AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1085300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1085300 MtrunA17_Chr3g0104071 98.142 323 4 2 1 322 1 322 0.0 660
Msa1085300 MtrunA17_Chr5g0429521 67.173 329 79 9 1 322 1 307 1.64e-149 422
Msa1085300 MtrunA17_Chr7g0241761 54.630 324 112 11 5 316 11 311 1.46e-105 311
Msa1085300 MtrunA17_Chr5g0436501 64.975 197 55 4 27 221 16 200 1.68e-82 251
Msa1085300 MtrunA17_Chr1g0162081 51.813 193 86 2 35 221 4 195 1.29e-60 195
Msa1085300 MtrunA17_Chr1g0210471 45.528 246 110 7 41 285 22 244 2.84e-59 190
Msa1085300 MtrunA17_Chr4g0062741 46.667 210 75 4 43 221 8 211 2.86e-52 174
Msa1085300 MtrunA17_Chr8g0365011 38.776 196 85 4 40 221 5 179 1.08e-36 133
Msa1085300 MtrunA17_Chr2g0331031 48.322 149 59 5 143 274 104 251 6.15e-33 124
Msa1085300 MtrunA17_Chr4g0055931 60.000 100 38 1 122 221 71 168 4.81e-32 122
Msa1085300 MtrunA17_Chr6g0488471 73.611 72 19 0 142 213 91 162 3.81e-31 118
Msa1085300 MtrunA17_Chr8g0389241 70.270 74 21 1 140 213 97 169 2.90e-30 115
Msa1085300 MtrunA17_Chr5g0415191 68.966 87 25 1 135 221 91 175 4.27e-30 116
Msa1085300 MtrunA17_Chr4g0059701 61.702 94 32 1 136 229 72 161 1.43e-28 111
Msa1085300 MtrunA17_Chr3g0092621 53.846 91 39 1 148 238 84 171 3.09e-25 99.8
Msa1085300 MtrunA17_Chr5g0440731 50.980 102 44 3 118 216 77 175 1.96e-24 100
Msa1085300 MtrunA17_Chr8g0364741 37.778 135 71 2 35 165 2 127 2.56e-24 95.9
Msa1085300 MtrunA17_Chr5g0440741 65.714 70 20 2 150 216 102 170 1.48e-23 98.2
Msa1085300 MtrunA17_Chr3g0135671 58.025 81 27 2 145 218 88 168 1.51e-23 96.7
Msa1085300 MtrunA17_Chr5g0409841 61.333 75 26 2 144 216 88 161 1.40e-22 94.4
Msa1085300 MtrunA17_Chr5g0432921 36.000 175 88 5 35 204 13 168 1.66e-22 94.0
Msa1085300 MtrunA17_Chr5g0432941 35.263 190 90 8 20 204 7 168 4.53e-22 92.4
Msa1085300 MtrunA17_Chr6g0452791 77.083 48 11 0 148 195 80 127 2.23e-20 86.7
Msa1085300 MtrunA17_Chr5g0409831 60.526 76 27 1 144 216 73 148 2.33e-20 88.2
Msa1085300 MtrunA17_Chr5g0404101 50.000 68 34 0 38 105 14 81 1.13e-19 82.4
Msa1085300 MtrunA17_Chr3g0144631 57.576 66 28 0 43 108 16 81 1.32e-19 81.6
Msa1085300 MtrunA17_Chr1g0155181 52.857 70 33 0 40 109 4 73 2.11e-19 81.3
Msa1085300 MtrunA17_Chr3g0141601 48.052 77 40 0 40 116 4 80 7.18e-19 80.1
Msa1085300 MtrunA17_Chr8g0373111 52.778 72 33 1 40 111 2 72 8.06e-19 79.3
Msa1085300 MtrunA17_Chr8g0373121 52.778 72 33 1 40 111 2 72 8.06e-19 79.3
Msa1085300 MtrunA17_Chr8g0373131 54.412 68 30 1 40 107 2 68 9.17e-19 79.3
Msa1085300 MtrunA17_Chr8g0364731 61.194 67 24 1 157 221 10 76 1.00e-18 82.4
Msa1085300 MtrunA17_Chr6g0449111 49.254 67 34 0 40 106 7 73 7.30e-16 71.6
Msa1085300 MtrunA17_Chr5g0404301 55.738 61 26 1 43 103 4 63 1.98e-15 70.1
Msa1085300 MtrunA17_Chr8g0373101 52.174 69 31 2 43 111 5 71 2.05e-15 70.1
Msa1085300 MtrunA17_Chr3g0081631 50.704 71 34 1 36 105 3 73 1.15e-14 68.6
Msa1085300 MtrunA17_Chr7g0255841 52.308 65 31 0 47 111 16 80 2.01e-14 68.2
Msa1085300 MtrunA17_Chr3g0113121 50.667 75 30 1 150 217 97 171 3.00e-14 70.9
Msa1085300 MtrunA17_Chr1g0192061 52.113 71 29 2 150 216 63 132 1.93e-13 67.8
Msa1085300 MtrunA17_Chr8g0370121 43.056 72 36 2 145 212 97 167 1.28e-11 63.5
Msa1085300 MtrunA17_Chr3g0141641 41.667 72 42 0 43 114 3 74 1.55e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1085300 AT5G58900.1 69.500 200 52 3 27 219 15 212 2.51e-96 287
Msa1085300 AT2G38090.1 62.332 223 57 4 5 217 5 210 3.62e-95 284
Msa1085300 AT5G05790.2 63.874 191 62 3 39 228 27 211 5.69e-79 242
Msa1085300 AT5G05790.1 63.874 191 62 3 39 228 27 211 5.69e-79 242
Msa1085300 AT3G11280.2 55.000 240 83 6 43 270 33 259 5.21e-78 239
Msa1085300 AT3G11280.1 55.000 240 83 6 43 270 33 259 5.21e-78 239
Msa1085300 AT5G01200.1 57.843 204 66 5 27 217 19 215 3.07e-73 227
Msa1085300 AT5G08520.1 51.075 186 90 1 37 221 6 191 7.24e-58 189
Msa1085300 AT1G49010.1 47.716 197 78 3 43 216 8 202 1.64e-51 173
Msa1085300 AT5G04760.1 49.162 179 79 3 40 218 3 169 7.81e-51 168
Msa1085300 AT5G23650.1 43.386 189 101 2 37 221 7 193 7.03e-42 148
Msa1085300 AT5G47390.1 59.140 93 38 0 128 220 76 168 9.97e-32 122
Msa1085300 AT3G10580.2 35.714 224 109 8 43 254 8 208 9.54e-31 117
Msa1085300 AT3G10580.1 35.714 224 109 8 43 254 8 208 1.34e-30 117
Msa1085300 AT4G09450.1 40.116 172 82 3 42 213 6 156 2.00e-29 112
Msa1085300 AT5G61620.1 54.206 107 45 1 118 224 82 184 8.33e-29 113
Msa1085300 AT5G56840.1 57.609 92 36 2 134 224 79 168 1.06e-27 108
Msa1085300 AT3G16350.1 60.784 102 30 2 128 229 125 216 2.07e-27 110
Msa1085300 AT1G70000.1 68.354 79 23 1 135 213 87 163 3.99e-27 107
Msa1085300 AT1G70000.2 68.354 79 23 1 135 213 87 163 3.99e-27 107
Msa1085300 AT1G74840.2 57.692 104 42 1 143 244 91 194 6.23e-26 103
Msa1085300 AT1G74840.1 57.692 104 42 1 143 244 91 194 9.51e-26 103
Msa1085300 AT1G19000.2 62.791 86 31 1 144 228 98 183 2.56e-25 103
Msa1085300 AT1G19000.1 62.791 86 31 1 144 228 98 183 2.56e-25 103
Msa1085300 AT1G75250.2 54.667 75 34 0 33 107 2 76 3.97e-21 86.7
Msa1085300 AT1G75250.1 54.667 75 34 0 33 107 2 76 5.91e-21 87.0
Msa1085300 AT3G10590.1 37.017 181 98 7 40 213 4 175 6.07e-20 86.7
Msa1085300 AT2G21650.1 52.174 69 33 0 43 111 14 82 2.09e-17 77.0
Msa1085300 AT4G39250.1 46.377 69 37 0 43 111 14 82 6.76e-16 72.8
Msa1085300 AT1G19510.1 55.738 61 27 0 47 107 16 76 1.16e-15 72.0
Msa1085300 AT2G18328.1 51.613 62 30 0 47 108 15 76 3.17e-12 62.0
Msa1085300 AT4G36570.1 61.364 44 17 0 43 86 12 55 8.09e-11 57.4

Find 94 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCATGAGTCTTCTTATTT+TGG 0.078101 7_2:+85807244 Msa1085300:CDS
TTTCACCTTTCATAGGTTTA+AGG 0.140387 7_2:-85807550 None:intergenic
ATTCAAGACTATTACCTTAT+TGG 0.153260 7_2:-85805515 None:intergenic
TATTGAGTTATTTATTATTA+TGG 0.169866 7_2:+85807350 Msa1085300:three_prime_UTR
TTAGTTAGTTATTGCCTTCT+TGG 0.174768 7_2:+85807475 Msa1085300:three_prime_UTR
TCTTTCTGCTATTTCCAAAT+TGG 0.206893 7_2:+85805245 Msa1085300:five_prime_UTR
ATTTGACAGGTTATTTCTAT+TGG 0.210653 7_2:+85806820 Msa1085300:intron
TTGAATGTGAAAACCCAATT+TGG 0.228567 7_2:-85805259 None:intergenic
GGAGTTAATAATAGCTCTTA+TGG 0.233949 7_2:+85807184 Msa1085300:CDS
TCTTGCACAAGTTGGTTTCT+AGG 0.236929 7_2:+85805478 Msa1085300:five_prime_UTR
GGTTTCTAGGGTTATCTTAT+TGG 0.255506 7_2:+85805491 Msa1085300:five_prime_UTR
TATTTCATCAGACAACTTTC+AGG 0.257079 7_2:+85806938 Msa1085300:CDS
CTTGAATATCAATATCAATT+TGG 0.270388 7_2:+85805531 Msa1085300:five_prime_UTR
GGAAAATCAATTAGAAATAA+AGG 0.272315 7_2:-85805312 None:intergenic
TTAGATTGGGTGAATTCTTC+TGG 0.292652 7_2:+85806201 Msa1085300:CDS
AAACCAATTGTTGGTATAGT+TGG 0.296807 7_2:-85805923 None:intergenic
TCTGGTTATGATGGATTTAG+AGG 0.305731 7_2:+85806219 Msa1085300:CDS
TTCACCCAATCTAAGGTAAA+AGG 0.308169 7_2:-85806192 None:intergenic
CTTTCTGCTATTTCCAAATT+GGG 0.309736 7_2:+85805246 Msa1085300:five_prime_UTR
GCTGGTTTGGTTCCAATTCC+TGG 0.315843 7_2:+85806147 Msa1085300:CDS
GGTGCATGAGGGTGAGAATT+TGG 0.327156 7_2:-85805886 None:intergenic
TTGCAGCTTTCACCTTTCAT+AGG 0.331595 7_2:-85807557 None:intergenic
CCTTTCTTCCTTTCCTGATC+AGG 0.333627 7_2:-85806276 None:intergenic
TTTGACAGGTTATTTCTATT+GGG 0.339731 7_2:+85806821 Msa1085300:intron
CTCTTGGTTTCTTCTGAAGT+TGG 0.347825 7_2:-85807034 None:intergenic
GTTATCTTATTGGACCAATA+AGG 0.353998 7_2:+85805501 Msa1085300:five_prime_UTR
ATCTTACTTGTGTTCTTCTT+CGG 0.354438 7_2:-85806310 None:intergenic
CAACTTATGCATAGCCTAAA+CGG 0.360566 7_2:-85805334 None:intergenic
GCATTAACAGGAGCACAAAA+TGG 0.365638 7_2:+85805965 Msa1085300:CDS
TGTGGTAAATTCTCCACCTT+TGG 0.367052 7_2:+85805709 Msa1085300:five_prime_UTR
AGAAGAATTCACCCAATCTA+AGG 0.374549 7_2:-85806199 None:intergenic
ACATCAACAACACTCTTTCC+AGG 0.376605 7_2:-85806078 None:intergenic
TACTTGTTCATAATCATGTT+TGG 0.382661 7_2:-85807067 None:intergenic
TGCTCTTGCAGTTTATGATA+AGG 0.387222 7_2:+85806017 Msa1085300:CDS
ATTCCAACTATACCAACAAT+TGG 0.389716 7_2:+85805920 Msa1085300:CDS
ATTGTAGCAATAGCATTAAC+AGG 0.398247 7_2:+85805953 Msa1085300:CDS
GATGAATCAGTATAAGGAAT+TGG 0.401455 7_2:+85806101 Msa1085300:CDS
GTAGTACTATAACCAGGAAT+TGG 0.407318 7_2:-85806159 None:intergenic
GTTGTTGAGAAGATTGCATT+TGG 0.408588 7_2:-85807291 None:intergenic
CAATATATTTACATAGAACT+TGG 0.415544 7_2:-85807436 None:intergenic
GTTTGGTGAAGTTGATCTCT+TGG 0.418126 7_2:-85807050 None:intergenic
CTTGCACAAGTTGGTTTCTA+GGG 0.426235 7_2:+85805479 Msa1085300:five_prime_UTR
TCAAACAATTTGTTCTCTGC+AGG 0.426400 7_2:-85805991 None:intergenic
AGTGGAAAGAGAGGCTCTTC+TGG 0.427018 7_2:+85806246 Msa1085300:CDS
TGCATGATGTTGTTGATGAT+TGG 0.427511 7_2:+85807324 Msa1085300:exon
TTGTGTTCTTCTTCGGTCCA+TGG 0.429989 7_2:-85806303 None:intergenic
GATGTTTGTAATATAGAAGC+TGG 0.431912 7_2:+85806129 Msa1085300:CDS
AAAAGTATGGAAAAGGTGAT+TGG 0.434556 7_2:+85806849 Msa1085300:CDS
TCTGTAACTTCTGATATTGA+AGG 0.437794 7_2:+85807591 Msa1085300:three_prime_UTR
GAAAATCAATTAGAAATAAA+GGG 0.438068 7_2:-85805311 None:intergenic
GTGAATTCTTCTGGTTATGA+TGG 0.443309 7_2:+85806210 Msa1085300:CDS
TTGTAATATAGAAGCTGGTT+TGG 0.450084 7_2:+85806134 Msa1085300:CDS
TTTATAGATCTTGCACAAGT+TGG 0.451750 7_2:+85805470 Msa1085300:five_prime_UTR
TGATGTGATGAATCAGTATA+AGG 0.454237 7_2:+85806095 Msa1085300:CDS
AACTTATGCATAGCCTAAAC+GGG 0.468413 7_2:-85805333 None:intergenic
GAGCTATTATTAACTCCATA+AGG 0.476024 7_2:-85807178 None:intergenic
GAAAGACACTGAATTTATGA+AGG 0.477154 7_2:-85805228 None:intergenic
TTCTGGTAGATCTCCTGATC+AGG 0.477520 7_2:+85806263 Msa1085300:CDS
CAAGGAACTTTGTGATCACT+AGG 0.491493 7_2:+85806882 Msa1085300:CDS
TTGAATGCTGTCATAGTAGC+TGG 0.523867 7_2:-85807127 None:intergenic
TATGAACTTGATGATAGCAT+TGG 0.526347 7_2:+85807500 Msa1085300:three_prime_UTR
GATGGATTTAGAGGATTCAG+TGG 0.527739 7_2:+85806228 Msa1085300:CDS
ATTTATCTTTCATATTGTTG+TGG 0.535933 7_2:+85805691 Msa1085300:five_prime_UTR
GCTACCTTATGCCACCGATC+CGG 0.536074 7_2:-85806045 None:intergenic
CCTGATCAGGAAAGGAAGAA+AGG 0.540469 7_2:+85806276 Msa1085300:CDS
AAGGTAGCTGCAATGATCCC+TGG 0.550717 7_2:+85806060 Msa1085300:CDS
GCATGGCTAGCTACTTGTGT+TGG 0.551417 7_2:-85806908 None:intergenic
AGAGGATTCAGTGGAAAGAG+AGG 0.558995 7_2:+85806237 Msa1085300:CDS
TCTTATGGATTTAAAATGCA+AGG 0.560596 7_2:+85807199 Msa1085300:CDS
ATGAAAACTTGTTCATGTGA+TGG 0.562419 7_2:-85807151 None:intergenic
AACAACCTTAAACCTATGAA+AGG 0.563921 7_2:+85807545 Msa1085300:three_prime_UTR
TACGCCGGATCGGTGGCATA+AGG 0.566659 7_2:+85806041 Msa1085300:CDS
ATCAAGTTCATATACCAAGA+AGG 0.569120 7_2:-85807489 None:intergenic
CTCAGAAGTGGTGTTAGCAG+TGG 0.576504 7_2:-85807092 None:intergenic
TGATGAAATATTTCTGAGCA+TGG 0.587728 7_2:-85806925 None:intergenic
ATGATAAGGATACGCCGGAT+CGG 0.588112 7_2:+85806031 Msa1085300:CDS
CTGAAAATGCATCTCAGAAG+TGG 0.589832 7_2:-85807104 None:intergenic
AAATAAGAAGACTCATGAAG+AGG 0.592849 7_2:-85807241 None:intergenic
AAAGACACTGAATTTATGAA+GGG 0.594445 7_2:-85805227 None:intergenic
CATCAACAACACTCTTTCCA+GGG 0.594776 7_2:-85806077 None:intergenic
TATATGATATTTCAAAACAG+AGG 0.595770 7_2:-85805752 None:intergenic
AACTTGATGATAGCATTGGA+AGG 0.596746 7_2:+85807504 Msa1085300:three_prime_UTR
GTGATTGGAGAAACATATCA+AGG 0.596845 7_2:+85806864 Msa1085300:CDS
GTAGATCTCCTGATCAGGAA+AGG 0.600023 7_2:+85806268 Msa1085300:CDS
TTCATCAGACAACTTTCAGG+AGG 0.604647 7_2:+85806941 Msa1085300:CDS
AAAGGAAGAAAGGTGTGCCA+TGG 0.605391 7_2:+85806286 Msa1085300:CDS
ATAAGGATACGCCGGATCGG+TGG 0.605758 7_2:+85806034 Msa1085300:CDS
AGATAAATGAAGAGAACCAA+AGG 0.617158 7_2:-85805725 None:intergenic
TGGACCTCAGACACAAAACA+TGG 0.622490 7_2:+85807264 Msa1085300:CDS
TATGAAAGGTGAAAGCTGCA+AGG 0.634603 7_2:+85807559 Msa1085300:three_prime_UTR
TAAATGAAGAGAACCAAAGG+TGG 0.648472 7_2:-85805722 None:intergenic
AGTTTATGATAAGGATACGC+CGG 0.649185 7_2:+85806026 Msa1085300:CDS
GCAGCAGTAGTACTATAACC+AGG 0.674867 7_2:-85806165 None:intergenic
TTTGAACAAATGGTGCATGA+GGG 0.682304 7_2:-85805897 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTAGTATATAAGA+AGG + chr7_2:85805430-85805449 Msa1085300:five_prime_UTR 10.0%
!!! TATTTATTTAAGTATTTTTG+AGG + chr7_2:85806734-85806753 Msa1085300:intron 10.0%
!!! ATTTATTTAAGTATTTTTGA+GGG + chr7_2:85806735-85806754 Msa1085300:intron 10.0%
!! TATTGAGTTATTTATTATTA+TGG + chr7_2:85807350-85807369 Msa1085300:three_prime_UTR 10.0%
!! GAAAATCAATTAGAAATAAA+GGG - chr7_2:85805314-85805333 None:intergenic 15.0%
!!! TTTAGTTAAATTTTTCAACT+TGG + chr7_2:85805827-85805846 Msa1085300:five_prime_UTR 15.0%
!!! ATATTTATTTAAGTTGTTGA+AGG + chr7_2:85806762-85806781 Msa1085300:intron 15.0%
!!! TATTTATTTAAGTTGTTGAA+GGG + chr7_2:85806763-85806782 Msa1085300:intron 15.0%
!! AATAAAGGGAAAAAACAAAA+GGG - chr7_2:85805300-85805319 None:intergenic 20.0%
!! AAATAAAGGGAAAAAACAAA+AGG - chr7_2:85805301-85805320 None:intergenic 20.0%
!! GGAAAATCAATTAGAAATAA+AGG - chr7_2:85805315-85805334 None:intergenic 20.0%
!! CTTGAATATCAATATCAATT+TGG + chr7_2:85805531-85805550 Msa1085300:five_prime_UTR 20.0%
!!! CAATAAGCATTTTTTTCAAA+AGG - chr7_2:85805665-85805684 None:intergenic 20.0%
!! ATTTATCTTTCATATTGTTG+TGG + chr7_2:85805691-85805710 Msa1085300:five_prime_UTR 20.0%
!! TATATGATATTTCAAAACAG+AGG - chr7_2:85805755-85805774 None:intergenic 20.0%
!! CATAAACTTTAAATTACATC+CGG - chr7_2:85806595-85806614 None:intergenic 20.0%
!! GATTATGAAAATAATTTGAC+AGG + chr7_2:85806807-85806826 Msa1085300:intron 20.0%
!! CAATATATTTACATAGAACT+TGG - chr7_2:85807439-85807458 None:intergenic 20.0%
! AAAGACACTGAATTTATGAA+GGG - chr7_2:85805230-85805249 None:intergenic 25.0%
! ATTCAAGACTATTACCTTAT+TGG - chr7_2:85805518-85805537 None:intergenic 25.0%
!! TAGTTGGAATTTTGAACAAA+TGG - chr7_2:85805910-85805929 None:intergenic 25.0%
!! TATGTGAAGATTTTACTGTT+TGG + chr7_2:85806393-85806412 Msa1085300:intron 25.0%
! AACTAATATTAGTGCATGTT+TGG + chr7_2:85806443-85806462 Msa1085300:intron 25.0%
!! TGACAAAAGCTACATTTTAA+AGG - chr7_2:85806505-85806524 None:intergenic 25.0%
! TAAAGTTTATGTATGAACCT+AGG + chr7_2:85806604-85806623 Msa1085300:intron 25.0%
! ATCTGTAGTTATTAAGAGTT+AGG + chr7_2:85806651-85806670 Msa1085300:intron 25.0%
! CTTAACTAATAACTACCAAT+AGG - chr7_2:85806682-85806701 None:intergenic 25.0%
!!! ATTTGACAGGTTATTTCTAT+TGG + chr7_2:85806820-85806839 Msa1085300:intron 25.0%
!!! TTTGACAGGTTATTTCTATT+GGG + chr7_2:85806821-85806840 Msa1085300:intron 25.0%
! TACTTGTTCATAATCATGTT+TGG - chr7_2:85807070-85807089 None:intergenic 25.0%
!! TCTTATGGATTTAAAATGCA+AGG + chr7_2:85807199-85807218 Msa1085300:CDS 25.0%
!! TAGAACAAGTATCTTTTGTT+TGG + chr7_2:85807374-85807393 Msa1085300:three_prime_UTR 25.0%
GAAAGACACTGAATTTATGA+AGG - chr7_2:85805231-85805250 None:intergenic 30.0%
!! TCTTTCTGCTATTTCCAAAT+TGG + chr7_2:85805245-85805264 Msa1085300:five_prime_UTR 30.0%
!! CTTTCTGCTATTTCCAAATT+GGG + chr7_2:85805246-85805265 Msa1085300:five_prime_UTR 30.0%
TTGAATGTGAAAACCCAATT+TGG - chr7_2:85805262-85805281 None:intergenic 30.0%
! GGAAAAAACAAAAGGGTATA+AGG - chr7_2:85805293-85805312 None:intergenic 30.0%
!! TCTAATTGATTTTCCCGTTT+AGG + chr7_2:85805320-85805339 Msa1085300:five_prime_UTR 30.0%
TTTATAGATCTTGCACAAGT+TGG + chr7_2:85805470-85805489 Msa1085300:five_prime_UTR 30.0%
GTTATCTTATTGGACCAATA+AGG + chr7_2:85805501-85805520 Msa1085300:five_prime_UTR 30.0%
AGATAAATGAAGAGAACCAA+AGG - chr7_2:85805728-85805747 None:intergenic 30.0%
!!! TTGGTTTTTTGTGATGAAGT+GGG + chr7_2:85805846-85805865 Msa1085300:exon 30.0%
ATTCCAACTATACCAACAAT+TGG + chr7_2:85805920-85805939 Msa1085300:CDS 30.0%
AAACCAATTGTTGGTATAGT+TGG - chr7_2:85805926-85805945 None:intergenic 30.0%
!!! CTATACCAACAATTGGTTTT+TGG + chr7_2:85805927-85805946 Msa1085300:CDS 30.0%
ATCTTCCAAAAACCAATTGT+TGG - chr7_2:85805935-85805954 None:intergenic 30.0%
ATTGTAGCAATAGCATTAAC+AGG + chr7_2:85805953-85805972 Msa1085300:CDS 30.0%
TGATGTGATGAATCAGTATA+AGG + chr7_2:85806095-85806114 Msa1085300:CDS 30.0%
GATGAATCAGTATAAGGAAT+TGG + chr7_2:85806101-85806120 Msa1085300:CDS 30.0%
GATGTTTGTAATATAGAAGC+TGG + chr7_2:85806129-85806148 Msa1085300:CDS 30.0%
TTGTAATATAGAAGCTGGTT+TGG + chr7_2:85806134-85806153 Msa1085300:CDS 30.0%
! TTCACCTTTTACCTTAGATT+GGG + chr7_2:85806188-85806207 Msa1085300:CDS 30.0%
ATCTTACTTGTGTTCTTCTT+CGG - chr7_2:85806313-85806332 None:intergenic 30.0%
! TTTTGTCAAAATCACGATGA+CGG + chr7_2:85806517-85806536 Msa1085300:intron 30.0%
AAGAGTTAGGTATTTCCTAT+TGG + chr7_2:85806664-85806683 Msa1085300:intron 30.0%
! AAAAGTATGGAAAAGGTGAT+TGG + chr7_2:85806849-85806868 Msa1085300:CDS 30.0%
! TGATGAAATATTTCTGAGCA+TGG - chr7_2:85806928-85806947 None:intergenic 30.0%
TATTTCATCAGACAACTTTC+AGG + chr7_2:85806938-85806957 Msa1085300:CDS 30.0%
! ATGAAAACTTGTTCATGTGA+TGG - chr7_2:85807154-85807173 None:intergenic 30.0%
GAGCTATTATTAACTCCATA+AGG - chr7_2:85807181-85807200 None:intergenic 30.0%
GGAGTTAATAATAGCTCTTA+TGG + chr7_2:85807184-85807203 Msa1085300:CDS 30.0%
AAATAAGAAGACTCATGAAG+AGG - chr7_2:85807244-85807263 None:intergenic 30.0%
!! CTTCATGAGTCTTCTTATTT+TGG + chr7_2:85807244-85807263 Msa1085300:CDS 30.0%
TTAGTTAGTTATTGCCTTCT+TGG + chr7_2:85807475-85807494 Msa1085300:three_prime_UTR 30.0%
ATCAAGTTCATATACCAAGA+AGG - chr7_2:85807492-85807511 None:intergenic 30.0%
! TATGAACTTGATGATAGCAT+TGG + chr7_2:85807500-85807519 Msa1085300:three_prime_UTR 30.0%
AACAACCTTAAACCTATGAA+AGG + chr7_2:85807545-85807564 Msa1085300:three_prime_UTR 30.0%
TTTCACCTTTCATAGGTTTA+AGG - chr7_2:85807553-85807572 None:intergenic 30.0%
TCTGTAACTTCTGATATTGA+AGG + chr7_2:85807591-85807610 Msa1085300:three_prime_UTR 30.0%
AACTTATGCATAGCCTAAAC+GGG - chr7_2:85805336-85805355 None:intergenic 35.0%
CAACTTATGCATAGCCTAAA+CGG - chr7_2:85805337-85805356 None:intergenic 35.0%
!! GGTTTCTAGGGTTATCTTAT+TGG + chr7_2:85805491-85805510 Msa1085300:five_prime_UTR 35.0%
TAAATGAAGAGAACCAAAGG+TGG - chr7_2:85805725-85805744 None:intergenic 35.0%
!!! CTTGGTTTTTTGTGATGAAG+TGG + chr7_2:85805845-85805864 Msa1085300:exon 35.0%
! TTTTGTGATGAAGTGGGAAA+TGG + chr7_2:85805852-85805871 Msa1085300:exon 35.0%
TTTGAACAAATGGTGCATGA+GGG - chr7_2:85805900-85805919 None:intergenic 35.0%
! TTTTGAACAAATGGTGCATG+AGG - chr7_2:85805901-85805920 None:intergenic 35.0%
! TCAAACAATTTGTTCTCTGC+AGG - chr7_2:85805994-85806013 None:intergenic 35.0%
TGCTCTTGCAGTTTATGATA+AGG + chr7_2:85806017-85806036 Msa1085300:CDS 35.0%
AGTTTATGATAAGGATACGC+CGG + chr7_2:85806026-85806045 Msa1085300:CDS 35.0%
GTAGTACTATAACCAGGAAT+TGG - chr7_2:85806162-85806181 None:intergenic 35.0%
! CTTCACCTTTTACCTTAGAT+TGG + chr7_2:85806187-85806206 Msa1085300:CDS 35.0%
! TTCACCCAATCTAAGGTAAA+AGG - chr7_2:85806195-85806214 None:intergenic 35.0%
AGAAGAATTCACCCAATCTA+AGG - chr7_2:85806202-85806221 None:intergenic 35.0%
TTAGATTGGGTGAATTCTTC+TGG + chr7_2:85806201-85806220 Msa1085300:CDS 35.0%
! GTGAATTCTTCTGGTTATGA+TGG + chr7_2:85806210-85806229 Msa1085300:CDS 35.0%
!! TCTGGTTATGATGGATTTAG+AGG + chr7_2:85806219-85806238 Msa1085300:CDS 35.0%
GTTTGGATTGACGGTTAATT+TGG - chr7_2:85806562-85806581 None:intergenic 35.0%
ACTTTAAATTACATCCGGTC+AGG - chr7_2:85806590-85806609 None:intergenic 35.0%
TTATGTATGAACCTAGGAGT+TGG + chr7_2:85806610-85806629 Msa1085300:intron 35.0%
CTATTGGGTCTGAAAAAGTA+TGG + chr7_2:85806836-85806855 Msa1085300:CDS 35.0%
! GGTCTGAAAAAGTATGGAAA+AGG + chr7_2:85806842-85806861 Msa1085300:CDS 35.0%
GTGATTGGAGAAACATATCA+AGG + chr7_2:85806864-85806883 Msa1085300:CDS 35.0%
! CAAGTTTTCATGTCTCCTTA+TGG + chr7_2:85807163-85807182 Msa1085300:CDS 35.0%
! AAAACCATGTTTTGTGTCTG+AGG - chr7_2:85807271-85807290 None:intergenic 35.0%
GTTGTTGAGAAGATTGCATT+TGG - chr7_2:85807294-85807313 None:intergenic 35.0%
!! TGCATGATGTTGTTGATGAT+TGG + chr7_2:85807324-85807343 Msa1085300:exon 35.0%
! AACTTGATGATAGCATTGGA+AGG + chr7_2:85807504-85807523 Msa1085300:three_prime_UTR 35.0%
!! TCTTGCACAAGTTGGTTTCT+AGG + chr7_2:85805478-85805497 Msa1085300:five_prime_UTR 40.0%
!! CTTGCACAAGTTGGTTTCTA+GGG + chr7_2:85805479-85805498 Msa1085300:five_prime_UTR 40.0%
TGTGGTAAATTCTCCACCTT+TGG + chr7_2:85805709-85805728 Msa1085300:five_prime_UTR 40.0%
! GCATTAACAGGAGCACAAAA+TGG + chr7_2:85805965-85805984 Msa1085300:CDS 40.0%
CATCAACAACACTCTTTCCA+GGG - chr7_2:85806080-85806099 None:intergenic 40.0%
ACATCAACAACACTCTTTCC+AGG - chr7_2:85806081-85806100 None:intergenic 40.0%
! GATGGATTTAGAGGATTCAG+TGG + chr7_2:85806228-85806247 Msa1085300:CDS 40.0%
CAGGTGAATGTTTGGATTGA+CGG - chr7_2:85806571-85806590 None:intergenic 40.0%
AATCCAAACATTCACCTGAC+CGG + chr7_2:85806573-85806592 Msa1085300:intron 40.0%
ATTTCACTTCACCAACTCCT+AGG - chr7_2:85806624-85806643 None:intergenic 40.0%
CAAGGAACTTTGTGATCACT+AGG + chr7_2:85806882-85806901 Msa1085300:CDS 40.0%
TTCATCAGACAACTTTCAGG+AGG + chr7_2:85806941-85806960 Msa1085300:CDS 40.0%
!! CTCTTGGTTTCTTCTGAAGT+TGG - chr7_2:85807037-85807056 None:intergenic 40.0%
! GTTTGGTGAAGTTGATCTCT+TGG - chr7_2:85807053-85807072 None:intergenic 40.0%
CTGAAAATGCATCTCAGAAG+TGG - chr7_2:85807107-85807126 None:intergenic 40.0%
TTGAATGCTGTCATAGTAGC+TGG - chr7_2:85807130-85807149 None:intergenic 40.0%
TTGCAGCTTTCACCTTTCAT+AGG - chr7_2:85807560-85807579 None:intergenic 40.0%
TATGAAAGGTGAAAGCTGCA+AGG + chr7_2:85807559-85807578 Msa1085300:three_prime_UTR 40.0%
ATGATAAGGATACGCCGGAT+CGG + chr7_2:85806031-85806050 Msa1085300:CDS 45.0%
GCAGCAGTAGTACTATAACC+AGG - chr7_2:85806168-85806187 None:intergenic 45.0%
AGAGGATTCAGTGGAAAGAG+AGG + chr7_2:85806237-85806256 Msa1085300:CDS 45.0%
TTCTGGTAGATCTCCTGATC+AGG + chr7_2:85806263-85806282 Msa1085300:CDS 45.0%
GTAGATCTCCTGATCAGGAA+AGG + chr7_2:85806268-85806287 Msa1085300:CDS 45.0%
CCTTTCTTCCTTTCCTGATC+AGG - chr7_2:85806279-85806298 None:intergenic 45.0%
CCTGATCAGGAAAGGAAGAA+AGG + chr7_2:85806276-85806295 Msa1085300:CDS 45.0%
! AAAGGAAGAAAGGTGTGCCA+TGG + chr7_2:85806286-85806305 Msa1085300:CDS 45.0%
TTGTGTTCTTCTTCGGTCCA+TGG - chr7_2:85806306-85806325 None:intergenic 45.0%
TGGACCTCAGACACAAAACA+TGG + chr7_2:85807264-85807283 Msa1085300:CDS 45.0%
GGTGCATGAGGGTGAGAATT+TGG - chr7_2:85805889-85805908 None:intergenic 50.0%
AAGGTAGCTGCAATGATCCC+TGG + chr7_2:85806060-85806079 Msa1085300:CDS 50.0%
!! GCTGGTTTGGTTCCAATTCC+TGG + chr7_2:85806147-85806166 Msa1085300:CDS 50.0%
AGTGGAAAGAGAGGCTCTTC+TGG + chr7_2:85806246-85806265 Msa1085300:CDS 50.0%
CATCCGGTCAGGTGAATGTT+TGG - chr7_2:85806579-85806598 None:intergenic 50.0%
! GCATGGCTAGCTACTTGTGT+TGG - chr7_2:85806911-85806930 None:intergenic 50.0%
! CTCAGAAGTGGTGTTAGCAG+TGG - chr7_2:85807095-85807114 None:intergenic 50.0%
ATAAGGATACGCCGGATCGG+TGG + chr7_2:85806034-85806053 Msa1085300:CDS 55.0%
GCTACCTTATGCCACCGATC+CGG - chr7_2:85806048-85806067 None:intergenic 55.0%
TACGCCGGATCGGTGGCATA+AGG + chr7_2:85806041-85806060 Msa1085300:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 85805185 85807669 85805185 ID=Msa1085300;Name=Msa1085300
chr7_2 mRNA 85805185 85807669 85805185 ID=Msa1085300-mRNA-1;Parent=Msa1085300;Name=Msa1085300-mRNA-1;_AED=0.00;_eAED=0.00;_QI=674|1|1|1|1|1|2|339|322
chr7_2 exon 85805185 85806325 85805185 ID=Msa1085300-mRNA-1:exon:23215;Parent=Msa1085300-mRNA-1
chr7_2 exon 85806829 85807669 85806829 ID=Msa1085300-mRNA-1:exon:23216;Parent=Msa1085300-mRNA-1
chr7_2 five_prime_UTR 85805185 85805858 85805185 ID=Msa1085300-mRNA-1:five_prime_utr;Parent=Msa1085300-mRNA-1
chr7_2 CDS 85805859 85806325 85805859 ID=Msa1085300-mRNA-1:cds;Parent=Msa1085300-mRNA-1
chr7_2 CDS 85806829 85807330 85806829 ID=Msa1085300-mRNA-1:cds;Parent=Msa1085300-mRNA-1
chr7_2 three_prime_UTR 85807331 85807669 85807331 ID=Msa1085300-mRNA-1:three_prime_utr;Parent=Msa1085300-mRNA-1
Gene Sequence

>Msa1085300

ATGAAGTGGGAAATGGAAATTCTTTCACCAAATTCTCACCCTCATGCACCATTTGTTCAAAATTCCAACTATACCAACAATTGGTTTTTGGAAGATTGTAGCAATAGCATTAACAGGAGCACAAAATGGACTCCTGCAGAGAACAAATTGTTTGAAAATGCTCTTGCAGTTTATGATAAGGATACGCCGGATCGGTGGCATAAGGTAGCTGCAATGATCCCTGGAAAGAGTGTTGTTGATGTGATGAATCAGTATAAGGAATTGGAAGTTGATGTTTGTAATATAGAAGCTGGTTTGGTTCCAATTCCTGGTTATAGTACTACTGCTGCTTCACCTTTTACCTTAGATTGGGTGAATTCTTCTGGTTATGATGGATTTAGAGGATTCAGTGGAAAGAGAGGCTCTTCTGGTAGATCTCCTGATCAGGAAAGGAAGAAAGGTGTGCCATGGACCGAAGAAGAACACAAGTTATTTCTATTGGGTCTGAAAAAGTATGGAAAAGGTGATTGGAGAAACATATCAAGGAACTTTGTGATCACTAGGACACCAACACAAGTAGCTAGCCATGCTCAGAAATATTTCATCAGACAACTTTCAGGAGGCAAAGACAAAAGAAGAGCAAGCATTCATGACATAACAACAGTTAATCTCACAGAAGTTTCTAGAACTTCTCCAACTTCAGAAGAAACCAAGAGATCAACTTCACCAAACATGATTATGAACAAGTATTCCACTGCTAACACCACTTCTGAGATGCATTTTCAGCCAGCTACTATGACAGCATTCAATCCATCACATGAACAAGTTTTCATGTCTCCTTATGGAGTTAATAATAGCTCTTATGGATTTAAAATGCAAGGTCAAAATATGCATAGAAATCCTCTTCATGAGTCTTCTTATTTTGGACCTCAGACACAAAACATGGTTTTCCAAATGCAATCTTCTCAACAACACTATTCACATGCATGA

Protein sequence

>Msa1085300

MKWEMEILSPNSHPHAPFVQNSNYTNNWFLEDCSNSINRSTKWTPAENKLFENALAVYDKDTPDRWHKVAAMIPGKSVVDVMNQYKELEVDVCNIEAGLVPIPGYSTTAASPFTLDWVNSSGYDGFRGFSGKRGSSGRSPDQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTEVSRTSPTSEETKRSTSPNMIMNKYSTANTTSEMHFQPATMTAFNPSHEQVFMSPYGVNNSSYGFKMQGQNMHRNPLHESSYFGPQTQNMVFQMQSSQQHYSHA*