AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0813840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0813840 MtrunA17_Chr5g0431581 97.143 560 15 1 1 559 1 560 0.0 1123
Msa0813840 MtrunA17_Chr5g0437681 60.670 567 215 3 1 559 1 567 0.0 738
Msa0813840 MtrunA17_Chr3g0114211 60.286 559 220 2 3 559 12 570 0.0 728
Msa0813840 MtrunA17_Chr5g0404361 52.847 562 251 6 3 559 59 611 0.0 603
Msa0813840 MtrunA17_Chr5g0404341 52.035 565 252 7 3 559 13 566 0.0 583
Msa0813840 MtrunA17_Chr7g0238351 51.865 563 245 8 16 559 26 581 0.0 572
Msa0813840 MtrunA17_Chr2g0278811 46.477 596 278 8 2 559 15 607 0.0 568
Msa0813840 MtrunA17_Chr7g0238981 51.273 550 249 6 25 559 48 593 0.0 566
Msa0813840 MtrunA17_Chr7g0237441 50.432 579 258 10 1 559 11 580 0.0 563
Msa0813840 MtrunA17_Chr7g0238941 51.845 569 253 10 7 559 15 578 0.0 563
Msa0813840 MtrunA17_Chr5g0429511 49.470 566 266 8 4 559 3 558 0.0 561
Msa0813840 MtrunA17_Chr4g0005921 50.179 558 264 6 8 559 8 557 0.0 560
Msa0813840 MtrunA17_Chr7g0237491 50.347 576 257 10 4 559 14 580 0.0 559
Msa0813840 MtrunA17_Chr3g0104061 50.912 548 253 7 17 559 20 556 0.0 549
Msa0813840 MtrunA17_Chr4g0031901 50.536 560 256 12 1 547 22 573 0.0 534
Msa0813840 MtrunA17_Chr7g0240991 45.927 577 288 10 1 559 1 571 0.0 531
Msa0813840 MtrunA17_Chr5g0436461 48.175 548 267 9 18 559 18 554 0.0 529
Msa0813840 MtrunA17_Chr7g0240971 49.472 568 271 8 4 559 7 570 0.0 528
Msa0813840 MtrunA17_Chr4g0008521 48.446 547 267 6 26 559 28 572 0.0 525
Msa0813840 MtrunA17_Chr8g0346581 44.144 555 299 7 12 559 21 571 1.01e-174 506
Msa0813840 MtrunA17_Chr3g0133861 48.148 324 160 5 226 542 1 323 3.15e-100 306
Msa0813840 MtrunA17_Chr3g0133871 54.348 184 83 1 22 205 31 213 1.11e-68 221
Msa0813840 MtrunA17_Chr8g0382691 31.514 568 329 18 16 550 24 564 1.94e-68 231
Msa0813840 MtrunA17_Chr3g0118321 31.579 570 315 22 4 534 9 542 6.86e-67 227
Msa0813840 MtrunA17_Chr3g0118331 29.289 577 346 21 4 549 9 554 9.94e-59 205
Msa0813840 MtrunA17_Chr5g0436431 45.690 232 111 7 292 517 6 228 1.08e-55 187
Msa0813840 MtrunA17_Chr3g0079321 27.798 554 355 16 5 541 8 533 2.82e-47 174
Msa0813840 MtrunA17_Chr4g0056511 27.113 568 378 15 4 559 6 549 6.20e-46 170
Msa0813840 MtrunA17_Chr4g0038671 28.723 564 349 19 8 559 10 532 1.59e-44 165
Msa0813840 MtrunA17_Chr3g0121161 26.703 558 343 16 4 541 47 558 7.63e-44 164
Msa0813840 MtrunA17_Chr4g0024861 28.295 569 348 18 6 559 7 530 8.15e-44 163
Msa0813840 MtrunA17_Chr3g0121151 27.605 547 352 16 4 541 47 558 1.24e-43 164
Msa0813840 MtrunA17_Chr3g0121171 27.605 547 352 16 4 541 1157 1668 7.96e-43 165
Msa0813840 MtrunA17_Chr3g0121171 27.768 551 346 17 4 541 582 1093 1.22e-42 164
Msa0813840 MtrunA17_Chr3g0121171 27.894 527 335 16 25 541 27 518 1.09e-41 161
Msa0813840 MtrunA17_Chr3g0121171 26.556 482 289 15 80 541 1798 2234 4.08e-35 141
Msa0813840 MtrunA17_Chr3g0143671 28.571 574 350 20 1 559 5 533 1.50e-42 160
Msa0813840 MtrunA17_Chr4g0043251 27.737 548 325 19 2 525 3 503 4.46e-42 159
Msa0813840 MtrunA17_Chr4g0043261 26.531 539 328 19 8 525 6 497 2.13e-41 157
Msa0813840 MtrunA17_Chr5g0402831 27.255 521 321 19 17 525 22 496 1.55e-40 154
Msa0813840 MtrunA17_Chr8g0374261 27.324 527 335 16 8 525 10 497 2.92e-40 153
Msa0813840 MtrunA17_Chr1g0157341 26.527 573 357 15 4 559 7 532 4.11e-40 153
Msa0813840 MtrunA17_Chr2g0322441 29.456 533 319 18 39 559 46 533 6.49e-39 149
Msa0813840 MtrunA17_Chr8g0374271 26.614 511 332 16 21 525 26 499 7.05e-39 149
Msa0813840 MtrunA17_Chr7g0234061 27.930 512 330 18 25 524 30 514 1.17e-36 144
Msa0813840 MtrunA17_Chr4g0075071 27.739 566 353 20 7 559 12 534 9.54e-33 132
Msa0813840 MtrunA17_Chr4g0024641 28.778 483 291 18 87 559 14 453 6.19e-30 125
Msa0813840 MtrunA17_Chr3g0118341 38.272 162 93 6 4 163 9 165 2.45e-27 109
Msa0813840 MtrunA17_Chr3g0118351 29.651 344 190 11 236 549 5 326 3.60e-27 112
Msa0813840 MtrunA17_Chr1g0197311 26.667 195 109 5 11 172 10 203 7.72e-15 74.3
Msa0813840 MtrunA17_Chr3g0118931 36.264 91 53 2 469 559 10 95 3.40e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0813840 AT2G30210.1 70.515 563 157 2 5 559 9 570 0.0 833
Msa0813840 AT5G07130.1 65.439 570 185 5 1 559 1 569 0.0 764
Msa0813840 AT5G05390.1 60.428 561 215 5 3 559 8 565 0.0 718
Msa0813840 AT2G40370.1 58.333 576 222 4 2 559 5 580 0.0 714
Msa0813840 AT5G07130.2 68.041 485 143 5 86 559 1 484 0.0 668
Msa0813840 AT5G07130.3 68.041 485 143 5 86 559 1 484 0.0 668
Msa0813840 AT2G29130.1 52.705 573 250 9 4 559 5 573 0.0 580
Msa0813840 AT5G09360.1 49.378 563 273 7 1 559 15 569 0.0 576
Msa0813840 AT5G03260.1 51.337 561 257 7 4 559 8 557 0.0 568
Msa0813840 AT5G60020.1 51.964 560 236 10 25 559 26 577 0.0 567
Msa0813840 AT5G60020.3 52.727 550 227 10 35 559 4 545 0.0 564
Msa0813840 AT2G38080.1 50.088 567 266 8 1 559 1 558 0.0 557
Msa0813840 AT5G58910.2 49.470 566 267 6 4 559 11 567 0.0 548
Msa0813840 AT5G58910.3 49.470 566 266 7 4 559 11 566 0.0 547
Msa0813840 AT5G01190.1 50.000 560 267 6 5 559 7 558 0.0 539
Msa0813840 AT2G46570.1 46.085 562 292 7 5 559 12 569 0.0 528
Msa0813840 AT5G58910.1 50.281 533 240 6 37 559 6 523 0.0 527
Msa0813840 AT5G01190.2 51.527 524 242 5 41 559 28 544 0.0 524
Msa0813840 AT3G09220.1 49.457 552 257 9 4 542 8 550 0.0 522
Msa0813840 AT1G18140.1 47.965 565 266 9 17 559 23 581 2.20e-180 521
Msa0813840 AT5G60020.2 51.931 518 216 10 25 517 26 535 1.32e-177 513
Msa0813840 AT5G01040.1 45.714 560 285 7 11 559 15 566 4.48e-173 502
Msa0813840 AT5G48100.1 45.336 536 279 9 24 549 22 553 5.19e-168 489
Msa0813840 AT5G01050.1 45.018 562 288 7 11 559 15 568 9.26e-168 489
Msa0813840 AT2G46570.2 46.186 485 251 6 81 559 4 484 4.96e-157 457
Msa0813840 AT3G09220.2 49.455 459 212 8 97 542 2 453 3.89e-148 434
Msa0813840 AT5G21100.1 31.520 533 303 17 39 538 39 542 2.82e-69 234
Msa0813840 AT4G39830.1 31.532 555 301 21 39 549 51 570 3.90e-68 231
Msa0813840 AT5G21105.1 30.688 567 329 21 5 537 22 558 1.11e-64 222
Msa0813840 AT5G21105.3 30.347 547 317 22 5 517 22 538 3.67e-55 195
Msa0813840 AT4G39830.3 30.512 508 275 20 85 549 1 473 7.80e-51 182
Msa0813840 AT4G39830.2 30.556 504 272 20 89 549 7 475 3.70e-50 180
Msa0813840 AT1G75790.1 28.411 535 327 15 1 519 1 495 3.72e-49 179
Msa0813840 AT4G25240.2 29.422 571 356 18 4 559 12 550 2.02e-48 177
Msa0813840 AT4G25240.1 29.422 571 356 18 4 559 12 550 2.02e-48 177
Msa0813840 AT4G12420.1 28.037 535 349 14 5 527 6 516 3.46e-47 174
Msa0813840 AT4G12420.2 28.037 535 349 14 5 527 6 516 3.46e-47 174
Msa0813840 AT4G39830.4 29.821 503 264 19 89 549 7 462 1.90e-46 170
Msa0813840 AT5G66920.1 27.928 555 326 17 25 559 38 538 1.90e-45 168
Msa0813840 AT5G51480.1 26.607 560 372 16 14 559 16 550 9.14e-44 164
Msa0813840 AT5G48450.2 27.370 559 353 19 8 556 13 528 1.04e-43 164
Msa0813840 AT1G21850.1 28.860 544 302 19 8 525 12 496 1.18e-43 163
Msa0813840 AT5G48450.1 27.370 559 353 19 8 556 13 528 1.78e-43 164
Msa0813840 AT1G21860.1 27.205 533 326 17 8 525 11 496 1.54e-41 157
Msa0813840 AT4G22010.1 27.617 554 362 14 11 559 11 530 1.99e-41 157
Msa0813840 AT1G76160.1 27.599 558 359 17 8 559 12 530 9.97e-41 155
Msa0813840 AT1G41830.1 26.372 565 365 16 3 559 10 531 7.74e-40 152
Msa0813840 AT4G28090.1 25.763 524 351 13 6 524 9 499 2.54e-37 145
Msa0813840 AT1G55570.1 26.335 543 324 16 4 519 7 500 4.13e-37 145
Msa0813840 AT2G23630.2 29.602 527 320 19 42 559 53 537 9.60e-37 144
Msa0813840 AT2G23630.1 29.602 527 320 19 42 559 48 532 1.26e-36 143
Msa0813840 AT4G37160.1 27.580 562 366 17 2 559 10 534 2.63e-34 137
Msa0813840 AT3G13390.1 26.326 509 323 16 25 519 29 499 3.53e-33 134
Msa0813840 AT5G21105.2 30.267 337 207 11 209 537 51 367 1.20e-32 129
Msa0813840 AT1G55560.1 25.468 534 338 19 4 519 5 496 9.60e-32 129
Msa0813840 AT3G13400.2 25.794 535 335 20 4 519 6 497 6.02e-31 127
Msa0813840 AT3G13400.1 25.794 535 335 20 4 519 6 497 6.02e-31 127
Msa0813840 AT4G38420.2 31.769 277 176 7 6 278 9 276 4.90e-30 123
Msa0813840 AT4G38420.3 32.500 280 170 8 6 278 9 276 1.11e-29 122
Msa0813840 AT4G38420.1 32.500 280 170 8 6 278 9 276 2.92e-29 122
Msa0813840 AT4G37160.2 29.316 307 196 6 2 305 10 298 4.34e-26 111

Find 152 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCATTATTTATCCGAAAA+TGG 0.151993 5_3:-45090264 Msa0813840:CDS
CCTTGACACCTTGGACTATT+AGG 0.188458 5_3:+45088966 None:intergenic
TTTATAGTTGGTTCAGGTTT+TGG 0.199584 5_3:-45088645 Msa0813840:CDS
GCCACCATAGTGTTCCTTCT+TGG 0.231177 5_3:+45090327 None:intergenic
AATTGACCTTGGTACAATTA+TGG 0.233819 5_3:+45087965 None:intergenic
CAAAGGATACTCACGGTAAA+TGG 0.249661 5_3:-45090677 Msa0813840:CDS
CCGTCCCTCGCTTCGATTGT+TGG 0.252327 5_3:+45090641 None:intergenic
GTCTTGAAGGTGGTCTATTT+TGG 0.257321 5_3:+45089141 None:intergenic
ATTGTTGTGAATCAGGAATT+TGG 0.267922 5_3:-45088219 Msa0813840:intron
AATGGTAAAGCTGGCAAAAT+AGG 0.297294 5_3:+45089119 None:intergenic
AGAGAATTTCCCATTCTTCT+TGG 0.298450 5_3:-45090212 Msa0813840:intron
AAGTTGTTCAAGTTGAAATA+TGG 0.300472 5_3:-45088750 Msa0813840:CDS
TTAATGCAAGCTTACTATAA+TGG 0.307661 5_3:-45088876 Msa0813840:CDS
AATTGAGTAACATATAATTT+AGG 0.310714 5_3:+45088060 None:intergenic
CATTTCTTTATAGTTGGTTC+AGG 0.332092 5_3:-45088651 Msa0813840:CDS
CTCCATAGACAGTGGCTCTT+AGG 0.334059 5_3:+45090288 None:intergenic
AACGTAGCAGGATCAGTTCT+TGG 0.335909 5_3:+45088612 None:intergenic
ACATAGATTCACATCTCAAT+TGG 0.345519 5_3:-45088183 Msa0813840:CDS
ATTATAGTAAGCTTGCATTA+AGG 0.353120 5_3:+45088878 None:intergenic
TTCCTAAGAGCCACTGTCTA+TGG 0.354270 5_3:-45090290 Msa0813840:CDS
GGGTTTGGCAACAGCACTTT+TGG 0.375326 5_3:-45088161 Msa0813840:CDS
TTCACATCTCAATTGGGGTT+TGG 0.376065 5_3:-45088176 Msa0813840:CDS
GGGTTCCATTTCTTTATAGT+TGG 0.378042 5_3:-45088657 Msa0813840:CDS
CATAGATTCACATCTCAATT+GGG 0.380545 5_3:-45088182 Msa0813840:CDS
CCATTTGGTCCTTGACACCT+TGG 0.385637 5_3:+45088957 None:intergenic
GCTGCAAATCTTGTTCCATT+TGG 0.386553 5_3:+45088942 None:intergenic
TGCATTAAGGAAGTTGTTCT+AGG 0.389050 5_3:+45088891 None:intergenic
GCTTACTATAATGGTGTTCC+TGG 0.390895 5_3:-45088867 Msa0813840:CDS
ATAATTGTACCAAGGTCAAT+TGG 0.393944 5_3:-45087963 Msa0813840:three_prime_UTR
ATGCATTATACCTGGATTAT+CGG 0.396646 5_3:+45088515 None:intergenic
TTGAAGATTACCAAGAAGAA+TGG 0.396806 5_3:+45090202 None:intergenic
TTCATTATTTATCCGAAAAT+GGG 0.397106 5_3:-45090263 Msa0813840:CDS
ATCTCCTGGTTGACCATTCA+TGG 0.401011 5_3:+45089729 None:intergenic
GTTGTCAAATGCAGCATTCA+TGG 0.401840 5_3:+45089190 None:intergenic
GAATGATTTCAAACCTTGGC+TGG 0.402430 5_3:+45089693 None:intergenic
ACGGTAAATGGACAGTTTCC+TGG 0.403408 5_3:-45090665 Msa0813840:CDS
CCACCTGTGAGGAATACTAT+TGG 0.412353 5_3:-45088576 Msa0813840:CDS
TGTGCAACAGGCATGGGCTT+AGG 0.415052 5_3:-45090445 Msa0813840:intron
GCATTCACATCAAGGATTAG+AGG 0.421253 5_3:-45089071 Msa0813840:CDS
TTATTGTTCACTGTAGGGTT+AGG 0.421636 5_3:-45089008 Msa0813840:CDS
CTGAACCAACTATAAAGAAA+TGG 0.426203 5_3:+45088652 None:intergenic
ATGCAGCATTCATGGCGGTT+TGG 0.436299 5_3:+45089198 None:intergenic
GAGGTATCACTGACTGTAAT+GGG 0.438774 5_3:+45088122 None:intergenic
TTGAACTGTATAGGAGGAAC+AGG 0.439285 5_3:+45088822 None:intergenic
GATCACCCTATGCATGTTCA+TGG 0.442341 5_3:-45088678 Msa0813840:CDS
CGTTTCAACGCCGATAATCC+AGG 0.444632 5_3:-45088525 Msa0813840:intron
GAAATGTTCCTAGGGGTTTG+TGG 0.445135 5_3:-45088791 Msa0813840:CDS
TCTCTAGTTGGCTTAGAGAA+AGG 0.447045 5_3:+45090230 None:intergenic
ATTACACAGGAAATGTTCCT+AGG 0.452764 5_3:-45088800 Msa0813840:CDS
TGAAGATTACCAAGAAGAAT+GGG 0.457331 5_3:+45090203 None:intergenic
GCTGGCAAAATAGGTCTTGA+AGG 0.459511 5_3:+45089128 None:intergenic
AGAATGGGAAATTCTCTAGT+TGG 0.466112 5_3:+45090218 None:intergenic
CCTGTGTAATTGAACTGTAT+AGG 0.466472 5_3:+45088813 None:intergenic
GTTTGTCTTAAGAGAGCCAT+TGG 0.471023 5_3:+45089793 None:intergenic
GTGTATGCAATAGATACATT+TGG 0.475787 5_3:+45089751 None:intergenic
CCAAGGTGTCAAGGACCAAA+TGG 0.477385 5_3:-45088957 Msa0813840:CDS
GTTGGCTTAGAGAAAGGATA+AGG 0.479975 5_3:+45090236 None:intergenic
GTGAGTTTATTGTTCACTGT+AGG 0.484623 5_3:-45089014 Msa0813840:CDS
TGGAACACCTCCTGGTGGAT+GGG 0.487188 5_3:-45088556 Msa0813840:CDS
CTCGCTTCGATTGTTGGACC+AGG 0.488842 5_3:+45090647 None:intergenic
TAATTGTACCAAGGTCAATT+GGG 0.489561 5_3:-45087962 Msa0813840:three_prime_UTR
TAACTTCCACCTGGTTGGAT+TGG 0.489901 5_3:+45090374 None:intergenic
TCTTAAGAGAATTGTTTCTC+CGG 0.491448 5_3:+45089415 None:intergenic
TCGACAAGGTTGAACGTAGC+AGG 0.491890 5_3:+45088600 None:intergenic
GTGATCAAAGTAACAAATGC+TGG 0.495378 5_3:-45090608 Msa0813840:CDS
TGAGTTTATTGTTCACTGTA+GGG 0.502703 5_3:-45089013 Msa0813840:CDS
AACACTAGAGTCCTCATGAT+AGG 0.504563 5_3:-45089296 Msa0813840:CDS
GGAGGTATCACTGACTGTAA+TGG 0.504892 5_3:+45088121 None:intergenic
AATACTATTGGAACACCTCC+TGG 0.507986 5_3:-45088564 Msa0813840:CDS
TTGAGAAATCCATGGGCTGA+TGG 0.512347 5_3:-45090419 Msa0813840:CDS
TTGGAACACCTCCTGGTGGA+TGG 0.512973 5_3:-45088557 Msa0813840:CDS
AACACCTCCTGGTGGATGGG+TGG 0.515918 5_3:-45088553 Msa0813840:CDS
GAACATCTGTAGAGATCTCC+TGG 0.518086 5_3:+45089715 None:intergenic
AAAACCAAGAAGGAACACTA+TGG 0.519751 5_3:-45090331 Msa0813840:CDS
CAGTGGATGGAGATGTTGTA+AGG 0.523772 5_3:+45090584 None:intergenic
TCTATTGCATACACCATGAA+TGG 0.528526 5_3:-45089742 Msa0813840:CDS
CTCTACAGATGTTCCAGCCA+AGG 0.531699 5_3:-45089706 Msa0813840:intron
GCCGCCATGTAGTATCGGCC+AGG 0.532008 5_3:+45089230 None:intergenic
CTGCAAAACAATCTGAACAT+TGG 0.532115 5_3:+45088725 None:intergenic
CTGCAACTGCATTCACATCA+AGG 0.532127 5_3:-45089079 Msa0813840:CDS
TGAGGTAGATCTGGTGGTGG+AGG 0.538755 5_3:+45088103 None:intergenic
GGACATTGTGTCACATAACT+AGG 0.539105 5_3:+45090395 None:intergenic
TGGAACCCATGAACATGCAT+AGG 0.539781 5_3:+45088672 None:intergenic
ACCACCTGGCCGATACTACA+TGG 0.540545 5_3:-45089234 Msa0813840:CDS
TAGCATTGAGGTAGATCTGG+TGG 0.543913 5_3:+45088097 None:intergenic
TTTACAATTCAAAACCAAGA+AGG 0.543934 5_3:-45090341 Msa0813840:CDS
TGTTTCATTTGCTGCAGCAG+AGG 0.548223 5_3:-45090846 Msa0813840:CDS
ATATTTCAACTTGAACAACT+TGG 0.548915 5_3:+45088752 None:intergenic
CGATGATAGTTACCAGTGGA+TGG 0.549490 5_3:+45090571 None:intergenic
TATCATGAGGACTCTAGTGT+TGG 0.554372 5_3:+45089298 None:intergenic
CGCGTGCCGCCATGTAGTAT+CGG 0.555822 5_3:+45089225 None:intergenic
CTAGGTGTCCACAAACCCCT+AGG 0.555841 5_3:+45088783 None:intergenic
TATGCAATAGATACATTTGG+AGG 0.558814 5_3:+45089754 None:intergenic
ATGTGTAACTTCCACCTGGT+TGG 0.559503 5_3:+45090369 None:intergenic
TTACACAGGAAATGTTCCTA+GGG 0.560206 5_3:-45088799 Msa0813840:CDS
CCTAATAGTCCAAGGTGTCA+AGG 0.568344 5_3:-45088966 Msa0813840:CDS
CGAATGGCCACCCATCCACC+AGG 0.572787 5_3:+45088546 None:intergenic
GTCACAGCTGATCAACCACC+TGG 0.575678 5_3:-45089248 Msa0813840:CDS
CAAGTAATCCCAATTGACCT+TGG 0.580017 5_3:+45087954 None:intergenic
ATGGTTTGATAGAGATCCAA+TGG 0.580804 5_3:-45089809 Msa0813840:CDS
GGTTTGTGGACACCTAGAAA+AGG 0.582031 5_3:-45088777 Msa0813840:CDS
TACTAGTATAGTAACAATTG+AGG 0.584246 5_3:-45088700 Msa0813840:CDS
TTAAGACAAACACAGTTCAC+AGG 0.584771 5_3:-45089781 Msa0813840:CDS
CGGTATGTGTAACTTCCACC+TGG 0.585408 5_3:+45090365 None:intergenic
ATGAGGACTCTAGTGTTGGA+AGG 0.587715 5_3:+45089302 None:intergenic
GGCATAGACTTGAAAACGTA+CGG 0.589109 5_3:+45089436 None:intergenic
TTCAAACTGCAACAGTGAAG+AGG 0.591115 5_3:-45090712 Msa0813840:CDS
ATCACCCTATGCATGTTCAT+GGG 0.594471 5_3:-45088677 Msa0813840:CDS
ATAGATTCACATCTCAATTG+GGG 0.596176 5_3:-45088181 Msa0813840:CDS
TTAGGATGTTGAGAAATCCA+TGG 0.598180 5_3:-45090427 Msa0813840:CDS
CAGAATGACTGTTGTTGCTA+CGG 0.601727 5_3:-45089342 Msa0813840:CDS
AGGACATTGATTGTTTGACC+TGG 0.607085 5_3:+45089272 None:intergenic
AAACACTTACAACAAACTGA+TGG 0.608462 5_3:+45090816 None:intergenic
CATTGAGGTAGATCTGGTGG+TGG 0.610540 5_3:+45088100 None:intergenic
GCACAAATCCTAATAGTCCA+AGG 0.611114 5_3:-45088974 Msa0813840:CDS
TACACCATGAATGGTCAACC+AGG 0.613643 5_3:-45089733 Msa0813840:CDS
TTTGACCTGGTCCTATCATG+AGG 0.614547 5_3:+45089285 None:intergenic
TGGTCCAACAATCGAAGCGA+GGG 0.614589 5_3:-45090645 Msa0813840:CDS
GTGTAATTGAACTGTATAGG+AGG 0.616090 5_3:+45088816 None:intergenic
GGAACCCATGAACATGCATA+GGG 0.618003 5_3:+45088673 None:intergenic
CCTATACAGTTCAATTACAC+AGG 0.618962 5_3:-45088813 Msa0813840:CDS
CTATGGTGGCATGCTCACAC+TGG 0.620025 5_3:-45090314 Msa0813840:CDS
TAGGATGTTGAGAAATCCAT+GGG 0.621362 5_3:-45090426 Msa0813840:CDS
CCAATAGTATTCCTCACAGG+TGG 0.626541 5_3:+45088576 None:intergenic
GTGGTTGATCAGCTGTGACA+AGG 0.626930 5_3:+45089252 None:intergenic
CTTACAACATCTCCATCCAC+TGG 0.628162 5_3:-45090583 Msa0813840:intron
TCCTCACAGGTGGATCGACA+AGG 0.628411 5_3:+45088586 None:intergenic
CCAACAATCGAAGCGAGGGA+CGG 0.628554 5_3:-45090641 Msa0813840:CDS
AGAGTCCTCATGATAGGACC+AGG 0.629037 5_3:-45089290 Msa0813840:CDS
GTTCCAATAGTATTCCTCAC+AGG 0.630506 5_3:+45088573 None:intergenic
ATTATCGGCGTTGAAACGAA+TGG 0.633041 5_3:+45088530 None:intergenic
AACTGTATAGGAGGAACAGG+AGG 0.636960 5_3:+45088825 None:intergenic
TAACTAGGTCCATCAGCCCA+TGG 0.645673 5_3:+45090410 None:intergenic
ACACAATGTCCAATCCAACC+AGG 0.647850 5_3:-45090383 Msa0813840:CDS
CTGGTCCAACAATCGAAGCG+AGG 0.651566 5_3:-45090646 Msa0813840:CDS
CAAAACACAAAGGATACTCA+CGG 0.656314 5_3:-45090684 Msa0813840:CDS
CAAGGTCCATAATTGTACCA+AGG 0.661063 5_3:-45087971 Msa0813840:three_prime_UTR
TACACAGGAAATGTTCCTAG+GGG 0.663460 5_3:-45088798 Msa0813840:CDS
GCCATGTAGTATCGGCCAGG+TGG 0.665400 5_3:+45089233 None:intergenic
TGATGTGAATGCAGTTGCAG+TGG 0.665699 5_3:+45089082 None:intergenic
ACCAAGAAGGAACACTATGG+TGG 0.666226 5_3:-45090328 Msa0813840:CDS
TAGCAACAACAGTCATTCTG+TGG 0.668466 5_3:+45089345 None:intergenic
AATGAAAGCTCCATAGACAG+TGG 0.677360 5_3:+45090280 None:intergenic
ACTATTGGAACACCTCCTGG+TGG 0.679776 5_3:-45088561 Msa0813840:CDS
ACCTTGTCGATCCACCTGTG+AGG 0.686020 5_3:-45088587 Msa0813840:CDS
GTCAAATGCAGCATTCATGG+CGG 0.689483 5_3:+45089193 None:intergenic
GGCAAAATAGGTCTTGAAGG+TGG 0.689950 5_3:+45089131 None:intergenic
AGAGGCTGTGCAAAACACAA+AGG 0.694979 5_3:-45090694 Msa0813840:CDS
CAATGTCCAATCCAACCAGG+TGG 0.711993 5_3:-45090380 Msa0813840:CDS
ATGGCCACCCATCCACCAGG+AGG 0.714381 5_3:+45088549 None:intergenic
AGGAACAGGAGGAAAATCTG+TGG 0.731627 5_3:+45088836 None:intergenic
ACCTGGCCGATACTACATGG+CGG 0.772870 5_3:-45089231 Msa0813840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTGAGTATTTTTTTTTA+GGG + chr5_3:45088893-45088912 None:intergenic 15.0%
!!! TTGTTTGAGTATTTTTTTTT+AGG + chr5_3:45088894-45088913 None:intergenic 15.0%
!! ACTCAAAATCATTTATATTA+CGG - chr5_3:45089279-45089298 Msa0813840:CDS 15.0%
!!! ATTTTGAAAGACTTTAATTT+TGG + chr5_3:45089781-45089800 None:intergenic 15.0%
!! AATTGAGTAACATATAATTT+AGG + chr5_3:45090764-45090783 None:intergenic 15.0%
!! AAAAAGAAATACAATCTATA+TGG + chr5_3:45090821-45090840 None:intergenic 15.0%
!! TTTCATTATTTATCCGAAAA+TGG - chr5_3:45088557-45088576 Msa0813840:CDS 20.0%
!! TTCATTATTTATCCGAAAAT+GGG - chr5_3:45088558-45088577 Msa0813840:CDS 20.0%
!!! GTATTTTTTTTTAGGGATTT+GGG + chr5_3:45088886-45088905 None:intergenic 20.0%
!!! AGTATTTTTTTTTAGGGATT+TGG + chr5_3:45088887-45088906 None:intergenic 20.0%
!!! AGCTTTTTGTATATAAGTAA+AGG - chr5_3:45088946-45088965 Msa0813840:CDS 20.0%
!!! GAAAAATGAGTTCTAAATTA+TGG + chr5_3:45089312-45089331 None:intergenic 20.0%
!! GTATAAAACAATTACAATGT+AGG - chr5_3:45089360-45089379 Msa0813840:CDS 20.0%
!!! ATGTGAATGTTTTTAAATCA+TGG - chr5_3:45090491-45090510 Msa0813840:intron 20.0%
!! TGAATTCAAAAATCAACATT+TGG + chr5_3:45090583-45090602 None:intergenic 20.0%
!!! ACTATTTTATGCTACTTACT+TGG - chr5_3:45087937-45087956 Msa0813840:three_prime_UTR 25.0%
! TAGTTAATACAGTTGCAAAT+TGG + chr5_3:45088065-45088084 None:intergenic 25.0%
! TAACTAACTTTAATGATTGC+TGG - chr5_3:45088079-45088098 Msa0813840:exon 25.0%
!! AAGTATTTAAGACCATAATG+AGG + chr5_3:45088284-45088303 None:intergenic 25.0%
! ATAGTGAATGTTTGGATAAA+CGG + chr5_3:45088329-45088348 None:intergenic 25.0%
!!! CTTGGTTTTGAATTGTAAAT+CGG + chr5_3:45088479-45088498 None:intergenic 25.0%
! TTTACAATTCAAAACCAAGA+AGG - chr5_3:45088480-45088499 Msa0813840:intron 25.0%
! TTTGATAAACCTTTCGAAAT+AGG - chr5_3:45088665-45088684 Msa0813840:CDS 25.0%
! AATTCAAATCCTATTTCGAA+AGG + chr5_3:45088677-45088696 None:intergenic 25.0%
!! TTTTGTATATAAGTAAAGGC+AGG - chr5_3:45088950-45088969 Msa0813840:CDS 25.0%
! TTTGTATATAAGTAAAGGCA+GGG - chr5_3:45088951-45088970 Msa0813840:CDS 25.0%
! AAAAACACATTCTGTCAATA+TGG + chr5_3:45088977-45088996 None:intergenic 25.0%
!!! AATGTGTTTTTATGATGCAT+AGG - chr5_3:45088986-45089005 Msa0813840:CDS 25.0%
!!! ATGTGTTTTTATGATGCATA+GGG - chr5_3:45088987-45089006 Msa0813840:CDS 25.0%
! ATTAGAATGATTTCAAACCT+TGG + chr5_3:45089135-45089154 None:intergenic 25.0%
!! GTTGATAAAAAAGTGACTAA+AGG - chr5_3:45089338-45089357 Msa0813840:CDS 25.0%
!!! TTTACCATTTTTTAACGACA+CGG - chr5_3:45089716-45089735 Msa0813840:CDS 25.0%
! ATTATAGTAAGCTTGCATTA+AGG + chr5_3:45089946-45089965 None:intergenic 25.0%
! TTAATGCAAGCTTACTATAA+TGG - chr5_3:45089945-45089964 Msa0813840:intron 25.0%
! ATATTTCAACTTGAACAACT+TGG + chr5_3:45090072-45090091 None:intergenic 25.0%
!!! AAGTTGTTCAAGTTGAAATA+TGG - chr5_3:45090071-45090090 Msa0813840:intron 25.0%
! TACTAGTATAGTAACAATTG+AGG - chr5_3:45090121-45090140 Msa0813840:intron 25.0%
! TAACATAAATGCATTATACC+TGG + chr5_3:45090317-45090336 None:intergenic 25.0%
!! TTTCTTTTTGTGATGTTTCA+AGG - chr5_3:45090832-45090851 Msa0813840:CDS 25.0%
AAACACTTACAACAAACTGA+TGG + chr5_3:45088008-45088027 None:intergenic 30.0%
TAGTGAATGTTTGGATAAAC+GGG + chr5_3:45088328-45088347 None:intergenic 30.0%
TGAAGATTACCAAGAAGAAT+GGG + chr5_3:45088621-45088640 None:intergenic 30.0%
TTGAAGATTACCAAGAAGAA+TGG + chr5_3:45088622-45088641 None:intergenic 30.0%
TCCAAATTTCAATTCGGATT+TGG - chr5_3:45088749-45088768 Msa0813840:CDS 30.0%
TCCAAATCCGAATTGAAATT+TGG + chr5_3:45088753-45088772 None:intergenic 30.0%
!! TGTGTTTTTATGATGCATAG+GGG - chr5_3:45088988-45089007 Msa0813840:CDS 30.0%
TATGCAATAGATACATTTGG+AGG + chr5_3:45089070-45089089 None:intergenic 30.0%
GTGTATGCAATAGATACATT+TGG + chr5_3:45089073-45089092 None:intergenic 30.0%
AAAACGATGTATGGAAGTAA+TGG + chr5_3:45089161-45089180 None:intergenic 30.0%
! CTGCAATTTAAAACGATGTA+TGG + chr5_3:45089170-45089189 None:intergenic 30.0%
CACATTTAGCTGCAATATAA+AGG + chr5_3:45089217-45089236 None:intergenic 30.0%
CTTTATATTGCAGCTAAATG+TGG - chr5_3:45089215-45089234 Msa0813840:CDS 30.0%
!!! TTGAGTTTTTTGCAACAGTA+TGG + chr5_3:45089265-45089284 None:intergenic 30.0%
! TCTTAAGAGAATTGTTTCTC+CGG + chr5_3:45089409-45089428 None:intergenic 30.0%
TCGTTAAAAAATGGTAAAGC+TGG + chr5_3:45089714-45089733 None:intergenic 30.0%
TGAGTTTATTGTTCACTGTA+GGG - chr5_3:45089808-45089827 Msa0813840:CDS 30.0%
CTGAACCAACTATAAAGAAA+TGG + chr5_3:45090172-45090191 None:intergenic 30.0%
! CATTTCTTTATAGTTGGTTC+AGG - chr5_3:45090170-45090189 Msa0813840:intron 30.0%
!! TTTATAGTTGGTTCAGGTTT+TGG - chr5_3:45090176-45090195 Msa0813840:intron 30.0%
ATGCATTATACCTGGATTAT+CGG + chr5_3:45090309-45090328 None:intergenic 30.0%
TAAAACACTGACACAAACAT+CGG + chr5_3:45090465-45090484 None:intergenic 30.0%
! TGTTTGTGTCAGTGTTTTAT+AGG - chr5_3:45090466-45090485 Msa0813840:intron 30.0%
TCTCTTGCATAGTTTATACT+AGG - chr5_3:45090533-45090552 Msa0813840:intron 30.0%
TGAATTCATTGTTGTGAATC+AGG - chr5_3:45090595-45090614 Msa0813840:CDS 30.0%
ATTGTTGTGAATCAGGAATT+TGG - chr5_3:45090602-45090621 Msa0813840:CDS 30.0%
ACATAGATTCACATCTCAAT+TGG - chr5_3:45090638-45090657 Msa0813840:CDS 30.0%
CATAGATTCACATCTCAATT+GGG - chr5_3:45090639-45090658 Msa0813840:CDS 30.0%
ATAGATTCACATCTCAATTG+GGG - chr5_3:45090640-45090659 Msa0813840:CDS 30.0%
! TAATGATGCTTTTAGCATTG+AGG + chr5_3:45090739-45090758 None:intergenic 30.0%
AATTGACCTTGGTACAATTA+TGG + chr5_3:45090859-45090878 None:intergenic 30.0%
ATAATTGTACCAAGGTCAAT+TGG - chr5_3:45090858-45090877 Msa0813840:CDS 30.0%
TAATTGTACCAAGGTCAATT+GGG - chr5_3:45090859-45090878 Msa0813840:CDS 30.0%
CAAAACACAAAGGATACTCA+CGG - chr5_3:45088137-45088156 Msa0813840:CDS 35.0%
GTGATCAAAGTAACAAATGC+TGG - chr5_3:45088213-45088232 Msa0813840:intron 35.0%
TCAGGAACATAGTGAATGTT+TGG + chr5_3:45088337-45088356 None:intergenic 35.0%
AGACACATAAGAAGATTGTC+AGG + chr5_3:45088355-45088374 None:intergenic 35.0%
TTAGGATGTTGAGAAATCCA+TGG - chr5_3:45088394-45088413 Msa0813840:intron 35.0%
TAGGATGTTGAGAAATCCAT+GGG - chr5_3:45088395-45088414 Msa0813840:intron 35.0%
AAAACCAAGAAGGAACACTA+TGG - chr5_3:45088490-45088509 Msa0813840:intron 35.0%
AGAATGGGAAATTCTCTAGT+TGG + chr5_3:45088606-45088625 None:intergenic 35.0%
AGAGAATTTCCCATTCTTCT+TGG - chr5_3:45088609-45088628 Msa0813840:CDS 35.0%
! AACTAGCTCTCTTAAAGTGA+TGG + chr5_3:45088647-45088666 None:intergenic 35.0%
TAAACACCGAGCTTGAAATA+TGG - chr5_3:45088788-45088807 Msa0813840:CDS 35.0%
AATGGTCCATATTTCAAGCT+CGG + chr5_3:45088797-45088816 None:intergenic 35.0%
GACCATTCGATCTTTATCAA+TGG - chr5_3:45088810-45088829 Msa0813840:CDS 35.0%
! TTTTATGATGCATAGGGGAA+TGG - chr5_3:45088993-45089012 Msa0813840:CDS 35.0%
ATGGTTTGATAGAGATCCAA+TGG - chr5_3:45089012-45089031 Msa0813840:CDS 35.0%
TTAAGACAAACACAGTTCAC+AGG - chr5_3:45089040-45089059 Msa0813840:CDS 35.0%
TCTATTGCATACACCATGAA+TGG - chr5_3:45089079-45089098 Msa0813840:CDS 35.0%
AATGGTAAAGCTGGCAAAAT+AGG + chr5_3:45089705-45089724 None:intergenic 35.0%
GTGAGTTTATTGTTCACTGT+AGG - chr5_3:45089807-45089826 Msa0813840:CDS 35.0%
TTATTGTTCACTGTAGGGTT+AGG - chr5_3:45089813-45089832 Msa0813840:CDS 35.0%
TGCATTAAGGAAGTTGTTCT+AGG + chr5_3:45089933-45089952 None:intergenic 35.0%
AAATCTGTGGTAAAAACACC+AGG + chr5_3:45089975-45089994 None:intergenic 35.0%
GTGTAATTGAACTGTATAGG+AGG + chr5_3:45090008-45090027 None:intergenic 35.0%
CCTGTGTAATTGAACTGTAT+AGG + chr5_3:45090011-45090030 None:intergenic 35.0%
CCTATACAGTTCAATTACAC+AGG - chr5_3:45090008-45090027 Msa0813840:intron 35.0%
ATTACACAGGAAATGTTCCT+AGG - chr5_3:45090021-45090040 Msa0813840:intron 35.0%
TTACACAGGAAATGTTCCTA+GGG - chr5_3:45090022-45090041 Msa0813840:intron 35.0%
! AACAACTTGGTTCCTTTTCT+AGG + chr5_3:45090059-45090078 None:intergenic 35.0%
CTGCAAAACAATCTGAACAT+TGG + chr5_3:45090099-45090118 None:intergenic 35.0%
!! CAATGTTCAGATTGTTTTGC+AGG - chr5_3:45090097-45090116 Msa0813840:intron 35.0%
GGGTTCCATTTCTTTATAGT+TGG - chr5_3:45090164-45090183 Msa0813840:intron 35.0%
ACTATGCAAGAGAGAGATAT+CGG + chr5_3:45090526-45090545 None:intergenic 35.0%
! ACAGCACTTTTGGTAGAAAA+TGG - chr5_3:45090670-45090689 Msa0813840:CDS 35.0%
! CTTTTGGTAGAAAATGGAGT+TGG - chr5_3:45090676-45090695 Msa0813840:CDS 35.0%
!! TTTTAGCATTGAGGTAGATC+TGG + chr5_3:45090730-45090749 None:intergenic 35.0%
TTCAAACTGCAACAGTGAAG+AGG - chr5_3:45088109-45088128 Msa0813840:CDS 40.0%
CAAAGGATACTCACGGTAAA+TGG - chr5_3:45088144-45088163 Msa0813840:CDS 40.0%
CTTATGTGTCTTTGTGCAAC+AGG - chr5_3:45088364-45088383 Msa0813840:intron 40.0%
GGACATTGTGTCACATAACT+AGG + chr5_3:45088429-45088448 None:intergenic 40.0%
AATGAAAGCTCCATAGACAG+TGG + chr5_3:45088544-45088563 None:intergenic 40.0%
! GGATAAGGAGAACCCATTTT+CGG + chr5_3:45088573-45088592 None:intergenic 40.0%
! GTTGGCTTAGAGAAAGGATA+AGG + chr5_3:45088588-45088607 None:intergenic 40.0%
! TCTCTAGTTGGCTTAGAGAA+AGG + chr5_3:45088594-45088613 None:intergenic 40.0%
CGACGGTCCAAATTTCAATT+CGG - chr5_3:45088743-45088762 Msa0813840:CDS 40.0%
GGCCATTGATAAAGATCGAA+TGG + chr5_3:45088815-45088834 None:intergenic 40.0%
TTTATCAATGGCCACTGATG+TGG - chr5_3:45088822-45088841 Msa0813840:CDS 40.0%
GTTTGTCTTAAGAGAGCCAT+TGG + chr5_3:45089031-45089050 None:intergenic 40.0%
GAATGATTTCAAACCTTGGC+TGG + chr5_3:45089131-45089150 None:intergenic 40.0%
GGCATAGACTTGAAAACGTA+CGG + chr5_3:45089388-45089407 None:intergenic 40.0%
!!! GTACGTTTTCAAGTCTATGC+CGG - chr5_3:45089387-45089406 Msa0813840:CDS 40.0%
TAGCAACAACAGTCATTCTG+TGG + chr5_3:45089479-45089498 None:intergenic 40.0%
CAGAATGACTGTTGTTGCTA+CGG - chr5_3:45089479-45089498 Msa0813840:intron 40.0%
TATCATGAGGACTCTAGTGT+TGG + chr5_3:45089526-45089545 None:intergenic 40.0%
AACACTAGAGTCCTCATGAT+AGG - chr5_3:45089525-45089544 Msa0813840:intron 40.0%
! AGGACATTGATTGTTTGACC+TGG + chr5_3:45089552-45089571 None:intergenic 40.0%
GTTGTCAAATGCAGCATTCA+TGG + chr5_3:45089634-45089653 None:intergenic 40.0%
! GTCTTGAAGGTGGTCTATTT+TGG + chr5_3:45089683-45089702 None:intergenic 40.0%
GCATTCACATCAAGGATTAG+AGG - chr5_3:45089750-45089769 Msa0813840:CDS 40.0%
GCACAAATCCTAATAGTCCA+AGG - chr5_3:45089847-45089866 Msa0813840:intron 40.0%
GCTGCAAATCTTGTTCCATT+TGG + chr5_3:45089882-45089901 None:intergenic 40.0%
GCTTACTATAATGGTGTTCC+TGG - chr5_3:45089954-45089973 Msa0813840:intron 40.0%
TTGAACTGTATAGGAGGAAC+AGG + chr5_3:45090002-45090021 None:intergenic 40.0%
TACACAGGAAATGTTCCTAG+GGG - chr5_3:45090023-45090042 Msa0813840:intron 40.0%
ATCACCCTATGCATGTTCAT+GGG - chr5_3:45090144-45090163 Msa0813840:intron 40.0%
GTTCCAATAGTATTCCTCAC+AGG + chr5_3:45090251-45090270 None:intergenic 40.0%
AATACTATTGGAACACCTCC+TGG - chr5_3:45090257-45090276 Msa0813840:CDS 40.0%
! ATTATCGGCGTTGAAACGAA+TGG + chr5_3:45090294-45090313 None:intergenic 40.0%
CACATATGTCAGTGTCGTAT+CGG + chr5_3:45090377-45090396 None:intergenic 40.0%
TTCACATCTCAATTGGGGTT+TGG - chr5_3:45090645-45090664 Msa0813840:CDS 40.0%
! GAGGTATCACTGACTGTAAT+GGG + chr5_3:45090702-45090721 None:intergenic 40.0%
CAAGGTCCATAATTGTACCA+AGG - chr5_3:45090850-45090869 Msa0813840:CDS 40.0%
CAAGTAATCCCAATTGACCT+TGG + chr5_3:45090870-45090889 None:intergenic 40.0%
! TGTTTCATTTGCTGCAGCAG+AGG - chr5_3:45087975-45087994 Msa0813840:three_prime_UTR 45.0%
AGAGGCTGTGCAAAACACAA+AGG - chr5_3:45088127-45088146 Msa0813840:CDS 45.0%
ACGGTAAATGGACAGTTTCC+TGG - chr5_3:45088156-45088175 Msa0813840:CDS 45.0%
CAGTGGATGGAGATGTTGTA+AGG + chr5_3:45088240-45088259 None:intergenic 45.0%
CTTACAACATCTCCATCCAC+TGG - chr5_3:45088238-45088257 Msa0813840:intron 45.0%
CGATGATAGTTACCAGTGGA+TGG + chr5_3:45088253-45088272 None:intergenic 45.0%
GTGACGATGATAGTTACCAG+TGG + chr5_3:45088257-45088276 None:intergenic 45.0%
ATCGTCACTCGTCCTCATTA+TGG - chr5_3:45088269-45088288 Msa0813840:intron 45.0%
TGTCTTTGTGCAACAGGCAT+GGG - chr5_3:45088370-45088389 Msa0813840:intron 45.0%
! TTGAGAAATCCATGGGCTGA+TGG - chr5_3:45088402-45088421 Msa0813840:intron 45.0%
ACACAATGTCCAATCCAACC+AGG - chr5_3:45088438-45088457 Msa0813840:intron 45.0%
TAACTTCCACCTGGTTGGAT+TGG + chr5_3:45088450-45088469 None:intergenic 45.0%
ATGTGTAACTTCCACCTGGT+TGG + chr5_3:45088455-45088474 None:intergenic 45.0%
ACCAAGAAGGAACACTATGG+TGG - chr5_3:45088493-45088512 Msa0813840:intron 45.0%
TTCCTAAGAGCCACTGTCTA+TGG - chr5_3:45088531-45088550 Msa0813840:CDS 45.0%
TGGCTGCATGAGATTGTTGT+TGG + chr5_3:45088704-45088723 None:intergenic 45.0%
! CTGTCGATTGGATAAGACGA+CGG - chr5_3:45088726-45088745 Msa0813840:CDS 45.0%
GGCTTACTGCGTGACTATAT+AGG - chr5_3:45088843-45088862 Msa0813840:CDS 45.0%
TACACCATGAATGGTCAACC+AGG - chr5_3:45089088-45089107 Msa0813840:CDS 45.0%
ATCTCCTGGTTGACCATTCA+TGG + chr5_3:45089095-45089114 None:intergenic 45.0%
GAACATCTGTAGAGATCTCC+TGG + chr5_3:45089109-45089128 None:intergenic 45.0%
! ATGAGGACTCTAGTGTTGGA+AGG + chr5_3:45089522-45089541 None:intergenic 45.0%
TTTGACCTGGTCCTATCATG+AGG + chr5_3:45089539-45089558 None:intergenic 45.0%
GTCAAATGCAGCATTCATGG+CGG + chr5_3:45089631-45089650 None:intergenic 45.0%
GGCAAAATAGGTCTTGAAGG+TGG + chr5_3:45089693-45089712 None:intergenic 45.0%
GCTGGCAAAATAGGTCTTGA+AGG + chr5_3:45089696-45089715 None:intergenic 45.0%
! GTGGCCGTGTCGTTAAAAAA+TGG + chr5_3:45089723-45089742 None:intergenic 45.0%
TGATGTGAATGCAGTTGCAG+TGG + chr5_3:45089742-45089761 None:intergenic 45.0%
CTGCAACTGCATTCACATCA+AGG - chr5_3:45089742-45089761 Msa0813840:CDS 45.0%
CCTTGACACCTTGGACTATT+AGG + chr5_3:45089858-45089877 None:intergenic 45.0%
! CCTAATAGTCCAAGGTGTCA+AGG - chr5_3:45089855-45089874 Msa0813840:intron 45.0%
AGGAACAGGAGGAAAATCTG+TGG + chr5_3:45089988-45090007 None:intergenic 45.0%
AACTGTATAGGAGGAACAGG+AGG + chr5_3:45089999-45090018 None:intergenic 45.0%
GAAATGTTCCTAGGGGTTTG+TGG - chr5_3:45090030-45090049 Msa0813840:intron 45.0%
GGTTTGTGGACACCTAGAAA+AGG - chr5_3:45090044-45090063 Msa0813840:intron 45.0%
GATCACCCTATGCATGTTCA+TGG - chr5_3:45090143-45090162 Msa0813840:intron 45.0%
GGAACCCATGAACATGCATA+GGG + chr5_3:45090151-45090170 None:intergenic 45.0%
TGGAACCCATGAACATGCAT+AGG + chr5_3:45090152-45090171 None:intergenic 45.0%
AACGTAGCAGGATCAGTTCT+TGG + chr5_3:45090212-45090231 None:intergenic 45.0%
CCAATAGTATTCCTCACAGG+TGG + chr5_3:45090248-45090267 None:intergenic 45.0%
CCACCTGTGAGGAATACTAT+TGG - chr5_3:45090245-45090264 Msa0813840:CDS 45.0%
GGTTCTATAGCTAGAGCACA+TGG + chr5_3:45090356-45090375 None:intergenic 45.0%
CAAGAGAGAGATATCGGACA+CGG + chr5_3:45090520-45090539 None:intergenic 45.0%
!! GGAGGTATCACTGACTGTAA+TGG + chr5_3:45090703-45090722 None:intergenic 45.0%
! TAGCATTGAGGTAGATCTGG+TGG + chr5_3:45090727-45090746 None:intergenic 45.0%
TGGTCCAACAATCGAAGCGA+GGG - chr5_3:45088176-45088195 Msa0813840:CDS 50.0%
! AGCGAGGGACGGAGATTTTA+TGG - chr5_3:45088191-45088210 Msa0813840:CDS 50.0%
GTGTCTTTGTGCAACAGGCA+TGG - chr5_3:45088369-45088388 Msa0813840:intron 50.0%
TAACTAGGTCCATCAGCCCA+TGG + chr5_3:45088414-45088433 None:intergenic 50.0%
CAATGTCCAATCCAACCAGG+TGG - chr5_3:45088441-45088460 Msa0813840:intron 50.0%
CGGTATGTGTAACTTCCACC+TGG + chr5_3:45088459-45088478 None:intergenic 50.0%
GCCACCATAGTGTTCCTTCT+TGG + chr5_3:45088497-45088516 None:intergenic 50.0%
CTCCATAGACAGTGGCTCTT+AGG + chr5_3:45088536-45088555 None:intergenic 50.0%
GTCTTATCCAATCGACAGCG+TGG + chr5_3:45088724-45088743 None:intergenic 50.0%
CTCTACAGATGTTCCAGCCA+AGG - chr5_3:45089115-45089134 Msa0813840:CDS 50.0%
AGAGTCCTCATGATAGGACC+AGG - chr5_3:45089531-45089550 Msa0813840:intron 50.0%
GTGGTTGATCAGCTGTGACA+AGG + chr5_3:45089572-45089591 None:intergenic 50.0%
ATGCAGCATTCATGGCGGTT+TGG + chr5_3:45089626-45089645 None:intergenic 50.0%
CCATTTGGTCCTTGACACCT+TGG + chr5_3:45089867-45089886 None:intergenic 50.0%
! CCAAGGTGTCAAGGACCAAA+TGG - chr5_3:45089864-45089883 Msa0813840:intron 50.0%
TCGACAAGGTTGAACGTAGC+AGG + chr5_3:45090224-45090243 None:intergenic 50.0%
ACTATTGGAACACCTCCTGG+TGG - chr5_3:45090260-45090279 Msa0813840:CDS 50.0%
CGTTTCAACGCCGATAATCC+AGG - chr5_3:45090296-45090315 Msa0813840:CDS 50.0%
! GGGTTTGGCAACAGCACTTT+TGG - chr5_3:45090660-45090679 Msa0813840:CDS 50.0%
CATTGAGGTAGATCTGGTGG+TGG + chr5_3:45090724-45090743 None:intergenic 50.0%
CTCGCTTCGATTGTTGGACC+AGG + chr5_3:45088177-45088196 None:intergenic 55.0%
CTGGTCCAACAATCGAAGCG+AGG - chr5_3:45088175-45088194 Msa0813840:CDS 55.0%
CCAACAATCGAAGCGAGGGA+CGG - chr5_3:45088180-45088199 Msa0813840:CDS 55.0%
TGTGCAACAGGCATGGGCTT+AGG - chr5_3:45088376-45088395 Msa0813840:intron 55.0%
CTATGGTGGCATGCTCACAC+TGG - chr5_3:45088507-45088526 Msa0813840:intron 55.0%
CACGCAGTAAGCCACATCAG+TGG + chr5_3:45088836-45088855 None:intergenic 55.0%
GTCACAGCTGATCAACCACC+TGG - chr5_3:45089573-45089592 Msa0813840:intron 55.0%
ACCACCTGGCCGATACTACA+TGG - chr5_3:45089587-45089606 Msa0813840:intron 55.0%
ACCTGGCCGATACTACATGG+CGG - chr5_3:45089590-45089609 Msa0813840:intron 55.0%
CTAGGTGTCCACAAACCCCT+AGG + chr5_3:45090041-45090060 None:intergenic 55.0%
ACCTTGTCGATCCACCTGTG+AGG - chr5_3:45090234-45090253 Msa0813840:CDS 55.0%
TCCTCACAGGTGGATCGACA+AGG + chr5_3:45090238-45090257 None:intergenic 55.0%
TTGGAACACCTCCTGGTGGA+TGG - chr5_3:45090264-45090283 Msa0813840:CDS 55.0%
! TGGAACACCTCCTGGTGGAT+GGG - chr5_3:45090265-45090284 Msa0813840:CDS 55.0%
!! TGAGGTAGATCTGGTGGTGG+AGG + chr5_3:45090721-45090740 None:intergenic 55.0%
CCGTCCCTCGCTTCGATTGT+TGG + chr5_3:45088183-45088202 None:intergenic 60.0%
CATGCAGCCACGCTGTCGAT+TGG - chr5_3:45088714-45088733 Msa0813840:CDS 60.0%
!! GCCATGTAGTATCGGCCAGG+TGG + chr5_3:45089591-45089610 None:intergenic 60.0%
CGCGTGCCGCCATGTAGTAT+CGG + chr5_3:45089599-45089618 None:intergenic 60.0%
! AACACCTCCTGGTGGATGGG+TGG - chr5_3:45090268-45090287 Msa0813840:CDS 60.0%
!! GCCGCCATGTAGTATCGGCC+AGG + chr5_3:45089594-45089613 None:intergenic 65.0%
ATGGCCACCCATCCACCAGG+AGG + chr5_3:45090275-45090294 None:intergenic 65.0%
CGAATGGCCACCCATCCACC+AGG + chr5_3:45090278-45090297 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 45087931 45090912 45087931 ID=Msa0813840;Name=Msa0813840
chr5_3 mRNA 45087931 45090912 45087931 ID=Msa0813840-mRNA-1;Parent=Msa0813840;Name=Msa0813840-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.4|0.16|1|1|1|6|165|559
chr5_3 exon 45087931 45088226 45087931 ID=Msa0813840-mRNA-1:exon:13864;Parent=Msa0813840-mRNA-1
chr5_3 exon 45088526 45089461 45088526 ID=Msa0813840-mRNA-1:exon:13863;Parent=Msa0813840-mRNA-1
chr5_3 exon 45089707 45089835 45089707 ID=Msa0813840-mRNA-1:exon:13862;Parent=Msa0813840-mRNA-1
chr5_3 exon 45090213 45090457 45090213 ID=Msa0813840-mRNA-1:exon:13861;Parent=Msa0813840-mRNA-1
chr5_3 exon 45090584 45090735 45090584 ID=Msa0813840-mRNA-1:exon:13860;Parent=Msa0813840-mRNA-1
chr5_3 exon 45090826 45090912 45090826 ID=Msa0813840-mRNA-1:exon:13859;Parent=Msa0813840-mRNA-1
chr5_3 CDS 45090826 45090912 45090826 ID=Msa0813840-mRNA-1:cds;Parent=Msa0813840-mRNA-1
chr5_3 CDS 45090584 45090735 45090584 ID=Msa0813840-mRNA-1:cds;Parent=Msa0813840-mRNA-1
chr5_3 CDS 45090213 45090457 45090213 ID=Msa0813840-mRNA-1:cds;Parent=Msa0813840-mRNA-1
chr5_3 CDS 45089707 45089835 45089707 ID=Msa0813840-mRNA-1:cds;Parent=Msa0813840-mRNA-1
chr5_3 CDS 45088526 45089461 45088526 ID=Msa0813840-mRNA-1:cds;Parent=Msa0813840-mRNA-1
chr5_3 CDS 45088096 45088226 45088096 ID=Msa0813840-mRNA-1:cds;Parent=Msa0813840-mRNA-1
chr5_3 three_prime_UTR 45087931 45088095 45087931 ID=Msa0813840-mRNA-1:three_prime_utr;Parent=Msa0813840-mRNA-1
Gene Sequence

>Msa0813840

ATGAAGACTATTTTATGCTACTTACTTGGCTTACTTACTATCATTGTTTCATTTGCTGCAGCAGAGGAGCATTACCATCAGTTTGTTATTCAAACTGCAACAGTGAAGAGGCTGTGCAAAACACAAAGGATACTCACGGTAAATGGACAGTTTCCTGGTCCAACAATCGAAGCGAGGGACGGAGATTTTATGGTGATCAAAGTAACAAATGCTGGACCTTACAACATCTCCATCCACTGGCATGGGCTTAGGATGTTGAGAAATCCATGGGCTGATGGACCTAGTTATGTGACACAATGTCCAATCCAACCAGGTGGAAGTTACACATACCGATTTACAATTCAAAACCAAGAAGGAACACTATGGTGGCATGCTCACACTGGTTTCCTAAGAGCCACTGTCTATGGAGCTTTCATTATTTATCCGAAAATGGGTTCTCCTTATCCTTTCTCTAAGCCAACTAGAGAATTTCCCATTCTTCTTGGGGAATGGTTTGATAGAGATCCAATGGCTCTCTTAAGACAAACACAGTTCACAGGAGCACCTCCAAATGTATCTATTGCATACACCATGAATGGTCAACCAGGAGATCTCTACAGATGTTCCAGCCAAGGAACCGTACGTTTTCAAGTCTATGCCGGAGAAACAATTCTCTTAAGAATCATCAACAGTGCACTCAATCAAGAACTCTTCTTTTCAATTGCTAACCACAGAATGACTGTTGTTGCTACGGATGCTGCTTACACAAAACCTTCCAACACTAGAGTCCTCATGATAGGACCAGGTCAAACAATCAATGTCCTTGTCACAGCTGATCAACCACCTGGCCGATACTACATGGCGGCACGCGCTTACCAAACCGCCATGAATGCTGCATTTGACAACACGACGACAACTGCAATTCTTGAATACCAAAATAGACCACCTTCAAGACCTATTTTGCCAGCTTTACCATTTTTTAACGACACGGCCACTGCAACTGCATTCACATCAAGGATTAGAGGACTTTCCAAAATTAAAGTCTTTCAAAATGTTGATGTGAGTTTATTGTTCACTGTAGGGTTAGGATTAATAAACTGCACAAATCCTAATAGTCCAAGGTGTCAAGGACCAAATGGAACAAGATTTGCAGCTAGTATAAACAACAACTCTTTTGTTCTTCCTAGAACAACTTCCTTAATGCAAGCTTACTATAATGGTGTTCCTGGTGTTTTTACCACAGATTTTCCTCCTGTTCCTCCTATACAGTTCAATTACACAGGAAATGTTCCTAGGGGTTTGTGGACACCTAGAAAAGGAACCAAGTTGTTCAAGTTGAAATATGGTTCCAATGTTCAGATTGTTTTGCAGGATACTAGTATAGTAACAATTGAGGATCACCCTATGCATGTTCATGGGTTCCATTTCTTTATAGTTGGTTCAGGTTTTGGAAATTTTAATCCAAGAACTGATCCTGCTACGTTCAACCTTGTCGATCCACCTGTGAGGAATACTATTGGAACACCTCCTGGTGGATGGGTGGCCATTCGTTTCAACGCCGATAATCCAGGAATTTGGTTCTTGCATTGTCACATAGATTCACATCTCAATTGGGGTTTGGCAACAGCACTTTTGGTAGAAAATGGAGTTGGCCCATTACAGTCAGTGATACCTCCACCACCAGATCTACCTCAATGCTAA

Protein sequence

>Msa0813840

MKTILCYLLGLLTIIVSFAAAEEHYHQFVIQTATVKRLCKTQRILTVNGQFPGPTIEARDGDFMVIKVTNAGPYNISIHWHGLRMLRNPWADGPSYVTQCPIQPGGSYTYRFTIQNQEGTLWWHAHTGFLRATVYGAFIIYPKMGSPYPFSKPTREFPILLGEWFDRDPMALLRQTQFTGAPPNVSIAYTMNGQPGDLYRCSSQGTVRFQVYAGETILLRIINSALNQELFFSIANHRMTVVATDAAYTKPSNTRVLMIGPGQTINVLVTADQPPGRYYMAARAYQTAMNAAFDNTTTTAILEYQNRPPSRPILPALPFFNDTATATAFTSRIRGLSKIKVFQNVDVSLLFTVGLGLINCTNPNSPRCQGPNGTRFAASINNNSFVLPRTTSLMQAYYNGVPGVFTTDFPPVPPIQFNYTGNVPRGLWTPRKGTKLFKLKYGSNVQIVLQDTSIVTIEDHPMHVHGFHFFIVGSGFGNFNPRTDPATFNLVDPPVRNTIGTPPGGWVAIRFNADNPGIWFLHCHIDSHLNWGLATALLVENGVGPLQSVIPPPPDLPQC*