Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1052390 | XP_003621757.1 | 99.335 | 451 | 3 | 0 | 1 | 451 | 1 | 451 | 0.0 | 922 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1052390 | sp|Q8LJW3|ACR4_ARATH | 57.395 | 453 | 180 | 6 | 7 | 451 | 4 | 451 | 0.0 | 519 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1052390 | G7KUS8 | 99.335 | 451 | 3 | 0 | 1 | 451 | 1 | 451 | 0.0 | 922 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005350 | Msa1052390 | 0.810753 | 9.856675e-51 | -8.615850e-47 |
| Msa0053900 | Msa1052390 | 0.813634 | 2.317499e-51 | -8.615850e-47 |
| Msa0069260 | Msa1052390 | 0.816186 | 6.296233e-52 | -8.615850e-47 |
| Msa0069280 | Msa1052390 | 0.816817 | 4.547619e-52 | -8.615850e-47 |
| Msa0069310 | Msa1052390 | 0.830324 | 3.130473e-55 | -8.615850e-47 |
| Msa0097990 | Msa1052390 | 0.800015 | 1.757407e-48 | -8.615850e-47 |
| Msa0099730 | Msa1052390 | 0.801771 | 7.692888e-49 | -8.615850e-47 |
| Msa0610370 | Msa1052390 | 0.809889 | 1.513704e-50 | -8.615850e-47 |
| Msa0650900 | Msa1052390 | 0.805653 | 1.203005e-49 | -8.615850e-47 |
| Msa0669850 | Msa1052390 | 0.804104 | 2.534922e-49 | -8.615850e-47 |
| Msa0693380 | Msa1052390 | 0.802153 | 6.422098e-49 | -8.615850e-47 |
| Msa0743680 | Msa1052390 | 0.811108 | 8.257121e-51 | -8.615850e-47 |
| Msa0791820 | Msa1052390 | 0.802088 | 6.623402e-49 | -8.615850e-47 |
| Msa0148360 | Msa1052390 | 0.812122 | 4.969589e-51 | -8.615850e-47 |
| Msa0172350 | Msa1052390 | 0.819530 | 1.106679e-52 | -8.615850e-47 |
| Msa0219070 | Msa1052390 | 0.806520 | 7.904777e-50 | -8.615850e-47 |
| Msa0377530 | Msa1052390 | 0.811063 | 8.445081e-51 | -8.615850e-47 |
| Msa0467960 | Msa1052390 | -0.800520 | 1.387040e-48 | -8.615850e-47 |
| Msa1010800 | Msa1052390 | 0.920992 | 6.331077e-88 | -8.615850e-47 |
| Msa1052390 | Msa1085300 | 0.800280 | 1.551788e-48 | -8.615850e-47 |
| Msa1052390 | Msa1140670 | 0.886838 | 2.413749e-72 | -8.615850e-47 |
| Msa1052390 | Msa1236070 | -0.801381 | 9.248779e-49 | -8.615850e-47 |
| Msa1052390 | Msa1303160 | 0.802919 | 4.463882e-49 | -8.615850e-47 |
| Msa1052390 | Msa1390310 | 0.809744 | 1.626459e-50 | -8.615850e-47 |
| Msa0267760 | Msa1052390 | 0.813185 | 2.909317e-51 | -8.615850e-47 |
| Msa0506940 | Msa1052390 | 0.803729 | 3.034086e-49 | -8.615850e-47 |
| Msa0517490 | Msa1052390 | 0.819550 | 1.094877e-52 | -8.615850e-47 |
| Msa0526710 | Msa1052390 | 0.815599 | 8.511761e-52 | -8.615850e-47 |
| Msa0531990 | Msa1052390 | -0.807246 | 5.550121e-50 | -8.615850e-47 |
| Msa0532100 | Msa1052390 | -0.813794 | 2.136778e-51 | -8.615850e-47 |
| Msa0535030 | Msa1052390 | 0.804482 | 2.114942e-49 | -8.615850e-47 |
| Msa0535060 | Msa1052390 | 0.806378 | 8.468779e-50 | -8.615850e-47 |
| Msa0555950 | Msa1052390 | 0.802630 | 5.121086e-49 | -8.615850e-47 |
| Msa0855430 | Msa1052390 | 0.804146 | 2.484576e-49 | -8.615850e-47 |
| Msa0863800 | Msa1052390 | 0.801695 | 7.976188e-49 | -8.615850e-47 |
| Msa0874500 | Msa1052390 | 0.816090 | 6.613737e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1052390 | MtrunA17_Chr7g0222461 | 99.335 | 451 | 3 | 0 | 1 | 451 | 1 | 451 | 0.0 | 922 |
| Msa1052390 | MtrunA17_Chr5g0420221 | 58.758 | 451 | 173 | 6 | 4 | 451 | 11 | 451 | 1.99e-180 | 511 |
| Msa1052390 | MtrunA17_Chr7g0224571 | 56.250 | 448 | 184 | 5 | 10 | 451 | 1 | 442 | 1.46e-175 | 499 |
| Msa1052390 | MtrunA17_Chr3g0125661 | 55.012 | 409 | 172 | 5 | 10 | 409 | 9 | 414 | 3.00e-157 | 452 |
| Msa1052390 | MtrunA17_Chr5g0398581 | 51.794 | 446 | 197 | 5 | 12 | 451 | 8 | 441 | 1.40e-153 | 443 |
| Msa1052390 | MtrunA17_Chr1g0159541 | 51.786 | 448 | 197 | 8 | 10 | 441 | 9 | 453 | 1.55e-153 | 443 |
| Msa1052390 | MtrunA17_Chr4g0056741 | 50.998 | 451 | 193 | 5 | 12 | 451 | 8 | 441 | 6.65e-153 | 441 |
| Msa1052390 | MtrunA17_Chr5g0400941 | 43.662 | 426 | 217 | 6 | 10 | 413 | 9 | 433 | 9.58e-121 | 360 |
| Msa1052390 | MtrunA17_Chr4g0054261 | 37.500 | 472 | 263 | 6 | 10 | 449 | 28 | 499 | 1.34e-97 | 301 |
| Msa1052390 | MtrunA17_Chr7g0264801 | 22.905 | 358 | 240 | 11 | 36 | 371 | 20 | 363 | 4.83e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1052390 | AT1G69040.1 | 57.395 | 453 | 180 | 6 | 7 | 451 | 4 | 451 | 0.0 | 519 |
| Msa1052390 | AT1G69040.2 | 57.395 | 453 | 180 | 6 | 7 | 451 | 8 | 455 | 0.0 | 519 |
| Msa1052390 | AT3G01990.7 | 58.040 | 398 | 161 | 4 | 11 | 407 | 17 | 409 | 7.75e-164 | 469 |
| Msa1052390 | AT3G01990.5 | 58.040 | 398 | 161 | 4 | 11 | 407 | 17 | 409 | 7.75e-164 | 469 |
| Msa1052390 | AT3G01990.10 | 58.040 | 398 | 161 | 4 | 11 | 407 | 3 | 395 | 9.73e-164 | 469 |
| Msa1052390 | AT3G01990.1 | 58.040 | 398 | 161 | 4 | 11 | 407 | 3 | 395 | 9.73e-164 | 469 |
| Msa1052390 | AT3G01990.6 | 58.040 | 398 | 161 | 4 | 11 | 407 | 17 | 409 | 1.24e-163 | 469 |
| Msa1052390 | AT3G01990.11 | 58.040 | 398 | 161 | 4 | 11 | 407 | 3 | 395 | 1.81e-163 | 468 |
| Msa1052390 | AT2G03730.2 | 53.846 | 455 | 192 | 7 | 7 | 449 | 8 | 456 | 5.94e-161 | 462 |
| Msa1052390 | AT2G03730.1 | 53.846 | 455 | 192 | 7 | 7 | 449 | 8 | 456 | 5.94e-161 | 462 |
| Msa1052390 | AT1G76990.4 | 55.501 | 409 | 169 | 4 | 10 | 409 | 9 | 413 | 2.55e-160 | 461 |
| Msa1052390 | AT1G76990.5 | 55.501 | 409 | 169 | 4 | 10 | 409 | 9 | 413 | 2.55e-160 | 461 |
| Msa1052390 | AT1G76990.2 | 55.501 | 409 | 169 | 4 | 10 | 409 | 9 | 413 | 2.55e-160 | 461 |
| Msa1052390 | AT1G76990.3 | 55.501 | 409 | 169 | 4 | 10 | 409 | 9 | 413 | 2.55e-160 | 461 |
| Msa1052390 | AT1G76990.1 | 55.501 | 409 | 169 | 4 | 10 | 409 | 9 | 413 | 2.55e-160 | 461 |
| Msa1052390 | AT1G12420.1 | 50.667 | 450 | 196 | 8 | 12 | 451 | 8 | 441 | 2.53e-142 | 414 |
| Msa1052390 | AT5G25320.1 | 43.763 | 489 | 220 | 11 | 10 | 444 | 9 | 496 | 3.34e-138 | 406 |
| Msa1052390 | AT4G22780.1 | 47.174 | 460 | 201 | 11 | 12 | 449 | 8 | 447 | 1.56e-134 | 395 |
| Msa1052390 | AT4G22780.1 | 30.409 | 171 | 104 | 2 | 10 | 178 | 218 | 375 | 2.71e-11 | 65.9 |
| Msa1052390 | AT4G22780.2 | 47.174 | 460 | 201 | 11 | 12 | 449 | 8 | 447 | 1.56e-134 | 395 |
| Msa1052390 | AT4G22780.2 | 30.409 | 171 | 104 | 2 | 10 | 178 | 218 | 375 | 2.71e-11 | 65.9 |
| Msa1052390 | AT5G25320.3 | 44.105 | 458 | 203 | 9 | 39 | 444 | 1 | 457 | 7.38e-134 | 394 |
| Msa1052390 | AT3G01990.4 | 57.057 | 333 | 137 | 4 | 11 | 342 | 17 | 344 | 1.69e-128 | 376 |
| Msa1052390 | AT3G01990.9 | 57.057 | 333 | 137 | 4 | 11 | 342 | 3 | 330 | 1.85e-128 | 375 |
| Msa1052390 | AT3G01990.2 | 57.622 | 328 | 133 | 4 | 11 | 337 | 17 | 339 | 3.22e-128 | 375 |
| Msa1052390 | AT5G65890.1 | 45.863 | 423 | 204 | 9 | 10 | 409 | 10 | 430 | 3.31e-121 | 362 |
| Msa1052390 | AT5G65890.3 | 45.863 | 423 | 204 | 9 | 10 | 409 | 10 | 430 | 3.31e-121 | 362 |
| Msa1052390 | AT1G12420.2 | 49.091 | 385 | 170 | 8 | 77 | 451 | 1 | 369 | 1.52e-110 | 331 |
| Msa1052390 | AT3G01990.3 | 54.762 | 294 | 125 | 3 | 11 | 302 | 17 | 304 | 3.50e-106 | 318 |
| Msa1052390 | AT3G01990.8 | 54.762 | 294 | 125 | 3 | 11 | 302 | 3 | 290 | 6.23e-106 | 317 |
| Msa1052390 | AT5G25320.2 | 43.169 | 366 | 169 | 8 | 10 | 337 | 9 | 373 | 4.40e-102 | 309 |
| Msa1052390 | AT5G65890.4 | 43.684 | 380 | 189 | 9 | 53 | 409 | 1 | 378 | 5.45e-102 | 311 |
| Msa1052390 | AT5G65890.2 | 43.684 | 380 | 189 | 9 | 53 | 409 | 1 | 378 | 5.45e-102 | 311 |
| Msa1052390 | AT5G65890.5 | 43.791 | 306 | 154 | 6 | 120 | 409 | 13 | 316 | 2.91e-83 | 261 |
| Msa1052390 | AT2G39570.1 | 23.229 | 353 | 246 | 11 | 37 | 371 | 21 | 366 | 2.53e-11 | 65.9 |
Find 106 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTTGTACCTTTGAAAAT+TGG | 0.118377 | 7_2:-20619397 | None:intergenic |
| TTCTGTTCTGTTTCAAACTA+TGG | 0.197312 | 7_2:+20619508 | Msa1052390:exon |
| ATCTGATGGTGGATGGTTTA+TGG | 0.205537 | 7_2:+20619934 | Msa1052390:CDS |
| TTTCATGTTACTGATCAAAA+TGG | 0.211096 | 7_2:+20620106 | Msa1052390:CDS |
| TTCACTCTTAACTGGATTTC+CGG | 0.229487 | 7_2:-20622471 | None:intergenic |
| AGAAGCTTATTTCAAACTTT+TGG | 0.244045 | 7_2:-20622908 | None:intergenic |
| TCAATTGTTTCACTCTTAAC+TGG | 0.271268 | 7_2:-20622479 | None:intergenic |
| GGTGTAAAGCTCGAACTTTC+CGG | 0.271281 | 7_2:+20622320 | Msa1052390:CDS |
| CAGAACAACAACTTTGATAA+AGG | 0.291767 | 7_2:+20619724 | Msa1052390:CDS |
| TTTATCTAGGCATGTTTCAT+TGG | 0.353143 | 7_2:+20622818 | Msa1052390:three_prime_UTR |
| CCGCTACCACATTGCATTTG+AGG | 0.353645 | 7_2:-20620889 | None:intergenic |
| TCTTTGTACCTTTGAAAATT+GGG | 0.357409 | 7_2:-20619396 | None:intergenic |
| GTTGATGATTGCATCGATAA+AGG | 0.360000 | 7_2:+20621199 | Msa1052390:CDS |
| GAGAGGTTTCTTTACAATCT+AGG | 0.372115 | 7_2:+20622620 | Msa1052390:CDS |
| AATAGTAACTTCGGTCGATC+TGG | 0.375903 | 7_2:-20621247 | None:intergenic |
| CATACAACGATCGAGTTAAC+AGG | 0.395123 | 7_2:+20620818 | Msa1052390:CDS |
| TGTGTTTGCTGAGGAACTCT+TGG | 0.403517 | 7_2:+20619287 | None:intergenic |
| GATCGGAAGCTACGAACTCT+TGG | 0.409696 | 7_2:-20620758 | None:intergenic |
| TGAAGGAACAGAAGCATATC+AGG | 0.414309 | 7_2:+20621330 | Msa1052390:CDS |
| AAGACTTCTGAAAGCAATCC+TGG | 0.415942 | 7_2:-20620851 | None:intergenic |
| CTTTCTGCTTCAGAACTGAT+TGG | 0.421013 | 7_2:-20621897 | None:intergenic |
| TCGAGTTAACAGGACGAGAT+AGG | 0.422142 | 7_2:+20620828 | Msa1052390:CDS |
| ATGTGGTAGCGGCTGAAGTC+TGG | 0.424346 | 7_2:+20620900 | Msa1052390:CDS |
| TCTCTTTACGTGATCTCGTT+AGG | 0.427447 | 7_2:+20622588 | Msa1052390:CDS |
| TTATCTAGGCATGTTTCATT+GGG | 0.431278 | 7_2:+20622819 | Msa1052390:three_prime_UTR |
| CATAGAAAACATTCATGGCT+TGG | 0.432509 | 7_2:-20622436 | None:intergenic |
| AGGAACTCTTGGCCCTGCTT+AGG | 0.432776 | 7_2:+20619298 | Msa1052390:five_prime_UTR |
| AGATGCCATTCTTGAATTGT+GGG | 0.433835 | 7_2:-20620924 | None:intergenic |
| TTCATGTTACTGATCAAAAT+GGG | 0.434204 | 7_2:+20620107 | Msa1052390:CDS |
| ATTTGGTTGGGAGATAGAAT+TGG | 0.446485 | 7_2:-20619344 | None:intergenic |
| TTAATCTTGGCAAGGCGGTC+AGG | 0.450576 | 7_2:-20620992 | None:intergenic |
| TGTCACATAGAAAACATTCA+TGG | 0.454766 | 7_2:-20622441 | None:intergenic |
| CAGATGCCATTCTTGAATTG+TGG | 0.456206 | 7_2:-20620925 | None:intergenic |
| TGTAGCTGATAGAATTCAAC+AGG | 0.458713 | 7_2:+20620150 | Msa1052390:CDS |
| AGATAGAATTGGTGAGATGA+TGG | 0.465467 | 7_2:-20619333 | None:intergenic |
| TCAATTGATGTATGCTGATC+GGG | 0.471630 | 7_2:+20621111 | Msa1052390:CDS |
| CGGGATTATGACATATATGA+TGG | 0.473270 | 7_2:+20621130 | Msa1052390:CDS |
| AAGCAGAAGATGCTTAATCT+TGG | 0.477322 | 7_2:-20621005 | None:intergenic |
| ATATTTCATCTGATGGTGGA+TGG | 0.481369 | 7_2:+20619927 | Msa1052390:CDS |
| TACATCACCGACGACACAAC+AGG | 0.487849 | 7_2:+20620953 | Msa1052390:CDS |
| TAATAAACGTGGTAGTTTGT+TGG | 0.488332 | 7_2:+20619856 | Msa1052390:CDS |
| ATAGAAAACATTCATGGCTT+GGG | 0.492504 | 7_2:-20622435 | None:intergenic |
| GCAAAGAGTAATTCACTGCT+TGG | 0.493494 | 7_2:+20621920 | Msa1052390:CDS |
| GATAGAATTGGTGAGATGAT+GGG | 0.501454 | 7_2:-20619332 | None:intergenic |
| ACATGTTATTGTTACCTTGG+TGG | 0.506079 | 7_2:-20619593 | None:intergenic |
| GTACCTCAGAAGTTCGCCTT+CGG | 0.506198 | 7_2:-20621953 | None:intergenic |
| GAAAATTTAACTGCAAATGT+TGG | 0.508292 | 7_2:+20622941 | Msa1052390:three_prime_UTR |
| ACTCGCATCTTTAGAGAAAA+CGG | 0.512341 | 7_2:+20622374 | Msa1052390:CDS |
| AGAGCTTATATTTCATCTGA+TGG | 0.514352 | 7_2:+20619920 | Msa1052390:CDS |
| TTTGTTCGACTCACAAGGAT+AGG | 0.516487 | 7_2:+20621080 | Msa1052390:CDS |
| ATTGGTGAGATGATGGGGTA+GGG | 0.517260 | 7_2:-20619326 | None:intergenic |
| AGGCTGTTCGAAAAGAGATC+GGG | 0.523994 | 7_2:+20622501 | Msa1052390:CDS |
| GAGGCTGTTCGAAAAGAGAT+CGG | 0.525177 | 7_2:+20622500 | Msa1052390:CDS |
| GATATACCGTCGTGAATTTG+AGG | 0.531940 | 7_2:+20621221 | Msa1052390:CDS |
| GCTTGGAGGCTGCTGTCCGA+AGG | 0.534469 | 7_2:+20621937 | Msa1052390:CDS |
| CGGCAATCCTGTTGTGTCGT+CGG | 0.534641 | 7_2:-20620960 | None:intergenic |
| TGCGAGTTACATCAGACAAA+AGG | 0.535705 | 7_2:-20622358 | None:intergenic |
| GTAGCTTCCGATCCGTGAGA+AGG | 0.538013 | 7_2:+20620768 | Msa1052390:CDS |
| CTTCAGCATTGACAGTTCCA+TGG | 0.546213 | 7_2:-20621312 | None:intergenic |
| GGTAGGGTGGCTCCTAAGCA+GGG | 0.549461 | 7_2:-20619310 | None:intergenic |
| AAGAGTAATTCACTGCTTGG+AGG | 0.549558 | 7_2:+20621923 | Msa1052390:CDS |
| ATAGAATTGGTGAGATGATG+GGG | 0.550082 | 7_2:-20619331 | None:intergenic |
| CTGGACCCACAATTCAAGAA+TGG | 0.550217 | 7_2:+20620919 | Msa1052390:CDS |
| CGCGCTGAGGTCACGACAAG+AGG | 0.553071 | 7_2:+20622410 | Msa1052390:CDS |
| CCTCAAATGCAATGTGGTAG+CGG | 0.554458 | 7_2:+20620889 | Msa1052390:CDS |
| CAATCAGTTCTGAAGCAGAA+AGG | 0.556036 | 7_2:+20621898 | Msa1052390:CDS |
| TTCTATGTGACAGATGTGTC+CGG | 0.558668 | 7_2:+20622452 | Msa1052390:CDS |
| CATGCTTAAAATCTCCTACC+CGG | 0.562239 | 7_2:+20622552 | Msa1052390:CDS |
| TTTCAAATTCATCATCAAGA+GGG | 0.563709 | 7_2:-20619550 | None:intergenic |
| ATGCTTAAAATCTCCTACCC+GGG | 0.565650 | 7_2:+20622553 | Msa1052390:CDS |
| AATTGGTGAGATGATGGGGT+AGG | 0.566950 | 7_2:-20619327 | None:intergenic |
| AAGGCCAACTCTGTCTTCAC+CGG | 0.577698 | 7_2:-20622339 | None:intergenic |
| GTTCGACTCACAAGGATAGG+AGG | 0.577855 | 7_2:+20621083 | Msa1052390:CDS |
| AAATCTCCTACCCGGGAGAG+TGG | 0.578530 | 7_2:+20622560 | Msa1052390:CDS |
| TGTCCGAAGGCGAACTTCTG+AGG | 0.586828 | 7_2:+20621950 | Msa1052390:CDS |
| ATCAATTGATGTATGCTGAT+CGG | 0.588153 | 7_2:+20621110 | Msa1052390:CDS |
| AGTTAAGAGTGAAACAATTG+AGG | 0.598247 | 7_2:+20622481 | Msa1052390:CDS |
| TATTACATAAGGCATGTGGA+TGG | 0.599573 | 7_2:+20621870 | Msa1052390:CDS |
| TAGATTGTAAAGAAACCTCT+CGG | 0.604791 | 7_2:-20622618 | None:intergenic |
| GGTGAGATGATGGGGTAGGG+TGG | 0.605342 | 7_2:-20619323 | None:intergenic |
| CCTTTCAGTCTGCCGCGCTG+AGG | 0.608957 | 7_2:+20622397 | Msa1052390:CDS |
| CTTTCCGGTGAAGACAGAGT+TGG | 0.609309 | 7_2:+20622335 | Msa1052390:CDS |
| TTAACAGGACGAGATAGGCC+AGG | 0.610170 | 7_2:+20620833 | Msa1052390:CDS |
| CATGGAACTGTCAATGCTGA+AGG | 0.610676 | 7_2:+20621313 | Msa1052390:CDS |
| TGTCGGTGTTCAAGCTGCAG+CGG | 0.618267 | 7_2:+20620793 | Msa1052390:CDS |
| CGACAGACCTTCTCACGGAT+CGG | 0.618439 | 7_2:-20620775 | None:intergenic |
| GCTTATATTTCATCTGATGG+TGG | 0.619057 | 7_2:+20619923 | Msa1052390:CDS |
| AGGCGGTCAGGATTGTCGAT+CGG | 0.626180 | 7_2:-20620980 | None:intergenic |
| GGAATATTACATAAGGCATG+TGG | 0.628289 | 7_2:+20621866 | Msa1052390:intron |
| GATGGTGGATGGTTTATGGA+TGG | 0.634152 | 7_2:+20619938 | Msa1052390:CDS |
| CGATCCGTGAGAAGGTCTGT+CGG | 0.637568 | 7_2:+20620776 | Msa1052390:CDS |
| GAAGATGCTTAATCTTGGCA+AGG | 0.637572 | 7_2:-20621000 | None:intergenic |
| AGTGTTGTGTTGTGTCTCTG+TGG | 0.638496 | 7_2:-20619434 | None:intergenic |
| AACACCGACAGACCTTCTCA+CGG | 0.640709 | 7_2:-20620780 | None:intergenic |
| ACGGTATCGAATAGTAACTT+CGG | 0.652560 | 7_2:-20621256 | None:intergenic |
| CATGTCTGTGATAGTACACA+CGG | 0.656721 | 7_2:-20621275 | None:intergenic |
| CTTCTGCTTTATGTGCTGAG+AGG | 0.660385 | 7_2:+20621019 | Msa1052390:CDS |
| ATGCAGTATGTTGTGTACCA+TGG | 0.674170 | 7_2:+20621295 | Msa1052390:CDS |
| AGACAACAAGTATATGACAC+AGG | 0.684297 | 7_2:-20622860 | None:intergenic |
| GATGCTTAATCTTGGCAAGG+CGG | 0.685591 | 7_2:-20620997 | None:intergenic |
| GTTGATAGTGCTAATAAACG+TGG | 0.727553 | 7_2:+20619845 | Msa1052390:CDS |
| TGCTGACCTCAAATGCAATG+TGG | 0.737650 | 7_2:+20620883 | Msa1052390:CDS |
| TGGACACCTCAAATTCACGA+CGG | 0.751563 | 7_2:-20621227 | None:intergenic |
| TCGTTAGGTCGAGATCCGAG+AGG | 0.772248 | 7_2:+20622603 | Msa1052390:CDS |
| CTCTTGTCGTGACCTCAGCG+CGG | 0.773509 | 7_2:-20622409 | None:intergenic |
| TAATTCGTATGAATCCACCA+AGG | 0.787268 | 7_2:+20619579 | Msa1052390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATATTAAAAAACACAA+TGG | - | chr7_2:20620021-20620040 | None:intergenic | 10.0% |
| !!! | TTGATATTTTCTTATTTTAT+CGG | + | chr7_2:20620269-20620288 | Msa1052390:intron | 10.0% |
| !!! | TTTGAAATTTAAACCTTATA+AGG | + | chr7_2:20619747-20619766 | Msa1052390:intron | 15.0% |
| !! | AAATGAAGAATTATTGTAAA+TGG | - | chr7_2:20619977-20619996 | None:intergenic | 15.0% |
| !!! | ATTTGTTATGATTGTAATTT+AGG | + | chr7_2:20620219-20620238 | Msa1052390:intron | 15.0% |
| !!! | GAATTTTTTTTATATCAAGT+AGG | + | chr7_2:20621548-20621567 | Msa1052390:intron | 15.0% |
| !! | TTTCTCTCATTAATTATTTA+CGG | + | chr7_2:20622080-20622099 | Msa1052390:intron | 15.0% |
| !!! | TTGTATGTTTTTGTATTTTG+TGG | + | chr7_2:20619674-20619693 | Msa1052390:intron | 20.0% |
| !! | TCAAAGATTATAACCTTATA+AGG | - | chr7_2:20619763-20619782 | None:intergenic | 20.0% |
| !! | AATCTTTGATGAATTTCAAA+AGG | + | chr7_2:20619774-20619793 | Msa1052390:intron | 20.0% |
| !! | ATCTTTGATGAATTTCAAAA+GGG | + | chr7_2:20619775-20619794 | Msa1052390:intron | 20.0% |
| !!! | CTTTTATATTGTGGTAAAAT+CGG | - | chr7_2:20620420-20620439 | None:intergenic | 20.0% |
| !!! | TCAATTTTCATCATACTATT+CGG | + | chr7_2:20620507-20620526 | Msa1052390:intron | 20.0% |
| !!! | AAAAAAAAAAGTACTAGTTC+TGG | - | chr7_2:20620666-20620685 | None:intergenic | 20.0% |
| !!! | AACTAGTACTTTTTTTTTTG+AGG | + | chr7_2:20620667-20620686 | Msa1052390:intron | 20.0% |
| !!! | GTTATTAGTAAACAAAGTTT+TGG | - | chr7_2:20620706-20620725 | None:intergenic | 20.0% |
| !!! | TGTTTACTAATAACACTTTT+TGG | + | chr7_2:20620712-20620731 | Msa1052390:intron | 20.0% |
| !!! | GATATTTTTAAAATACCGTT+CGG | - | chr7_2:20621459-20621478 | None:intergenic | 20.0% |
| !! | AAAATGGATAAAATTAGCAA+AGG | - | chr7_2:20621577-20621596 | None:intergenic | 20.0% |
| !!! | GTATTTCATTTCAATTTGTT+TGG | + | chr7_2:20621746-20621765 | Msa1052390:intron | 20.0% |
| !!! | TTTTACAGGAATATTACATA+AGG | + | chr7_2:20621859-20621878 | Msa1052390:intron | 20.0% |
| !!! | TTTTTTACTTTTGCTAAAAC+AGG | - | chr7_2:20622000-20622019 | None:intergenic | 20.0% |
| !!! | AGTTAACTTGTATTTGATAT+AGG | + | chr7_2:20622298-20622317 | Msa1052390:intron | 20.0% |
| !!! | GTTAACTTGTATTTGATATA+GGG | + | chr7_2:20622299-20622318 | Msa1052390:intron | 20.0% |
| !!! | TTTAGTTTCAACTAGAATTT+AGG | + | chr7_2:20622703-20622722 | Msa1052390:intron | 20.0% |
| !!! | GATTTGTGTTTTTTTTTTGG+GGG | - | chr7_2:20619377-20619396 | None:intergenic | 25.0% |
| !!! | GGATTTGTGTTTTTTTTTTG+GGG | - | chr7_2:20619378-20619397 | None:intergenic | 25.0% |
| !!! | GGGATTTGTGTTTTTTTTTT+GGG | - | chr7_2:20619379-20619398 | None:intergenic | 25.0% |
| !!! | TGGGATTTGTGTTTTTTTTT+TGG | - | chr7_2:20619380-20619399 | None:intergenic | 25.0% |
| !! | TCTTTGTACCTTTGAAAATT+GGG | - | chr7_2:20619399-20619418 | None:intergenic | 25.0% |
| !! | TTCTTTGTACCTTTGAAAAT+TGG | - | chr7_2:20619400-20619419 | None:intergenic | 25.0% |
| !! | TGTTTCAAACTATGGATTTT+TGG | + | chr7_2:20619516-20619535 | Msa1052390:exon | 25.0% |
| ! | TTTCAAATTCATCATCAAGA+GGG | - | chr7_2:20619553-20619572 | None:intergenic | 25.0% |
| !! | TTTTCAAATTCATCATCAAG+AGG | - | chr7_2:20619554-20619573 | None:intergenic | 25.0% |
| !! | TTTTCATGTGAATTTTGTGT+AGG | + | chr7_2:20619823-20619842 | Msa1052390:intron | 25.0% |
| ! | GAAGAATTATTGTAAATGGT+AGG | - | chr7_2:20619973-20619992 | None:intergenic | 25.0% |
| ! | TTTCATGTTACTGATCAAAA+TGG | + | chr7_2:20620106-20620125 | Msa1052390:CDS | 25.0% |
| ! | TTCATGTTACTGATCAAAAT+GGG | + | chr7_2:20620107-20620126 | Msa1052390:CDS | 25.0% |
| ! | TAGATCTGTGTAATATTCAT+CGG | + | chr7_2:20620176-20620195 | Msa1052390:intron | 25.0% |
| !! | TGTGATCAACTTTTATATTG+TGG | - | chr7_2:20620429-20620448 | None:intergenic | 25.0% |
| ! | AAGAGTAATAGAAACTATCA+TGG | - | chr7_2:20620460-20620479 | None:intergenic | 25.0% |
| ! | TTAGTTACAAACTAGATACA+AGG | + | chr7_2:20621502-20621521 | Msa1052390:intron | 25.0% |
| !!! | AAAAGATTTTTTTTCCCTGA+TGG | - | chr7_2:20621631-20621650 | None:intergenic | 25.0% |
| ! | TTTAATGATAACTTGAGTGA+TGG | - | chr7_2:20621816-20621835 | None:intergenic | 25.0% |
| !! | AAACAGGTATTAATTTGGAA+CGG | - | chr7_2:20621984-20622003 | None:intergenic | 25.0% |
| ! | TGCTAAAACAGGTATTAATT+TGG | - | chr7_2:20621989-20622008 | None:intergenic | 25.0% |
| ! | CTTGCATTTATCAATAAAGA+GGG | + | chr7_2:20622152-20622171 | Msa1052390:intron | 25.0% |
| ! | TACGCAAATATTAAGAAAAG+AGG | - | chr7_2:20622182-20622201 | None:intergenic | 25.0% |
| ! | TTTGTCACTAAAAATACTGA+TGG | - | chr7_2:20622279-20622298 | None:intergenic | 25.0% |
| !!! | TAGATTGTAGAGTTTTATCT+AGG | + | chr7_2:20622805-20622824 | Msa1052390:three_prime_UTR | 25.0% |
| !! | AGAAGCTTATTTCAAACTTT+TGG | - | chr7_2:20622911-20622930 | None:intergenic | 25.0% |
| ! | ACACAAATCCCAATTTTCAA+AGG | + | chr7_2:20619388-20619407 | Msa1052390:five_prime_UTR | 30.0% |
| TTCTGTTCTGTTTCAAACTA+TGG | + | chr7_2:20619508-20619527 | Msa1052390:exon | 30.0% | |
| AGAACATGTTATTGTTACCT+TGG | - | chr7_2:20619599-20619618 | None:intergenic | 30.0% | |
| CAGAACAACAACTTTGATAA+AGG | + | chr7_2:20619724-20619743 | Msa1052390:CDS | 30.0% | |
| ! | TAATAAACGTGGTAGTTTGT+TGG | + | chr7_2:20619856-20619875 | Msa1052390:CDS | 30.0% |
| AGAGCTTATATTTCATCTGA+TGG | + | chr7_2:20619920-20619939 | Msa1052390:CDS | 30.0% | |
| ATCATCCTATTCCAATCAAA+AGG | - | chr7_2:20620546-20620565 | None:intergenic | 30.0% | |
| ATCAATTGATGTATGCTGAT+CGG | + | chr7_2:20621110-20621129 | Msa1052390:CDS | 30.0% | |
| !!! | TGTGTTTTGCTTTGTTTTAC+AGG | + | chr7_2:20621845-20621864 | Msa1052390:intron | 30.0% |
| GATGTGTTAGAATGATAAAG+CGG | - | chr7_2:20622039-20622058 | None:intergenic | 30.0% | |
| GCTTGCATTTATCAATAAAG+AGG | + | chr7_2:20622151-20622170 | Msa1052390:intron | 30.0% | |
| ATAGAAAACATTCATGGCTT+GGG | - | chr7_2:20622438-20622457 | None:intergenic | 30.0% | |
| TGTCACATAGAAAACATTCA+TGG | - | chr7_2:20622444-20622463 | None:intergenic | 30.0% | |
| TCAATTGTTTCACTCTTAAC+TGG | - | chr7_2:20622482-20622501 | None:intergenic | 30.0% | |
| AGTTAAGAGTGAAACAATTG+AGG | + | chr7_2:20622481-20622500 | Msa1052390:CDS | 30.0% | |
| TAGATTGTAAAGAAACCTCT+CGG | - | chr7_2:20622621-20622640 | None:intergenic | 30.0% | |
| CCATAAAATACTACAATGTG+AGG | - | chr7_2:20622740-20622759 | None:intergenic | 30.0% | |
| ! | CCTCACATTGTAGTATTTTA+TGG | + | chr7_2:20622737-20622756 | Msa1052390:intron | 30.0% |
| TTTATCTAGGCATGTTTCAT+TGG | + | chr7_2:20622818-20622837 | Msa1052390:three_prime_UTR | 30.0% | |
| TTATCTAGGCATGTTTCATT+GGG | + | chr7_2:20622819-20622838 | Msa1052390:three_prime_UTR | 30.0% | |
| ATAGAATTGGTGAGATGATG+GGG | - | chr7_2:20619334-20619353 | None:intergenic | 35.0% | |
| GATAGAATTGGTGAGATGAT+GGG | - | chr7_2:20619335-20619354 | None:intergenic | 35.0% | |
| AGATAGAATTGGTGAGATGA+TGG | - | chr7_2:20619336-20619355 | None:intergenic | 35.0% | |
| ATTTGGTTGGGAGATAGAAT+TGG | - | chr7_2:20619347-20619366 | None:intergenic | 35.0% | |
| !!! | TGTTTTTTTTTTGGGGGCTT+TGG | - | chr7_2:20619371-20619390 | None:intergenic | 35.0% |
| !!! | TGTGTGTGTGTGTTTTTTTG+GGG | - | chr7_2:20619474-20619493 | None:intergenic | 35.0% |
| !!! | GTGTGTGTGTGTGTTTTTTT+GGG | - | chr7_2:20619475-20619494 | None:intergenic | 35.0% |
| !!! | TGTGTGTGTGTGTGTTTTTT+TGG | - | chr7_2:20619476-20619495 | None:intergenic | 35.0% |
| TAATTCGTATGAATCCACCA+AGG | + | chr7_2:20619579-20619598 | Msa1052390:CDS | 35.0% | |
| ACATGTTATTGTTACCTTGG+TGG | - | chr7_2:20619596-20619615 | None:intergenic | 35.0% | |
| !! | GTTGATAGTGCTAATAAACG+TGG | + | chr7_2:20619845-20619864 | Msa1052390:CDS | 35.0% |
| GCTTATATTTCATCTGATGG+TGG | + | chr7_2:20619923-20619942 | Msa1052390:CDS | 35.0% | |
| !! | ATATTTCATCTGATGGTGGA+TGG | + | chr7_2:20619927-20619946 | Msa1052390:CDS | 35.0% |
| TGTAGCTGATAGAATTCAAC+AGG | + | chr7_2:20620150-20620169 | Msa1052390:CDS | 35.0% | |
| AAGCATATTTCCATGATTCC+CGG | + | chr7_2:20620323-20620342 | Msa1052390:intron | 35.0% | |
| ! | TTTAGCCATTGCCTTTTGAT+TGG | + | chr7_2:20620532-20620551 | Msa1052390:intron | 35.0% |
| CTATTCCAATCAAAAGGCAA+TGG | - | chr7_2:20620540-20620559 | None:intergenic | 35.0% | |
| !! | CATTGCCTTTTGATTGGAAT+AGG | + | chr7_2:20620538-20620557 | Msa1052390:intron | 35.0% |
| AGATGCCATTCTTGAATTGT+GGG | - | chr7_2:20620927-20620946 | None:intergenic | 35.0% | |
| AAGCAGAAGATGCTTAATCT+TGG | - | chr7_2:20621008-20621027 | None:intergenic | 35.0% | |
| TCAATTGATGTATGCTGATC+GGG | + | chr7_2:20621111-20621130 | Msa1052390:CDS | 35.0% | |
| CGGGATTATGACATATATGA+TGG | + | chr7_2:20621130-20621149 | Msa1052390:CDS | 35.0% | |
| !! | GTTGATGATTGCATCGATAA+AGG | + | chr7_2:20621199-20621218 | Msa1052390:CDS | 35.0% |
| ! | ACGGTATCGAATAGTAACTT+CGG | - | chr7_2:20621259-20621278 | None:intergenic | 35.0% |
| GTCATTCATGTTCTTGCAAT+TGG | + | chr7_2:20621356-20621375 | Msa1052390:intron | 35.0% | |
| AGAGAAGCTCAAAATAAGTC+AGG | - | chr7_2:20621413-20621432 | None:intergenic | 35.0% | |
| ! | CGGCTTAACATCTTCTTTTA+AGG | - | chr7_2:20621439-20621458 | None:intergenic | 35.0% |
| AAAGAAGATGTTAAGCCGAA+CGG | + | chr7_2:20621441-20621460 | Msa1052390:intron | 35.0% | |
| TCAAATTCGATCATTCCATC+AGG | + | chr7_2:20621613-20621632 | Msa1052390:intron | 35.0% | |
| CAAATTCGATCATTCCATCA+GGG | + | chr7_2:20621614-20621633 | Msa1052390:intron | 35.0% | |
| GGAATATTACATAAGGCATG+TGG | + | chr7_2:20621866-20621885 | Msa1052390:intron | 35.0% | |
| TATTACATAAGGCATGTGGA+TGG | + | chr7_2:20621870-20621889 | Msa1052390:CDS | 35.0% | |
| ! | AGGTATTAATTTGGAACGGA+GGG | - | chr7_2:20621980-20621999 | None:intergenic | 35.0% |
| ! | ACCTTAAACGACTGTTGATT+TGG | + | chr7_2:20622205-20622224 | Msa1052390:intron | 35.0% |
| TCCAAATCAACAGTCGTTTA+AGG | - | chr7_2:20622209-20622228 | None:intergenic | 35.0% | |
| TGTGAGTACTACATATGACA+TGG | + | chr7_2:20622230-20622249 | Msa1052390:intron | 35.0% | |
| ! | ACTCGCATCTTTAGAGAAAA+CGG | + | chr7_2:20622374-20622393 | Msa1052390:CDS | 35.0% |
| CATAGAAAACATTCATGGCT+TGG | - | chr7_2:20622439-20622458 | None:intergenic | 35.0% | |
| TTCACTCTTAACTGGATTTC+CGG | - | chr7_2:20622474-20622493 | None:intergenic | 35.0% | |
| GAGAGGTTTCTTTACAATCT+AGG | + | chr7_2:20622620-20622639 | Msa1052390:CDS | 35.0% | |
| AGACAACAAGTATATGACAC+AGG | - | chr7_2:20622863-20622882 | None:intergenic | 35.0% | |
| !!! | TTTTTGGGGGCTTTGGAATT+TGG | - | chr7_2:20619364-20619383 | None:intergenic | 40.0% |
| ! | ATTTTGTGGCAGAGTAACTG+TGG | + | chr7_2:20619688-20619707 | Msa1052390:intron | 40.0% |
| !! | ATCTGATGGTGGATGGTTTA+TGG | + | chr7_2:20619934-20619953 | Msa1052390:CDS | 40.0% |
| CAGCAATAAATCGGTCTCAA+AGG | + | chr7_2:20620353-20620372 | Msa1052390:intron | 40.0% | |
| TGTGGTAAAATCGGCAAATG+TGG | - | chr7_2:20620411-20620430 | None:intergenic | 40.0% | |
| ! | GTTTTCTTGTTCCAGTCACT+CGG | + | chr7_2:20620734-20620753 | Msa1052390:intron | 40.0% |
| CATACAACGATCGAGTTAAC+AGG | + | chr7_2:20620818-20620837 | Msa1052390:CDS | 40.0% | |
| ! | AAGACTTCTGAAAGCAATCC+TGG | - | chr7_2:20620854-20620873 | None:intergenic | 40.0% |
| CAGATGCCATTCTTGAATTG+TGG | - | chr7_2:20620928-20620947 | None:intergenic | 40.0% | |
| GAAGATGCTTAATCTTGGCA+AGG | - | chr7_2:20621003-20621022 | None:intergenic | 40.0% | |
| !! | TTCGTTTTGTTCGACTCACA+AGG | + | chr7_2:20621075-20621094 | Msa1052390:CDS | 40.0% |
| TTTGTTCGACTCACAAGGAT+AGG | + | chr7_2:20621080-20621099 | Msa1052390:CDS | 40.0% | |
| GATATACCGTCGTGAATTTG+AGG | + | chr7_2:20621221-20621240 | Msa1052390:CDS | 40.0% | |
| AATAGTAACTTCGGTCGATC+TGG | - | chr7_2:20621250-20621269 | None:intergenic | 40.0% | |
| CATGTCTGTGATAGTACACA+CGG | - | chr7_2:20621278-20621297 | None:intergenic | 40.0% | |
| ATGCAGTATGTTGTGTACCA+TGG | + | chr7_2:20621295-20621314 | Msa1052390:CDS | 40.0% | |
| ! | TGAAGGAACAGAAGCATATC+AGG | + | chr7_2:20621330-20621349 | Msa1052390:CDS | 40.0% |
| TAGAAAGGATGCGTCAGAAT+AGG | - | chr7_2:20621780-20621799 | None:intergenic | 40.0% | |
| CTTTCTGCTTCAGAACTGAT+TGG | - | chr7_2:20621900-20621919 | None:intergenic | 40.0% | |
| !! | CAATCAGTTCTGAAGCAGAA+AGG | + | chr7_2:20621898-20621917 | Msa1052390:CDS | 40.0% |
| GCAAAGAGTAATTCACTGCT+TGG | + | chr7_2:20621920-20621939 | Msa1052390:CDS | 40.0% | |
| AAGAGTAATTCACTGCTTGG+AGG | + | chr7_2:20621923-20621942 | Msa1052390:CDS | 40.0% | |
| ! | CAGGTATTAATTTGGAACGG+AGG | - | chr7_2:20621981-20622000 | None:intergenic | 40.0% |
| TGCGAGTTACATCAGACAAA+AGG | - | chr7_2:20622361-20622380 | None:intergenic | 40.0% | |
| TTCTATGTGACAGATGTGTC+CGG | + | chr7_2:20622452-20622471 | Msa1052390:CDS | 40.0% | |
| CATGCTTAAAATCTCCTACC+CGG | + | chr7_2:20622552-20622571 | Msa1052390:CDS | 40.0% | |
| ATGCTTAAAATCTCCTACCC+GGG | + | chr7_2:20622553-20622572 | Msa1052390:CDS | 40.0% | |
| ! | AAGAGAATTTTCCACTCTCC+CGG | - | chr7_2:20622574-20622593 | None:intergenic | 40.0% |
| TCTCTTTACGTGATCTCGTT+AGG | + | chr7_2:20622588-20622607 | Msa1052390:CDS | 40.0% | |
| !! | ATTGGTGAGATGATGGGGTA+GGG | - | chr7_2:20619329-20619348 | None:intergenic | 45.0% |
| !! | AATTGGTGAGATGATGGGGT+AGG | - | chr7_2:20619330-20619349 | None:intergenic | 45.0% |
| AGTGTTGTGTTGTGTCTCTG+TGG | - | chr7_2:20619437-20619456 | None:intergenic | 45.0% | |
| !! | GATGGTGGATGGTTTATGGA+TGG | + | chr7_2:20619938-20619957 | Msa1052390:CDS | 45.0% |
| CGACATCACAACCACAATTG+CGG | + | chr7_2:20620385-20620404 | Msa1052390:intron | 45.0% | |
| TCGAGTTAACAGGACGAGAT+AGG | + | chr7_2:20620828-20620847 | Msa1052390:CDS | 45.0% | |
| TGCTGACCTCAAATGCAATG+TGG | + | chr7_2:20620883-20620902 | Msa1052390:CDS | 45.0% | |
| CCTCAAATGCAATGTGGTAG+CGG | + | chr7_2:20620889-20620908 | Msa1052390:CDS | 45.0% | |
| CTGGACCCACAATTCAAGAA+TGG | + | chr7_2:20620919-20620938 | Msa1052390:CDS | 45.0% | |
| GATGCTTAATCTTGGCAAGG+CGG | - | chr7_2:20621000-20621019 | None:intergenic | 45.0% | |
| CTTCTGCTTTATGTGCTGAG+AGG | + | chr7_2:20621019-20621038 | Msa1052390:CDS | 45.0% | |
| TGGACACCTCAAATTCACGA+CGG | - | chr7_2:20621230-20621249 | None:intergenic | 45.0% | |
| !! | CTTCAGCATTGACAGTTCCA+TGG | - | chr7_2:20621315-20621334 | None:intergenic | 45.0% |
| CATGGAACTGTCAATGCTGA+AGG | + | chr7_2:20621313-20621332 | Msa1052390:CDS | 45.0% | |
| GGACTCATAAGCTGGTAGAA+AGG | - | chr7_2:20621795-20621814 | None:intergenic | 45.0% | |
| !! | TGAGTGATGGACTCATAAGC+TGG | - | chr7_2:20621803-20621822 | None:intergenic | 45.0% |
| TGCAAGCTCGATAATGTCGT+TGG | - | chr7_2:20622138-20622157 | None:intergenic | 45.0% | |
| GGTGTAAAGCTCGAACTTTC+CGG | + | chr7_2:20622320-20622339 | Msa1052390:CDS | 45.0% | |
| GAGGCTGTTCGAAAAGAGAT+CGG | + | chr7_2:20622500-20622519 | Msa1052390:CDS | 45.0% | |
| AGGCTGTTCGAAAAGAGATC+GGG | + | chr7_2:20622501-20622520 | Msa1052390:CDS | 45.0% | |
| ! | CGGGTAGGAGATTTTAAGCA+TGG | - | chr7_2:20622554-20622573 | None:intergenic | 45.0% |
| ! | AGAGAATTTTCCACTCTCCC+GGG | - | chr7_2:20622573-20622592 | None:intergenic | 45.0% |
| !! | GTTAAATATTAATAATAAAA+TGG | - | chr7_2:20621593-20621612 | None:intergenic | 5.0% |
| !! | GGGGGCTTTGGAATTTGGTT+GGG | - | chr7_2:20619359-20619378 | None:intergenic | 50.0% |
| !! | TGGGGGCTTTGGAATTTGGT+TGG | - | chr7_2:20619360-20619379 | None:intergenic | 50.0% |
| ! | AGACCGATTTATTGCTGCCG+CGG | - | chr7_2:20620350-20620369 | None:intergenic | 50.0% |
| GATCGGAAGCTACGAACTCT+TGG | - | chr7_2:20620761-20620780 | None:intergenic | 50.0% | |
| AACACCGACAGACCTTCTCA+CGG | - | chr7_2:20620783-20620802 | None:intergenic | 50.0% | |
| TTAACAGGACGAGATAGGCC+AGG | + | chr7_2:20620833-20620852 | Msa1052390:CDS | 50.0% | |
| CCGCTACCACATTGCATTTG+AGG | - | chr7_2:20620892-20620911 | None:intergenic | 50.0% | |
| TACATCACCGACGACACAAC+AGG | + | chr7_2:20620953-20620972 | Msa1052390:CDS | 50.0% | |
| TTAATCTTGGCAAGGCGGTC+AGG | - | chr7_2:20620995-20621014 | None:intergenic | 50.0% | |
| GTTCGACTCACAAGGATAGG+AGG | + | chr7_2:20621083-20621102 | Msa1052390:CDS | 50.0% | |
| GTACCTCAGAAGTTCGCCTT+CGG | - | chr7_2:20621956-20621975 | None:intergenic | 50.0% | |
| CTTTCCGGTGAAGACAGAGT+TGG | + | chr7_2:20622335-20622354 | Msa1052390:CDS | 50.0% | |
| AAGGCCAACTCTGTCTTCAC+CGG | - | chr7_2:20622342-20622361 | None:intergenic | 50.0% | |
| ! | AATTTTCCACTCTCCCGGGT+AGG | - | chr7_2:20622569-20622588 | None:intergenic | 50.0% |
| AGGAACTCTTGGCCCTGCTT+AGG | + | chr7_2:20619298-20619317 | Msa1052390:five_prime_UTR | 55.0% | |
| TTTCCATGATTCCCGGTCCG+CGG | + | chr7_2:20620330-20620349 | Msa1052390:intron | 55.0% | |
| ATTTATTGCTGCCGCGGACC+GGG | - | chr7_2:20620344-20620363 | None:intergenic | 55.0% | |
| GATTTATTGCTGCCGCGGAC+CGG | - | chr7_2:20620345-20620364 | None:intergenic | 55.0% | |
| GGTCCGCGGCAGCAATAAAT+CGG | + | chr7_2:20620344-20620363 | Msa1052390:intron | 55.0% | |
| GGCAAATGTGGCCGCAATTG+TGG | - | chr7_2:20620399-20620418 | None:intergenic | 55.0% | |
| GAACTCTTGGACCGAGTGAC+TGG | - | chr7_2:20620748-20620767 | None:intergenic | 55.0% | |
| GTAGCTTCCGATCCGTGAGA+AGG | + | chr7_2:20620768-20620787 | Msa1052390:CDS | 55.0% | |
| CGACAGACCTTCTCACGGAT+CGG | - | chr7_2:20620778-20620797 | None:intergenic | 55.0% | |
| CGATCCGTGAGAAGGTCTGT+CGG | + | chr7_2:20620776-20620795 | Msa1052390:CDS | 55.0% | |
| ! | TGTCGGTGTTCAAGCTGCAG+CGG | + | chr7_2:20620793-20620812 | Msa1052390:CDS | 55.0% |
| !! | ATGTGGTAGCGGCTGAAGTC+TGG | + | chr7_2:20620900-20620919 | Msa1052390:CDS | 55.0% |
| CGGCAATCCTGTTGTGTCGT+CGG | - | chr7_2:20620963-20620982 | None:intergenic | 55.0% | |
| AGGCGGTCAGGATTGTCGAT+CGG | - | chr7_2:20620983-20621002 | None:intergenic | 55.0% | |
| TGTCCGAAGGCGAACTTCTG+AGG | + | chr7_2:20621950-20621969 | Msa1052390:CDS | 55.0% | |
| AAATCTCCTACCCGGGAGAG+TGG | + | chr7_2:20622560-20622579 | Msa1052390:CDS | 55.0% | |
| TCGTTAGGTCGAGATCCGAG+AGG | + | chr7_2:20622603-20622622 | Msa1052390:CDS | 55.0% | |
| GGTAGGGTGGCTCCTAAGCA+GGG | - | chr7_2:20619313-20619332 | None:intergenic | 60.0% | |
| !! | GGTGAGATGATGGGGTAGGG+TGG | - | chr7_2:20619326-20619345 | None:intergenic | 60.0% |
| CTCTTGTCGTGACCTCAGCG+CGG | - | chr7_2:20622412-20622431 | None:intergenic | 60.0% | |
| GGGTAGGGTGGCTCCTAAGC+AGG | - | chr7_2:20619314-20619333 | None:intergenic | 65.0% | |
| GCTTGGAGGCTGCTGTCCGA+AGG | + | chr7_2:20621937-20621956 | Msa1052390:CDS | 65.0% | |
| CCTCAGCGCGGCAGACTGAA+AGG | - | chr7_2:20622400-20622419 | None:intergenic | 65.0% | |
| CCTTTCAGTCTGCCGCGCTG+AGG | + | chr7_2:20622397-20622416 | Msa1052390:CDS | 65.0% | |
| CGCGCTGAGGTCACGACAAG+AGG | + | chr7_2:20622410-20622429 | Msa1052390:CDS | 65.0% | |
| CTGCCGCGGACCGGGAATCA+TGG | - | chr7_2:20620336-20620355 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 20619297 | 20622963 | 20619297 | ID=Msa1052390;Name=Msa1052390 |
| chr7_2 | mRNA | 20619297 | 20622963 | 20619297 | ID=Msa1052390-mRNA-1;Parent=Msa1052390;Name=Msa1052390-mRNA-1;_AED=0.15;_eAED=0.15;_QI=230|1|1|1|0.85|0.75|8|255|451 |
| chr7_2 | exon | 20619297 | 20619600 | 20619297 | ID=Msa1052390-mRNA-1:exon:4644;Parent=Msa1052390-mRNA-1 |
| chr7_2 | exon | 20619700 | 20619745 | 20619700 | ID=Msa1052390-mRNA-1:exon:4645;Parent=Msa1052390-mRNA-1 |
| chr7_2 | exon | 20619845 | 20619959 | 20619845 | ID=Msa1052390-mRNA-1:exon:4646;Parent=Msa1052390-mRNA-1 |
| chr7_2 | exon | 20620104 | 20620171 | 20620104 | ID=Msa1052390-mRNA-1:exon:4647;Parent=Msa1052390-mRNA-1 |
| chr7_2 | exon | 20620749 | 20621351 | 20620749 | ID=Msa1052390-mRNA-1:exon:4648;Parent=Msa1052390-mRNA-1 |
| chr7_2 | exon | 20621867 | 20621971 | 20621867 | ID=Msa1052390-mRNA-1:exon:4649;Parent=Msa1052390-mRNA-1 |
| chr7_2 | exon | 20622320 | 20622708 | 20622320 | ID=Msa1052390-mRNA-1:exon:4650;Parent=Msa1052390-mRNA-1 |
| chr7_2 | exon | 20622753 | 20622963 | 20622753 | ID=Msa1052390-mRNA-1:exon:4651;Parent=Msa1052390-mRNA-1 |
| chr7_2 | five_prime_UTR | 20619297 | 20619526 | 20619297 | ID=Msa1052390-mRNA-1:five_prime_utr;Parent=Msa1052390-mRNA-1 |
| chr7_2 | CDS | 20619527 | 20619600 | 20619527 | ID=Msa1052390-mRNA-1:cds;Parent=Msa1052390-mRNA-1 |
| chr7_2 | CDS | 20619700 | 20619745 | 20619700 | ID=Msa1052390-mRNA-1:cds;Parent=Msa1052390-mRNA-1 |
| chr7_2 | CDS | 20619845 | 20619959 | 20619845 | ID=Msa1052390-mRNA-1:cds;Parent=Msa1052390-mRNA-1 |
| chr7_2 | CDS | 20620104 | 20620171 | 20620104 | ID=Msa1052390-mRNA-1:cds;Parent=Msa1052390-mRNA-1 |
| chr7_2 | CDS | 20620749 | 20621351 | 20620749 | ID=Msa1052390-mRNA-1:cds;Parent=Msa1052390-mRNA-1 |
| chr7_2 | CDS | 20621867 | 20621971 | 20621867 | ID=Msa1052390-mRNA-1:cds;Parent=Msa1052390-mRNA-1 |
| chr7_2 | CDS | 20622320 | 20622664 | 20622320 | ID=Msa1052390-mRNA-1:cds;Parent=Msa1052390-mRNA-1 |
| chr7_2 | three_prime_UTR | 20622665 | 20622708 | 20622665 | ID=Msa1052390-mRNA-1:three_prime_utr;Parent=Msa1052390-mRNA-1 |
| chr7_2 | three_prime_UTR | 20622753 | 20622963 | 20622753 | ID=Msa1052390-mRNA-1:three_prime_utr;Parent=Msa1052390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
