTGGAT+GGG | + | chr7_4:54495930-54495949 | Msa1163300:intron | 25.0% |
| ! | ATTTATGTAAGGGTAATGTT+TGG | - | chr7_4:54496049-54496068 | None:intergenic | 25.0% |
| ! | TAACCACACTATTTATGTAA+GGG | - | chr7_4:54496059-54496078 | None:intergenic | 25.0% |
| ! | ATAACCACACTATTTATGTA+AGG | - | chr7_4:54496060-54496079 | None:intergenic | 25.0% |
| ! | CTTCCTATTTAGATTAAAAG+TGG | + | chr7_4:54496084-54496103 | Msa1163300:intron | 25.0% |
| ! | AAATAAACAAGAACATCATG+AGG | - | chr7_4:54496270-54496289 | None:intergenic | 25.0% |
| !!! | ATTGTGTTGATTTGTTGAAA+CGG | + | chr7_4:54496555-54496574 | Msa1163300:intron | 25.0% |
| ! | AAAAACATCCTACAACATTT+CGG | + | chr7_4:54496762-54496781 | Msa1163300:intron | 25.0% |
| !! | TCTAAAAATCAATCAGCTTT+TGG | - | chr7_4:54496968-54496987 | None:intergenic | 25.0% |
| !!! | GGAGATTATTTGTTTTTGAA+AGG | + | chr7_4:54497080-54497099 | Msa1163300:intron | 25.0% |
| !!! | TTATTTGTTTTTGAAAGGAG+AGG | + | chr7_4:54497085-54497104 | Msa1163300:intron | 25.0% |
| ! | CTAACCTTATGCATATTTAT+AGG | - | chr7_4:54497244-54497263 | None:intergenic | 25.0% |
| ! | ATAATTCTTGATGTTTCAGT+GGG | - | chr7_4:54497677-54497696 | None:intergenic | 25.0% |
| ! | TATAATTCTTGATGTTTCAG+TGG | - | chr7_4:54497678-54497697 | None:intergenic | 25.0% |
| ! | ATGATTATGAATAATGCAGA+AGG | - | chr7_4:54497755-54497774 | None:intergenic | 25.0% |
| ! | CATAATCATAGCAATTGTAA+TGG | + | chr7_4:54497766-54497785 | Msa1163300:CDS | 25.0% |
| ! | ATAGCAATTGTAATGGTTTA+TGG | + | chr7_4:54497773-54497792 | Msa1163300:CDS | 25.0% |
| !! | ATAACAGGAAGCACTAATAA+TGG | + | chr7_4:54495312-54495331 | Msa1163300:CDS | 30.0% |
| !! | CTACTTGTTGTGATTCATTA+AGG | + | chr7_4:54495349-54495368 | Msa1163300:CDS | 30.0% |
| TGATTCATTAAGGTCTTTGA+TGG | + | chr7_4:54495359-54495378 | Msa1163300:CDS | 30.0% | |
| GATTCATTAAGGTCTTTGAT+GGG | + | chr7_4:54495360-54495379 | Msa1163300:CDS | 30.0% | |
| TAGTTGGAAAATTTGAGCAT+TGG | - | chr7_4:54495421-54495440 | None:intergenic | 30.0% | |
| ATTGCAAGAACTTGGTTAAT+AGG | - | chr7_4:54495444-54495463 | None:intergenic | 30.0% | |
| TCTCAAGCATGTAATATCAA+AGG | + | chr7_4:54495471-54495490 | Msa1163300:CDS | 30.0% | |
| ACAACTATGACTATTAGTAG+TGG | + | chr7_4:54495729-54495748 | Msa1163300:intron | 30.0% | |
| TATTAGTAGTGGTGTTTGTT+GGG | + | chr7_4:54495740-54495759 | Msa1163300:intron | 30.0% | |
| CATCCACTTATTCTATACTT+TGG | + | chr7_4:54495925-54495944 | Msa1163300:intron | 30.0% | |
| CATCCAAAGTATAGAATAAG+TGG | - | chr7_4:54495931-54495950 | None:intergenic | 30.0% | |
| CACTTATTCTATACTTTGGA+TGG | + | chr7_4:54495929-54495948 | Msa1163300:intron | 30.0% | |
| ATAAAGAGAAAGTGAGAATG+TGG | + | chr7_4:54495983-54496002 | Msa1163300:intron | 30.0% | |
| TAAAGAGAAAGTGAGAATGT+GGG | + | chr7_4:54495984-54496003 | Msa1163300:intron | 30.0% | |
| TTACCCTTACATAAATAGTG+TGG | + | chr7_4:54496053-54496072 | Msa1163300:intron | 30.0% | |
| TGTTTGATTCAATACCTGTT+GGG | - | chr7_4:54496596-54496615 | None:intergenic | 30.0% | |
| AAACTACCTTGAGAACTTAA+GGG | - | chr7_4:54496648-54496667 | None:intergenic | 30.0% | |
| TAAACTACCTTGAGAACTTA+AGG | - | chr7_4:54496649-54496668 | None:intergenic | 30.0% | |
| TATGAAATCCGAAATGTTGT+AGG | - | chr7_4:54496773-54496792 | None:intergenic | 30.0% | |
| ATTTCAAGGAGCAATACAAT+TGG | + | chr7_4:54496875-54496894 | Msa1163300:intron | 30.0% | |
| CTTGTCAGCTAAAAATATGA+AGG | + | chr7_4:54496923-54496942 | Msa1163300:intron | 30.0% | |
| ! | CTTGTTATACAAATGATGCA+AGG | + | chr7_4:54497031-54497050 | Msa1163300:intron | 30.0% |
| CATCCCTATAAATATGCATA+AGG | + | chr7_4:54497237-54497256 | Msa1163300:intron | 30.0% | |
| AGTGATTTGAGAATAACTAG+TGG | - | chr7_4:54497451-54497470 | None:intergenic | 30.0% | |
| AAGTTAATCTAACATGCCTT+TGG | + | chr7_4:54497545-54497564 | Msa1163300:intron | 30.0% | |
| ! | AGTTTTTGAATCTGTTCCAA+AGG | - | chr7_4:54497564-54497583 | None:intergenic | 30.0% |
| TGGAACAGATTCAAAAACTT+TGG | + | chr7_4:54497565-54497584 | Msa1163300:intron | 30.0% | |
| CATATATGAGAATCTGCAAT+TGG | + | chr7_4:54497604-54497623 | Msa1163300:CDS | 30.0% | |
| GAATCACAACAAGTAGTTGA+TGG | - | chr7_4:54495345-54495364 | None:intergenic | 35.0% | |
| GAACTTGGTTAATAGGTAGT+TGG | - | chr7_4:54495437-54495456 | None:intergenic | 35.0% | |
| AAAGAGACATTGCAAGAACT+TGG | - | chr7_4:54495452-54495471 | None:intergenic | 35.0% | |
| CTATTAGTAGTGGTGTTTGT+TGG | + | chr7_4:54495739-54495758 | Msa1163300:intron | 35.0% | |
| TGTGAGTTTCTTCTAACGTT+AGG | + | chr7_4:54495883-54495902 | Msa1163300:intron | 35.0% | |
| TATTCTATACTTTGGATGGG+AGG | + | chr7_4:54495933-54495952 | Msa1163300:intron | 35.0% | |
| ATTCTATACTTTGGATGGGA+GGG | + | chr7_4:54495934-54495953 | Msa1163300:intron | 35.0% | |
| ATGATCAAGAATGCAAACGA+TGG | - | chr7_4:54496320-54496339 | None:intergenic | 35.0% | |
| TGTACAATTGGTTGTTGTGT+TGG | + | chr7_4:54496354-54496373 | Msa1163300:intron | 35.0% | |
| GCTATAAAAAGCTTGTGTGT+GGG | - | chr7_4:54496464-54496483 | None:intergenic | 35.0% | |
| TGCTATAAAAAGCTTGTGTG+TGG | - | chr7_4:54496465-54496484 | None:intergenic | 35.0% | |
| ! | TTGTTGAAACGGCTATGTTT+TGG | + | chr7_4:54496566-54496585 | Msa1163300:intron | 35.0% |
| CTGTTTGATTCAATACCTGT+TGG | - | chr7_4:54496597-54496616 | None:intergenic | 35.0% | |
| GATTTGAGAATAACTAGTGG+AGG | - | chr7_4:54497448-54497467 | None:intergenic | 35.0% | |
| CCTGTTATGATGTTAGCACA+AGG | - | chr7_4:54495300-54495319 | None:intergenic | 40.0% | |
| CCTTGTGCTAACATCATAAC+AGG | + | chr7_4:54495297-54495316 | Msa1163300:CDS | 40.0% | |
| ! | GTCTTTGATGGGCACTAATA+TGG | + | chr7_4:54495371-54495390 | Msa1163300:CDS | 40.0% |
| !! | GAGCATTGGAAGACAACATA+AGG | - | chr7_4:54495407-54495426 | None:intergenic | 40.0% |
| AATCAATACATGCCTAGAGC+TGG | - | chr7_4:54495643-54495662 | None:intergenic | 40.0% | |
| ATTCATTCCACACCTCAGAA+TGG | - | chr7_4:54496012-54496031 | None:intergenic | 40.0% | |
| AAGAGCTCACAAATGACCAA+AGG | + | chr7_4:54496426-54496445 | Msa1163300:intron | 40.0% | |
| AGAGCTCACAAATGACCAAA+GGG | + | chr7_4:54496427-54496446 | Msa1163300:intron | 40.0% | |
| TGGGTAACTAACAATCCCTT+TGG | - | chr7_4:54496445-54496464 | None:intergenic | 40.0% | |
| ! | GATTTTCTTTTCCCACCTTC+CGG | + | chr7_4:54496678-54496697 | Msa1163300:intron | 40.0% |
| ! | ATTTTCTTTTCCCACCTTCC+GGG | + | chr7_4:54496679-54496698 | Msa1163300:intron | 40.0% |
| AGATCCTAAGTACGGTCTTA+CGG | - | chr7_4:54497421-54497440 | None:intergenic | 40.0% | |
| GAGGTCAAAGATCCTAAGTA+CGG | - | chr7_4:54497429-54497448 | None:intergenic | 40.0% | |
| GGTGAGAAGGAATGATAAGA+CGG | - | chr7_4:54497734-54497753 | None:intergenic | 40.0% | |
| GAATAATGCAGAAGGTGAGA+AGG | - | chr7_4:54497747-54497766 | None:intergenic | 40.0% | |
| TACATGCCTAGAGCTGGTAA+GGG | - | chr7_4:54495637-54495656 | None:intergenic | 45.0% | |
| ATACATGCCTAGAGCTGGTA+AGG | - | chr7_4:54495638-54495657 | None:intergenic | 45.0% | |
| AGAATGTGGGATCCATTCTG+AGG | + | chr7_4:54495997-54496016 | Msa1163300:intron | 45.0% | |
| !!! | TGAAACGGCTATGTTTTGGC+AGG | + | chr7_4:54496570-54496589 | Msa1163300:intron | 45.0% |
| CCTTGAGAACTTAAGGGAGT+TGG | - | chr7_4:54496642-54496661 | None:intergenic | 45.0% | |
| CCAACTCCCTTAAGTTCTCA+AGG | + | chr7_4:54496639-54496658 | Msa1163300:CDS | 45.0% | |
| ! | TTTTCTTTTCCCACCTTCCG+GGG | + | chr7_4:54496680-54496699 | Msa1163300:intron | 45.0% |
| CGGATTTCATAATCCGAACC+AGG | + | chr7_4:54496782-54496801 | Msa1163300:intron | 45.0% | |
| ATAATCCGAACCAGGTGAGA+AGG | + | chr7_4:54496790-54496809 | Msa1163300:intron | 45.0% | |
| TAATCCGAACCAGGTGAGAA+GGG | + | chr7_4:54496791-54496810 | Msa1163300:intron | 45.0% | |
| TCTACCGTAAGACCGTACTT+AGG | + | chr7_4:54497414-54497433 | Msa1163300:intron | 45.0% | |
| TGAGAATCTGCAATTGGCAG+AGG | + | chr7_4:54497610-54497629 | Msa1163300:CDS | 45.0% | |
| GAAGGAAGAGGAGTCAAAAC+TGG | - | chr7_4:54497701-54497720 | None:intergenic | 45.0% | |
| GAGAAGGAATGATAAGACGG+AGG | - | chr7_4:54497731-54497750 | None:intergenic | 45.0% | |
| GGAGCTTCTCTTCAGTGCAA+AGG | + | chr7_4:54495492-54495511 | Msa1163300:CDS | 50.0% | |
| AGAGCTGGTAAGGGAGAACT+GGG | - | chr7_4:54495628-54495647 | None:intergenic | 50.0% | |
| TAGAGCTGGTAAGGGAGAAC+TGG | - | chr7_4:54495629-54495648 | None:intergenic | 50.0% | |
| AGTTCTCCCTTACCAGCTCT+AGG | + | chr7_4:54495628-54495647 | Msa1163300:CDS | 50.0% | |
| !!! | TATGTTTTGGCAGGCCCAAC+AGG | + | chr7_4:54496579-54496598 | Msa1163300:intron | 50.0% |
| GAGCACTTGAAGGGAGAGTT+GGG | - | chr7_4:54496620-54496639 | None:intergenic | 50.0% | |
| ! | AGGGAGTTGGAGCACTTGAA+GGG | - | chr7_4:54496629-54496648 | None:intergenic | 50.0% |
| ! | AAGGGAGTTGGAGCACTTGA+AGG | - | chr7_4:54496630-54496649 | None:intergenic | 50.0% |
| ATTGAGAAACCCCGGAAGGT+GGG | - | chr7_4:54496692-54496711 | None:intergenic | 50.0% | |
| GTAGGGTGATTGAGAAACCC+CGG | - | chr7_4:54496700-54496719 | None:intergenic | 50.0% | |
| ! | TCTGCAATTGGCAGAGGCAT+TGG | + | chr7_4:54497616-54497635 | Msa1163300:CDS | 50.0% |
| GGTACCATCATCAGCACCAA+TGG | + | chr7_4:54497637-54497656 | Msa1163300:CDS | 50.0% | |
| !! | GCTTCCATTGGTGCTGATGA+TGG | - | chr7_4:54497644-54497663 | None:intergenic | 50.0% |
| !! | GTGGGATCCATTCTGAGGTG+TGG | + | chr7_4:54496002-54496021 | Msa1163300:intron | 55.0% |
| ! | GGAGCACTTGAAGGGAGAGT+TGG | - | chr7_4:54496621-54496640 | None:intergenic | 55.0% |
| GATTGAGAAACCCCGGAAGG+TGG | - | chr7_4:54496693-54496712 | None:intergenic | 55.0% | |
| GGTGATTGAGAAACCCCGGA+AGG | - | chr7_4:54496696-54496715 | None:intergenic | 55.0% | |
| ! | CTTTTCCCACCCTTCTCACC+TGG | - | chr7_4:54496803-54496822 | None:intergenic | 55.0% |
| GGTGCTTCTGCAGCTTCCAT+TGG | - | chr7_4:54497656-54497675 | None:intergenic | 55.0% | |
| TAAGACGGAGGAGACGCTGA+AGG | - | chr7_4:54497719-54497738 | None:intergenic | 55.0% | |
| TCCGAACCAGGTGAGAAGGG+TGG | + | chr7_4:54496794-54496813 | Msa1163300:intron | 60.0% | |
| CCCACCCTTCTCACCTGGTT+CGG | - | chr7_4:54496798-54496817 | None:intergenic | 60.0% | |
| CCGAACCAGGTGAGAAGGGT+GGG | + | chr7_4:54496795-54496814 | Msa1163300:intron | 60.0% | |
| GGAGGAGACGCTGAAGGAAG+AGG | - | chr7_4:54497713-54497732 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 54495276 | 54497805 | 54495276 | ID=Msa1163300;Name=Msa1163300 |
| chr7_4 | mRNA | 54495276 | 54497805 | 54495276 | ID=Msa1163300-mRNA-1;Parent=Msa1163300;Name=Msa1163300-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|0.75|1|1|4|0|193 |
| chr7_4 | exon | 54495276 | 54495513 | 54495276 | ID=Msa1163300-mRNA-1:exon:15835;Parent=Msa1163300-mRNA-1 |
| chr7_4 | exon | 54495608 | 54495649 | 54495608 | ID=Msa1163300-mRNA-1:exon:15836;Parent=Msa1163300-mRNA-1 |
| chr7_4 | exon | 54496592 | 54496660 | 54496592 | ID=Msa1163300-mRNA-1:exon:15837;Parent=Msa1163300-mRNA-1 |
| chr7_4 | exon | 54497573 | 54497805 | 54497573 | ID=Msa1163300-mRNA-1:exon:15838;Parent=Msa1163300-mRNA-1 |
| chr7_4 | CDS | 54495276 | 54495513 | 54495276 | ID=Msa1163300-mRNA-1:cds;Parent=Msa1163300-mRNA-1 |
| chr7_4 | CDS | 54495608 | 54495649 | 54495608 | ID=Msa1163300-mRNA-1:cds;Parent=Msa1163300-mRNA-1 |
| chr7_4 | CDS | 54496592 | 54496660 | 54496592 | ID=Msa1163300-mRNA-1:cds;Parent=Msa1163300-mRNA-1 |
| chr7_4 | CDS | 54497573 | 54497805 | 54497573 | ID=Msa1163300-mRNA-1:cds;Parent=Msa1163300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
