AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0126380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0126380 MtrunA17_Chr1g0189381 98.747 479 5 1 1 479 1 478 0.0 969
Msa0126380 MtrunA17_Chr7g0249451 67.091 471 149 3 9 475 7 475 0.0 657
Msa0126380 MtrunA17_Chr7g0221681 55.149 437 187 3 26 455 24 458 3.50e-176 503
Msa0126380 MtrunA17_Chr7g0265331 39.009 464 257 8 31 475 37 493 5.75e-107 327
Msa0126380 MtrunA17_Chr4g0027681 38.913 460 256 9 36 477 39 491 9.98e-105 321
Msa0126380 MtrunA17_Chr2g0320621 39.457 479 269 8 2 465 1 473 1.62e-102 315
Msa0126380 MtrunA17_Chr1g0179751 39.202 426 234 10 32 441 64 480 5.28e-99 307
Msa0126380 MtrunA17_Chr5g0401601 30.290 449 246 20 31 455 61 466 1.54e-39 151
Msa0126380 MtrunA17_Chr4g0053721 30.729 384 215 15 68 431 79 431 1.42e-34 137
Msa0126380 MtrunA17_Chr3g0130741 27.338 417 248 17 45 440 62 444 1.22e-32 129
Msa0126380 MtrunA17_Chr6g0475351 61.446 83 32 0 112 194 4 86 8.09e-31 114
Msa0126380 MtrunA17_Chr4g0010951 27.972 429 234 17 50 430 44 445 2.09e-30 122
Msa0126380 MtrunA17_Chr5g0435871 28.125 384 229 18 63 431 84 435 7.23e-30 121
Msa0126380 MtrunA17_Chr8g0352661 27.676 383 228 15 68 431 85 437 7.78e-30 121
Msa0126380 MtrunA17_Chr1g0159791 28.392 398 242 18 49 430 39 409 1.14e-29 120
Msa0126380 MtrunA17_Chr3g0130931 29.134 381 219 17 68 431 103 449 3.75e-29 119
Msa0126380 MtrunA17_Chr8g0371351 26.150 413 257 16 39 430 64 449 1.35e-28 118
Msa0126380 MtrunA17_Chr4g0001991 29.049 389 226 16 60 431 163 518 2.34e-28 117
Msa0126380 MtrunA17_Chr5g0435971 27.604 384 231 18 63 431 81 432 4.35e-28 115
Msa0126380 MtrunA17_Chr8g0386441 28.049 410 238 20 39 431 61 430 1.37e-27 114
Msa0126380 MtrunA17_Chr3g0099891 29.211 380 213 15 67 430 115 454 2.79e-27 114
Msa0126380 MtrunA17_Chr5g0395871 28.278 389 219 17 65 432 77 426 4.55e-27 113
Msa0126380 MtrunA17_Chr3g0124421 26.683 416 261 17 39 430 55 450 6.82e-27 113
Msa0126380 MtrunA17_Chr2g0307991 29.178 377 221 18 70 431 60 405 1.36e-26 111
Msa0126380 MtrunA17_Chr3g0087851 28.235 425 249 19 28 431 48 437 1.42e-26 111
Msa0126380 MtrunA17_Chr8g0384731 26.847 406 247 19 52 438 58 432 1.51e-26 111
Msa0126380 MtrunA17_Chr6g0484901 26.359 368 231 13 70 430 157 491 1.67e-26 112
Msa0126380 MtrunA17_Chr5g0406001 27.749 382 224 17 69 430 112 461 1.88e-26 112
Msa0126380 MtrunA17_Chr8g0352671 28.084 381 226 17 68 431 88 437 2.61e-26 110
Msa0126380 MtrunA17_Chr2g0310801 29.144 374 227 15 68 431 89 434 2.78e-26 110
Msa0126380 MtrunA17_Chr2g0291201 28.894 398 219 17 62 430 89 451 4.95e-26 110
Msa0126380 MtrunA17_Chr3g0095891 29.676 401 220 20 61 430 89 458 5.70e-26 110
Msa0126380 MtrunA17_Chr5g0395931 29.365 378 225 16 68 431 87 436 7.55e-26 109
Msa0126380 MtrunA17_Chr8g0371371 27.225 382 232 15 69 434 112 463 1.44e-25 109
Msa0126380 MtrunA17_Chr5g0442921 27.778 396 237 16 61 431 183 554 1.91e-25 109
Msa0126380 MtrunA17_Chr5g0395911 27.778 378 230 16 68 431 66 414 8.71e-25 106
Msa0126380 MtrunA17_Chr5g0419291 26.933 375 231 15 68 430 85 428 9.60e-25 106
Msa0126380 MtrunA17_Chr5g0425141 25.464 377 246 14 69 434 101 453 1.98e-24 106
Msa0126380 MtrunA17_Chr7g0275731 25.587 383 241 13 61 430 133 484 2.54e-24 105
Msa0126380 MtrunA17_Chr2g0308001 28.721 383 222 19 70 432 59 410 2.71e-24 105
Msa0126380 MtrunA17_Chr6g0484731 28.049 410 249 18 52 440 176 560 3.03e-24 105
Msa0126380 MtrunA17_Chr2g0333991 25.935 401 252 16 42 425 58 430 3.91e-24 104
Msa0126380 MtrunA17_Chr1g0210201 25.526 380 238 14 61 430 123 467 2.86e-23 102
Msa0126380 MtrunA17_Chr1g0212321 26.702 382 235 14 61 430 138 486 1.93e-22 100
Msa0126380 MtrunA17_Chr8g0390761 24.427 393 246 13 41 420 91 445 2.45e-22 99.4
Msa0126380 MtrunA17_Chr2g0310821 27.778 378 222 18 68 433 107 445 1.61e-21 97.1
Msa0126380 MtrunA17_Chr5g0415951 27.632 380 228 14 70 433 89 437 1.65e-21 96.7
Msa0126380 MtrunA17_Chr2g0310831 25.962 416 258 16 31 431 61 441 5.03e-21 95.5
Msa0126380 MtrunA17_Chr2g0311451 24.818 411 256 16 42 431 58 436 5.23e-21 95.1
Msa0126380 MtrunA17_Chr1g0165201 25.521 384 238 15 61 430 120 469 5.27e-21 95.5
Msa0126380 MtrunA17_Chr7g0267171 26.303 403 237 18 68 433 89 468 1.10e-20 94.7
Msa0126380 MtrunA17_Chr2g0312941 25.816 337 205 13 63 372 81 399 1.11e-20 94.4
Msa0126380 MtrunA17_Chr4g0019931 35.246 122 78 1 74 194 1 122 1.97e-20 87.0
Msa0126380 MtrunA17_Chr3g0099901 27.778 378 227 15 67 430 140 485 3.46e-19 90.1
Msa0126380 MtrunA17_Chr6g0486981 23.885 381 239 14 70 431 89 437 4.81e-19 89.4
Msa0126380 MtrunA17_Chr3g0110191 25.515 388 228 17 74 435 91 443 6.19e-19 89.0
Msa0126380 MtrunA17_Chr1g0164401 26.203 374 227 19 70 431 93 429 1.12e-18 88.2
Msa0126380 MtrunA17_Chr6g0457401 25.236 424 263 19 28 431 48 437 1.69e-18 87.8
Msa0126380 MtrunA17_Chr2g0309561 23.023 430 271 16 46 430 94 508 2.34e-18 87.8
Msa0126380 MtrunA17_Chr4g0023351 30.677 251 137 12 70 304 59 288 3.12e-18 85.1
Msa0126380 MtrunA17_Chr6g0487471 24.219 384 238 14 68 431 85 435 5.01e-17 83.2
Msa0126380 MtrunA17_Chr4g0061641 26.720 378 225 17 70 431 56 397 5.82e-17 82.8
Msa0126380 MtrunA17_Chr5g0395891 29.653 317 186 16 129 431 20 313 9.93e-17 80.9
Msa0126380 MtrunA17_Chr4g0056211 26.056 426 239 20 63 432 67 472 3.07e-16 80.9
Msa0126380 MtrunA17_Chr3g0112051 27.215 316 180 14 74 364 78 368 1.16e-15 79.0
Msa0126380 MtrunA17_Chr5g0434411 24.611 386 238 18 74 435 86 442 1.45e-14 75.5
Msa0126380 MtrunA17_Chr2g0307461 24.745 392 232 14 70 430 71 430 1.79e-14 75.5
Msa0126380 MtrunA17_Chr7g0239001 27.068 266 155 11 73 321 63 306 1.86e-14 75.5
Msa0126380 MtrunA17_Chr3g0078321 22.667 375 242 15 77 431 67 413 3.71e-14 74.3
Msa0126380 MtrunA17_Chr2g0287841 23.750 400 232 17 63 417 57 428 5.08e-14 73.9
Msa0126380 MtrunA17_Chr2g0287861 23.980 392 229 16 67 417 41 404 8.90e-14 73.2
Msa0126380 MtrunA17_Chr5g0430861 47.945 73 36 2 198 269 34 105 3.08e-13 65.9
Msa0126380 MtrunA17_Chr8g0352691 27.915 283 169 13 160 431 2 260 7.99e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0126380 AT1G05840.1 55.188 453 199 2 5 455 13 463 0.0 526
Msa0126380 AT5G36260.1 51.852 459 210 7 24 477 28 480 1.36e-169 486
Msa0126380 AT3G02740.1 50.206 486 220 8 2 471 1 480 9.76e-164 472
Msa0126380 AT1G65240.1 50.549 455 211 8 24 473 24 469 8.15e-159 459
Msa0126380 AT3G02740.2 53.448 406 183 5 69 474 9 408 1.81e-150 435
Msa0126380 AT5G22850.1 39.913 461 254 8 31 474 38 492 2.68e-106 325
Msa0126380 AT2G36670.2 39.588 437 238 6 20 437 35 464 4.87e-102 315
Msa0126380 AT2G36670.1 39.140 442 238 7 20 437 35 469 7.96e-100 309
Msa0126380 AT2G36670.4 42.091 373 205 4 69 437 33 398 1.17e-97 301
Msa0126380 AT2G36670.3 42.091 373 205 4 69 437 33 398 1.17e-97 301
Msa0126380 AT1G08210.1 37.778 450 258 9 7 442 11 452 3.60e-94 294
Msa0126380 AT1G08210.4 37.778 450 258 9 7 442 45 486 8.69e-94 294
Msa0126380 AT1G08210.3 37.778 450 258 9 7 442 59 500 1.11e-93 294
Msa0126380 AT1G08210.2 36.017 472 263 10 7 442 11 479 2.30e-89 282
Msa0126380 AT3G42550.1 25.355 493 280 15 7 478 5 430 3.10e-40 150
Msa0126380 AT5G43100.2 28.833 437 245 19 68 473 74 475 7.35e-38 144
Msa0126380 AT4G33490.2 27.766 461 266 22 2 439 4 420 2.03e-36 139
Msa0126380 AT5G43100.1 30.000 380 215 16 68 431 74 418 2.10e-36 142
Msa0126380 AT2G17760.1 29.197 411 245 16 39 430 66 449 3.03e-35 137
Msa0126380 AT3G50050.1 30.504 377 219 15 68 431 91 437 1.34e-33 134
Msa0126380 AT3G12700.1 27.133 457 271 18 7 431 35 461 8.93e-32 127
Msa0126380 AT3G25700.1 29.293 396 235 16 61 431 75 450 5.38e-31 125
Msa0126380 AT1G44130.1 26.700 397 245 16 52 431 33 400 1.16e-29 120
Msa0126380 AT4G33490.1 29.032 341 201 15 2 336 1 306 9.20e-29 117
Msa0126380 AT1G25510.1 25.858 379 238 12 61 430 139 483 1.20e-28 118
Msa0126380 AT5G10080.1 26.087 391 249 15 69 442 99 466 7.33e-27 114
Msa0126380 AT2G23945.1 27.208 419 252 17 39 430 56 448 2.01e-26 112
Msa0126380 AT1G49050.1 27.273 407 243 21 52 430 187 568 3.71e-26 112
Msa0126380 AT3G51350.1 26.506 415 257 18 39 430 63 452 7.56e-26 110
Msa0126380 AT3G18490.1 26.190 378 241 13 61 430 153 500 1.50e-25 109
Msa0126380 AT3G54400.1 25.737 373 231 15 70 431 88 425 1.50e-25 108
Msa0126380 AT3G59080.1 25.217 460 285 18 2 431 103 533 2.08e-25 109
Msa0126380 AT1G01300.1 27.670 412 223 18 46 431 123 485 2.43e-25 108
Msa0126380 AT4G35880.1 25.333 375 238 17 69 430 106 451 4.91e-25 108
Msa0126380 AT3G51340.2 26.087 414 254 16 39 430 64 447 8.51e-25 107
Msa0126380 AT1G49050.2 26.667 390 235 20 69 430 29 395 1.76e-24 105
Msa0126380 AT5G10770.1 25.995 377 236 15 67 431 129 474 1.36e-23 103
Msa0126380 AT2G03200.1 26.410 390 226 16 67 430 104 458 1.55e-23 103
Msa0126380 AT3G51330.3 27.778 414 254 17 39 430 63 453 8.93e-23 101
Msa0126380 AT3G51330.1 27.778 414 254 17 39 430 63 453 1.02e-22 101
Msa0126380 AT1G77480.1 27.438 441 267 20 45 467 44 449 1.59e-22 100
Msa0126380 AT1G77480.2 27.901 405 246 19 44 430 43 419 2.66e-22 99.4
Msa0126380 AT3G20015.1 26.632 383 234 14 61 430 122 470 6.96e-22 98.6
Msa0126380 AT4G30040.1 26.963 382 228 15 63 425 78 427 1.13e-21 97.4
Msa0126380 AT3G61820.1 26.166 386 241 13 61 430 126 483 1.20e-21 98.2
Msa0126380 AT1G31450.1 27.097 465 272 21 7 434 11 445 1.37e-21 97.4
Msa0126380 AT1G49050.3 28.475 295 180 14 52 335 187 461 1.38e-21 97.8
Msa0126380 AT3G51360.1 25.000 424 260 15 35 433 48 438 2.08e-21 97.4
Msa0126380 AT3G51340.1 25.060 419 264 14 39 430 64 459 2.12e-21 97.4
Msa0126380 AT3G51360.9 25.000 424 260 15 35 433 58 448 3.02e-21 97.1
Msa0126380 AT1G64830.1 28.756 386 213 16 68 431 84 429 3.45e-21 96.3
Msa0126380 AT4G35880.2 27.070 314 194 16 69 369 106 397 1.15e-20 94.7
Msa0126380 AT2G28040.1 24.865 370 229 13 70 432 65 392 2.34e-20 93.2
Msa0126380 AT2G42980.1 26.545 437 254 19 28 431 123 525 2.38e-20 94.4
Msa0126380 AT2G28040.2 24.865 370 229 13 70 432 56 383 3.62e-20 92.8
Msa0126380 AT2G28010.1 24.194 372 232 11 69 432 64 393 4.05e-20 92.8
Msa0126380 AT5G45120.1 26.767 467 253 24 25 430 40 478 4.79e-20 93.2
Msa0126380 AT3G51360.7 24.479 384 238 14 69 433 4 354 9.44e-20 91.7
Msa0126380 AT5G33340.1 27.368 380 238 14 63 431 83 435 1.06e-19 91.7
Msa0126380 AT2G35615.1 26.024 415 253 17 46 434 61 447 1.54e-19 91.3
Msa0126380 AT3G52500.1 27.586 406 227 17 68 431 88 468 1.59e-19 91.7
Msa0126380 AT3G51340.4 27.622 286 182 9 39 307 64 341 2.71e-19 90.1
Msa0126380 AT3G51340.3 27.622 286 182 9 39 307 64 341 2.81e-19 90.1
Msa0126380 AT4G30030.1 25.067 371 239 12 70 430 78 419 8.15e-19 89.0
Msa0126380 AT1G79720.1 28.010 382 220 18 70 430 135 482 1.71e-18 88.6
Msa0126380 AT3G51330.2 27.926 376 231 15 39 392 63 420 2.24e-18 87.8
Msa0126380 AT5G37540.1 24.031 387 232 15 74 430 84 438 1.88e-17 85.1
Msa0126380 AT5G10760.1 23.698 384 239 15 63 430 119 464 2.05e-17 85.1
Msa0126380 AT2G28030.1 22.312 372 239 13 69 432 60 389 2.75e-17 84.0
Msa0126380 AT1G09750.1 25.995 377 235 17 68 430 102 448 5.77e-17 83.6
Msa0126380 AT5G07030.1 25.789 380 225 18 70 431 115 455 6.85e-17 83.2
Msa0126380 AT2G28225.1 21.958 378 237 13 69 432 66 399 1.74e-16 81.6
Msa0126380 AT3G51360.5 25.627 359 216 13 35 370 58 388 5.42e-16 80.5
Msa0126380 AT3G51360.6 25.627 359 216 13 35 370 58 388 5.66e-16 80.5
Msa0126380 AT1G66180.1 22.922 397 222 16 74 431 76 427 5.85e-16 80.5
Msa0126380 AT3G51360.10 25.429 350 210 13 44 370 57 378 9.27e-16 79.7
Msa0126380 AT3G51360.4 25.627 359 216 13 35 370 48 378 1.05e-15 79.3
Msa0126380 AT2G28220.1 21.564 422 256 16 29 432 35 399 1.08e-15 79.3
Msa0126380 AT2G39710.1 25.959 339 193 18 74 382 69 379 1.27e-15 79.3
Msa0126380 AT3G51360.2 27.018 285 182 9 35 305 58 330 1.03e-14 75.9
Msa0126380 AT3G59080.2 22.757 457 264 16 2 431 103 497 1.13e-14 76.6
Msa0126380 AT5G02190.1 23.077 390 239 16 79 433 82 445 9.66e-14 73.6

Find 137 sgRNAs with CRISPR-Local

Find 773 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAGATAATTTGGTGTTTC+AGG 0.166469 1_3:+55461388 Msa0126380:CDS
AATGGAGTTGTTCTGACTTT+TGG 0.238222 1_3:-55464151 None:intergenic
GATTAATGAACATACATATT+TGG 0.242714 1_3:-55464178 None:intergenic
GAAGCCCTTGATGGAATAAT+TGG 0.245572 1_3:+55464001 Msa0126380:CDS
TGGACATAGTAGTCCTTCTT+TGG 0.254367 1_3:-55463128 None:intergenic
CCCTCGGATATATTTGATTC+TGG 0.259620 1_3:+55466115 Msa0126380:CDS
TGTCCTTTCCATCCTTAGTT+TGG 0.271260 1_3:-55467765 None:intergenic
GATATATTTGATTCTGGAAA+TGG 0.285563 1_3:+55466121 Msa0126380:CDS
TCATCCGTTGATTTCAATCT+TGG 0.285586 1_3:+55461479 Msa0126380:CDS
TGACTATCTGTTCCAATATA+AGG 0.288332 1_3:+55467291 Msa0126380:CDS
CTTGATGGAATAATTGGTTT+TGG 0.295754 1_3:+55464007 Msa0126380:CDS
CTTGTACGATCTTGAGAATA+TGG 0.302586 1_3:+55470972 Msa0126380:CDS
TCTCCATAAGTTATGCTATA+GGG 0.307360 1_3:-55463479 None:intergenic
CTTCACGATAAAGCTGGTTT+TGG 0.308160 1_3:-55460983 None:intergenic
GTCCTTTCCATCCTTAGTTT+GGG 0.310111 1_3:-55467764 None:intergenic
ACATATGATGGTCCGATTCC+TGG 0.332528 1_3:+55463434 Msa0126380:CDS
ATTATTGATTATACTAGCTT+TGG 0.334337 1_3:+55461346 Msa0126380:CDS
CAATATTCTACCAATTAAAA+AGG 0.337258 1_3:-55471508 None:intergenic
ATGCGAGCTAATTTCAATTC+AGG 0.348914 1_3:-55466307 None:intergenic
GGAAAGGACATGACACTTCT+TGG 0.353144 1_3:+55467778 Msa0126380:CDS
AAGTTCATACCACCTTATAT+TGG 0.354647 1_3:-55467303 None:intergenic
CAAATACCTTTGGAATTAGT+TGG 0.360512 1_3:-55466204 None:intergenic
TGTTGCGAATGGAGATAATT+TGG 0.363552 1_3:+55461379 Msa0126380:CDS
AATGGTCTTCCTACTAGAAC+TGG 0.364096 1_3:+55461506 Msa0126380:CDS
AATATTTGCCATAGGGGAAT+TGG 0.388793 1_3:+55464123 Msa0126380:CDS
TATTCCATCAAGGGCTTCTT+CGG 0.390964 1_3:-55463996 None:intergenic
AATGCATACATACACCGATT+TGG 0.391207 1_3:-55463217 None:intergenic
GAAGGTTTATGATTATATAA+TGG 0.403319 1_3:+55471756 Msa0126380:three_prime_UTR
TAGGCTGGTGTCCGATGTAT+TGG 0.403880 1_3:+55467724 Msa0126380:intron
TGCCCCTATAGCATAACTTA+TGG 0.404144 1_3:+55463476 Msa0126380:CDS
AGGTTGTATTTCACTAAACT+TGG 0.408327 1_3:+55463095 Msa0126380:intron
TCAAAATGTAGTTTGACAAC+TGG 0.411155 1_3:-55467238 None:intergenic
GATCTTGAGAATATGGCTAT+TGG 0.412629 1_3:+55470979 Msa0126380:CDS
TATGATGTGAAATGTGAGTA+TGG 0.417643 1_3:-55461215 None:intergenic
TATTTCACTAAACTTGGGCT+TGG 0.419254 1_3:+55463101 Msa0126380:CDS
TTGAAGAATATTGAAGTTGA+TGG 0.419885 1_3:+55466076 Msa0126380:CDS
TCTGAAGTATGAGATCCCTT+TGG 0.425665 1_3:-55463377 None:intergenic
ATAAGAATCTATACGAGAAC+TGG 0.434723 1_3:-55471672 None:intergenic
GATTTCAATCTTGGTGGTAA+TGG 0.434766 1_3:+55461488 Msa0126380:CDS
TCTTCCGAAGAAGCCCTTGA+TGG 0.436173 1_3:+55463992 Msa0126380:CDS
CTGAAGTATGAGATCCCTTT+GGG 0.444221 1_3:-55463376 None:intergenic
TGCATCCTTCACTTTAATGC+TGG 0.446229 1_3:-55471433 None:intergenic
ATCTCCATAAGTTATGCTAT+AGG 0.446865 1_3:-55463480 None:intergenic
ACTAAAAGAAAACACAAGAT+AGG 0.448084 1_3:+55460894 Msa0126380:five_prime_UTR
TGTTATATATTAAATGATGA+AGG 0.449165 1_3:+55471738 Msa0126380:three_prime_UTR
ATAAGTTATGCTATAGGGGC+AGG 0.450756 1_3:-55463474 None:intergenic
CAACTACTGGATACTATGTC+AGG 0.454687 1_3:+55463510 Msa0126380:CDS
TAGATTCTTATAGATGCAAA+AGG 0.456456 1_3:+55471684 Msa0126380:three_prime_UTR
ATATATTTGATTCTGGAAAT+GGG 0.463580 1_3:+55466122 Msa0126380:CDS
TCCGTTGATTTCAATCTTGG+TGG 0.470108 1_3:+55461482 Msa0126380:CDS
TTGTAACCTTGCAGTGTTGA+TGG 0.473520 1_3:+55467208 Msa0126380:intron
ACTGCACACCTTATCATTCA+AGG 0.476752 1_3:-55471626 None:intergenic
TACTATGTCCAAGTTGATAC+AGG 0.477388 1_3:+55463140 Msa0126380:CDS
TCATAATTCCTTGAATGATA+AGG 0.478561 1_3:+55471618 Msa0126380:three_prime_UTR
TCCGCCTTACAACCAGGAAT+CGG 0.485297 1_3:-55463446 None:intergenic
TCTGAATAATCGATTAATGA+TGG 0.486504 1_3:+55461310 Msa0126380:exon
TGGTTCCACCAATTCCCCTA+TGG 0.487442 1_3:-55464131 None:intergenic
GCTGTACAATCTGGCACATT+GGG 0.492450 1_3:+55463965 Msa0126380:CDS
ATTGATCAATTTAATTTCAA+CGG 0.492965 1_3:-55461092 None:intergenic
CAATTACTTCACGATAAAGC+TGG 0.497836 1_3:-55460989 None:intergenic
CACTGCCTTGACAATATTCG+TGG 0.504030 1_3:+55464094 Msa0126380:CDS
TGTCCTACGAAAAGCCAAAT+CGG 0.504507 1_3:+55463203 Msa0126380:CDS
CAAAACCAATTATTCCATCA+AGG 0.505616 1_3:-55464006 None:intergenic
GGTGTGCAGTGTGGTTGATA+TGG 0.506968 1_3:+55471639 Msa0126380:three_prime_UTR
CGCTGTACAATCTGGCACAT+TGG 0.507679 1_3:+55463964 Msa0126380:CDS
AAAGTGAAGGATGCAACGAC+TGG 0.508416 1_3:+55471441 Msa0126380:CDS
AGATTCTTATAGATGCAAAA+GGG 0.509842 1_3:+55471685 Msa0126380:three_prime_UTR
GAGACTCACCCAGTTCTAGT+AGG 0.514151 1_3:-55461515 None:intergenic
ATTTGCCATAGGGGAATTGG+TGG 0.515298 1_3:+55464126 Msa0126380:CDS
TGGTCCGATTCCTGGTTGTA+AGG 0.515945 1_3:+55463442 Msa0126380:CDS
TAATTTCAATTCAGGCTGAC+GGG 0.516305 1_3:-55466299 None:intergenic
TATAGCATAACTTATGGAGA+TGG 0.523472 1_3:+55463482 Msa0126380:CDS
CGTCGGAAAACGAGTTTAAG+TGG 0.524546 1_3:+55461416 Msa0126380:CDS
GGTTGTATTTCACTAAACTT+GGG 0.524940 1_3:+55463096 Msa0126380:intron
GGAGATGGAAGTGCAACTAC+TGG 0.525159 1_3:+55463497 Msa0126380:CDS
AGTTGGTCATAGACTATGAC+AGG 0.528228 1_3:-55466187 None:intergenic
AAAACCAATTATTCCATCAA+GGG 0.529475 1_3:-55464005 None:intergenic
TATGGAGATTTCCGTTGATC+CGG 0.531316 1_3:-55463550 None:intergenic
AAGGGCACAGTGATTGATAG+TGG 0.533492 1_3:+55466145 Msa0126380:CDS
GGTGGTGGAATATTTGCCAT+AGG 0.534159 1_3:+55464115 Msa0126380:CDS
TGGGCTTGGCTCTCCAAAGA+AGG 0.534533 1_3:+55463115 Msa0126380:CDS
GTGGTGGAATATTTGCCATA+GGG 0.535995 1_3:+55464116 Msa0126380:CDS
TTTGATTCTGGAAATGGGAA+GGG 0.536848 1_3:+55466127 Msa0126380:CDS
GAAAAGTGTGACCCAAACTA+AGG 0.537843 1_3:+55467753 Msa0126380:CDS
CTCCATAAGTTATGCTATAG+GGG 0.541427 1_3:-55463478 None:intergenic
GATTGATAGTGGAACAACCT+TGG 0.548951 1_3:+55466156 Msa0126380:CDS
CTAATTTCAATTCAGGCTGA+CGG 0.548990 1_3:-55466300 None:intergenic
ATTTGATTCTGGAAATGGGA+AGG 0.551449 1_3:+55466126 Msa0126380:CDS
TGGTGTTTCAGGTGCAGCGT+CGG 0.553360 1_3:+55461399 Msa0126380:CDS
CTCTTCCAGCATTAAAGTGA+AGG 0.554484 1_3:+55471428 Msa0126380:CDS
ACAGCTTGCTGCATCTCGAA+AGG 0.556530 1_3:+55464054 Msa0126380:CDS
AGTGTGACCCAAACTAAGGA+TGG 0.559654 1_3:+55467757 Msa0126380:CDS
GGTGTTTCCGCCTTACAACC+AGG 0.561933 1_3:-55463452 None:intergenic
TAACCTTGCAGTGTTGATGG+TGG 0.562260 1_3:+55467211 Msa0126380:intron
ACATACATATTTGGTACCAA+TGG 0.562501 1_3:-55464169 None:intergenic
CGAAATTTGAGTCCACTGAG+TGG 0.566394 1_3:+55460928 Msa0126380:five_prime_UTR
TATCACTTCCTGTATCAACT+TGG 0.567282 1_3:-55463148 None:intergenic
AGGTGTGGCGCTGTACAATC+TGG 0.571318 1_3:+55463956 Msa0126380:intron
ATGGCGTACTTTCCAGCATA+CGG 0.571746 1_3:-55466352 None:intergenic
TTGAGAATATGGCTATTGGA+TGG 0.573054 1_3:+55470983 Msa0126380:CDS
CAGTAGAGTGAATGAATGAG+TGG 0.577972 1_3:-55461138 None:intergenic
AAAAGTCAGAACAACTCCAT+TGG 0.586123 1_3:+55464153 Msa0126380:CDS
CTTGACAATATTCGTGGTGG+TGG 0.588390 1_3:+55464100 Msa0126380:CDS
CAAGCTTAACCGACTAAGAG+AGG 0.593128 1_3:-55461176 None:intergenic
TTGACTCTCTATGACCCAAA+GGG 0.594661 1_3:+55463362 Msa0126380:CDS
AGGAATCGGACCATCATATG+TGG 0.599832 1_3:-55463432 None:intergenic
CTGGTGTCCGATGTATTGGC+TGG 0.602129 1_3:+55467728 Msa0126380:CDS
AAGGACATGACACTTCTTGG+AGG 0.602130 1_3:+55467781 Msa0126380:CDS
GACCCAAACTAAGGATGGAA+AGG 0.607035 1_3:+55467762 Msa0126380:CDS
CCAGAATCAAATATATCCGA+GGG 0.608496 1_3:-55466115 None:intergenic
ATTGAAATTAGCTCGCATTG+AGG 0.611001 1_3:+55466312 Msa0126380:CDS
TCCAGAATCAAATATATCCG+AGG 0.613600 1_3:-55466116 None:intergenic
GAAATTTGAGTCCACTGAGT+GGG 0.614261 1_3:+55460929 Msa0126380:five_prime_UTR
AGTAGAGTGAATGAATGAGT+GGG 0.617908 1_3:-55461137 None:intergenic
TGATGTTCTACAGCTTCCCT+CGG 0.625997 1_3:+55466099 Msa0126380:CDS
GATTCTTATAGATGCAAAAG+GGG 0.635162 1_3:+55471686 Msa0126380:three_prime_UTR
CTTGACTCTCTATGACCCAA+AGG 0.636415 1_3:+55463361 Msa0126380:CDS
TAAGTTATGCTATAGGGGCA+GGG 0.637715 1_3:-55463473 None:intergenic
CTATGACCAACTAATTCCAA+AGG 0.638550 1_3:+55466198 Msa0126380:CDS
ACCACCAAGATTGAAATCAA+CGG 0.639049 1_3:-55461483 None:intergenic
CTATCTGTTCCAATATAAGG+TGG 0.639723 1_3:+55467294 Msa0126380:CDS
TCCGATTCCTGGTTGTAAGG+CGG 0.644021 1_3:+55463445 Msa0126380:CDS
CACCACCACGAATATTGTCA+AGG 0.649946 1_3:-55464099 None:intergenic
AACTACTGGATACTATGTCA+GGG 0.651961 1_3:+55463511 Msa0126380:CDS
TGGTGGAATATTTGCCATAG+GGG 0.652757 1_3:+55464117 Msa0126380:CDS
TATGACAGGAAGATAAGCCA+AGG 0.661057 1_3:-55466173 None:intergenic
ATGGTCTTCCTACTAGAACT+GGG 0.663957 1_3:+55461507 Msa0126380:CDS
TACAGGAAGTGATATTCTGT+GGG 0.670376 1_3:+55463157 Msa0126380:CDS
ACTGGAATAGTACATACAGT+GGG 0.679660 1_3:+55471459 Msa0126380:CDS
ATACAGGAAGTGATATTCTG+TGG 0.684061 1_3:+55463156 Msa0126380:CDS
GACTGGAATAGTACATACAG+TGG 0.688634 1_3:+55471458 Msa0126380:CDS
TTGTAGGGCACATTACAATG+TGG 0.689913 1_3:+55466051 Msa0126380:intron
TATTGGAACAGATAGTCATG+AGG 0.699625 1_3:-55467286 None:intergenic
TGCCTTGACAATATTCGTGG+TGG 0.718049 1_3:+55464097 Msa0126380:CDS
GAATGATAAGGTGTGCAGTG+TGG 0.729307 1_3:+55471630 Msa0126380:three_prime_UTR
CATCACGATCATCTTCGTCG+TGG 0.733562 1_3:+55461446 Msa0126380:CDS
GATGTGAAATGTGAGTATGG+AGG 0.752371 1_3:-55461212 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGTTTTTAAAAATATGTT+AGG + chr1_3:55462074-55462093 Msa0126380:intron 10.0%
!! AACAAAATTAAGAATAAAAT+CGG - chr1_3:55462525-55462544 None:intergenic 10.0%
!!! TATATTAGTTTATTTGATTT+AGG + chr1_3:55463075-55463094 Msa0126380:intron 10.0%
!! AAATACAAAAATTAAATAAG+GGG - chr1_3:55463312-55463331 None:intergenic 10.0%
!! GAAAATACAAAAATTAAATA+AGG - chr1_3:55463314-55463333 None:intergenic 10.0%
!! ATAAAATCCAATAAAAAAAA+TGG - chr1_3:55464596-55464615 None:intergenic 10.0%
!! ATTAGTATAAAATAAAATAG+AGG + chr1_3:55466672-55466691 Msa0126380:intron 10.0%
!!! CTTTAAAATTTTATTTAACT+AGG + chr1_3:55467063-55467082 Msa0126380:intron 10.0%
!!! TTTTTCTAATACTAAAAAAA+TGG - chr1_3:55471235-55471254 None:intergenic 10.0%
!!! ATTGATCAATTTAATTTCAA+CGG - chr1_3:55461095-55461114 None:intergenic 15.0%
!!! TACTTTTAATGTTATCATTA+CGG + chr1_3:55462111-55462130 Msa0126380:intron 15.0%
!!! AATAAGTTGAAAATAACTTA+TGG + chr1_3:55462800-55462819 Msa0126380:intron 15.0%
!! ATAAAACAGTTAATTCAAAA+AGG - chr1_3:55463778-55463797 None:intergenic 15.0%
!!! TTTTTGAATTAACTGTTTTA+TGG + chr1_3:55463777-55463796 Msa0126380:intron 15.0%
!!! ATTTTATTTTTGTTCTTTGA+TGG + chr1_3:55464609-55464628 Msa0126380:intron 15.0%
!!! TTTTATTTTTGTTCTTTGAT+GGG + chr1_3:55464610-55464629 Msa0126380:intron 15.0%
!!! CATTTTATGTATCATTTAAA+TGG - chr1_3:55465563-55465582 None:intergenic 15.0%
!! CTTAAAGACAAATTTATAAA+TGG + chr1_3:55465601-55465620 Msa0126380:intron 15.0%
!!! AAATTTATAAATGGTTGATA+TGG + chr1_3:55465610-55465629 Msa0126380:intron 15.0%
!! TAATCAAATATCATTAGAAT+AGG + chr1_3:55465705-55465724 Msa0126380:intron 15.0%
!! AATTCAATTAATATTTCTTC+TGG + chr1_3:55466242-55466261 Msa0126380:intron 15.0%
!! TTTATACAAAAATGTTACAA+TGG - chr1_3:55466381-55466400 None:intergenic 15.0%
!! TATTATTGTTTGCAAATATT+AGG + chr1_3:55466430-55466449 Msa0126380:intron 15.0%
!! ATTATTGTTTGCAAATATTA+GGG + chr1_3:55466431-55466450 Msa0126380:intron 15.0%
!!! TTGATTATTTTTCGATTTAT+TGG + chr1_3:55467897-55467916 Msa0126380:intron 15.0%
!!! TGATTATTTTTCGATTTATT+GGG + chr1_3:55467898-55467917 Msa0126380:intron 15.0%
!!! ATTATTTTCAATTTCAGATT+TGG + chr1_3:55470930-55470949 Msa0126380:intron 15.0%
!! TAGTATTAGAAAAATAAGAA+AGG + chr1_3:55471241-55471260 Msa0126380:intron 15.0%
!!! TTAACTTCTATTGTTTTTTA+GGG + chr1_3:55471339-55471358 Msa0126380:intron 15.0%
!! GTTATAAAAATAGTTTAACA+TGG - chr1_3:55471556-55471575 None:intergenic 15.0%
!!! GTTAAACTATTTTTATAACT+AGG + chr1_3:55471557-55471576 Msa0126380:CDS 15.0%
!!! GCGATTTTTTTAATTTTTTT+TGG + chr1_3:55471708-55471727 Msa0126380:three_prime_UTR 15.0%
!! TGTTATATATTAAATGATGA+AGG + chr1_3:55471738-55471757 Msa0126380:three_prime_UTR 15.0%
!!! TCTATGTTTGGAAAATTTTT+AGG - chr1_3:55461034-55461053 None:intergenic 20.0%
!!! AAGATTATCTTTTCTATGTT+TGG - chr1_3:55461046-55461065 None:intergenic 20.0%
!!! ATTATTGATTATACTAGCTT+TGG + chr1_3:55461346-55461365 Msa0126380:CDS 20.0%
!!! ACTTTTAATGTTATCATTAC+GGG + chr1_3:55462112-55462131 Msa0126380:intron 20.0%
!! ATGATGCTATATAGTTTAAT+TGG + chr1_3:55462362-55462381 Msa0126380:intron 20.0%
!! TTAACTGTAGTATAATGTAA+TGG + chr1_3:55462451-55462470 Msa0126380:intron 20.0%
!! TCTAAAAAAGATCGAAAAAA+TGG + chr1_3:55463000-55463019 Msa0126380:intron 20.0%
!! ATACAATACAATGTAAATTG+TGG - chr1_3:55463631-55463650 None:intergenic 20.0%
!!! ATTGTTGTTGAATTGAATTA+GGG + chr1_3:55463693-55463712 Msa0126380:intron 20.0%
!!! TAAAATATTTTCCATTCAAG+TGG + chr1_3:55463803-55463822 Msa0126380:intron 20.0%
!! CTTTAATTCTTTATCAATCT+AGG - chr1_3:55463869-55463888 None:intergenic 20.0%
!! GAATTAAAGAATAAAATCAC+TGG + chr1_3:55463880-55463899 Msa0126380:intron 20.0%
!! GATTAATGAACATACATATT+TGG - chr1_3:55464181-55464200 None:intergenic 20.0%
!!! TAGTTGTGGATTTTATTTTT+GGG + chr1_3:55464402-55464421 Msa0126380:intron 20.0%
!!! CAATTCTTCTTGTTTTTATT+TGG + chr1_3:55465355-55465374 Msa0126380:intron 20.0%
!! ATTAAAAGCAAGATATTTGA+TGG - chr1_3:55465689-55465708 None:intergenic 20.0%
!!! ATATATTTGATTCTGGAAAT+GGG + chr1_3:55466122-55466141 Msa0126380:CDS 20.0%
!! AAAAATGTTACAATGGTAAA+TGG - chr1_3:55466374-55466393 None:intergenic 20.0%
!!! TCATTATTCATTTTTCCTAT+TGG + chr1_3:55466539-55466558 Msa0126380:intron 20.0%
!!! CATTATTCATTTTTCCTATT+GGG + chr1_3:55466540-55466559 Msa0126380:intron 20.0%
!!! ATTTTTTATAGCACATAATG+TGG - chr1_3:55466837-55466856 None:intergenic 20.0%
!!! TCCTTTTCATTTTCTTTTTT+GGG + chr1_3:55466895-55466914 Msa0126380:intron 20.0%
!!! TTTTAAAGAACCATCTTAAA+TGG - chr1_3:55467051-55467070 None:intergenic 20.0%
!! CTTGTACAAAATTGAAATTT+GGG - chr1_3:55467388-55467407 None:intergenic 20.0%
!! ACTTGTACAAAATTGAAATT+TGG - chr1_3:55467389-55467408 None:intergenic 20.0%
!! TCATGTGATTGTAAATTAAA+TGG + chr1_3:55467521-55467540 Msa0126380:intron 20.0%
!! TAGAACTGAAAAATAAACTA+GGG - chr1_3:55468072-55468091 None:intergenic 20.0%
!! ATAGAACTGAAAAATAAACT+AGG - chr1_3:55468073-55468092 None:intergenic 20.0%
!! ATTTATCTATCTAACTTTGT+GGG + chr1_3:55468638-55468657 Msa0126380:intron 20.0%
!! TTACAAATGTAAGTTATTTG+AGG + chr1_3:55468934-55468953 Msa0126380:intron 20.0%
!! CAAATTATCAAATGCATAAA+AGG - chr1_3:55469846-55469865 None:intergenic 20.0%
!!! ATAAAAAATGTTGTTTTGCA+TGG - chr1_3:55470005-55470024 None:intergenic 20.0%
!!! AGTATAAACAAAAGCATAAT+AGG + chr1_3:55470268-55470287 Msa0126380:intron 20.0%
!!! AGAATGTTTATTTTTGTGAA+TGG + chr1_3:55470346-55470365 Msa0126380:intron 20.0%
!! TTTATCATATGTTATTCTTG+TGG - chr1_3:55470519-55470538 None:intergenic 20.0%
!! TAGACCAACATATTATTAAT+AGG - chr1_3:55470611-55470630 None:intergenic 20.0%
!!! TCTGATGTTAAAATTCATTT+TGG + chr1_3:55470678-55470697 Msa0126380:intron 20.0%
!! ATTCTTAAATTAACACCAAA+TGG - chr1_3:55470776-55470795 None:intergenic 20.0%
!! TTTGCATATTAATGTATAAC+CGG - chr1_3:55471081-55471100 None:intergenic 20.0%
!!! GTTAACTTCTATTGTTTTTT+AGG + chr1_3:55471338-55471357 Msa0126380:intron 20.0%
!! CAATATTCTACCAATTAAAA+AGG - chr1_3:55471511-55471530 None:intergenic 20.0%
! ACTAAAAGAAAACACAAGAT+AGG + chr1_3:55460894-55460913 Msa0126380:five_prime_UTR 25.0%
! TCTGAATAATCGATTAATGA+TGG + chr1_3:55461310-55461329 Msa0126380:exon 25.0%
! TCATATTCATTAAATTGACG+TGG - chr1_3:55461605-55461624 None:intergenic 25.0%
!! TGATTCAGTGTTATTAATAG+TGG + chr1_3:55461671-55461690 Msa0126380:intron 25.0%
!!! TCAGTTTTAATTCATGTTTC+TGG - chr1_3:55461853-55461872 None:intergenic 25.0%
!!! TTTTTGCATATTGGTGATAT+CGG - chr1_3:55462180-55462199 None:intergenic 25.0%
! TATAGTTTAATTGGTATGCA+CGG + chr1_3:55462371-55462390 Msa0126380:intron 25.0%
! ATTATTGAAGCAATACAATG+TGG + chr1_3:55462605-55462624 Msa0126380:intron 25.0%
! AAACATGCTCTAACTATAAA+CGG + chr1_3:55462913-55462932 Msa0126380:intron 25.0%
! TATTAGGAGACAAACAAATA+GGG - chr1_3:55462965-55462984 None:intergenic 25.0%
! TTATTAGGAGACAAACAAAT+AGG - chr1_3:55462966-55462985 None:intergenic 25.0%
!!! TTTCGATCTTTTTTAGATCT+TGG - chr1_3:55462997-55463016 None:intergenic 25.0%
!!! AAAATAGCAGCATCATTTTT+GGG + chr1_3:55463582-55463601 Msa0126380:CDS 25.0%
!! ATTGTATGTTGTTGAGTTTT+CGG + chr1_3:55463644-55463663 Msa0126380:intron 25.0%
!! CATTGTTGTTGAATTGAATT+AGG + chr1_3:55463692-55463711 Msa0126380:intron 25.0%
!! TTGTTGTTGAATTGAATTAG+GGG + chr1_3:55463694-55463713 Msa0126380:intron 25.0%
!!! TTGTTATTTTTTCTCATGAG+TGG + chr1_3:55463720-55463739 Msa0126380:intron 25.0%
!!! TGTTATTTTTTCTCATGAGT+GGG + chr1_3:55463721-55463740 Msa0126380:intron 25.0%
! AAAACCAATTATTCCATCAA+GGG - chr1_3:55464008-55464027 None:intergenic 25.0%
!! AGTTGATATGCAATTAAAGT+AGG + chr1_3:55464341-55464360 Msa0126380:intron 25.0%
! GTTGATATGCAATTAAAGTA+GGG + chr1_3:55464342-55464361 Msa0126380:intron 25.0%
!!! GAAAAGAAATTTTCTAGTTG+TGG + chr1_3:55464388-55464407 Msa0126380:intron 25.0%
!!! CTAGTTGTGGATTTTATTTT+TGG + chr1_3:55464401-55464420 Msa0126380:intron 25.0%
!! TTTGCATTTTTCTATCCATT+TGG + chr1_3:55464802-55464821 Msa0126380:intron 25.0%
! CACTAAAACATTTATCCAAA+TGG - chr1_3:55464820-55464839 None:intergenic 25.0%
!!! CATTTGGATAAATGTTTTAG+TGG + chr1_3:55464818-55464837 Msa0126380:intron 25.0%
! AATACAGTAACTGATGTTAA+GGG + chr1_3:55465047-55465066 Msa0126380:intron 25.0%
!!! GAAGGCAAATTTTTGTTTAT+GGG + chr1_3:55465256-55465275 Msa0126380:intron 25.0%
! TTGAAGAATATTGAAGTTGA+TGG + chr1_3:55466076-55466095 Msa0126380:CDS 25.0%
!! GATATATTTGATTCTGGAAA+TGG + chr1_3:55466121-55466140 Msa0126380:CDS 25.0%
! TTTCTAGATACAAATACCTT+TGG - chr1_3:55466217-55466236 None:intergenic 25.0%
!! AACAGCAAAATATGACATTT+TGG - chr1_3:55466604-55466623 None:intergenic 25.0%
!! GTCCTTTTCATTTTCTTTTT+TGG + chr1_3:55466894-55466913 Msa0126380:intron 25.0%
! GTCTCTACACATATAATATA+TGG - chr1_3:55467500-55467519 None:intergenic 25.0%
! TATCAGTAAAATTCTCCATA+TGG - chr1_3:55467598-55467617 None:intergenic 25.0%
! TGCAAACTTATAAGCAAATA+AGG - chr1_3:55467937-55467956 None:intergenic 25.0%
! TCATTCTAAACTATTCAACT+TGG + chr1_3:55467983-55468002 Msa0126380:intron 25.0%
! GATTTATCTATCTAACTTTG+TGG + chr1_3:55468637-55468656 Msa0126380:intron 25.0%
!!! AATTATGTGTTACTTGTACT+TGG + chr1_3:55468826-55468845 Msa0126380:intron 25.0%
! CTGGTTGAAATCAAATTAAA+AGG - chr1_3:55468856-55468875 None:intergenic 25.0%
!! ATTTGTAACAAGCTTTTTGA+GGG - chr1_3:55468922-55468941 None:intergenic 25.0%
! AACATCATATACTTGTTTGA+AGG - chr1_3:55468998-55469017 None:intergenic 25.0%
! TTTGTTCTCTAATGAAAGAT+TGG + chr1_3:55469075-55469094 Msa0126380:intron 25.0%
! AATGTCAATATGATTCCTAT+CGG + chr1_3:55469579-55469598 Msa0126380:intron 25.0%
! CTTGATAAGAGTTTATAAAC+AGG - chr1_3:55469695-55469714 None:intergenic 25.0%
! ACAAATGACATATTCACAAT+TGG + chr1_3:55470058-55470077 Msa0126380:intron 25.0%
!! ATAAACAAAAGCATAATAGG+TGG + chr1_3:55470271-55470290 Msa0126380:intron 25.0%
!! TAAACAAAAGCATAATAGGT+GGG + chr1_3:55470272-55470291 Msa0126380:intron 25.0%
! CCTTCATTCCATTTATAATT+TGG - chr1_3:55470318-55470337 None:intergenic 25.0%
! CCAAATTATAAATGGAATGA+AGG + chr1_3:55470315-55470334 Msa0126380:intron 25.0%
! GCATCCTATTAATAATATGT+TGG + chr1_3:55470604-55470623 Msa0126380:intron 25.0%
! AGAGAAAATTAAGGAAGAAA+GGG - chr1_3:55470732-55470751 None:intergenic 25.0%
! AAGAGAAAATTAAGGAAGAA+AGG - chr1_3:55470733-55470752 None:intergenic 25.0%
!! CTTCCTTAATTTTCTCTTAT+AGG + chr1_3:55470735-55470754 Msa0126380:intron 25.0%
! AAGCCTATAAGAGAAAATTA+AGG - chr1_3:55470741-55470760 None:intergenic 25.0%
! TCTAATGCTAGAATTCATTT+GGG + chr1_3:55470857-55470876 Msa0126380:intron 25.0%
!! TTTTTACCATACAACAAAGT+AGG - chr1_3:55471055-55471074 None:intergenic 25.0%
! TGTTGTATGGTAAAAATAAC+CGG + chr1_3:55471059-55471078 Msa0126380:intron 25.0%
! TAATATGCAAAATTAGTCCA+AGG + chr1_3:55471090-55471109 Msa0126380:intron 25.0%
! AAAATATTTCAAACTGGAGT+AGG - chr1_3:55471186-55471205 None:intergenic 25.0%
! TCATAATTCCTTGAATGATA+AGG + chr1_3:55471618-55471637 Msa0126380:three_prime_UTR 25.0%
! TAGATTCTTATAGATGCAAA+AGG + chr1_3:55471684-55471703 Msa0126380:three_prime_UTR 25.0%
! AGATTCTTATAGATGCAAAA+GGG + chr1_3:55471685-55471704 Msa0126380:three_prime_UTR 25.0%
!!! TGTTTTTTTCCTCTCTTAGT+CGG + chr1_3:55461167-55461186 Msa0126380:five_prime_UTR 30.0%
TATGATGTGAAATGTGAGTA+TGG - chr1_3:55461218-55461237 None:intergenic 30.0%
! AACTCTCTATAACAGCTTTT+TGG - chr1_3:55461652-55461671 None:intergenic 30.0%
TGTATGTTTGGTATCACAAT+GGG - chr1_3:55461927-55461946 None:intergenic 30.0%
ATTGTGATACCAAACATACA+CGG + chr1_3:55461927-55461946 Msa0126380:intron 30.0%
GATGTGTAATAGTGGTATAA+CGG + chr1_3:55462269-55462288 Msa0126380:intron 30.0%
! ACTCAGTGTTGTTAAATAAC+TGG - chr1_3:55462302-55462321 None:intergenic 30.0%
TGTGGAACTTGATAAAATCT+AGG + chr1_3:55462623-55462642 Msa0126380:intron 30.0%
GTGGAACTTGATAAAATCTA+GGG + chr1_3:55462624-55462643 Msa0126380:intron 30.0%
TGGAACTTGATAAAATCTAG+GGG + chr1_3:55462625-55462644 Msa0126380:intron 30.0%
GCTTATTTGAGCTTATCTAT+TGG - chr1_3:55462887-55462906 None:intergenic 30.0%
TAGTTAGAGCATGTTTAGAT+TGG - chr1_3:55462909-55462928 None:intergenic 30.0%
AACATGCTCTAACTATAAAC+GGG + chr1_3:55462914-55462933 Msa0126380:intron 30.0%
AGGTTGTATTTCACTAAACT+TGG + chr1_3:55463095-55463114 Msa0126380:intron 30.0%
GGTTGTATTTCACTAAACTT+GGG + chr1_3:55463096-55463115 Msa0126380:intron 30.0%
TCTCCATAAGTTATGCTATA+GGG - chr1_3:55463482-55463501 None:intergenic 30.0%
ATCTCCATAAGTTATGCTAT+AGG - chr1_3:55463483-55463502 None:intergenic 30.0%
TATAGCATAACTTATGGAGA+TGG + chr1_3:55463482-55463501 Msa0126380:CDS 30.0%
!!! AAAATGATGCTGCTATTTTG+CGG - chr1_3:55463581-55463600 None:intergenic 30.0%
! CAAAATAGCAGCATCATTTT+TGG + chr1_3:55463581-55463600 Msa0126380:CDS 30.0%
! TTGTATGTTGTTGAGTTTTC+GGG + chr1_3:55463645-55463664 Msa0126380:intron 30.0%
TGTTGTTGAATTGAATTAGG+GGG + chr1_3:55463695-55463714 Msa0126380:intron 30.0%
CAGTTAATTCAAAAAGGCAA+CGG - chr1_3:55463772-55463791 None:intergenic 30.0%
CAAAACCAATTATTCCATCA+AGG - chr1_3:55464009-55464028 None:intergenic 30.0%
!! CTTGATGGAATAATTGGTTT+TGG + chr1_3:55464007-55464026 Msa0126380:CDS 30.0%
ACATACATATTTGGTACCAA+TGG - chr1_3:55464172-55464191 None:intergenic 30.0%
TTACATGACAACCAATATCA+AGG - chr1_3:55464222-55464241 None:intergenic 30.0%
!!! ATTTTATTTTTGGGAAGCCT+TGG + chr1_3:55464411-55464430 Msa0126380:intron 30.0%
!!! TATGCTGTTTTTTACACAAG+AGG - chr1_3:55464497-55464516 None:intergenic 30.0%
CTTGTGTAAAAAACAGCATA+AGG + chr1_3:55464497-55464516 Msa0126380:intron 30.0%
TTAATAGTGGTCATGAATCT+CGG - chr1_3:55464750-55464769 None:intergenic 30.0%
TATTAAAACCAACCACTGTA+GGG + chr1_3:55464764-55464783 Msa0126380:intron 30.0%
ACCCTTAAAATCAATGTAGT+GGG - chr1_3:55464857-55464876 None:intergenic 30.0%
AACCCTTAAAATCAATGTAG+TGG - chr1_3:55464858-55464877 None:intergenic 30.0%
!! TTTCTGAAATATACCATCCA+TGG - chr1_3:55464916-55464935 None:intergenic 30.0%
TGGATGGTATATTTCAGAAA+AGG + chr1_3:55464916-55464935 Msa0126380:intron 30.0%
GGATGGTATATTTCAGAAAA+GGG + chr1_3:55464917-55464936 Msa0126380:intron 30.0%
ACCTTTCATTTATTACTCCT+AGG - chr1_3:55465009-55465028 None:intergenic 30.0%
CAATACAGTAACTGATGTTA+AGG + chr1_3:55465046-55465065 Msa0126380:intron 30.0%
CATAGCTTAACTGCAATAAT+AGG - chr1_3:55465073-55465092 None:intergenic 30.0%
CTATTATTGCAGTTAAGCTA+TGG + chr1_3:55465071-55465090 Msa0126380:intron 30.0%
GAGGTATATTCCAAAAATGA+GGG + chr1_3:55465107-55465126 Msa0126380:intron 30.0%
TCCTTTCATCTATTACTACT+GGG - chr1_3:55465196-55465215 None:intergenic 30.0%
!! GGAAGGCAAATTTTTGTTTA+TGG + chr1_3:55465255-55465274 Msa0126380:intron 30.0%
CTGTGAACATATGAGTATAT+TGG - chr1_3:55465383-55465402 None:intergenic 30.0%
CTTTGGCATTTCTATTATTG+TGG + chr1_3:55465435-55465454 Msa0126380:intron 30.0%
CTAAGATGGATATATCCTAT+GGG - chr1_3:55465919-55465938 None:intergenic 30.0%
! TCTAAGATGGATATATCCTA+TGG - chr1_3:55465920-55465939 None:intergenic 30.0%
TCCATGAATATTCTTTCAGT+TGG + chr1_3:55465955-55465974 Msa0126380:intron 30.0%
ACCAACTGAAAGAATATTCA+TGG - chr1_3:55465959-55465978 None:intergenic 30.0%
!! TTGATATTCAGTTTAGCTCT+TGG + chr1_3:55465989-55466008 Msa0126380:intron 30.0%
!! TGATATTCAGTTTAGCTCTT+GGG + chr1_3:55465990-55466009 Msa0126380:intron 30.0%
!! CAAATACCTTTGGAATTAGT+TGG - chr1_3:55466207-55466226 None:intergenic 30.0%
!! TATTTCTTCTGGAGTACTTA+TGG + chr1_3:55466253-55466272 Msa0126380:intron 30.0%
! TTTAAATGTTTTCCGTATGC+TGG + chr1_3:55466340-55466359 Msa0126380:CDS 30.0%
!! TTCATTTTTCCTATTGGGTA+TGG + chr1_3:55466545-55466564 Msa0126380:intron 30.0%
!!! AGAGTGCTAATTCCTTTTTT+CGG + chr1_3:55466872-55466891 Msa0126380:intron 30.0%
AAATGAAAAGGACCGAAAAA+AGG - chr1_3:55466887-55466906 None:intergenic 30.0%
GCCCAAAAAAGAAAATGAAA+AGG - chr1_3:55466899-55466918 None:intergenic 30.0%
!! TCCATTTCCTTAGTTTGTTA+AGG + chr1_3:55466926-55466945 Msa0126380:intron 30.0%
!! CCATTTCCTTAGTTTGTTAA+GGG + chr1_3:55466927-55466946 Msa0126380:intron 30.0%
ATTACTCCCTTAACAAACTA+AGG - chr1_3:55466936-55466955 None:intergenic 30.0%
TACAAAAGAGCCATTTAAGA+TGG + chr1_3:55467038-55467057 Msa0126380:intron 30.0%
TCAAAATGTAGTTTGACAAC+TGG - chr1_3:55467241-55467260 None:intergenic 30.0%
! AGTTGTCAAACTACATTTTG+AGG + chr1_3:55467240-55467259 Msa0126380:CDS 30.0%
! GTTGTCAAACTACATTTTGA+GGG + chr1_3:55467241-55467260 Msa0126380:CDS 30.0%
TGACTATCTGTTCCAATATA+AGG + chr1_3:55467291-55467310 Msa0126380:CDS 30.0%
AAGTTCATACCACCTTATAT+TGG - chr1_3:55467306-55467325 None:intergenic 30.0%
ATATAACACACAAAACACCT+GGG - chr1_3:55467458-55467477 None:intergenic 30.0%
TGATGATCTAAATTGCCATA+TGG + chr1_3:55467580-55467599 Msa0126380:intron 30.0%
! TTTCCTTAATTTTGTCCTCT+AGG + chr1_3:55467705-55467724 Msa0126380:intron 30.0%
ATTCCTCATATTGAACCAAA+TGG + chr1_3:55467856-55467875 Msa0126380:intron 30.0%
! ATTCCATTTGGTTCAATATG+AGG - chr1_3:55467862-55467881 None:intergenic 30.0%
AACGCGCAGATAAAAAAAAT+AGG - chr1_3:55468031-55468050 None:intergenic 30.0%
CACAAATAACACAGTTATCA+AGG - chr1_3:55468494-55468513 None:intergenic 30.0%
!!! TTTTTTGGTTCGTTGTATGA+TGG + chr1_3:55468562-55468581 Msa0126380:intron 30.0%
!! ATGTTGTGATGTATTTTAGG+AGG - chr1_3:55468733-55468752 None:intergenic 30.0%
! GTGATGTTGTGATGTATTTT+AGG - chr1_3:55468736-55468755 None:intergenic 30.0%
TTCAGAGATAAAGATGACAA+AGG - chr1_3:55468808-55468827 None:intergenic 30.0%
!! TTTGTAACAAGCTTTTTGAG+GGG - chr1_3:55468921-55468940 None:intergenic 30.0%
! CATTTGTAACAAGCTTTTTG+AGG - chr1_3:55468923-55468942 None:intergenic 30.0%
!!! ATGTTTTGTTGATTCCAAAG+AGG + chr1_3:55469013-55469032 Msa0126380:intron 30.0%
CAAAACATATAGAAGTTGAC+TGG - chr1_3:55469059-55469078 None:intergenic 30.0%
!! TTATCACATTCTAGTTCCAT+AGG + chr1_3:55469126-55469145 Msa0126380:intron 30.0%
GTAAGCAAGTTATCAATACA+CGG - chr1_3:55469251-55469270 None:intergenic 30.0%
! TCAGGTTATTGTCTTTTCAT+GGG - chr1_3:55469300-55469319 None:intergenic 30.0%
!! TTCAGGTTATTGTCTTTTCA+TGG - chr1_3:55469301-55469320 None:intergenic 30.0%
AATGTCAATATGATTCCCAT+CGG + chr1_3:55469371-55469390 Msa0126380:intron 30.0%
! TCAGGTTATTGTCTTTTCAT+GGG - chr1_3:55469300-55469319 None:intergenic 30.0%
!! TTCAGGTTATTGTCTTTTCA+TGG - chr1_3:55469301-55469320 None:intergenic 30.0%
AGGAATCATATTGACATTGT+TGG - chr1_3:55469577-55469596 None:intergenic 30.0%
GTGATCCTTTGTAGAAATTT+GGG + chr1_3:55469623-55469642 Msa0126380:intron 30.0%
TGATCCTTTGTAGAAATTTG+GGG + chr1_3:55469624-55469643 Msa0126380:intron 30.0%
GATAAGAGTTTATAAACAGG+AGG - chr1_3:55469692-55469711 None:intergenic 30.0%
TCAAATGCATAAAAGGATGT+TGG - chr1_3:55469839-55469858 None:intergenic 30.0%
! CATATTCACAATTGGTGATA+AGG + chr1_3:55470066-55470085 Msa0126380:intron 30.0%
TTGAATGTTTAGATAGACAC+TGG - chr1_3:55470166-55470185 None:intergenic 30.0%
GCATGGTACCAAATTATAAA+TGG + chr1_3:55470307-55470326 Msa0126380:intron 30.0%
AGAAAATTAAGGAAGAAAGG+GGG - chr1_3:55470730-55470749 None:intergenic 30.0%
GAGAAAATTAAGGAAGAAAG+GGG - chr1_3:55470731-55470750 None:intergenic 30.0%
!! CTTTAAAATGTTGAGCCATT+TGG + chr1_3:55470758-55470777 Msa0126380:intron 30.0%
AGAAAAAGAGAGAGAAAATG+AGG - chr1_3:55470836-55470855 None:intergenic 30.0%
CTCTAATGCTAGAATTCATT+TGG + chr1_3:55470856-55470875 Msa0126380:intron 30.0%
CAGAATTATGAAAGGCTAAT+TGG - chr1_3:55471029-55471048 None:intergenic 30.0%
GTAGGAAACAGAATTATGAA+AGG - chr1_3:55471037-55471056 None:intergenic 30.0%
GTTATAAATTGATGCAACCT+TGG - chr1_3:55471110-55471129 None:intergenic 30.0%
AATGAAGAGGAAGTAATCTT+AGG - chr1_3:55471134-55471153 None:intergenic 30.0%
AGCTGCAAAATATTTCAAAC+TGG - chr1_3:55471192-55471211 None:intergenic 30.0%
!! TAAGATTCATGTGGATTAGA+TGG - chr1_3:55471316-55471335 None:intergenic 30.0%
TCTAATCCACATGAATCTTA+TGG + chr1_3:55471316-55471335 Msa0126380:intron 30.0%
AGTTAACCATAAGATTCATG+TGG - chr1_3:55471325-55471344 None:intergenic 30.0%
! CACTGTGTTATTGTTTCTTT+AGG + chr1_3:55471405-55471424 Msa0126380:intron 30.0%
! TCAGCTTCTACCTTTTTAAT+TGG + chr1_3:55471498-55471517 Msa0126380:CDS 30.0%
ATAAGAATCTATACGAGAAC+TGG - chr1_3:55471675-55471694 None:intergenic 30.0%
GATTCTTATAGATGCAAAAG+GGG + chr1_3:55471686-55471705 Msa0126380:three_prime_UTR 30.0%
CAATTACTTCACGATAAAGC+TGG - chr1_3:55460992-55461011 None:intergenic 35.0%
AGTAGAGTGAATGAATGAGT+GGG - chr1_3:55461140-55461159 None:intergenic 35.0%
! GAAATTTTGTGTGTTGCGAA+TGG + chr1_3:55461368-55461387 Msa0126380:CDS 35.0%
TGTTGCGAATGGAGATAATT+TGG + chr1_3:55461379-55461398 Msa0126380:CDS 35.0%
!! TGGAGATAATTTGGTGTTTC+AGG + chr1_3:55461388-55461407 Msa0126380:CDS 35.0%
!! TCATCCGTTGATTTCAATCT+TGG + chr1_3:55461479-55461498 Msa0126380:CDS 35.0%
ACCACCAAGATTGAAATCAA+CGG - chr1_3:55461486-55461505 None:intergenic 35.0%
! GATTTCAATCTTGGTGGTAA+TGG + chr1_3:55461488-55461507 Msa0126380:CDS 35.0%
! TGATCTACTCATCGGATTTT+TGG - chr1_3:55461701-55461720 None:intergenic 35.0%
GTGTATGTTTGGTATCACAA+TGG - chr1_3:55461928-55461947 None:intergenic 35.0%
!! TGCTGATTCAGTAATGAGAT+GGG - chr1_3:55462041-55462060 None:intergenic 35.0%
!! ATGCTGATTCAGTAATGAGA+TGG - chr1_3:55462042-55462061 None:intergenic 35.0%
AATCCATACCACTGAAATAG+CGG - chr1_3:55462207-55462226 None:intergenic 35.0%
ATGGATTCACAACAGCATAT+TGG + chr1_3:55462220-55462239 Msa0126380:intron 35.0%
CACTATTACACATCAGTACT+TGG - chr1_3:55462263-55462282 None:intergenic 35.0%
!! CAAGTACTGATGTGTAATAG+TGG + chr1_3:55462261-55462280 Msa0126380:intron 35.0%
! TCTCGCTGTGAAGATATTTT+AGG + chr1_3:55462421-55462440 Msa0126380:intron 35.0%
CTTATTTCCATAATCTCTCC+AGG - chr1_3:55462786-55462805 None:intergenic 35.0%
ATGGACATGTCATAACTCAT+AGG + chr1_3:55462819-55462838 Msa0126380:intron 35.0%
TAAGCACTTGTGAGATTGTT+TGG - chr1_3:55462862-55462881 None:intergenic 35.0%
ACATGCTCTAACTATAAACG+GGG + chr1_3:55462915-55462934 Msa0126380:intron 35.0%
! ATCTTGGTGTGAGGTTTATT+AGG - chr1_3:55462981-55463000 None:intergenic 35.0%
!!! CTTTTTTAGATCTTGGTGTG+AGG - chr1_3:55462990-55463009 None:intergenic 35.0%
TATTTCACTAAACTTGGGCT+TGG + chr1_3:55463101-55463120 Msa0126380:CDS 35.0%
!! TACTATGTCCAAGTTGATAC+AGG + chr1_3:55463140-55463159 Msa0126380:CDS 35.0%
TATCACTTCCTGTATCAACT+TGG - chr1_3:55463151-55463170 None:intergenic 35.0%
ATACAGGAAGTGATATTCTG+TGG + chr1_3:55463156-55463175 Msa0126380:CDS 35.0%
TACAGGAAGTGATATTCTGT+GGG + chr1_3:55463157-55463176 Msa0126380:CDS 35.0%
! AATGCATACATACACCGATT+TGG - chr1_3:55463220-55463239 None:intergenic 35.0%
! GTTGTTGTTGTTACAACAGA+TGG + chr1_3:55463337-55463356 Msa0126380:intron 35.0%
! TTTTGCTCTTCCACATATGA+TGG + chr1_3:55463422-55463441 Msa0126380:CDS 35.0%
CTCCATAAGTTATGCTATAG+GGG - chr1_3:55463481-55463500 None:intergenic 35.0%
AACTACTGGATACTATGTCA+GGG + chr1_3:55463511-55463530 Msa0126380:CDS 35.0%
!!! TGGAATAATTGGTTTTGGAC+AGG + chr1_3:55464012-55464031 Msa0126380:CDS 35.0%
AATATTTGCCATAGGGGAAT+TGG + chr1_3:55464123-55464142 Msa0126380:CDS 35.0%
! AATGGAGTTGTTCTGACTTT+TGG - chr1_3:55464154-55464173 None:intergenic 35.0%
AAAAGTCAGAACAACTCCAT+TGG + chr1_3:55464153-55464172 Msa0126380:CDS 35.0%
TTGATCTCATGCCTTGATAT+TGG + chr1_3:55464208-55464227 Msa0126380:intron 35.0%
TTGGTTGTCATGTAAATCCA+AGG + chr1_3:55464227-55464246 Msa0126380:intron 35.0%
TGGTTGTCATGTAAATCCAA+GGG + chr1_3:55464228-55464247 Msa0126380:intron 35.0%
GATCAATTGATCGTGAAATG+AGG - chr1_3:55464308-55464327 None:intergenic 35.0%
CATACAATACACCAATTGGT+GGG + chr1_3:55464523-55464542 Msa0126380:intron 35.0%
CAATAAAAAAAATGGCAGCC+CGG - chr1_3:55464588-55464607 None:intergenic 35.0%
!!! ACAGTGGTTGGTTTTAATAG+TGG - chr1_3:55464763-55464782 None:intergenic 35.0%
CTATTAAAACCAACCACTGT+AGG + chr1_3:55464763-55464782 Msa0126380:intron 35.0%
!!! AGCCCACTACATTGATTTTA+AGG + chr1_3:55464852-55464871 Msa0126380:intron 35.0%
!!! GCCCACTACATTGATTTTAA+GGG + chr1_3:55464853-55464872 Msa0126380:intron 35.0%
AAATATACCATCCATGGCTT+CGG - chr1_3:55464910-55464929 None:intergenic 35.0%
TATTTCAGAAAAGGGAGAAG+AGG + chr1_3:55464925-55464944 Msa0126380:intron 35.0%
ATTTCAGAAAAGGGAGAAGA+GGG + chr1_3:55464926-55464945 Msa0126380:intron 35.0%
ACACGTGAAAGAGATTTAGT+GGG + chr1_3:55464949-55464968 Msa0126380:intron 35.0%
GGAGAGATGTTTATACTAAC+TGG + chr1_3:55464970-55464989 Msa0126380:intron 35.0%
ATACTAACTGGAAATCGAGT+AGG + chr1_3:55464982-55465001 Msa0126380:intron 35.0%
TACTAACTGGAAATCGAGTA+GGG + chr1_3:55464983-55465002 Msa0126380:intron 35.0%
GCCTAGGAGTAATAAATGAA+AGG + chr1_3:55465005-55465024 Msa0126380:intron 35.0%
! GGAGGTATATTCCAAAAATG+AGG + chr1_3:55465106-55465125 Msa0126380:intron 35.0%
ATTCCAAAAATGAGGGAAAG+AGG + chr1_3:55465114-55465133 Msa0126380:intron 35.0%
TCCCAGTAGTAATAGATGAA+AGG + chr1_3:55465192-55465211 Msa0126380:intron 35.0%
CTCCTTTCATCTATTACTAC+TGG - chr1_3:55465197-55465216 None:intergenic 35.0%
CAGTAGTAATAGATGAAAGG+AGG + chr1_3:55465195-55465214 Msa0126380:intron 35.0%
TAGTAATAGATGAAAGGAGG+TGG + chr1_3:55465198-55465217 Msa0126380:intron 35.0%
TGTGTATTGAGGTAGATGTT+CGG - chr1_3:55465477-55465496 None:intergenic 35.0%
!!! TTTTTTTGTCACACCCTTGT+TGG + chr1_3:55465756-55465775 Msa0126380:intron 35.0%
! GTTTTCAAAGCAGTCTAAGA+TGG - chr1_3:55465933-55465952 None:intergenic 35.0%
! AGTCTGTTGTTGACTATTGT+AGG + chr1_3:55466035-55466054 Msa0126380:intron 35.0%
! GTCTGTTGTTGACTATTGTA+GGG + chr1_3:55466036-55466055 Msa0126380:intron 35.0%
CCAGAATCAAATATATCCGA+GGG - chr1_3:55466118-55466137 None:intergenic 35.0%
TCCAGAATCAAATATATCCG+AGG - chr1_3:55466119-55466138 None:intergenic 35.0%
! ATTTGATTCTGGAAATGGGA+AGG + chr1_3:55466126-55466145 Msa0126380:CDS 35.0%
! TTTGATTCTGGAAATGGGAA+GGG + chr1_3:55466127-55466146 Msa0126380:CDS 35.0%
CTATGACCAACTAATTCCAA+AGG + chr1_3:55466198-55466217 Msa0126380:CDS 35.0%
TAATTTCAATTCAGGCTGAC+GGG - chr1_3:55466302-55466321 None:intergenic 35.0%
CTAATTTCAATTCAGGCTGA+CGG - chr1_3:55466303-55466322 None:intergenic 35.0%
ATGCGAGCTAATTTCAATTC+AGG - chr1_3:55466310-55466329 None:intergenic 35.0%
ATTGAAATTAGCTCGCATTG+AGG + chr1_3:55466312-55466331 Msa0126380:CDS 35.0%
! TTAACTTTTGCACTTGAGCA+AGG + chr1_3:55466749-55466768 Msa0126380:intron 35.0%
CCCTTAACAAACTAAGGAAA+TGG - chr1_3:55466930-55466949 None:intergenic 35.0%
TTGTTAAGGGAGTAATTGAG+TGG + chr1_3:55466940-55466959 Msa0126380:intron 35.0%
TGTTAAGGGAGTAATTGAGT+GGG + chr1_3:55466941-55466960 Msa0126380:intron 35.0%
TATTGGAACAGATAGTCATG+AGG - chr1_3:55467289-55467308 None:intergenic 35.0%
CTATCTGTTCCAATATAAGG+TGG + chr1_3:55467294-55467313 Msa0126380:CDS 35.0%
GATATAACACACAAAACACC+TGG - chr1_3:55467459-55467478 None:intergenic 35.0%
TCGAAGTCAAGAGTTAACAA+AGG - chr1_3:55467560-55467579 None:intergenic 35.0%
TAGCTATTGAGCATTCCATT+TGG - chr1_3:55467874-55467893 None:intergenic 35.0%
GAAGTTGTCCCAACAAAAAT+AGG - chr1_3:55468321-55468340 None:intergenic 35.0%
!!! TGTTTTTGGTCTTTTGTCAC+TGG + chr1_3:55468431-55468450 Msa0126380:intron 35.0%
!! AGGTCTACTGGTTCATAATT+TGG + chr1_3:55468466-55468485 Msa0126380:intron 35.0%
!!! CTGCACTTGCTTTGTTTTTT+TGG + chr1_3:55468547-55468566 Msa0126380:intron 35.0%
ATTACCAAAATGAGCCAAAG+TGG - chr1_3:55468612-55468631 None:intergenic 35.0%
TATCTAACTTTGTGGGATCA+TGG + chr1_3:55468645-55468664 Msa0126380:intron 35.0%
CCAAGTTAGAGATAAAGAGA+GGG - chr1_3:55468708-55468727 None:intergenic 35.0%
TATCGTCACCAAATCTTTGT+GGG - chr1_3:55468962-55468981 None:intergenic 35.0%
ATATCGTCACCAAATCTTTG+TGG - chr1_3:55468963-55468982 None:intergenic 35.0%
ATTAGAGAGAAGATCCTCTT+TGG - chr1_3:55469030-55469049 None:intergenic 35.0%
TCTCTAATGAAAGATTGGAC+TGG + chr1_3:55469080-55469099 Msa0126380:intron 35.0%
TTTCAGTGAAATTGGTCCTA+TGG - chr1_3:55469145-55469164 None:intergenic 35.0%
GAGTTGCATTTCAGTGAAAT+TGG - chr1_3:55469153-55469172 None:intergenic 35.0%
! TGGGTGGAAGTATAATTTAG+TGG - chr1_3:55469281-55469300 None:intergenic 35.0%
GGGAATCATATTGACATTGT+TGG - chr1_3:55469369-55469388 None:intergenic 35.0%
GTAAGCAGGTTGTTAATACA+CGG - chr1_3:55469456-55469475 None:intergenic 35.0%
! TGGGTGGAAGTATAATTTAG+TGG - chr1_3:55469281-55469300 None:intergenic 35.0%
GGTGATCCTTTGTAGAAATT+TGG + chr1_3:55469622-55469641 Msa0126380:intron 35.0%
CTAACTCATCCTTACAAAAC+CGG + chr1_3:55469648-55469667 Msa0126380:intron 35.0%
CTCATGATAGTTATTGGCAT+CGG - chr1_3:55469874-55469893 None:intergenic 35.0%
TCTCACCTCATGATAGTTAT+TGG - chr1_3:55469880-55469899 None:intergenic 35.0%
GAAAAACTACCTTGTCACAT+CGG + chr1_3:55469901-55469920 Msa0126380:intron 35.0%
AGGAGATATCGAAAATTGCT+CGG - chr1_3:55469974-55469993 None:intergenic 35.0%
! TTTTAGTGATGAAGCACAGT+TGG - chr1_3:55470030-55470049 None:intergenic 35.0%
CTCACTATAATCTTGACCAT+AGG + chr1_3:55470090-55470109 Msa0126380:intron 35.0%
AATGTTTAGATAGACACTGG+TGG - chr1_3:55470163-55470182 None:intergenic 35.0%
TAATCCATGACTGATGAGAT+GGG - chr1_3:55470191-55470210 None:intergenic 35.0%
ATAATCCATGACTGATGAGA+TGG - chr1_3:55470192-55470211 None:intergenic 35.0%
! TGTGTTTCAGCTCATGTTTT+AGG - chr1_3:55470422-55470441 None:intergenic 35.0%
AAAACATGAGCTGAAACACA+TGG + chr1_3:55470422-55470441 Msa0126380:intron 35.0%
!! TTGGTGTCACTTATGAATGA+CGG - chr1_3:55470454-55470473 None:intergenic 35.0%
TGACACCAAACCTATTCAAA+GGG + chr1_3:55470465-55470484 Msa0126380:intron 35.0%
TATACAGTACCATGATTGAG+GGG - chr1_3:55470584-55470603 None:intergenic 35.0%
CTATACAGTACCATGATTGA+GGG - chr1_3:55470585-55470604 None:intergenic 35.0%
TGCTCAAGGTTTAACACAAA+TGG - chr1_3:55470651-55470670 None:intergenic 35.0%
CTTGTACGATCTTGAGAATA+TGG + chr1_3:55470972-55470991 Msa0126380:CDS 35.0%
GATCTTGAGAATATGGCTAT+TGG + chr1_3:55470979-55470998 Msa0126380:CDS 35.0%
TTGAGAATATGGCTATTGGA+TGG + chr1_3:55470983-55471002 Msa0126380:CDS 35.0%
! CTGTTTCCTACTTTGTTGTA+TGG + chr1_3:55471046-55471065 Msa0126380:intron 35.0%
! TGAAGTTGGTTCAAATGAAG+AGG - chr1_3:55471147-55471166 None:intergenic 35.0%
ACTGGAATAGTACATACAGT+GGG + chr1_3:55471459-55471478 Msa0126380:CDS 35.0%
GAAATTTGAGTCCACTGAGT+GGG + chr1_3:55460929-55460948 Msa0126380:five_prime_UTR 40.0%
!! CTTCACGATAAAGCTGGTTT+TGG - chr1_3:55460986-55461005 None:intergenic 40.0%
CAGTAGAGTGAATGAATGAG+TGG - chr1_3:55461141-55461160 None:intergenic 40.0%
GATGTGAAATGTGAGTATGG+AGG - chr1_3:55461215-55461234 None:intergenic 40.0%
!! TCCGTTGATTTCAATCTTGG+TGG + chr1_3:55461482-55461501 Msa0126380:CDS 40.0%
AATGGTCTTCCTACTAGAAC+TGG + chr1_3:55461506-55461525 Msa0126380:CDS 40.0%
ATGGTCTTCCTACTAGAACT+GGG + chr1_3:55461507-55461526 Msa0126380:CDS 40.0%
ATGCTGCATGATCTACTCAT+CGG - chr1_3:55461709-55461728 None:intergenic 40.0%
AACTTCACTCCGTGTATGTT+TGG - chr1_3:55461939-55461958 None:intergenic 40.0%
! GAGTGAAGTTTGAAGTGAAG+AGG + chr1_3:55461949-55461968 Msa0126380:intron 40.0%
! GTTTGAAGTGAAGAGGAAGA+TGG + chr1_3:55461956-55461975 Msa0126380:intron 40.0%
AAGTGAAGAGGAAGATGGAA+AGG + chr1_3:55461961-55461980 Msa0126380:intron 40.0%
TTACCTAGGTAGTAGGGTTT+AGG + chr1_3:55462002-55462021 Msa0126380:intron 40.0%
TACCTAGGTAGTAGGGTTTA+GGG + chr1_3:55462003-55462022 Msa0126380:intron 40.0%
! GCTGATTCAGTAATGAGATG+GGG - chr1_3:55462040-55462059 None:intergenic 40.0%
! AGCGGTGACTTTTTGCATAT+TGG - chr1_3:55462189-55462208 None:intergenic 40.0%
! AAAAGTCACCGCTATTTCAG+TGG + chr1_3:55462196-55462215 Msa0126380:intron 40.0%
GGTTGCATGAGCTAAATCAT+GGG + chr1_3:55462936-55462955 Msa0126380:intron 40.0%
TGGACATAGTAGTCCTTCTT+TGG - chr1_3:55463131-55463150 None:intergenic 40.0%
TGTCCTACGAAAAGCCAAAT+CGG + chr1_3:55463203-55463222 Msa0126380:CDS 40.0%
TTGACTCTCTATGACCCAAA+GGG + chr1_3:55463362-55463381 Msa0126380:CDS 40.0%
CTGAAGTATGAGATCCCTTT+GGG - chr1_3:55463379-55463398 None:intergenic 40.0%
! TCTGAAGTATGAGATCCCTT+TGG - chr1_3:55463380-55463399 None:intergenic 40.0%
TAAGTTATGCTATAGGGGCA+GGG - chr1_3:55463476-55463495 None:intergenic 40.0%
ATAAGTTATGCTATAGGGGC+AGG - chr1_3:55463477-55463496 None:intergenic 40.0%
TGCCCCTATAGCATAACTTA+TGG + chr1_3:55463476-55463495 Msa0126380:CDS 40.0%
CAACTACTGGATACTATGTC+AGG + chr1_3:55463510-55463529 Msa0126380:CDS 40.0%
!! GGGACTATCTTACTTTTGAC+CGG + chr1_3:55463531-55463550 Msa0126380:CDS 40.0%
!! CTTACTTTTGACCGGATCAA+CGG + chr1_3:55463539-55463558 Msa0126380:CDS 40.0%
TATGGAGATTTCCGTTGATC+CGG - chr1_3:55463553-55463572 None:intergenic 40.0%
!! TCTCATGAGTGGGTTATCTT+CGG + chr1_3:55463731-55463750 Msa0126380:intron 40.0%
ACTTAAACTCGCCACTTGAA+TGG - chr1_3:55463817-55463836 None:intergenic 40.0%
ATTCAAGTGGCGAGTTTAAG+TGG + chr1_3:55463816-55463835 Msa0126380:intron 40.0%
TTCAAGTGGCGAGTTTAAGT+GGG + chr1_3:55463817-55463836 Msa0126380:intron 40.0%
TATTCCATCAAGGGCTTCTT+CGG - chr1_3:55463999-55464018 None:intergenic 40.0%
GAAGCCCTTGATGGAATAAT+TGG + chr1_3:55464001-55464020 Msa0126380:CDS 40.0%
! GTGGTGGAATATTTGCCATA+GGG + chr1_3:55464116-55464135 Msa0126380:CDS 40.0%
TGGTGGAATATTTGCCATAG+GGG + chr1_3:55464117-55464136 Msa0126380:CDS 40.0%
GTTGTTGTCACATGACTGAA+CGG + chr1_3:55464446-55464465 Msa0126380:intron 40.0%
TTACACAAGAGGCTGTTTAC+AGG - chr1_3:55464486-55464505 None:intergenic 40.0%
GCTGCATACAATACACCAAT+TGG + chr1_3:55464519-55464538 Msa0126380:intron 40.0%
GCATACAATACACCAATTGG+TGG + chr1_3:55464522-55464541 Msa0126380:intron 40.0%
!!! CGGGCTGCCATTTTTTTTAT+TGG + chr1_3:55464586-55464605 Msa0126380:intron 40.0%
TCTTTGATGGGAATCCTCAT+AGG + chr1_3:55464622-55464641 Msa0126380:intron 40.0%
CTAACTAGCAATCTTAGCCA+AGG - chr1_3:55464664-55464683 None:intergenic 40.0%
CTTGGCTAAGATTGCTAGTT+AGG + chr1_3:55464662-55464681 Msa0126380:intron 40.0%
AGCTTTACCTGCAATGTCAA+GGG - chr1_3:55464725-55464744 None:intergenic 40.0%
AAGCTTTACCTGCAATGTCA+AGG - chr1_3:55464726-55464745 None:intergenic 40.0%
ATAGTGCAGCATTTAAGCCA+CGG + chr1_3:55464883-55464902 Msa0126380:intron 40.0%
AATATACCATCCATGGCTTC+GGG - chr1_3:55464909-55464928 None:intergenic 40.0%
GACACGTGAAAGAGATTTAG+TGG + chr1_3:55464948-55464967 Msa0126380:intron 40.0%
AATATACCTCCAACTCCTTG+GGG - chr1_3:55465097-55465116 None:intergenic 40.0%
GAATATACCTCCAACTCCTT+GGG - chr1_3:55465098-55465117 None:intergenic 40.0%
! GTTCCTCTTTCCCTCATTTT+TGG - chr1_3:55465120-55465139 None:intergenic 40.0%
AACACATGGAGTAGACTTAG+TGG + chr1_3:55465137-55465156 Msa0126380:intron 40.0%
ACACATGGAGTAGACTTAGT+GGG + chr1_3:55465138-55465157 Msa0126380:intron 40.0%
TTCCTCCATATTCATGTCTC+TGG - chr1_3:55465235-55465254 None:intergenic 40.0%
AGAGACATGAATATGGAGGA+AGG + chr1_3:55465234-55465253 Msa0126380:intron 40.0%
ACATGAATATGGAGGAAGGA+AGG + chr1_3:55465238-55465257 Msa0126380:intron 40.0%
TTGTTTATGGGTATATGCGC+TGG + chr1_3:55465268-55465287 Msa0126380:intron 40.0%
TGTTTATGGGTATATGCGCT+GGG + chr1_3:55465269-55465288 Msa0126380:intron 40.0%
ATGCCAAAGAAGATGCGAAA+GGG - chr1_3:55465424-55465443 None:intergenic 40.0%
AATGCCAAAGAAGATGCGAA+AGG - chr1_3:55465425-55465444 None:intergenic 40.0%
TATATGCATGATAGCTCCGT+TGG + chr1_3:55465861-55465880 Msa0126380:intron 40.0%
CAATAGTCAACAACAGACTG+CGG - chr1_3:55466034-55466053 None:intergenic 40.0%
TTGTAGGGCACATTACAATG+TGG + chr1_3:55466051-55466070 Msa0126380:intron 40.0%
CCCTCGGATATATTTGATTC+TGG + chr1_3:55466115-55466134 Msa0126380:CDS 40.0%
!! GATTGATAGTGGAACAACCT+TGG + chr1_3:55466156-55466175 Msa0126380:CDS 40.0%
TATGACAGGAAGATAAGCCA+AGG - chr1_3:55466176-55466195 None:intergenic 40.0%
AGTTGGTCATAGACTATGAC+AGG - chr1_3:55466190-55466209 None:intergenic 40.0%
ATGTTGTCACCATACCCAAT+AGG - chr1_3:55466557-55466576 None:intergenic 40.0%
!!! TCCAATATTTTGAAGCCTGC+TGG + chr1_3:55466640-55466659 Msa0126380:intron 40.0%
TCCAGCAGGCTTCAAAATAT+TGG - chr1_3:55466644-55466663 None:intergenic 40.0%
!!! AATATTTTGAAGCCTGCTGG+AGG + chr1_3:55466643-55466662 Msa0126380:intron 40.0%
! ACTAATCTTTTTCCTCCAGC+AGG - chr1_3:55466658-55466677 None:intergenic 40.0%
GACATATGACAGTAGCAAGT+AGG + chr1_3:55466694-55466713 Msa0126380:intron 40.0%
TCAACACTGCAAGGTTACAA+CGG - chr1_3:55467208-55467227 None:intergenic 40.0%
! TTGTAACCTTGCAGTGTTGA+TGG + chr1_3:55467208-55467227 Msa0126380:intron 40.0%
CAGCCTAGAGGACAAAATTA+AGG - chr1_3:55467711-55467730 None:intergenic 40.0%
! CTTAATTTTGTCCTCTAGGC+TGG + chr1_3:55467709-55467728 Msa0126380:intron 40.0%
! TTTTCTGCCAGCCAATACAT+CGG - chr1_3:55467738-55467757 None:intergenic 40.0%
! GAAAAGTGTGACCCAAACTA+AGG + chr1_3:55467753-55467772 Msa0126380:CDS 40.0%
GTCCTTTCCATCCTTAGTTT+GGG - chr1_3:55467767-55467786 None:intergenic 40.0%
TGTCCTTTCCATCCTTAGTT+TGG - chr1_3:55467768-55467787 None:intergenic 40.0%
! TCAACTTGGTATCTAGAGCA+AGG + chr1_3:55467997-55468016 Msa0126380:intron 40.0%
!!! TCGCCTTCTCCTATTTTTGT+TGG + chr1_3:55468309-55468328 Msa0126380:intron 40.0%
!!! CGCCTTCTCCTATTTTTGTT+GGG + chr1_3:55468310-55468329 Msa0126380:intron 40.0%
GTCCCAACAAAAATAGGAGA+AGG - chr1_3:55468315-55468334 None:intergenic 40.0%
GATCACAAACGTTCCAACAA+CGG - chr1_3:55468528-55468547 None:intergenic 40.0%
TGGCTGGAGATGAAATGTAT+TGG - chr1_3:55468592-55468611 None:intergenic 40.0%
TGGGATCATGGAATTTAGAC+TGG + chr1_3:55468657-55468676 Msa0126380:intron 40.0%
TGGAATTTAGACTGGTGCTT+CGG + chr1_3:55468665-55468684 Msa0126380:intron 40.0%
CCCTCTCTTTATCTCTAACT+TGG + chr1_3:55468705-55468724 Msa0126380:intron 40.0%
GCCAAGTTAGAGATAAAGAG+AGG - chr1_3:55468709-55468728 None:intergenic 40.0%
! AATACCAGTAACTTGTGCCT+TGG - chr1_3:55468773-55468792 None:intergenic 40.0%
AAGGCACAAGTTACTGGTAT+TGG + chr1_3:55468772-55468791 Msa0126380:intron 40.0%
ATCGTCACCAAATCTTTGTG+GGG - chr1_3:55468961-55468980 None:intergenic 40.0%
! GGTTATTGTCTTTTCATGGG+TGG - chr1_3:55469297-55469316 None:intergenic 40.0%
TTAGTGGAAGAGTAGTAAGC+AGG - chr1_3:55469265-55469284 None:intergenic 40.0%
! GGTTATTGTCTTTTCATGGG+TGG - chr1_3:55469297-55469316 None:intergenic 40.0%
CCAATTGAACAGTAGCTTTC+AGG - chr1_3:55469543-55469562 None:intergenic 40.0%
CCTGAAAGCTACTGTTCAAT+TGG + chr1_3:55469540-55469559 Msa0126380:intron 40.0%
TAGGCCCCAAATTTCTACAA+AGG - chr1_3:55469631-55469650 None:intergenic 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG - chr1_3:55469650-55469669 None:intergenic 40.0%
AGAGTCCTATCTAACCAATG+TGG + chr1_3:55469713-55469732 Msa0126380:intron 40.0%
GAGTCCTATCTAACCAATGT+GGG + chr1_3:55469714-55469733 Msa0126380:intron 40.0%
! TAGTCCCACATTGGTTAGAT+AGG - chr1_3:55469721-55469740 None:intergenic 40.0%
AAAGCCAACACAAGGCAATT+AGG + chr1_3:55469754-55469773 Msa0126380:intron 40.0%
AAGCCAACACAAGGCAATTA+GGG + chr1_3:55469755-55469774 Msa0126380:intron 40.0%
CGATGCCAATAACTATCATG+AGG + chr1_3:55469872-55469891 Msa0126380:intron 40.0%
TGAACTATCTCACTGTGATC+AGG - chr1_3:55469946-55469965 None:intergenic 40.0%
TGGATTATCTCCACACTGAA+TGG + chr1_3:55470204-55470223 Msa0126380:intron 40.0%
GGATTATCTCCACACTGAAT+GGG + chr1_3:55470205-55470224 Msa0126380:intron 40.0%
CTCGATTCATAACATAGCTC+AGG - chr1_3:55470237-55470256 None:intergenic 40.0%
GTAAAATCAGCAGACGATGA+TGG + chr1_3:55470374-55470393 Msa0126380:intron 40.0%
GTGACACCAAACCTATTCAA+AGG + chr1_3:55470464-55470483 Msa0126380:intron 40.0%
GACACCAAACCTATTCAAAG+GGG + chr1_3:55470466-55470485 Msa0126380:intron 40.0%
ATACAGTACCATGATTGAGG+GGG - chr1_3:55470583-55470602 None:intergenic 40.0%
GCTATACAGTACCATGATTG+AGG - chr1_3:55470586-55470605 None:intergenic 40.0%
GAAAAAAACGCTTGTGAGAC+GGG - chr1_3:55470708-55470727 None:intergenic 40.0%
GGAAAAAAACGCTTGTGAGA+CGG - chr1_3:55470709-55470728 None:intergenic 40.0%
GAGAGAGAAAATGAGGATCA+AGG - chr1_3:55470829-55470848 None:intergenic 40.0%
TCAAACTGGAGTAGGTATAG+AGG - chr1_3:55471178-55471197 None:intergenic 40.0%
ATAACAGATGAGGCTTCGTT+TGG - chr1_3:55471288-55471307 None:intergenic 40.0%
AAACGAAGCCTCATCTGTTA+TGG + chr1_3:55471287-55471306 Msa0126380:intron 40.0%
CTCTTCCAGCATTAAAGTGA+AGG + chr1_3:55471428-55471447 Msa0126380:CDS 40.0%
TGCATCCTTCACTTTAATGC+TGG - chr1_3:55471436-55471455 None:intergenic 40.0%
GACTGGAATAGTACATACAG+TGG + chr1_3:55471458-55471477 Msa0126380:CDS 40.0%
ACTGCACACCTTATCATTCA+AGG - chr1_3:55471629-55471648 None:intergenic 40.0%
CGAAATTTGAGTCCACTGAG+TGG + chr1_3:55460928-55460947 Msa0126380:five_prime_UTR 45.0%
CAAGCTTAACCGACTAAGAG+AGG - chr1_3:55461179-55461198 None:intergenic 45.0%
CGTCGGAAAACGAGTTTAAG+TGG + chr1_3:55461416-55461435 Msa0126380:CDS 45.0%
GAGAGGTTACCTAGGTAGTA+GGG + chr1_3:55461996-55462015 Msa0126380:intron 45.0%
ACCTAGGTAGTAGGGTTTAG+GGG + chr1_3:55462004-55462023 Msa0126380:intron 45.0%
! TCACCGCTATTTCAGTGGTA+TGG + chr1_3:55462201-55462220 Msa0126380:intron 45.0%
!!! CAGCATATTGGCTTTTGTCG+TGG + chr1_3:55462232-55462251 Msa0126380:intron 45.0%
TAGGGGACTAAGACTGTGTT+CGG + chr1_3:55462642-55462661 Msa0126380:intron 45.0%
!! GCTGTTTTCATAAGCTGTCC+TGG + chr1_3:55462765-55462784 Msa0126380:intron 45.0%
AAGCTGTCCTGGAGAGATTA+TGG + chr1_3:55462776-55462795 Msa0126380:intron 45.0%
GGGTTGCATGAGCTAAATCA+TGG + chr1_3:55462935-55462954 Msa0126380:intron 45.0%
!!! ACACCGATTTGGCTTTTCGT+AGG - chr1_3:55463209-55463228 None:intergenic 45.0%
CTTGACTCTCTATGACCCAA+AGG + chr1_3:55463361-55463380 Msa0126380:CDS 45.0%
AGGAATCGGACCATCATATG+TGG - chr1_3:55463435-55463454 None:intergenic 45.0%
ACATATGATGGTCCGATTCC+TGG + chr1_3:55463434-55463453 Msa0126380:CDS 45.0%
ACCCACAGAGATGCAAAAGA+GGG - chr1_3:55463922-55463941 None:intergenic 45.0%
GCTGTACAATCTGGCACATT+GGG + chr1_3:55463965-55463984 Msa0126380:CDS 45.0%
CACTGCCTTGACAATATTCG+TGG + chr1_3:55464094-55464113 Msa0126380:CDS 45.0%
TGCCTTGACAATATTCGTGG+TGG + chr1_3:55464097-55464116 Msa0126380:CDS 45.0%
CACCACCACGAATATTGTCA+AGG - chr1_3:55464102-55464121 None:intergenic 45.0%
CTTGACAATATTCGTGGTGG+TGG + chr1_3:55464100-55464119 Msa0126380:CDS 45.0%
!! GGTGGTGGAATATTTGCCAT+AGG + chr1_3:55464115-55464134 Msa0126380:CDS 45.0%
ATTTGCCATAGGGGAATTGG+TGG + chr1_3:55464126-55464145 Msa0126380:CDS 45.0%
GATGGGAATCCTCATAGGTA+TGG + chr1_3:55464627-55464646 Msa0126380:intron 45.0%
AACTTGCAGCCATACCTATG+AGG - chr1_3:55464639-55464658 None:intergenic 45.0%
GTATGGCTGCAAGTTAACCT+TGG + chr1_3:55464644-55464663 Msa0126380:intron 45.0%
TTAGGTAAAGCCGTCTTCAG+AGG + chr1_3:55464680-55464699 Msa0126380:intron 45.0%
! TAGAACTACGCCTCTGAAGA+CGG - chr1_3:55464693-55464712 None:intergenic 45.0%
! TCTTCAGAGGCGTAGTTCTA+GGG + chr1_3:55464693-55464712 Msa0126380:intron 45.0%
GTTCATACCCTTGACATTGC+AGG + chr1_3:55464715-55464734 Msa0126380:intron 45.0%
AATGAAAGGTGACCAGACTC+AGG + chr1_3:55465019-55465038 Msa0126380:intron 45.0%
GGAATATACCTCCAACTCCT+TGG - chr1_3:55465099-55465118 None:intergenic 45.0%
ATGAGGGAAAGAGGAACACA+TGG + chr1_3:55465123-55465142 Msa0126380:intron 45.0%
GTGGGAGAGACAATGTTAAG+TGG + chr1_3:55465156-55465175 Msa0126380:intron 45.0%
GAAAGGAGGTGGTTATGAAG+AGG + chr1_3:55465209-55465228 Msa0126380:intron 45.0%
AGAGGCCAGAGACATGAATA+TGG + chr1_3:55465227-55465246 Msa0126380:intron 45.0%
ACTCCCTTTCGCATCTTCTT+TGG + chr1_3:55465418-55465437 Msa0126380:intron 45.0%
GTGTGTGTGTGTGTGTATTG+AGG - chr1_3:55465488-55465507 None:intergenic 45.0%
GAAGGGCAATTAAGTCCCAT+AGG + chr1_3:55465901-55465920 Msa0126380:intron 45.0%
TGATGTTCTACAGCTTCCCT+CGG + chr1_3:55466099-55466118 Msa0126380:CDS 45.0%
! AAGGGCACAGTGATTGATAG+TGG + chr1_3:55466145-55466164 Msa0126380:CDS 45.0%
ATGGCGTACTTTCCAGCATA+CGG - chr1_3:55466355-55466374 None:intergenic 45.0%
CAGAGAATCAAGTGCACTTG+TGG - chr1_3:55467156-55467175 None:intergenic 45.0%
CACAAGTGCACTTGATTCTC+TGG + chr1_3:55467154-55467173 Msa0126380:intron 45.0%
GCACTTGATTCTCTGGCATA+TGG + chr1_3:55467161-55467180 Msa0126380:intron 45.0%
!! TAACCTTGCAGTGTTGATGG+TGG + chr1_3:55467211-55467230 Msa0126380:intron 45.0%
AATCCACCATCAACACTGCA+AGG - chr1_3:55467217-55467236 None:intergenic 45.0%
AGTGTGACCCAAACTAAGGA+TGG + chr1_3:55467757-55467776 Msa0126380:CDS 45.0%
GACCCAAACTAAGGATGGAA+AGG + chr1_3:55467762-55467781 Msa0126380:CDS 45.0%
GGAAAGGACATGACACTTCT+TGG + chr1_3:55467778-55467797 Msa0126380:CDS 45.0%
AAGGACATGACACTTCTTGG+AGG + chr1_3:55467781-55467800 Msa0126380:CDS 45.0%
TCACGTGCCAAAAAGACGTT+CGG - chr1_3:55468236-55468255 None:intergenic 45.0%
CCAAAACACGTGTCAAACGT+GGG - chr1_3:55468356-55468375 None:intergenic 45.0%
TCCAAAACACGTGTCAAACG+TGG - chr1_3:55468357-55468376 None:intergenic 45.0%
!! ACGTTTGACACGTGTTTTGG+AGG + chr1_3:55468356-55468375 Msa0126380:intron 45.0%
TCACTGTGAATGTTGTCCTG+AGG + chr1_3:55468395-55468414 Msa0126380:intron 45.0%
! GCTCATTGCTGCAGTGTTTT+TGG + chr1_3:55468417-55468436 Msa0126380:intron 45.0%
TATCGCATCACAAGGTCTAC+TGG + chr1_3:55468454-55468473 Msa0126380:intron 45.0%
CATTTCATCTCCAGCCACTT+TGG + chr1_3:55468595-55468614 Msa0126380:intron 45.0%
CACAACATCACCCTTGCTAA+TGG + chr1_3:55468745-55468764 Msa0126380:intron 45.0%
TGCCTTGGAACCATTAGCAA+GGG - chr1_3:55468758-55468777 None:intergenic 45.0%
GAGAGAGCGAGTAAGTTTAC+TGG - chr1_3:55468875-55468894 None:intergenic 45.0%
TTGAGGACCCCACAAAGATT+TGG + chr1_3:55468951-55468970 Msa0126380:intron 45.0%
! GAAAGATTGGACTGGACGAA+AGG + chr1_3:55469088-55469107 Msa0126380:intron 45.0%
CGACCACAAAAGCTCACATA+TGG + chr1_3:55469188-55469207 Msa0126380:intron 45.0%
! ACGCCATATGTGAGCTTTTG+TGG - chr1_3:55469194-55469213 None:intergenic 45.0%
AAAGGCTGAATACCGGGTTA+TGG - chr1_3:55469220-55469239 None:intergenic 45.0%
GAGTACAAAGGCTGAATACC+GGG - chr1_3:55469226-55469245 None:intergenic 45.0%
CGAGTACAAAGGCTGAATAC+CGG - chr1_3:55469227-55469246 None:intergenic 45.0%
CGGTATTCAGCCTTTGTACT+CGG + chr1_3:55469225-55469244 Msa0126380:intron 45.0%
CCAATTGAGCAGTAGCTTTC+AGG - chr1_3:55469335-55469354 None:intergenic 45.0%
CCTGAAAGCTACTGCTCAAT+TGG + chr1_3:55469332-55469351 Msa0126380:intron 45.0%
AAAGGCTGAATACCGGGTTA+TGG - chr1_3:55469220-55469239 None:intergenic 45.0%
GAGTACAAAGGCTGAATACC+GGG - chr1_3:55469226-55469245 None:intergenic 45.0%
CGAGTACAAAGGCTGAATAC+CGG - chr1_3:55469227-55469246 None:intergenic 45.0%
CGGTATTCAGCCTTTGTACT+CGG + chr1_3:55469225-55469244 Msa0126380:intron 45.0%
TAATACACGGCCGAGTACAA+AGG - chr1_3:55469443-55469462 None:intergenic 45.0%
CAGTAGCTTTCAGGCATAGA+CGG - chr1_3:55469534-55469553 None:intergenic 45.0%
CTACAAAGGATCACCTCGAA+AGG - chr1_3:55469617-55469636 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG - chr1_3:55469660-55469679 None:intergenic 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG + chr1_3:55469657-55469676 Msa0126380:intron 45.0%
!! TTGCCTTGTGTTGGCTTTGA+GGG - chr1_3:55469752-55469771 None:intergenic 45.0%
!! ATTGCCTTGTGTTGGCTTTG+AGG - chr1_3:55469753-55469772 None:intergenic 45.0%
AGCCAACACAAGGCAATTAG+GGG + chr1_3:55469756-55469775 Msa0126380:intron 45.0%
TTAGGGGCAGATCGCAATAA+AGG + chr1_3:55469772-55469791 Msa0126380:intron 45.0%
CGTATTATGCCGATGTGACA+AGG - chr1_3:55469913-55469932 None:intergenic 45.0%
TCGGCATAATACGACACATC+TGG + chr1_3:55469920-55469939 Msa0126380:intron 45.0%
! TGTTTTGCATGGCGAGTTAG+AGG - chr1_3:55469994-55470013 None:intergenic 45.0%
AACACCCATCTCATCAGTCA+TGG + chr1_3:55470184-55470203 Msa0126380:intron 45.0%
!! AGGAAGTATCCCATTCAGTG+TGG - chr1_3:55470217-55470236 None:intergenic 45.0%
!! ACGATGATGGAGCCAGATTA+GGG + chr1_3:55470387-55470406 Msa0126380:intron 45.0%
GTCACTTATGAATGACGGTG+TGG - chr1_3:55470449-55470468 None:intergenic 45.0%
ACCAAACCTATTCAAAGGGG+AGG + chr1_3:55470469-55470488 Msa0126380:intron 45.0%
TCCTCCCCTTTGAATAGGTT+TGG - chr1_3:55470473-55470492 None:intergenic 45.0%
GAATCTCCTCCCCTTTGAAT+AGG - chr1_3:55470478-55470497 None:intergenic 45.0%
ATTCAAAGGGGAGGAGATTC+TGG + chr1_3:55470478-55470497 Msa0126380:intron 45.0%
TACAGTACCATGATTGAGGG+GGG - chr1_3:55470582-55470601 None:intergenic 45.0%
CATCAGAGAGAGAATGCTCA+AGG - chr1_3:55470665-55470684 None:intergenic 45.0%
TAGAGGAGGAATGGTGAAGT+TGG - chr1_3:55471161-55471180 None:intergenic 45.0%
GAGTAGGTATAGAGGAGGAA+TGG - chr1_3:55471170-55471189 None:intergenic 45.0%
AACTGGAGTAGGTATAGAGG+AGG - chr1_3:55471175-55471194 None:intergenic 45.0%
AAAGTGAAGGATGCAACGAC+TGG + chr1_3:55471441-55471460 Msa0126380:CDS 45.0%
GAATGATAAGGTGTGCAGTG+TGG + chr1_3:55471630-55471649 Msa0126380:three_prime_UTR 45.0%
!! AAAATACAAAAATTAAATAA+GGG - chr1_3:55463313-55463332 None:intergenic 5.0%
CATCACGATCATCTTCGTCG+TGG + chr1_3:55461446-55461465 Msa0126380:CDS 50.0%
! GAGACTCACCCAGTTCTAGT+AGG - chr1_3:55461518-55461537 None:intergenic 50.0%
AAAGGCAGTTTAGCCACGAG+AGG + chr1_3:55461979-55461998 Msa0126380:intron 50.0%
TTAGCCACGAGAGGTTACCT+AGG + chr1_3:55461988-55462007 Msa0126380:intron 50.0%
ACTACCTAGGTAACCTCTCG+TGG - chr1_3:55461995-55462014 None:intergenic 50.0%
CGAGAGGTTACCTAGGTAGT+AGG + chr1_3:55461995-55462014 Msa0126380:intron 50.0%
ACCCCTAAACCCTACTACCT+AGG - chr1_3:55462008-55462027 None:intergenic 50.0%
TGGTCCGATTCCTGGTTGTA+AGG + chr1_3:55463442-55463461 Msa0126380:CDS 50.0%
TCCGATTCCTGGTTGTAAGG+CGG + chr1_3:55463445-55463464 Msa0126380:CDS 50.0%
TCCGCCTTACAACCAGGAAT+CGG - chr1_3:55463449-55463468 None:intergenic 50.0%
! GGAGATGGAAGTGCAACTAC+TGG + chr1_3:55463497-55463516 Msa0126380:CDS 50.0%
!!! TGCTATTTTGCGGTGCGGTA+TGG - chr1_3:55463571-55463590 None:intergenic 50.0%
!!! GATGCTGCTATTTTGCGGTG+CGG - chr1_3:55463576-55463595 None:intergenic 50.0%
! TCCCCTCTTTTGCATCTCTG+TGG + chr1_3:55463917-55463936 Msa0126380:intron 50.0%
CCCACAGAGATGCAAAAGAG+GGG - chr1_3:55463921-55463940 None:intergenic 50.0%
! CCCCTCTTTTGCATCTCTGT+GGG + chr1_3:55463918-55463937 Msa0126380:intron 50.0%
GACCCACAGAGATGCAAAAG+AGG - chr1_3:55463923-55463942 None:intergenic 50.0%
CGCTGTACAATCTGGCACAT+TGG + chr1_3:55463964-55463983 Msa0126380:CDS 50.0%
TCTTCCGAAGAAGCCCTTGA+TGG + chr1_3:55463992-55464011 Msa0126380:CDS 50.0%
!! ACAGCTTGCTGCATCTCGAA+AGG + chr1_3:55464054-55464073 Msa0126380:CDS 50.0%
TGGTTCCACCAATTCCCCTA+TGG - chr1_3:55464134-55464153 None:intergenic 50.0%
GTGTCAACAAGCTTTGCCCT+TGG - chr1_3:55464247-55464266 None:intergenic 50.0%
ACAACTTTACCGTTGCGCCA+AGG - chr1_3:55464431-55464450 None:intergenic 50.0%
GTCACATGACTGAACGGTCA+CGG + chr1_3:55464452-55464471 Msa0126380:intron 50.0%
CTAAAGCTCTCGCATACGCA+GGG - chr1_3:55464561-55464580 None:intergenic 50.0%
ACTAAAGCTCTCGCATACGC+AGG - chr1_3:55464562-55464581 None:intergenic 50.0%
! ATGCGAGAGCTTTAGTGCAC+CGG + chr1_3:55464566-55464585 Msa0126380:intron 50.0%
! GTCTTCAGAGGCGTAGTTCT+AGG + chr1_3:55464692-55464711 Msa0126380:intron 50.0%
CTGTATTGAGCTCCTGAGTC+TGG - chr1_3:55465034-55465053 None:intergenic 50.0%
GGCCAGAGACATGAATATGG+AGG + chr1_3:55465230-55465249 Msa0126380:intron 50.0%
ATGGGTATATGCGCTGGGTT+TGG + chr1_3:55465274-55465293 Msa0126380:intron 50.0%
TGGGTATATGCGCTGGGTTT+GGG + chr1_3:55465275-55465294 Msa0126380:intron 50.0%
TGTCACACCCTTGTTGGATC+TGG + chr1_3:55465762-55465781 Msa0126380:intron 50.0%
AAGCGCACCAGATCCAACAA+GGG - chr1_3:55465772-55465791 None:intergenic 50.0%
TAAGCGCACCAGATCCAACA+AGG - chr1_3:55465773-55465792 None:intergenic 50.0%
ACACAAAACACCTGGGACCT+GGG - chr1_3:55467451-55467470 None:intergenic 50.0%
TAGGCTGGTGTCCGATGTAT+TGG + chr1_3:55467724-55467743 Msa0126380:intron 50.0%
TGCGCGTTCAGTCTTCGTTA+AGG + chr1_3:55468043-55468062 Msa0126380:intron 50.0%
!! GGTATCTCAGTTGGTGATGG+CGG - chr1_3:55468128-55468147 None:intergenic 50.0%
!! TGAAAGGGTGTTCAACGGCA+GGG - chr1_3:55468199-55468218 None:intergenic 50.0%
!! ATGAAAGGGTGTTCAACGGC+AGG - chr1_3:55468200-55468219 None:intergenic 50.0%
!! GCGCATGAAAGGGTGTTCAA+CGG - chr1_3:55468204-55468223 None:intergenic 50.0%
AAAAGACGTTCGGAGTGTGG+AGG - chr1_3:55468226-55468245 None:intergenic 50.0%
CCAAAAAGACGTTCGGAGTG+TGG - chr1_3:55468229-55468248 None:intergenic 50.0%
! CCACACTCCGAACGTCTTTT+TGG + chr1_3:55468226-55468245 Msa0126380:intron 50.0%
GTCGCAAATGTACGCTCAGA+AGG - chr1_3:55468270-55468289 None:intergenic 50.0%
TTGGGACAACTTCCAGTGTG+TGG + chr1_3:55468328-55468347 Msa0126380:intron 50.0%
TGGGACAACTTCCAGTGTGT+GGG + chr1_3:55468329-55468348 Msa0126380:intron 50.0%
! CCCACGTTTGACACGTGTTT+TGG + chr1_3:55468353-55468372 Msa0126380:intron 50.0%
GTCACTGGTATCGCATCACA+AGG + chr1_3:55468446-55468465 Msa0126380:intron 50.0%
TGTTGTCGTCACACCGTTGT+TGG + chr1_3:55468512-55468531 Msa0126380:intron 50.0%
CCAAAATGAGCCAAAGTGGC+TGG - chr1_3:55468608-55468627 None:intergenic 50.0%
!! CCAGCCACTTTGGCTCATTT+TGG + chr1_3:55468605-55468624 Msa0126380:intron 50.0%
CACCCTTGCTAATGGTTCCA+AGG + chr1_3:55468753-55468772 Msa0126380:intron 50.0%
GTGCCTTGGAACCATTAGCA+AGG - chr1_3:55468759-55468778 None:intergenic 50.0%
GGTTCCAAGGCACAAGTTAC+TGG + chr1_3:55468766-55468785 Msa0126380:intron 50.0%
! CTGGACGAAAGGTACGAAGT+TGG + chr1_3:55469099-55469118 Msa0126380:intron 50.0%
! ACGAAAGGTACGAAGTTGGC+TGG + chr1_3:55469103-55469122 Msa0126380:intron 50.0%
ATATGGCGTGAGCCATAACC+CGG + chr1_3:55469205-55469224 Msa0126380:intron 50.0%
CAATACACGGCCGAGTACAA+AGG - chr1_3:55469238-55469257 None:intergenic 50.0%
GAGCAGTAGCTTTCAGGCAA+CGG - chr1_3:55469329-55469348 None:intergenic 50.0%
AGGAGCTCGTTTACACCGAT+GGG - chr1_3:55469389-55469408 None:intergenic 50.0%
AAGGAGCTCGTTTACACCGA+TGG - chr1_3:55469390-55469409 None:intergenic 50.0%
GTGTAAACGAGCTCCTTTCG+AGG + chr1_3:55469393-55469412 Msa0126380:intron 50.0%
AGGAGCTCGTTTACACCGAT+AGG - chr1_3:55469389-55469408 None:intergenic 50.0%
GTGTAAACGAGCTCCTTTCG+AGG + chr1_3:55469393-55469412 Msa0126380:intron 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG + chr1_3:55469662-55469681 Msa0126380:intron 50.0%
! GGGTGGATTTAGTCCCACAT+TGG - chr1_3:55469730-55469749 None:intergenic 50.0%
!! TGCCTTGTGTTGGCTTTGAG+GGG - chr1_3:55469751-55469770 None:intergenic 50.0%
TGCCCCTAATTGCCTTGTGT+TGG - chr1_3:55469761-55469780 None:intergenic 50.0%
GGGCAGATCGCAATAAAGGT+GGG + chr1_3:55469776-55469795 Msa0126380:intron 50.0%
! AAGGGGGTATACACAGCCTA+TGG - chr1_3:55470109-55470128 None:intergenic 50.0%
CTGTGTATACCCCCTTGCTT+TGG + chr1_3:55470113-55470132 Msa0126380:intron 50.0%
TGTATACCCCCTTGCTTTGG+CGG + chr1_3:55470116-55470135 Msa0126380:intron 50.0%
TTGAAAGCCCGCCAAAGCAA+GGG - chr1_3:55470127-55470146 None:intergenic 50.0%
ATTGAAAGCCCGCCAAAGCA+AGG - chr1_3:55470128-55470147 None:intergenic 50.0%
!! TGCTTTGGCGGGCTTTCAAT+CGG + chr1_3:55470128-55470147 Msa0126380:intron 50.0%
GTGGGAGATAATCGACAGCA+TGG + chr1_3:55470290-55470309 Msa0126380:intron 50.0%
!! GACGATGATGGAGCCAGATT+AGG + chr1_3:55470386-55470405 Msa0126380:intron 50.0%
!! CGATGATGGAGCCAGATTAG+GGG + chr1_3:55470388-55470407 Msa0126380:intron 50.0%
! ACCATGATTGAGGGGGGTAT+GGG - chr1_3:55470576-55470595 None:intergenic 50.0%
TACCATGATTGAGGGGGGTA+TGG - chr1_3:55470577-55470596 None:intergenic 50.0%
GATGGCTGCCATAACAGATG+AGG - chr1_3:55471298-55471317 None:intergenic 50.0%
! GGTGTGCAGTGTGGTTGATA+TGG + chr1_3:55471639-55471658 Msa0126380:three_prime_UTR 50.0%
!!! TGCTGCTTTTGCCCACTCAG+TGG - chr1_3:55460943-55460962 None:intergenic 55.0%
! TGGTGTTTCAGGTGCAGCGT+CGG + chr1_3:55461399-55461418 Msa0126380:CDS 55.0%
! TGGGCTTGGCTCTCCAAAGA+AGG + chr1_3:55463115-55463134 Msa0126380:CDS 55.0%
GGTGTTTCCGCCTTACAACC+AGG - chr1_3:55463455-55463474 None:intergenic 55.0%
! TCTTCGCTTGCTGACAGGTG+TGG + chr1_3:55463941-55463960 Msa0126380:intron 55.0%
AGGTGTGGCGCTGTACAATC+TGG + chr1_3:55463956-55463975 Msa0126380:intron 55.0%
TTTGGGAAGCCTTGGCGCAA+CGG + chr1_3:55464419-55464438 Msa0126380:intron 55.0%
! TGCGAGAGCTTTAGTGCACC+GGG + chr1_3:55464567-55464586 Msa0126380:intron 55.0%
ACCAACCACTGTAGGGCTCT+AGG + chr1_3:55464771-55464790 Msa0126380:intron 55.0%
CCAACCACTGTAGGGCTCTA+GGG + chr1_3:55464772-55464791 Msa0126380:intron 55.0%
AAAGCCCTAGAGCCCTACAG+TGG - chr1_3:55464779-55464798 None:intergenic 55.0%
CTGGAAATCGAGTAGGGCCT+AGG + chr1_3:55464989-55465008 Msa0126380:intron 55.0%
GCAGTTAAGCTATGGCCCCA+AGG + chr1_3:55465079-55465098 Msa0126380:intron 55.0%
AAGCTATGGCCCCAAGGAGT+TGG + chr1_3:55465085-55465104 Msa0126380:intron 55.0%
TATATGCGCTGGGTTTGGGC+AGG + chr1_3:55465279-55465298 Msa0126380:intron 55.0%
ACCTGGGTACAGTTCGGAGA+GGG - chr1_3:55467435-55467454 None:intergenic 55.0%
CACACAAAACACCTGGGACC+TGG - chr1_3:55467452-55467471 None:intergenic 55.0%
TACATCGGACACCAGCCTAG+AGG - chr1_3:55467723-55467742 None:intergenic 55.0%
! CTGGTGTCCGATGTATTGGC+TGG + chr1_3:55467728-55467747 Msa0126380:CDS 55.0%
!! GGCGGTATCTCAGTTGGTGA+TGG - chr1_3:55468131-55468150 None:intergenic 55.0%
!! GGTGATGGCGGTATCTCAGT+TGG - chr1_3:55468137-55468156 None:intergenic 55.0%
!! TGTCCGGTCACAGTTGGTGA+TGG - chr1_3:55468152-55468171 None:intergenic 55.0%
GATGGCAGATCAGCAGTGTC+CGG - chr1_3:55468168-55468187 None:intergenic 55.0%
AACGGCAGGGTTTCAGACGA+TGG - chr1_3:55468186-55468205 None:intergenic 55.0%
! GAGTGTGGAGGCGCATGAAA+GGG - chr1_3:55468214-55468233 None:intergenic 55.0%
ACACTGCAGCAATGAGCCTC+AGG - chr1_3:55468414-55468433 None:intergenic 55.0%
GGTGCTTCGGATCATGTCGT+TGG + chr1_3:55468678-55468697 Msa0126380:intron 55.0%
! TTCAGGCAACGGCTGACTTC+AGG - chr1_3:55469318-55469337 None:intergenic 55.0%
GTTATGGCTCACGCCTCGAA+AGG - chr1_3:55469409-55469428 None:intergenic 55.0%
! AGGCATAGACGGCTGACTTC+AGG - chr1_3:55469523-55469542 None:intergenic 55.0%
GCACTCCTCACCTTACAAGC+CGG - chr1_3:55469670-55469689 None:intergenic 55.0%
!! TTGTGTTGGCTTTGAGGGGG+TGG - chr1_3:55469747-55469766 None:intergenic 55.0%
ACCCCCTCAAAGCCAACACA+AGG + chr1_3:55469746-55469765 Msa0126380:intron 55.0%
!! GCCTTGTGTTGGCTTTGAGG+GGG - chr1_3:55469750-55469769 None:intergenic 55.0%
GGGGCAGATCGCAATAAAGG+TGG + chr1_3:55469775-55469794 Msa0126380:intron 55.0%
GTATACCCCCTTGCTTTGGC+GGG + chr1_3:55470117-55470136 Msa0126380:intron 55.0%
TGAAAGCCCGCCAAAGCAAG+GGG - chr1_3:55470126-55470145 None:intergenic 55.0%
GGGCTTTCAATCGGTCCACA+TGG + chr1_3:55470137-55470156 Msa0126380:intron 55.0%
GATAGACACTGGTGGCCATG+TGG - chr1_3:55470155-55470174 None:intergenic 55.0%
GATGGAGCCAGATTAGGGGT+AGG + chr1_3:55470392-55470411 Msa0126380:intron 55.0%
CAAAGGGGAGGAGATTCTGG+TGG + chr1_3:55470481-55470500 Msa0126380:intron 55.0%
ACCCATACCCCCCTCAATCA+TGG + chr1_3:55470572-55470591 Msa0126380:intron 55.0%
! GTGGGTCTTCGCTTGCTGAC+AGG + chr1_3:55463936-55463955 Msa0126380:intron 60.0%
CTCTCGCATACGCAGGGTCT+GGG - chr1_3:55464555-55464574 None:intergenic 60.0%
CCCTAGAGCCCTACAGTGGT+TGG - chr1_3:55464775-55464794 None:intergenic 60.0%
CTATGGCCCCAAGGAGTTGG+AGG + chr1_3:55465088-55465107 Msa0126380:intron 60.0%
GCTGGGTTTGGGCAGGAAGT+AGG + chr1_3:55465286-55465305 Msa0126380:intron 60.0%
TCCCTCTCCGAACTGTACCC+AGG + chr1_3:55467431-55467450 Msa0126380:intron 60.0%
GACCTGGGTACAGTTCGGAG+AGG - chr1_3:55467436-55467455 None:intergenic 60.0%
CCTGGGACCTGGGTACAGTT+CGG - chr1_3:55467441-55467460 None:intergenic 60.0%
!! CCGGTCACAGTTGGTGATGG+CGG - chr1_3:55468149-55468168 None:intergenic 60.0%
CCGCCATCACCAACTGTGAC+CGG + chr1_3:55468146-55468165 Msa0126380:intron 60.0%
CAGCAGTGTCCGGTCACAGT+TGG - chr1_3:55468158-55468177 None:intergenic 60.0%
! GGAGTGTGGAGGCGCATGAA+AGG - chr1_3:55468215-55468234 None:intergenic 60.0%
GCGACGCTGTTTGTTCCAGC+TGG + chr1_3:55468285-55468304 Msa0126380:intron 60.0%
ATAGGAGAAGGCGAGCCAGC+TGG - chr1_3:55468303-55468322 None:intergenic 60.0%
CAAACGTGGGACCCACACAC+TGG - chr1_3:55468343-55468362 None:intergenic 60.0%
TCGAGGCGTGAGCCATAACC+CGG + chr1_3:55469410-55469429 Msa0126380:intron 60.0%
GAAAGCCCGCCAAAGCAAGG+GGG - chr1_3:55470125-55470144 None:intergenic 60.0%
AGGCGCTCCTACCCCTAATC+TGG - chr1_3:55470402-55470421 None:intergenic 60.0%
CTGGGAGGGGTCCCACCAAT+TGG - chr1_3:55464537-55464556 None:intergenic 65.0%
GCATACGCAGGGTCTGGGAG+GGG - chr1_3:55464550-55464569 None:intergenic 65.0%
CGCATACGCAGGGTCTGGGA+GGG - chr1_3:55464551-55464570 None:intergenic 65.0%
TCGCATACGCAGGGTCTGGG+AGG - chr1_3:55464552-55464571 None:intergenic 65.0%
GCTCTCGCATACGCAGGGTC+TGG - chr1_3:55464556-55464575 None:intergenic 65.0%
TAAGCCACGGCCCGAAGCCA+TGG + chr1_3:55464896-55464915 Msa0126380:intron 65.0%
CCGAACTGTACCCAGGTCCC+AGG + chr1_3:55467438-55467457 Msa0126380:intron 65.0%
CCAACACACCCCCTCACGCT+CGG + chr1_3:55469803-55469822 Msa0126380:intron 65.0%
CAACACACCCCCTCACGCTC+GGG + chr1_3:55469804-55469823 Msa0126380:intron 65.0%
AACACACCCCCTCACGCTCG+GGG + chr1_3:55469805-55469824 Msa0126380:intron 65.0%
AAATCCCGCCCCGAGCGTGA+GGG - chr1_3:55469816-55469835 None:intergenic 65.0%
CCATCCATGGCTTCGGGCCG+TGG - chr1_3:55464903-55464922 None:intergenic 70.0%
CCACGGCCCGAAGCCATGGA+TGG + chr1_3:55464900-55464919 Msa0126380:intron 70.0%
! CCGAGCGTGAGGGGGTGTGT+TGG - chr1_3:55469806-55469825 None:intergenic 70.0%
AATCCCGCCCCGAGCGTGAG+GGG - chr1_3:55469815-55469834 None:intergenic 70.0%
GAAATCCCGCCCCGAGCGTG+AGG - chr1_3:55469817-55469836 None:intergenic 70.0%
ACACCCCCTCACGCTCGGGG+CGG + chr1_3:55469808-55469827 Msa0126380:intron 75.0%
ATCCCGCCCCGAGCGTGAGG+GGG - chr1_3:55469814-55469833 None:intergenic 75.0%
! CACCCCCTCACGCTCGGGGC+GGG + chr1_3:55469809-55469828 Msa0126380:intron 80.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 55460889 55471775 55460889 ID=Msa0126380;Name=Msa0126380
chr1_3 mRNA 55460889 55471775 55460889 ID=Msa0126380-mRNA-1;Parent=Msa0126380;Name=Msa0126380-mRNA-1;_AED=0.14;_eAED=0.14;_QI=437|1|1|1|0.88|0.9|10|197|479
chr1_3 exon 55460889 55461528 55460889 ID=Msa0126380-mRNA-1:exon:17239;Parent=Msa0126380-mRNA-1
chr1_3 exon 55463097 55463226 55463097 ID=Msa0126380-mRNA-1:exon:17240;Parent=Msa0126380-mRNA-1
chr1_3 exon 55463356 55463603 55463356 ID=Msa0126380-mRNA-1:exon:17241;Parent=Msa0126380-mRNA-1
chr1_3 exon 55463958 55464185 55463958 ID=Msa0126380-mRNA-1:exon:17242;Parent=Msa0126380-mRNA-1
chr1_3 exon 55466057 55466219 55466057 ID=Msa0126380-mRNA-1:exon:17243;Parent=Msa0126380-mRNA-1
chr1_3 exon 55466292 55466365 55466292 ID=Msa0126380-mRNA-1:exon:17244;Parent=Msa0126380-mRNA-1
chr1_3 exon 55467222 55467315 55467222 ID=Msa0126380-mRNA-1:exon:17245;Parent=Msa0126380-mRNA-1
chr1_3 exon 55467727 55467802 55467727 ID=Msa0126380-mRNA-1:exon:17246;Parent=Msa0126380-mRNA-1
chr1_3 exon 55470947 55471018 55470947 ID=Msa0126380-mRNA-1:exon:17247;Parent=Msa0126380-mRNA-1
chr1_3 exon 55471427 55471775 55471427 ID=Msa0126380-mRNA-1:exon:17248;Parent=Msa0126380-mRNA-1
chr1_3 five_prime_UTR 55460889 55461325 55460889 ID=Msa0126380-mRNA-1:five_prime_utr;Parent=Msa0126380-mRNA-1
chr1_3 CDS 55461326 55461528 55461326 ID=Msa0126380-mRNA-1:cds;Parent=Msa0126380-mRNA-1
chr1_3 CDS 55463097 55463226 55463097 ID=Msa0126380-mRNA-1:cds;Parent=Msa0126380-mRNA-1
chr1_3 CDS 55463356 55463603 55463356 ID=Msa0126380-mRNA-1:cds;Parent=Msa0126380-mRNA-1
chr1_3 CDS 55463958 55464185 55463958 ID=Msa0126380-mRNA-1:cds;Parent=Msa0126380-mRNA-1
chr1_3 CDS 55466057 55466219 55466057 ID=Msa0126380-mRNA-1:cds;Parent=Msa0126380-mRNA-1
chr1_3 CDS 55466292 55466365 55466292 ID=Msa0126380-mRNA-1:cds;Parent=Msa0126380-mRNA-1
chr1_3 CDS 55467222 55467315 55467222 ID=Msa0126380-mRNA-1:cds;Parent=Msa0126380-mRNA-1
chr1_3 CDS 55467727 55467802 55467727 ID=Msa0126380-mRNA-1:cds;Parent=Msa0126380-mRNA-1
chr1_3 CDS 55470947 55471018 55470947 ID=Msa0126380-mRNA-1:cds;Parent=Msa0126380-mRNA-1
chr1_3 CDS 55471427 55471578 55471427 ID=Msa0126380-mRNA-1:cds;Parent=Msa0126380-mRNA-1
chr1_3 three_prime_UTR 55471579 55471775 55471579 ID=Msa0126380-mRNA-1:three_prime_utr;Parent=Msa0126380-mRNA-1
Gene Sequence

>Msa0126380

ATGATGGATCTGAGATATTTATTATTGATTATACTAGCTTTGGAAATTTTGTGTGTTGCGAATGGAGATAATTTGGTGTTTCAGGTGCAGCGTCGGAAAACGAGTTTAAGTGGAATTAAACATCACGATCATCTTCGTCGTGGTAGATTTCTTTCATCCGTTGATTTCAATCTTGGTGGTAATGGTCTTCCTACTAGAACTGGGTTGTATTTCACTAAACTTGGGCTTGGCTCTCCAAAGAAGGACTACTATGTCCAAGTTGATACAGGAAGTGATATTCTGTGGGTGAATTGTGTTGAGTGCTCAAGATGTCCTACGAAAAGCCAAATCGGTATGGACTTGACTCTCTATGACCCAAAGGGATCTCATACTTCAGAGTTAATTTCTTGTGATCATGAGTTTTGCTCTTCCACATATGATGGTCCGATTCCTGGTTGTAAGGCGGAAACACCCTGCCCCTATAGCATAACTTATGGAGATGGAAGTGCAACTACTGGATACTATGTCAGGGACTATCTTACTTTTGACCGGATCAACGGAAATCTCCATACCGCACCGCAAAATAGCAGCATCATTTTTGGGTGTGGCGCTGTACAATCTGGCACATTGGGTGCATCTTCCGAAGAAGCCCTTGATGGAATAATTGGTTTTGGACAGGAAAATTCTTCTGTGCTTTCACAGCTTGCTGCATCTCGAAAGGTGAAAAAAATATTTTCACACTGCCTTGACAATATTCGTGGTGGTGGAATATTTGCCATAGGGGAATTGGTGGAACCAAAAGTCAGAACAACTCCATTGGTACCAAATATGGCACATTACAATGTGGTTTTGAAGAATATTGAAGTTGATGGTGATGTTCTACAGCTTCCCTCGGATATATTTGATTCTGGAAATGGGAAGGGCACAGTGATTGATAGTGGAACAACCTTGGCTTATCTTCCTGTCATAGTCTATGACCAACTAATTCCAAAGATTTTTGCCCGTCAGCCTGAATTGAAATTAGCTCGCATTGAGGAACAATTTAAATGTTTTCCGTATGCTGGAAATGTTGATGGTGGATTTCCAGTTGTCAAACTACATTTTGAGGGTTCTCTTTCTCTGACAGTTTATCCTCATGACTATCTGTTCCAATATAAGGTGGCTGGTGTCCGATGTATTGGCTGGCAGAAAAGTGTGACCCAAACTAAGGATGGAAAGGACATGACACTTCTTGGAGATTTGGTACTTTCAAACAAACTTGTCTTGTACGATCTTGAGAATATGGCTATTGGATGGACTGAATACAATTGCTCTTCCAGCATTAAAGTGAAGGATGCAACGACTGGAATAGTACATACAGTGGGCGCACACAATATTTCTTCAGCTTCTACCTTTTTAATTGGTAGAATATTGTCATTGTTTTTGTTGCTAATTGCCATGTTAAACTATTTTTATAACTAG
Protein sequence

>Msa0126380

MMDLRYLLLIILALEILCVANGDNLVFQVQRRKTSLSGIKHHDHLRRGRFLSSVDFNLGGNGLPTRTGLYFTKLGLGSPKKDYYVQVDTGSDILWVNCVECSRCPTKSQIGMDLTLYDPKGSHTSELISCDHEFCSSTYDGPIPGCKAETPCPYSITYGDGSATTGYYVRDYLTFDRINGNLHTAPQNSSIIFGCGAVQSGTLGASSEEALDGIIGFGQENSSVLSQLAASRKVKKIFSHCLDNIRGGGIFAIGELVEPKVRTTPLVPNMAHYNVVLKNIEVDGDVLQLPSDIFDSGNGKGTVIDSGTTLAYLPVIVYDQLIPKIFARQPELKLARIEEQFKCFPYAGNVDGGFPVVKLHFEGSLSLTVYPHDYLFQYKVAGVRCIGWQKSVTQTKDGKDMTLLGDLVLSNKLVLYDLENMAIGWTEYNCSSSIKVKDATTGIVHTVGAHNISSASTFLIGRILSLFLLLIAMLNYFYN*