AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0527150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0527150 MtrunA17_Chr8g0339111 100.000 214 0 0 236 449 2 215 2.64e-154 436
Msa0527150 MtrunA17_Chr8g0339111 87.831 189 21 1 6 194 26 212 3.81e-115 336
Msa0527150 MtrunA17_Chr8g0339121 94.388 196 11 0 3 198 2 197 3.59e-122 354
Msa0527150 MtrunA17_Chr8g0339121 87.302 189 22 1 260 446 5 193 3.59e-106 313
Msa0527150 MtrunA17_Chr7g0234781 91.667 216 16 1 236 449 2 217 1.13e-121 353
Msa0527150 MtrunA17_Chr7g0234781 88.827 179 20 0 7 185 27 205 2.41e-107 317
Msa0527150 MtrunA17_Chr4g0006811 86.082 194 27 0 3 196 2 195 4.86e-119 345
Msa0527150 MtrunA17_Chr4g0006811 86.528 193 23 2 260 449 5 197 1.89e-112 329
Msa0527150 MtrunA17_Chr4g0006791 73.494 83 21 1 368 449 12 94 1.55e-33 121
Msa0527150 MtrunA17_Chr4g0006791 70.732 82 23 1 116 196 12 93 4.03e-32 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0527150 AT5G59240.1 85.644 202 22 1 236 437 2 196 1.99e-121 352
Msa0527150 AT5G59240.1 79.444 180 28 1 6 185 26 196 4.54e-96 288
Msa0527150 AT5G20290.1 80.383 209 34 1 236 437 2 210 1.08e-103 308
Msa0527150 AT5G20290.1 77.174 184 37 1 7 185 27 210 4.62e-90 273

Find 112 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCAAGCTGGCGTTCTTTC+TGG 0.095224 3_4:+81371505 None:intergenic
CACCCTTGCCCTTCTTCTTC+TGG 0.129125 3_4:+81371261 None:intergenic
CAACACTATGGTGTTGAAAT+TGG 0.226186 3_4:-81377229 Msa0527150:CDS
TGGATTATGCAGCTACATTT+TGG 0.244666 3_4:-81376546 Msa0527150:intron
AATAACCAAGAACAGTTTAA+AGG 0.276098 3_4:+81371087 None:intergenic
CAACACTATGGTGTTGATAT+TGG 0.287835 3_4:-81372094 Msa0527150:CDS
CACCCTTGCCCTTCTTCCTC+TGG 0.295350 3_4:+81376489 None:intergenic
AAAGAAAATTGCTGCCAAAA+AGG 0.314071 3_4:-81377200 Msa0527150:CDS
TAACCATGTGCTGAGGAAAT+TGG 0.317141 3_4:-81376759 Msa0527150:CDS
TGCAGTATTCAGAAATTAAT+CGG 0.325013 3_4:+81371021 None:intergenic
TGTGAAGAGTGCTATTGTTC+AGG 0.325462 3_4:-81372149 Msa0527150:CDS
CTTGATAGCTTGGTGTTAGC+TGG 0.334031 3_4:+81377478 None:intergenic
AGTGCGCACAAGCTCATTGC+TGG 0.374093 3_4:+81377315 None:intergenic
CTCGACCTGGTCAATGTGGC+AGG 0.375397 3_4:-81376655 Msa0527150:CDS
AGTTCGCACCAACTCATTGT+TGG 0.421739 3_4:+81372180 None:intergenic
GGTCAATGTGGCAGGGCTGA+TGG 0.436487 3_4:-81376647 Msa0527150:CDS
TCTAAAAGCATCACCTGTGC+AGG 0.438262 3_4:+81377175 None:intergenic
ACTTCCCCATGAGAAGTTAC+CGG 0.438688 3_4:+81372252 None:intergenic
GCACAAAACATCTCTTTGTT+CGG 0.438936 3_4:+81371176 None:intergenic
ATGCATATTCAGACTCAGAT+TGG 0.446299 3_4:-81375167 Msa0527150:intron
GTGAGGAGGATTCGTGTTAG+AGG 0.449573 3_4:-81372310 Msa0527150:CDS
GTGAGGAGTATTCGTGTTAG+AGG 0.453283 3_4:-81377445 Msa0527150:CDS
GAAATGTAGAGCTTTGAGAT+TGG 0.458837 3_4:-81377413 Msa0527150:CDS
CAATGGTACCTTCAACACTA+TGG 0.459815 3_4:-81372106 Msa0527150:CDS
GGTCAATGCGGCAGAGCTGA+TGG 0.461383 3_4:-81371423 Msa0527150:CDS
ATATGCAGCTACATTCTTGA+AGG 0.462284 3_4:-81371314 Msa0527150:intron
ATGCACAAGAGACGTGAAAC+TGG 0.464049 3_4:-81373293 Msa0527150:CDS
GCCCACATTGAAGAGCAGTT+TGG 0.466515 3_4:-81376707 Msa0527150:CDS
AGAGCTTTGAGATTGGATAC+TGG 0.469624 3_4:-81377406 Msa0527150:CDS
TTTCAACACCATAGTGTTGA+AGG 0.469659 3_4:+81377233 None:intergenic
CTTCAAGTTTCCTTCTACCG+TGG 0.471953 3_4:+81375583 None:intergenic
ATTGAAGAGCAGTTTGGTGG+TGG 0.472462 3_4:-81376701 Msa0527150:CDS
TGTAAACCACATTTAGCAAA+CGG 0.475109 3_4:+81377344 None:intergenic
TGTTAAGAGCGCTATCGTGC+AGG 0.477913 3_4:-81377284 Msa0527150:CDS
CAGTGGTACCTTCAACACTA+TGG 0.479335 3_4:-81377241 Msa0527150:CDS
CTATTGCAATGCTGGACTGC+AGG 0.480915 3_4:-81375112 Msa0527150:intron
GTAAACCACATTTAGCAAAC+GGG 0.484419 3_4:+81377345 None:intergenic
GTCAATGTGGCAGGGCTGAT+GGG 0.486542 3_4:-81376646 Msa0527150:intron
ATAGCTTGGTGTTAGCTGGC+TGG 0.487106 3_4:+81377482 None:intergenic
TTGAAGGTACCATTGCTTGA+AGG 0.488302 3_4:+81372114 None:intergenic
CAGCTACATTCTTGAAGGTA+AGG 0.488998 3_4:-81371309 Msa0527150:CDS
TATCAACACCATAGTGTTGA+AGG 0.489500 3_4:+81372098 None:intergenic
GTACTGATCTATTGCAATGC+TGG 0.491593 3_4:-81375120 Msa0527150:CDS
GAAGTGGAGAGCTTTGAGAT+TGG 0.494282 3_4:-81372278 Msa0527150:CDS
TGTGCTTCAGCTGATGCTGT+TGG 0.499070 3_4:-81371158 Msa0527150:three_prime_UTR
CCTCAATGTGGGCATCAAGC+TGG 0.501011 3_4:+81371493 None:intergenic
CTTCAATGTGGGCATCGAGC+TGG 0.501663 3_4:+81376717 None:intergenic
TCAGCTCTGCCGCATTGACC+AGG 0.506358 3_4:+81371426 None:intergenic
TGAAGGTACCACTGCTTGAA+TGG 0.509010 3_4:+81377250 None:intergenic
ATTGAGGAGCAGTTTGGTGG+TGG 0.510507 3_4:-81371477 Msa0527150:CDS
TGAAGGTACCATTGCTTGAA+GGG 0.514607 3_4:+81372115 None:intergenic
GCCCACATTGAGGAGCAGTT+TGG 0.515176 3_4:-81371483 Msa0527150:CDS
TGGATACCGGTAACTTCTCA+TGG 0.515609 3_4:-81372258 Msa0527150:CDS
GAAGAAACTCCAGAGGAAGA+AGG 0.516432 3_4:-81376498 Msa0527150:CDS
GGAAACTTGAAGTTGGCAAA+AGG 0.520722 3_4:-81375572 Msa0527150:intron
CACATTGAGGAGCAGTTTGG+TGG 0.527285 3_4:-81371480 Msa0527150:CDS
GAAGAAACTCCAGAAGAAGA+AGG 0.530638 3_4:-81371270 Msa0527150:CDS
TTGCAATTTACAGGAGGCTG+AGG 0.535370 3_4:-81371583 Msa0527150:intron
TTAATTTCTGAATACTGCAA+TGG 0.538804 3_4:-81371017 Msa0527150:three_prime_UTR
GCATGCATTTCTTCACGACC+TGG 0.542463 3_4:-81371444 Msa0527150:CDS
GCATGCATTTCTTCTCGACC+TGG 0.542463 3_4:-81376668 Msa0527150:CDS
AAGAAACTCCAGAGGAAGAA+GGG 0.547896 3_4:-81376497 Msa0527150:CDS
GAAAACCCGTTTGCTAAATG+TGG 0.549447 3_4:-81377350 Msa0527150:CDS
TCAGCCCTGCCACATTGACC+AGG 0.549946 3_4:+81376650 None:intergenic
AGGAGGATTCGTGTTAGAGG+TGG 0.553665 3_4:-81372307 Msa0527150:CDS
TGGATACTGGAAACATCTCA+TGG 0.567538 3_4:-81377393 Msa0527150:CDS
ATGCTGCTCCCTTCAAGCAA+TGG 0.568267 3_4:-81372123 Msa0527150:CDS
TTGAAGAGCAGTTTGGTGGT+GGG 0.568882 3_4:-81376700 Msa0527150:CDS
CTCCAGAAGAAGAAGGGCAA+GGG 0.571076 3_4:-81371263 Msa0527150:CDS
CTCCAGAGGAAGAAGGGCAA+GGG 0.571076 3_4:-81376491 Msa0527150:intron
CACATTGAAGAGCAGTTTGG+TGG 0.571188 3_4:-81376704 Msa0527150:CDS
ACCAAACTGCTCTTCAATGT+GGG 0.572191 3_4:+81376706 None:intergenic
CAAAACTCGTTTGCTCGATG+TGG 0.574685 3_4:-81372215 Msa0527150:CDS
ACTCAGATTGGATGGTAATG+AGG 0.576340 3_4:-81375155 Msa0527150:CDS
GGATACCGGTAACTTCTCAT+GGG 0.577966 3_4:-81372257 Msa0527150:CDS
GTCAATGCGGCAGAGCTGAT+GGG 0.580186 3_4:-81371422 Msa0527150:intron
TCGACCTGGTCAATGTGGCA+GGG 0.582666 3_4:-81376654 Msa0527150:CDS
TCTCCAATTTCCTCAGCACA+TGG 0.587716 3_4:+81376756 None:intergenic
CACCAAACTGCTCTTCAATG+TGG 0.590048 3_4:+81376705 None:intergenic
GGTAGAAGGAAACTTGAAGT+TGG 0.590693 3_4:-81375579 Msa0527150:CDS
GGATACTGGAAACATCTCAT+GGG 0.590726 3_4:-81377392 Msa0527150:CDS
CCAGCTTGATGCCCACATTG+AGG 0.592707 3_4:-81371493 Msa0527150:CDS
ATATTCAGACTCAGATTGGA+TGG 0.594509 3_4:-81375163 Msa0527150:intron
GGGGAAGTGAAGCTGTCACT+CGG 0.595119 3_4:-81377372 Msa0527150:CDS
AAGAAACTCCAGAAGAAGAA+GGG 0.596297 3_4:-81371269 Msa0527150:CDS
ACCAAACTGCTCCTCAATGT+GGG 0.596753 3_4:+81371482 None:intergenic
GTTTCATTTAGGTATGAGCT+CGG 0.597421 3_4:-81377508 Msa0527150:CDS
ACTCCAGAGGAAGAAGGGCA+AGG 0.602324 3_4:-81376492 Msa0527150:CDS
CAGATTGGATGGTAATGAGG+TGG 0.603963 3_4:-81375152 Msa0527150:CDS
AAATGTTAGCAAGAAAGAGG+AGG 0.606920 3_4:-81372059 Msa0527150:intron
CTGGTGGCAAGAAGAAAGCA+TGG 0.611110 3_4:-81373274 Msa0527150:CDS
ACTCCAGAAGAAGAAGGGCA+AGG 0.618644 3_4:-81371264 Msa0527150:CDS
TCTTCTCGACCTGGTCAATG+TGG 0.620321 3_4:-81376659 Msa0527150:CDS
CACCAAACTGCTCCTCAATG+TGG 0.622269 3_4:+81371481 None:intergenic
AGAGCTTTGAGATTGGATAC+CGG 0.636809 3_4:-81372271 Msa0527150:CDS
ATGCTGCTCCATTCAAGCAG+TGG 0.639929 3_4:-81377258 Msa0527150:CDS
CTAAAAGCATCACCTGTGCA+GGG 0.642907 3_4:+81377176 None:intergenic
AGGAGTATTCGTGTTAGAGG+TGG 0.646659 3_4:-81377442 Msa0527150:CDS
TTAGAGGTGGAAATGTGAAG+TGG 0.659708 3_4:-81372294 Msa0527150:CDS
ATGGAAACAATACAATCAAG+CGG 0.663363 3_4:+81371238 None:intergenic
CAATGCTTCCAACAATGAGT+TGG 0.663472 3_4:-81372188 Msa0527150:CDS
GTTACATCTAGGTACGAGCT+CGG 0.663738 3_4:-81372373 Msa0527150:intron
GATACTGGAAACATCTCATG+GGG 0.671396 3_4:-81377391 Msa0527150:CDS
CACAAGAGACGTGAAACTGG+TGG 0.674239 3_4:-81373290 Msa0527150:CDS
AAAAGAGTAACCATGTGCTG+AGG 0.687141 3_4:-81376766 Msa0527150:CDS
TCTACATGAAGAAACTCCAG+AGG 0.688170 3_4:-81376505 Msa0527150:CDS
TCTTCACGACCTGGTCAATG+CGG 0.690237 3_4:-81371435 Msa0527150:CDS
GATACCGGTAACTTCTCATG+GGG 0.694944 3_4:-81372256 Msa0527150:CDS
CAAGCAACAAGACAGTGAGG+AGG 0.706786 3_4:-81372324 Msa0527150:CDS
TATCAAGCAACAAGACAGTG+AGG 0.731948 3_4:-81372327 Msa0527150:CDS
TATCAAGCAACAAAACAGTG+AGG 0.754889 3_4:-81377462 Msa0527150:CDS
GTGGCAAGAAGAAAGCATGG+AGG 0.807428 3_4:-81373271 Msa0527150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACCTAATATTATAAATT+TGG - chr3_4:81372366-81372385 Msa0527150:intron 10.0%
!!! TATTTTTACATTTTTAAAAG+GGG + chr3_4:81373142-81373161 None:intergenic 10.0%
!!! AATAAGATTATTTTCTTATA+AGG - chr3_4:81375705-81375724 Msa0527150:intron 10.0%
!! TTAAAAAGTAATCATAAATT+AGG + chr3_4:81376051-81376070 None:intergenic 10.0%
!! AATAAAATCAACAAAACTTA+AGG + chr3_4:81371435-81371454 None:intergenic 15.0%
!!! AGTTTTGTTGATTTTATTTT+TGG - chr3_4:81371437-81371456 Msa0527150:CDS 15.0%
!!! AAGTAATGGAATTATATATT+CGG + chr3_4:81371493-81371512 None:intergenic 15.0%
!!! TGATTTGATGATAATATATA+TGG - chr3_4:81371524-81371543 Msa0527150:CDS 15.0%
!!! AATGTTAATTTTTGGTTTTT+CGG - chr3_4:81372326-81372345 Msa0527150:CDS 15.0%
!!! ATTTTTACATTTTTAAAAGG+GGG + chr3_4:81373141-81373160 None:intergenic 15.0%
!! TATTAATTTAGTGTTGTATT+AGG - chr3_4:81373487-81373506 Msa0527150:intron 15.0%
!! ATTAATTTAGTGTTGTATTA+GGG - chr3_4:81373488-81373507 Msa0527150:intron 15.0%
!! TTCATATTTATTAATTGATG+TGG - chr3_4:81374340-81374359 Msa0527150:intron 15.0%
!!! TTCATATTTTATATAAGTCT+AGG - chr3_4:81374423-81374442 Msa0527150:intron 15.0%
!! TATGTGTAAAAAAAATTACT+TGG - chr3_4:81374750-81374769 Msa0527150:intron 15.0%
!! TCTTTATATATTTATGACAA+AGG - chr3_4:81374835-81374854 Msa0527150:intron 15.0%
!! ATTAAAAAGAGAGTAAAAAA+GGG + chr3_4:81375239-81375258 None:intergenic 15.0%
!! TATTAAAAAGAGAGTAAAAA+AGG + chr3_4:81375240-81375259 None:intergenic 15.0%
!!! TTTTGTTATTGTTTTAGAAA+TGG - chr3_4:81375326-81375345 Msa0527150:intron 15.0%
!! TAATTATAGCAAAAAGATAA+GGG + chr3_4:81375780-81375799 None:intergenic 15.0%
!! ATAATTATAGCAAAAAGATA+AGG + chr3_4:81375781-81375800 None:intergenic 15.0%
!!! TAGTTTACATTTCTATTTTT+TGG - chr3_4:81375830-81375849 Msa0527150:intron 15.0%
!!! AGTTTACATTTCTATTTTTT+GGG - chr3_4:81375831-81375850 Msa0527150:intron 15.0%
!! TTTCTGATAAATAATTCATT+AGG - chr3_4:81375883-81375902 Msa0527150:intron 15.0%
!!! ACTTTTTAACTAAGATATTT+TGG - chr3_4:81376062-81376081 Msa0527150:intron 15.0%
!! CATTATAATATCAAAGAAAA+CGG + chr3_4:81376477-81376496 None:intergenic 15.0%
!!! TTTATTCATCTTAAATTTTG+TGG - chr3_4:81376721-81376740 Msa0527150:CDS 15.0%
!! ATAACAAAAGAAAAATAAGC+AGG + chr3_4:81371315-81371334 None:intergenic 20.0%
!! TAATCCAGGAAAAATAAATT+AGG + chr3_4:81371901-81371920 None:intergenic 20.0%
!!! TATGTTTTAGTTGATAATGT+TGG - chr3_4:81372003-81372022 Msa0527150:intron 20.0%
!!! ATGTTTTAGTTGATAATGTT+GGG - chr3_4:81372004-81372023 Msa0527150:intron 20.0%
!!! TACGACATTTTTTTTTTTTG+TGG - chr3_4:81372200-81372219 Msa0527150:CDS 20.0%
!!! ACATTTTTTTTTTTTGTGGA+CGG - chr3_4:81372204-81372223 Msa0527150:CDS 20.0%
!! ATTATGGTTTATTATGATGT+GGG - chr3_4:81372234-81372253 Msa0527150:CDS 20.0%
!!! TTTGCTAGAATGTTAATTTT+TGG - chr3_4:81372318-81372337 Msa0527150:CDS 20.0%
!! CAGTCCAAATTTATAATATT+AGG + chr3_4:81372373-81372392 None:intergenic 20.0%
!! ATGTAAGCAAATTTATAACT+AGG + chr3_4:81372771-81372790 None:intergenic 20.0%
!! AGTACTAAAATTATTTCAGA+TGG - chr3_4:81372833-81372852 Msa0527150:intron 20.0%
!! TTAAACAAAGTTGCATATAT+TGG + chr3_4:81372927-81372946 None:intergenic 20.0%
!! ATTGTTACAAATATATCTCA+AGG + chr3_4:81372964-81372983 None:intergenic 20.0%
!!! AAACAGTTTTTGATTTTGAA+TGG + chr3_4:81373658-81373677 None:intergenic 20.0%
!! TCAAAATCAAAAACTGTTTA+AGG - chr3_4:81373659-81373678 Msa0527150:intron 20.0%
!! TTAGTAAAGAAAAAGATGTT+GGG + chr3_4:81373706-81373725 None:intergenic 20.0%
!! TTTAGTAAAGAAAAAGATGT+TGG + chr3_4:81373707-81373726 None:intergenic 20.0%
!! AGTCCACATAATAAAATATA+TGG - chr3_4:81374098-81374117 Msa0527150:intron 20.0%
!! GTCCACATAATAAAATATAT+GGG - chr3_4:81374099-81374118 Msa0527150:intron 20.0%
!!! AACCCATATATTTTATTATG+TGG + chr3_4:81374104-81374123 None:intergenic 20.0%
!! CTTGTATAAATATATAATCG+TGG - chr3_4:81374148-81374167 Msa0527150:intron 20.0%
!!! TTTTTTAGGGAGAATAATAA+TGG - chr3_4:81374177-81374196 Msa0527150:intron 20.0%
!! TATAAAATATATGCATACGA+TGG + chr3_4:81374222-81374241 None:intergenic 20.0%
!! GTATTATTTAATCCTGAAAT+GGG - chr3_4:81375606-81375625 Msa0527150:CDS 20.0%
!! TATTATTTAATCCTGAAATG+GGG - chr3_4:81375607-81375626 Msa0527150:CDS 20.0%
!!! AATTATTTTTCTCACAAACA+CGG - chr3_4:81375795-81375814 Msa0527150:intron 20.0%
!!! TATTTTTTGGGATAGTTTTT+TGG - chr3_4:81375843-81375862 Msa0527150:intron 20.0%
!! TTGGTTGTTTAAATGTTATT+TGG - chr3_4:81376573-81376592 Msa0527150:intron 20.0%
!! TAATAATCTTTGCAATTTAC+AGG - chr3_4:81376868-81376887 Msa0527150:intron 20.0%
!!! TTCTCCTAATTTATTTTTCC+TGG - chr3_4:81371894-81371913 Msa0527150:intron 25.0%
!!! TTTTTACTTTGTTGTGGAAT+TGG - chr3_4:81372135-81372154 Msa0527150:CDS 25.0%
! GATTATGGTTTATTATGATG+TGG - chr3_4:81372233-81372252 Msa0527150:CDS 25.0%
!! TTTGCTAGATTGTCAAATTT+TGG - chr3_4:81372278-81372297 Msa0527150:CDS 25.0%
!!! GATTGTCAAATTTTGGTTTT+TGG - chr3_4:81372285-81372304 Msa0527150:CDS 25.0%
!!! TTTGGACTGATTTTTCATTT+TGG - chr3_4:81372384-81372403 Msa0527150:intron 25.0%
!!! TTGGACTGATTTTTCATTTT+GGG - chr3_4:81372385-81372404 Msa0527150:intron 25.0%
! ATTCAGTATTGCATAATAAG+AGG + chr3_4:81372426-81372445 None:intergenic 25.0%
!! AATACTGAATTTGTTTGCAT+AGG - chr3_4:81372436-81372455 Msa0527150:intron 25.0%
!! AAATTTGCTTACATAGATGA+AGG - chr3_4:81372777-81372796 Msa0527150:intron 25.0%
!! ACTTTGTTTAAACAAGTTGT+AGG - chr3_4:81372936-81372955 Msa0527150:intron 25.0%
! ATAAAAAATGAGTGATCCTA+AGG - chr3_4:81373159-81373178 Msa0527150:intron 25.0%
! ATATTAAAACATCTGGATTC+TGG - chr3_4:81373207-81373226 Msa0527150:intron 25.0%
! CTTGATTTATTGTTTCAAAG+AGG - chr3_4:81373244-81373263 Msa0527150:intron 25.0%
! TTTATTGTTTCAAAGAGGAA+AGG - chr3_4:81373249-81373268 Msa0527150:intron 25.0%
! TTATTGTTTCAAAGAGGAAA+GGG - chr3_4:81373250-81373269 Msa0527150:intron 25.0%
! TATATGTTGTAATGAGATGT+GGG - chr3_4:81373458-81373477 Msa0527150:intron 25.0%
! GAGAATGATGAAAAACAAAA+GGG - chr3_4:81373564-81373583 Msa0527150:intron 25.0%
! TAGTAAAGAAAAAGATGTTG+GGG + chr3_4:81373705-81373724 None:intergenic 25.0%
!! TCTTAGGAGATAATTTTGTA+TGG - chr3_4:81373828-81373847 Msa0527150:intron 25.0%
! TGTATGAGTAATAGATTATG+AGG + chr3_4:81373894-81373913 None:intergenic 25.0%
!!! AATCGTGGTTTTTGTTTTTT+AGG - chr3_4:81374163-81374182 Msa0527150:intron 25.0%
!!! ATCGTGGTTTTTGTTTTTTA+GGG - chr3_4:81374164-81374183 Msa0527150:intron 25.0%
! AGACTAATTTCTATGCAATT+TGG - chr3_4:81374617-81374636 Msa0527150:intron 25.0%
! AAGATCTCCAAAAAAATATG+TGG - chr3_4:81374710-81374729 Msa0527150:intron 25.0%
!!! AATCATGCCACATATTTTTT+TGG + chr3_4:81374720-81374739 None:intergenic 25.0%
! TTTGTGTCAGCAAAATAAAA+TGG - chr3_4:81374871-81374890 Msa0527150:intron 25.0%
! TTGTGTCAGCAAAATAAAAT+GGG - chr3_4:81374872-81374891 Msa0527150:intron 25.0%
! ATTGATTGAAGAAGATTAGA+AGG + chr3_4:81375048-81375067 None:intergenic 25.0%
! TTCAATTCAACTTTCTCTAA+TGG - chr3_4:81375094-81375113 Msa0527150:intron 25.0%
! TGATTTATGTGTTGAAATTC+TGG - chr3_4:81375283-81375302 Msa0527150:intron 25.0%
! GATTTATGTGTTGAAATTCT+GGG - chr3_4:81375284-81375303 Msa0527150:intron 25.0%
!!! TGTTATTGTTTTAGAAATGG+TGG - chr3_4:81375329-81375348 Msa0527150:intron 25.0%
!!! GTTATTGTTTTAGAAATGGT+GGG - chr3_4:81375330-81375349 Msa0527150:intron 25.0%
!!! TTCACTTTTTTTTTCAATGC+TGG - chr3_4:81375373-81375392 Msa0527150:intron 25.0%
!!! CAGTGTTAGTTTTTAGATTT+TGG - chr3_4:81375486-81375505 Msa0527150:intron 25.0%
! CGTATTATTTAATCCTGAAA+TGG - chr3_4:81375605-81375624 Msa0527150:CDS 25.0%
! TGACATAATTCACAAAATCT+TGG + chr3_4:81375635-81375654 None:intergenic 25.0%
!! TCAAATTGCAGTTCATATTT+TGG - chr3_4:81375652-81375671 Msa0527150:intron 25.0%
! TCTTATTGTTGTATCATATC+TGG + chr3_4:81375692-81375711 None:intergenic 25.0%
!!! ATTATTTTTCTCACAAACAC+GGG - chr3_4:81375796-81375815 Msa0527150:intron 25.0%
! GTCTCAATCTTATTATTTGT+TGG - chr3_4:81376011-81376030 Msa0527150:intron 25.0%
!!! ATATTTTGGTTGTTACATCT+AGG - chr3_4:81376076-81376095 Msa0527150:intron 25.0%
! TTAAAGATCAGTTAATCACT+TGG - chr3_4:81376504-81376523 Msa0527150:CDS 25.0%
! AAAACCAGTATAAAAATTGC+GGG + chr3_4:81376555-81376574 None:intergenic 25.0%
! CAAAACCAGTATAAAAATTG+CGG + chr3_4:81376556-81376575 None:intergenic 25.0%
!! TGTTTAAATGTTATTTGGCT+TGG - chr3_4:81376578-81376597 Msa0527150:intron 25.0%
!! GTTTAAATGTTATTTGGCTT+GGG - chr3_4:81376579-81376598 Msa0527150:intron 25.0%
! AGGAAAAAAAAAAAGTTAGG+AGG + chr3_4:81377123-81377142 None:intergenic 25.0%
! TCGAGGAAAAAAAAAAAGTT+AGG + chr3_4:81377126-81377145 None:intergenic 25.0%
! ACTAATGCAATACAAAAACA+TGG + chr3_4:81377244-81377263 None:intergenic 25.0%
!! ATTTTCCTTTAAACTGTTCT+TGG - chr3_4:81377368-81377387 Msa0527150:CDS 25.0%
! AATAACCAAGAACAGTTTAA+AGG + chr3_4:81377376-81377395 None:intergenic 25.0%
! TGCAGTATTCAGAAATTAAT+CGG + chr3_4:81377442-81377461 None:intergenic 25.0%
! TTAATTTCTGAATACTGCAA+TGG - chr3_4:81377443-81377462 Msa0527150:CDS 25.0%
TGTAAACCACATTTAGCAAA+CGG + chr3_4:81371119-81371138 None:intergenic 30.0%
AAAGAAAATTGCTGCCAAAA+AGG - chr3_4:81371260-81371279 Msa0527150:CDS 30.0%
TCAAGTACAATAGCAAGTAA+TGG + chr3_4:81371507-81371526 None:intergenic 30.0%
! TTGATTTATGTGTAACTTGC+AGG - chr3_4:81371644-81371663 Msa0527150:intron 30.0%
GTCTAATGTCATCATTCTAA+AGG + chr3_4:81372037-81372056 None:intergenic 30.0%
TAAACGAATGCGCTAAAAAA+AGG + chr3_4:81372059-81372078 None:intergenic 30.0%
ACCAAAAATCAAGAGACAAT+GGG + chr3_4:81372096-81372115 None:intergenic 30.0%
!!! ACCAGTTTTTTACTTTGTTG+TGG - chr3_4:81372129-81372148 Msa0527150:CDS 30.0%
TCCACAACAAAGTAAAAAAC+TGG + chr3_4:81372133-81372152 None:intergenic 30.0%
! TTTCGGTTATGCTATTTGAA+TGG - chr3_4:81372343-81372362 Msa0527150:CDS 30.0%
TGACACAAGGTGTAAAAATT+AGG - chr3_4:81372547-81372566 Msa0527150:intron 30.0%
GACACAAGGTGTAAAAATTA+GGG - chr3_4:81372548-81372567 Msa0527150:intron 30.0%
AAGGTGTAAAAATTAGGGTA+TGG - chr3_4:81372553-81372572 Msa0527150:intron 30.0%
TTAGTTTCACTTGTATCCAA+AGG - chr3_4:81373064-81373083 Msa0527150:intron 30.0%
CTAGAGGATATTAAAACATC+TGG - chr3_4:81373200-81373219 Msa0527150:intron 30.0%
ATTAAACCTTGAAGTGTGAA+AGG - chr3_4:81373385-81373404 Msa0527150:intron 30.0%
CTATATGTTGTAATGAGATG+TGG - chr3_4:81373457-81373476 Msa0527150:intron 30.0%
CGAGAATGATGAAAAACAAA+AGG - chr3_4:81373563-81373582 Msa0527150:intron 30.0%
! CATGATACACATTTTCTCTT+AGG - chr3_4:81373812-81373831 Msa0527150:intron 30.0%
ATAAGAAAAATGTCAGCTCT+TGG - chr3_4:81373936-81373955 Msa0527150:intron 30.0%
TATGTTGTTAGCATTACTCT+TGG + chr3_4:81374017-81374036 None:intergenic 30.0%
! TTTAACACGCTCTTTTTGTT+TGG - chr3_4:81374040-81374059 Msa0527150:intron 30.0%
! GACTCCATATTAATTTGATG+GGG + chr3_4:81374082-81374101 None:intergenic 30.0%
! GGACTCCATATTAATTTGAT+GGG + chr3_4:81374083-81374102 None:intergenic 30.0%
! TGGACTCCATATTAATTTGA+TGG + chr3_4:81374084-81374103 None:intergenic 30.0%
TGGGTTAAAATATGTGATTC+TGG - chr3_4:81374118-81374137 Msa0527150:intron 30.0%
TTTAGGGAGAATAATAATGG+TGG - chr3_4:81374180-81374199 Msa0527150:intron 30.0%
!!! ACAATACCATTTTTTGAGAC+AGG - chr3_4:81374490-81374509 Msa0527150:intron 30.0%
!!! CAATACCATTTTTTGAGACA+GGG - chr3_4:81374491-81374510 Msa0527150:intron 30.0%
AAATTCCCTGTCTCAAAAAA+TGG + chr3_4:81374499-81374518 None:intergenic 30.0%
!!! GCTGATGCAATTTTTTTTCT+GGG + chr3_4:81374565-81374584 None:intergenic 30.0%
!!! AGCTGATGCAATTTTTTTTC+TGG + chr3_4:81374566-81374585 None:intergenic 30.0%
!!! GATTGTTGATTTTGAATCTC+AGG - chr3_4:81375128-81375147 Msa0527150:CDS 30.0%
!!! ACTTTTTTTTTCAATGCTGG+TGG - chr3_4:81375376-81375395 Msa0527150:intron 30.0%
!! TTTATTGATGATGTGGGAAT+TGG - chr3_4:81375415-81375434 Msa0527150:intron 30.0%
!! TTATTTTTCTCACAAACACG+GGG - chr3_4:81375797-81375816 Msa0527150:intron 30.0%
ATCAGAAAATATGTGCTATC+TGG + chr3_4:81375871-81375890 None:intergenic 30.0%
!! TTATTTGTTGGCTTTCTGTT+TGG - chr3_4:81376023-81376042 Msa0527150:intron 30.0%
GAAAAATGTTAGCAAGAAAG+AGG - chr3_4:81376398-81376417 Msa0527150:intron 30.0%
!!! CGCAATTTTTATACTGGTTT+TGG - chr3_4:81376554-81376573 Msa0527150:intron 30.0%
!!! GTGGATTTAGTTTTAGATGT+CGG - chr3_4:81376740-81376759 Msa0527150:CDS 30.0%
!!! TGGATTTAGTTTTAGATGTC+GGG - chr3_4:81376741-81376760 Msa0527150:CDS 30.0%
TCAGTTTCAACATATACATG+TGG + chr3_4:81376789-81376808 None:intergenic 30.0%
TAATCTTTGCAATTTACAGG+AGG - chr3_4:81376871-81376890 Msa0527150:intron 30.0%
ATGGAAACAATACAATCAAG+CGG + chr3_4:81377225-81377244 None:intergenic 30.0%
GTTTCATTTAGGTATGAGCT+CGG - chr3_4:81370952-81370971 Msa0527150:three_prime_UTR 35.0%
!! TGTTTTGTTGCTTGATAGCT+TGG + chr3_4:81370995-81371014 None:intergenic 35.0%
TATCAAGCAACAAAACAGTG+AGG - chr3_4:81370998-81371017 Msa0527150:three_prime_UTR 35.0%
!! GAAATGTAGAGCTTTGAGAT+TGG - chr3_4:81371047-81371066 Msa0527150:three_prime_UTR 35.0%
GTAAACCACATTTAGCAAAC+GGG + chr3_4:81371118-81371137 None:intergenic 35.0%
! TTTCAACACCATAGTGTTGA+AGG + chr3_4:81371230-81371249 None:intergenic 35.0%
! CAACACTATGGTGTTGAAAT+TGG - chr3_4:81371231-81371250 Msa0527150:three_prime_UTR 35.0%
TAAACTGCTGCAATATGTTC+AGG - chr3_4:81371336-81371355 Msa0527150:intron 35.0%
CTTTCCCATTAGATAAAGAG+CGG - chr3_4:81371566-81371585 Msa0527150:CDS 35.0%
TTCACCGCTCTTTATCTAAT+GGG + chr3_4:81371573-81371592 None:intergenic 35.0%
ATTCACCGCTCTTTATCTAA+TGG + chr3_4:81371574-81371593 None:intergenic 35.0%
! ATTTATGTGTAACTTGCAGG+AGG - chr3_4:81371647-81371666 Msa0527150:intron 35.0%
AAAATGTAGCTGCATAATCC+AGG + chr3_4:81371915-81371934 None:intergenic 35.0%
! TGGATTATGCAGCTACATTT+TGG - chr3_4:81371914-81371933 Msa0527150:intron 35.0%
! TTATGCAGCTACATTTTGGA+AGG - chr3_4:81371918-81371937 Msa0527150:intron 35.0%
GACCAAAAATCAAGAGACAA+TGG + chr3_4:81372097-81372116 None:intergenic 35.0%
GTAACTAAACAACTTCACGA+AGG + chr3_4:81372183-81372202 None:intergenic 35.0%
!!! TTTTTTTTGTGGACGGCTTT+TGG - chr3_4:81372211-81372230 Msa0527150:CDS 35.0%
! CCTCTTATTTCCAATCCATT+TGG + chr3_4:81372523-81372542 None:intergenic 35.0%
!! CCAAATGGATTGGAAATAAG+AGG - chr3_4:81372520-81372539 Msa0527150:intron 35.0%
AATAAGAGGTGAATGACACA+AGG - chr3_4:81372534-81372553 Msa0527150:intron 35.0%
TCTGTATGTAGATGATCTTC+TGG - chr3_4:81372652-81372671 Msa0527150:intron 35.0%
AAGGCTTAATGTTGCATCAA+AGG - chr3_4:81372796-81372815 Msa0527150:intron 35.0%
TTCGTTGTCAATGTATTGCA+AGG + chr3_4:81373037-81373056 None:intergenic 35.0%
TTAAAACATCTGGATTCTGG+AGG - chr3_4:81373210-81373229 Msa0527150:intron 35.0%
TAAAACATCTGGATTCTGGA+GGG - chr3_4:81373211-81373230 Msa0527150:intron 35.0%
ATGCATATTCAGACTCAGAT+TGG - chr3_4:81373293-81373312 Msa0527150:CDS 35.0%
ATATTCAGACTCAGATTGGA+TGG - chr3_4:81373297-81373316 Msa0527150:CDS 35.0%
! TTGTATTCGAGCCTTATACA+TGG - chr3_4:81373511-81373530 Msa0527150:intron 35.0%
TCGTTGAAGTTCCATGTATA+AGG + chr3_4:81373525-81373544 None:intergenic 35.0%
GAAGACCATCTATAGTGTTA+TGG - chr3_4:81373854-81373873 Msa0527150:intron 35.0%
TGAGCCCCATCAAATTAATA+TGG - chr3_4:81374075-81374094 Msa0527150:intron 35.0%
!! TAATGGTGGATGATTCTTCA+TGG - chr3_4:81374194-81374213 Msa0527150:intron 35.0%
TAAAATGGGCCTGTTTATGA+TGG - chr3_4:81374886-81374905 Msa0527150:intron 35.0%
AAAATGGGCCTGTTTATGAT+GGG - chr3_4:81374887-81374906 Msa0527150:intron 35.0%
ATACTCTCAAAACAAGGGTT+GGG + chr3_4:81374923-81374942 None:intergenic 35.0%
TATACTCTCAAAACAAGGGT+TGG + chr3_4:81374924-81374943 None:intergenic 35.0%
TTCATCCAGTTTCTTCAAGA+TGG - chr3_4:81375013-81375032 Msa0527150:intron 35.0%
TCATCCAGTTTCTTCAAGAT+GGG - chr3_4:81375014-81375033 Msa0527150:intron 35.0%
!! TTTGGGGTTTATTGATGATG+TGG - chr3_4:81375408-81375427 Msa0527150:intron 35.0%
!! TTGGGGTTTATTGATGATGT+GGG - chr3_4:81375409-81375428 Msa0527150:intron 35.0%
TTGTACATGAATGTCTGAAC+TGG - chr3_4:81375987-81376006 Msa0527150:intron 35.0%
TGTACATGAATGTCTGAACT+GGG - chr3_4:81375988-81376007 Msa0527150:intron 35.0%
!!! CTTGATAGTTTTGTGTTAGC+TGG + chr3_4:81376120-81376139 None:intergenic 35.0%
! TATCAACACCATAGTGTTGA+AGG + chr3_4:81376365-81376384 None:intergenic 35.0%
!! CAACACTATGGTGTTGATAT+TGG - chr3_4:81376366-81376385 Msa0527150:intron 35.0%
AAATGTTAGCAAGAAAGAGG+AGG - chr3_4:81376401-81376420 Msa0527150:intron 35.0%
GAAAGAGGAGGTAATGTTAA+TGG - chr3_4:81376413-81376432 Msa0527150:intron 35.0%
! TATGCCCGCAATTTTTATAC+TGG - chr3_4:81376548-81376567 Msa0527150:intron 35.0%
!!! TAGTTTTAGATGTCGGGATA+AGG - chr3_4:81376747-81376766 Msa0527150:CDS 35.0%
GTTTCAACATATACATGTGG+TGG + chr3_4:81376786-81376805 None:intergenic 35.0%
! CTCTAATTTTCTCTGCACAT+GGG + chr3_4:81376930-81376949 None:intergenic 35.0%
ATATGCAGCTACATTCTTGA+AGG - chr3_4:81377146-81377165 Msa0527150:intron 35.0%
AAGAAACTCCAGAAGAAGAA+GGG - chr3_4:81377191-81377210 Msa0527150:CDS 35.0%
GCACAAAACATCTCTTTGTT+CGG + chr3_4:81377287-81377306 None:intergenic 35.0%
!! AGAGCTTTGAGATTGGATAC+TGG - chr3_4:81371054-81371073 Msa0527150:three_prime_UTR 40.0%
TGGATACTGGAAACATCTCA+TGG - chr3_4:81371067-81371086 Msa0527150:three_prime_UTR 40.0%
GGATACTGGAAACATCTCAT+GGG - chr3_4:81371068-81371087 Msa0527150:three_prime_UTR 40.0%
GATACTGGAAACATCTCATG+GGG - chr3_4:81371069-81371088 Msa0527150:three_prime_UTR 40.0%
! GAAAACCCGTTTGCTAAATG+TGG - chr3_4:81371110-81371129 Msa0527150:three_prime_UTR 40.0%
!! TTTGGTGCCTAGATTGTCAT+TGG - chr3_4:81371455-81371474 Msa0527150:CDS 40.0%
GTACTTGCCAATGACAATCT+AGG + chr3_4:81371465-81371484 None:intergenic 40.0%
CTACTATACAAGGAGAATGC+AGG + chr3_4:81371611-81371630 None:intergenic 40.0%
GCAACATCAGCTACTATACA+AGG + chr3_4:81371621-81371640 None:intergenic 40.0%
! CAGCACATGGTTACTCTTTT+TGG + chr3_4:81371694-81371713 None:intergenic 40.0%
AAAAGAGTAACCATGTGCTG+AGG - chr3_4:81371694-81371713 Msa0527150:intron 40.0%
TAACCATGTGCTGAGGAAAT+TGG - chr3_4:81371701-81371720 Msa0527150:intron 40.0%
ACCAAACTGCTCTTCAATGT+GGG + chr3_4:81371757-81371776 None:intergenic 40.0%
!! CAGCTACATTTTGGAAGGTA+AGG - chr3_4:81371923-81371942 Msa0527150:intron 40.0%
TCTACATGAAGAAACTCCAG+AGG - chr3_4:81371955-81371974 Msa0527150:intron 40.0%
AAGAAACTCCAGAGGAAGAA+GGG - chr3_4:81371963-81371982 Msa0527150:intron 40.0%
! GCCCATTGTCTCTTGATTTT+TGG - chr3_4:81372092-81372111 Msa0527150:CDS 40.0%
! TTGGCACTTTTCCATGAAAG+TGG - chr3_4:81372154-81372173 Msa0527150:CDS 40.0%
GCATAGGTGAATTAGATGTG+AGG - chr3_4:81372452-81372471 Msa0527150:intron 40.0%
CTGCAAGGGATCATATAAGA+AGG + chr3_4:81372479-81372498 None:intergenic 40.0%
ATATGATCCCTTGCAGAAAG+AGG - chr3_4:81372483-81372502 Msa0527150:intron 40.0%
ACATACACCTCTTTCTGCAA+GGG + chr3_4:81372493-81372512 None:intergenic 40.0%
CTGCAATGTTGCAAAAACCA+CGG - chr3_4:81372860-81372879 Msa0527150:intron 40.0%
GGTAGAAGGAAACTTGAAGT+TGG - chr3_4:81372881-81372900 Msa0527150:intron 40.0%
GGAAACTTGAAGTTGGCAAA+AGG - chr3_4:81372888-81372907 Msa0527150:intron 40.0%
TATCCAAAGGATCGTGTCAT+GGG - chr3_4:81373077-81373096 Msa0527150:intron 40.0%
! TGATCCTAAGGTGTCTCATA+TGG - chr3_4:81373171-81373190 Msa0527150:intron 40.0%
! ACTCAGATTGGATGGTAATG+AGG - chr3_4:81373305-81373324 Msa0527150:CDS 40.0%
! GTACTGATCTATTGCAATGC+TGG - chr3_4:81373340-81373359 Msa0527150:intron 40.0%
CTTGAACCTTTCACACTTCA+AGG + chr3_4:81373394-81373413 None:intergenic 40.0%
CTTGAAGTGTGAAAGGTTCA+AGG - chr3_4:81373392-81373411 Msa0527150:intron 40.0%
GTTTAACATTCTGCTTGAGC+CGG - chr3_4:81374963-81374982 Msa0527150:intron 40.0%
TGTACCCATCTTGAAGAAAC+TGG + chr3_4:81375021-81375040 None:intergenic 40.0%
! TGCTGGTGGCTATTAGATTT+TGG - chr3_4:81375390-81375409 Msa0527150:intron 40.0%
! GCTGGTGGCTATTAGATTTT+GGG - chr3_4:81375391-81375410 Msa0527150:intron 40.0%
! CTGGTGGCTATTAGATTTTG+GGG - chr3_4:81375392-81375411 Msa0527150:intron 40.0%
AAATCTTGGTACCCCATTTC+AGG + chr3_4:81375621-81375640 None:intergenic 40.0%
GACATTCATGTACAAAGCAC+AGG + chr3_4:81375982-81376001 None:intergenic 40.0%
GTACATGAATGTCTGAACTG+GGG - chr3_4:81375989-81376008 Msa0527150:intron 40.0%
!!! ATAGTTTTGTGTTAGCTGGC+TGG + chr3_4:81376116-81376135 None:intergenic 40.0%
TATCAAGCAACAAGACAGTG+AGG - chr3_4:81376133-81376152 Msa0527150:intron 40.0%
TTAGAGGTGGAAATGTGAAG+TGG - chr3_4:81376166-81376185 Msa0527150:intron 40.0%
!! AGAGCTTTGAGATTGGATAC+CGG - chr3_4:81371054-81371073 Msa0527150:three_prime_UTR 40.0%
CAATGCTTCCAACAATGAGT+TGG - chr3_4:81376272-81376291 Msa0527150:intron 40.0%
!! TGTGAAGAGTGCTATTGTTC+AGG - chr3_4:81376311-81376330 Msa0527150:intron 40.0%
!! TGAAGGTACCATTGCTTGAA+GGG + chr3_4:81376348-81376367 None:intergenic 40.0%
!! TTGAAGGTACCATTGCTTGA+AGG + chr3_4:81376349-81376368 None:intergenic 40.0%
CAATGGTACCTTCAACACTA+TGG - chr3_4:81376354-81376373 Msa0527150:intron 40.0%
TTTAGATGTCGGGATAAGGT+TGG - chr3_4:81376751-81376770 Msa0527150:CDS 40.0%
! GCTCTAATTTTCTCTGCACA+TGG + chr3_4:81376931-81376950 None:intergenic 40.0%
AGAATGTAGCTGCATATTCG+AGG + chr3_4:81377143-81377162 None:intergenic 40.0%
CAGCTACATTCTTGAAGGTA+AGG - chr3_4:81377151-81377170 Msa0527150:intron 40.0%
GAAGAAACTCCAGAAGAAGA+AGG - chr3_4:81377190-81377209 Msa0527150:CDS 40.0%
!! CTTGATAGCTTGGTGTTAGC+TGG + chr3_4:81370985-81371004 None:intergenic 45.0%
!! GTGAGGAGTATTCGTGTTAG+AGG - chr3_4:81371015-81371034 Msa0527150:three_prime_UTR 45.0%
!! AGGAGTATTCGTGTTAGAGG+TGG - chr3_4:81371018-81371037 Msa0527150:three_prime_UTR 45.0%
!! TGAAGGTACCACTGCTTGAA+TGG + chr3_4:81371213-81371232 None:intergenic 45.0%
CAGTGGTACCTTCAACACTA+TGG - chr3_4:81371219-81371238 Msa0527150:three_prime_UTR 45.0%
!! CTAAAAGCATCACCTGTGCA+GGG + chr3_4:81371287-81371306 None:intergenic 45.0%
!! TCTAAAAGCATCACCTGTGC+AGG + chr3_4:81371288-81371307 None:intergenic 45.0%
GGAGAATGCAGGACGTAATT+TGG + chr3_4:81371600-81371619 None:intergenic 45.0%
TCTCCAATTTCCTCAGCACA+TGG + chr3_4:81371707-81371726 None:intergenic 45.0%
CACCAAACTGCTCTTCAATG+TGG + chr3_4:81371758-81371777 None:intergenic 45.0%
CACATTGAAGAGCAGTTTGG+TGG - chr3_4:81371756-81371775 Msa0527150:intron 45.0%
! ATTGAAGAGCAGTTTGGTGG+TGG - chr3_4:81371759-81371778 Msa0527150:intron 45.0%
! TTGAAGAGCAGTTTGGTGGT+GGG - chr3_4:81371760-81371779 Msa0527150:intron 45.0%
GAAGAAACTCCAGAGGAAGA+AGG - chr3_4:81371962-81371981 Msa0527150:intron 45.0%
CACGAAGGATTCCACTTTCA+TGG + chr3_4:81372168-81372187 None:intergenic 45.0%
! TGTGGACGGCTTTTGGATTA+TGG - chr3_4:81372218-81372237 Msa0527150:CDS 45.0%
CACATACACCTCTTTCTGCA+AGG + chr3_4:81372494-81372513 None:intergenic 45.0%
GTGTATGTGTTGCAGCCAAA+TGG - chr3_4:81372505-81372524 Msa0527150:intron 45.0%
TGTGTTGCAGCCAAATGGAT+TGG - chr3_4:81372510-81372529 Msa0527150:intron 45.0%
TGAAACAAGCTCCTAGAGCT+TGG - chr3_4:81372578-81372597 Msa0527150:intron 45.0%
AACCTCTTGTTCCAAGCTCT+AGG + chr3_4:81372592-81372611 None:intergenic 45.0%
TTGAGAAGTCTCGATGAGCA+GGG + chr3_4:81372624-81372643 None:intergenic 45.0%
GTAGATGATCTTCTGGTGAC+AGG - chr3_4:81372659-81372678 Msa0527150:intron 45.0%
GTTGCAAAAACCACGGTAGA+AGG - chr3_4:81372867-81372886 Msa0527150:intron 45.0%
! CTTCAAGTTTCCTTCTACCG+TGG + chr3_4:81372880-81372899 None:intergenic 45.0%
CTTGAAGTTGGCAAAAGGTG+AGG - chr3_4:81372893-81372912 Msa0527150:intron 45.0%
GTATCCAAAGGATCGTGTCA+TGG - chr3_4:81373076-81373095 Msa0527150:intron 45.0%
TCATGGGTTCGAGTCATGAA+GGG - chr3_4:81373093-81373112 Msa0527150:intron 45.0%
GACACCATATGAGACACCTT+AGG + chr3_4:81373178-81373197 None:intergenic 45.0%
TCTCATATGGTGTCTGCTAG+AGG - chr3_4:81373184-81373203 Msa0527150:intron 45.0%
! CAGATTGGATGGTAATGAGG+TGG - chr3_4:81373308-81373327 Msa0527150:CDS 45.0%
GTGCGCCATAACACTATAGA+TGG + chr3_4:81373862-81373881 None:intergenic 45.0%
!! TTGATGACGCAACACATCGT+TGG + chr3_4:81374294-81374313 None:intergenic 45.0%
ATGCACAAGAGACGTGAAAC+TGG - chr3_4:81375167-81375186 Msa0527150:intron 45.0%
TTTCTCACAAACACGGGGAT+TGG - chr3_4:81375802-81375821 Msa0527150:intron 45.0%
GTTACATCTAGGTACGAGCT+CGG - chr3_4:81376087-81376106 Msa0527150:intron 45.0%
!! GAAGTGGAGAGCTTTGAGAT+TGG - chr3_4:81376182-81376201 Msa0527150:intron 45.0%
TGGATACCGGTAACTTCTCA+TGG - chr3_4:81376202-81376221 Msa0527150:intron 45.0%
GGATACCGGTAACTTCTCAT+GGG - chr3_4:81376203-81376222 Msa0527150:intron 45.0%
GATACCGGTAACTTCTCATG+GGG - chr3_4:81376204-81376223 Msa0527150:intron 45.0%
ACTTCCCCATGAGAAGTTAC+CGG + chr3_4:81376211-81376230 None:intergenic 45.0%
! CAAACGAGTTTTGCGAGTGA+CGG + chr3_4:81376238-81376257 None:intergenic 45.0%
CAAAACTCGTTTGCTCGATG+TGG - chr3_4:81376245-81376264 Msa0527150:intron 45.0%
AGTTCGCACCAACTCATTGT+TGG + chr3_4:81376283-81376302 None:intergenic 45.0%
TTGCAATTTACAGGAGGCTG+AGG - chr3_4:81376877-81376896 Msa0527150:intron 45.0%
ACCAAACTGCTCCTCAATGT+GGG + chr3_4:81376981-81377000 None:intergenic 45.0%
!!! TTATTTTTACATTTTTAAAA+GGG + chr3_4:81373143-81373162 None:intergenic 5.0%
!!! TTTATTTTTACATTTTTAAA+AGG + chr3_4:81373144-81373163 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTTTTG+AGG - chr3_4:81374775-81374794 Msa0527150:intron 5.0%
!! ATAGCTTGGTGTTAGCTGGC+TGG + chr3_4:81370981-81371000 None:intergenic 50.0%
!! TGTTAAGAGCGCTATCGTGC+AGG - chr3_4:81371176-81371195 Msa0527150:three_prime_UTR 50.0%
ATGCTGCTCCATTCAAGCAG+TGG - chr3_4:81371202-81371221 Msa0527150:three_prime_UTR 50.0%
GCCCACATTGAAGAGCAGTT+TGG - chr3_4:81371753-81371772 Msa0527150:intron 50.0%
GCATGCATTTCTTCTCGACC+TGG - chr3_4:81371792-81371811 Msa0527150:intron 50.0%
TCTTCTCGACCTGGTCAATG+TGG - chr3_4:81371801-81371820 Msa0527150:intron 50.0%
CTCCTAGAGCTTGGAACAAG+AGG - chr3_4:81372587-81372606 Msa0527150:intron 50.0%
CTTGAGAAGTCTCGATGAGC+AGG + chr3_4:81372625-81372644 None:intergenic 50.0%
CTGCTCATCGAGACTTCTCA+AGG - chr3_4:81372623-81372642 Msa0527150:intron 50.0%
GAAGTTGGCAAAAGGTGAGG+AGG - chr3_4:81372896-81372915 Msa0527150:intron 50.0%
TGCTATCCGACCAACACGAA+AGG + chr3_4:81373000-81373019 None:intergenic 50.0%
GAACCCATGACACGATCCTT+TGG + chr3_4:81373083-81373102 None:intergenic 50.0%
GTCATGGGTTCGAGTCATGA+AGG - chr3_4:81373092-81373111 Msa0527150:intron 50.0%
CATGGGTTCGAGTCATGAAG+GGG - chr3_4:81373094-81373113 Msa0527150:intron 50.0%
ATGGGTTCGAGTCATGAAGG+GGG - chr3_4:81373095-81373114 Msa0527150:intron 50.0%
CTATTGCAATGCTGGACTGC+AGG - chr3_4:81373348-81373367 Msa0527150:intron 50.0%
!! TGGGCCTGTTTATGATGGGT+CGG - chr3_4:81374891-81374910 Msa0527150:intron 50.0%
TGACCCGACCCATCATAAAC+AGG + chr3_4:81374898-81374917 None:intergenic 50.0%
CAATGCGCTTCAACTAGCTC+CGG + chr3_4:81374985-81375004 None:intergenic 50.0%
CACAAGAGACGTGAAACTGG+TGG - chr3_4:81375170-81375189 Msa0527150:intron 50.0%
CTGGTGGCAAGAAGAAAGCA+TGG - chr3_4:81375186-81375205 Msa0527150:intron 50.0%
! GTGGCAAGAAGAAAGCATGG+AGG - chr3_4:81375189-81375208 Msa0527150:intron 50.0%
CAAGCAACAAGACAGTGAGG+AGG - chr3_4:81376136-81376155 Msa0527150:intron 50.0%
GTGAGGAGGATTCGTGTTAG+AGG - chr3_4:81376150-81376169 Msa0527150:intron 50.0%
AGGAGGATTCGTGTTAGAGG+TGG - chr3_4:81376153-81376172 Msa0527150:intron 50.0%
ATGCTGCTCCCTTCAAGCAA+TGG - chr3_4:81376337-81376356 Msa0527150:intron 50.0%
CATCAAGCTGGCGTTCTTTC+TGG + chr3_4:81376958-81376977 None:intergenic 50.0%
CACCAAACTGCTCCTCAATG+TGG + chr3_4:81376982-81377001 None:intergenic 50.0%
CACATTGAGGAGCAGTTTGG+TGG - chr3_4:81376980-81376999 Msa0527150:intron 50.0%
! ATTGAGGAGCAGTTTGGTGG+TGG - chr3_4:81376983-81377002 Msa0527150:intron 50.0%
GCATGCATTTCTTCACGACC+TGG - chr3_4:81377016-81377035 Msa0527150:intron 50.0%
TCTTCACGACCTGGTCAATG+CGG - chr3_4:81377025-81377044 Msa0527150:intron 50.0%
ACTCCAGAAGAAGAAGGGCA+AGG - chr3_4:81377196-81377215 Msa0527150:CDS 50.0%
CTCCAGAAGAAGAAGGGCAA+GGG - chr3_4:81377197-81377216 Msa0527150:CDS 50.0%
TGTGCTTCAGCTGATGCTGT+TGG - chr3_4:81377302-81377321 Msa0527150:CDS 50.0%
GGGGAAGTGAAGCTGTCACT+CGG - chr3_4:81371088-81371107 Msa0527150:three_prime_UTR 55.0%
AGTGCGCACAAGCTCATTGC+TGG + chr3_4:81371148-81371167 None:intergenic 55.0%
TGCCAAAAAGGACCCTGCAC+AGG - chr3_4:81371272-81371291 Msa0527150:CDS 55.0%
! CACCTGTGCAGGGTCCTTTT+TGG + chr3_4:81371277-81371296 None:intergenic 55.0%
!! CTTCAATGTGGGCATCGAGC+TGG + chr3_4:81371746-81371765 None:intergenic 55.0%
TCGACCTGGTCAATGTGGCA+GGG - chr3_4:81371806-81371825 Msa0527150:intron 55.0%
GTCAATGTGGCAGGGCTGAT+GGG - chr3_4:81371814-81371833 Msa0527150:intron 55.0%
ACTCCAGAGGAAGAAGGGCA+AGG - chr3_4:81371968-81371987 Msa0527150:intron 55.0%
CTCCAGAGGAAGAAGGGCAA+GGG - chr3_4:81371969-81371988 Msa0527150:intron 55.0%
TCAGACGTCGCCTTTCGTGT+TGG - chr3_4:81372987-81373006 Msa0527150:intron 55.0%
! ACGTCGCCTTTCGTGTTGGT+CGG - chr3_4:81372991-81373010 Msa0527150:intron 55.0%
TGGGTTCGAGTCATGAAGGG+GGG - chr3_4:81373096-81373115 Msa0527150:intron 55.0%
!! GGGCCTGTTTATGATGGGTC+GGG - chr3_4:81374892-81374911 Msa0527150:intron 55.0%
CCTCAATGTGGGCATCAAGC+TGG + chr3_4:81376970-81376989 None:intergenic 55.0%
CCAGCTTGATGCCCACATTG+AGG - chr3_4:81376967-81376986 Msa0527150:intron 55.0%
GCCCACATTGAGGAGCAGTT+TGG - chr3_4:81376977-81376996 Msa0527150:intron 55.0%
GTCAATGCGGCAGAGCTGAT+GGG - chr3_4:81377038-81377057 Msa0527150:intron 55.0%
CACCCTTGCCCTTCTTCTTC+TGG + chr3_4:81377202-81377221 None:intergenic 55.0%
CTCGACCTGGTCAATGTGGC+AGG - chr3_4:81371805-81371824 Msa0527150:intron 60.0%
TCAGCCCTGCCACATTGACC+AGG + chr3_4:81371813-81371832 None:intergenic 60.0%
GGTCAATGTGGCAGGGCTGA+TGG - chr3_4:81371813-81371832 Msa0527150:intron 60.0%
CACCCTTGCCCTTCTTCCTC+TGG + chr3_4:81371974-81371993 None:intergenic 60.0%
GTTCGAGTCATGAAGGGGGG+AGG - chr3_4:81373099-81373118 Msa0527150:intron 60.0%
! TCAGCTCTGCCGCATTGACC+AGG + chr3_4:81377037-81377056 None:intergenic 60.0%
GGTCAATGCGGCAGAGCTGA+TGG - chr3_4:81377037-81377056 Msa0527150:intron 60.0%
CGAGTCATGAAGGGGGGAGG+TGG - chr3_4:81373102-81373121 Msa0527150:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 81370946 81377536 81370946 ID=Msa0527150;Name=Msa0527150
chr3_4 mRNA 81370946 81377536 81370946 ID=Msa0527150-mRNA-1;Parent=Msa0527150;Name=Msa0527150-mRNA-1;_AED=0.15;_eAED=0.18;_QI=0|0.37|0.44|0.88|1|1|9|307|449
chr3_4 exon 81370946 81371328 81370946 ID=Msa0527150-mRNA-1:exon:24589;Parent=Msa0527150-mRNA-1
chr3_4 exon 81371423 81371592 81371423 ID=Msa0527150-mRNA-1:exon:24588;Parent=Msa0527150-mRNA-1
chr3_4 exon 81372060 81372384 81372060 ID=Msa0527150-mRNA-1:exon:24587;Parent=Msa0527150-mRNA-1
chr3_4 exon 81373260 81373332 81373260 ID=Msa0527150-mRNA-1:exon:24586;Parent=Msa0527150-mRNA-1
chr3_4 exon 81375113 81375177 81375113 ID=Msa0527150-mRNA-1:exon:24585;Parent=Msa0527150-mRNA-1
chr3_4 exon 81375573 81375630 81375573 ID=Msa0527150-mRNA-1:exon:24584;Parent=Msa0527150-mRNA-1
chr3_4 exon 81376492 81376556 81376492 ID=Msa0527150-mRNA-1:exon:24583;Parent=Msa0527150-mRNA-1
chr3_4 exon 81376647 81376816 81376647 ID=Msa0527150-mRNA-1:exon:24582;Parent=Msa0527150-mRNA-1
chr3_4 exon 81377189 81377536 81377189 ID=Msa0527150-mRNA-1:exon:24581;Parent=Msa0527150-mRNA-1
chr3_4 CDS 81377189 81377536 81377189 ID=Msa0527150-mRNA-1:cds;Parent=Msa0527150-mRNA-1
chr3_4 CDS 81376647 81376816 81376647 ID=Msa0527150-mRNA-1:cds;Parent=Msa0527150-mRNA-1
chr3_4 CDS 81376492 81376556 81376492 ID=Msa0527150-mRNA-1:cds;Parent=Msa0527150-mRNA-1
chr3_4 CDS 81375573 81375630 81375573 ID=Msa0527150-mRNA-1:cds;Parent=Msa0527150-mRNA-1
chr3_4 CDS 81375113 81375177 81375113 ID=Msa0527150-mRNA-1:cds;Parent=Msa0527150-mRNA-1
chr3_4 CDS 81373260 81373332 81373260 ID=Msa0527150-mRNA-1:cds;Parent=Msa0527150-mRNA-1
chr3_4 CDS 81372060 81372384 81372060 ID=Msa0527150-mRNA-1:cds;Parent=Msa0527150-mRNA-1
chr3_4 CDS 81371423 81371592 81371423 ID=Msa0527150-mRNA-1:cds;Parent=Msa0527150-mRNA-1
chr3_4 CDS 81371253 81371328 81371253 ID=Msa0527150-mRNA-1:cds;Parent=Msa0527150-mRNA-1
chr3_4 three_prime_UTR 81370946 81371252 81370946 ID=Msa0527150-mRNA-1:three_prime_utr;Parent=Msa0527150-mRNA-1
Gene Sequence

>Msa0527150

TTGACGGTTTCATTTAGGTATGAGCTCGGTCGCCAGCCAGCTAACACCAAGCTATCAAGCAACAAAACAGTGAGGAGTATTCGTGTTAGAGGTGGCAATTTGAAATGTAGAGCTTTGAGATTGGATACTGGAAACATCTCATGGGGAAGTGAAGCTGTCACTCGGAAAACCCGTTTGCTAAATGTGGTTTACAATGCTTCCAGCAATGAGCTTGTGCGCACTCAGACTCTTGTTAAGAGCGCTATCGTGCAGGTCGATGCTGCTCCATTCAAGCAGTGGTACCTTCAACACTATGGTGTTGAAATTGGTAACAAAAAGAAAATTGCTGCCAAAAAGGACCCTGCACAGGAGGCTGAAGCTGCTACAGAAGAAACCAAAAAGAGTAACCATGTGCTGAGGAAATTGGAGAATCGCGAGAAAGATCGCCAGCTCGATGCCCACATTGAAGAGCAGTTTGGTGGTGGGCGATTACTTGCATGCATTTCTTCTCGACCTGGTCAATGTGGCAGGGCTGATGGCTACATTTTGGAAGGTAAGGAGTTAGAATTCTACATGAAGAAACTCCAGAGGAAGAAGGGCAAGGATGGAAAGCTGCAATGTTGCAAAAACCACGGTAGAAGGAAACTTGAAGTTGGCAAAAGACTCAGATTGGATGGTAATGAGGTGGAAAGAAAGAGTACTGATCTATTGCAATGCTGGACTGCAGGTATTTCACGAGATTCTATGCACAAGAGACGTGAAACTGGTGGCAAGAAGAAAGCATGGAGGAAGAAGAGAAAGTACGAGCTCGGTCGCCAGCCAGCTAACACAAAACTATCAAGCAACAAGACAGTGAGGAGGATTCGTGTTAGAGGTGGAAATGTGAAGTGGAGAGCTTTGAGATTGGATACCGGTAACTTCTCATGGGGAAGTGAAGCCGTCACTCGCAAAACTCGTTTGCTCGATGTGGTGTACAATGCTTCCAACAATGAGTTGGTGCGAACTCAGACTCTTGTGAAGAGTGCTATTGTTCAGGTTGATGCTGCTCCCTTCAAGCAATGGTACCTTCAACACTATGGTGTTGATATTGGTAGAAAGAAGAAAAATGTTAGCAAGAAAGAGGAGGAGGCTGAGGCTGCTACAGAAGAAGTCAAAAAGAGTGCCCATGTGCAGAGAAAATTAGAGCAACGCCAGAAAGAACGCCAGCTTGATGCCCACATTGAGGAGCAGTTTGGTGGTGGACGATTGCTTGCATGCATTTCTTCACGACCTGGTCAATGCGGCAGAGCTGATGGCTACATTCTTGAAGGTAAGGAGCTAGAATTCTACATGAAGAAACTCCAGAAGAAGAAGGGCAAGGGTGCCGCTTGA

Protein sequence

>Msa0527150

LTVSFRYELGRQPANTKLSSNKTVRSIRVRGGNLKCRALRLDTGNISWGSEAVTRKTRLLNVVYNASSNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGNKKKIAAKKDPAQEAEAATEETKKSNHVLRKLENREKDRQLDAHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKDGKLQCCKNHGRRKLEVGKRLRLDGNEVERKSTDLLQCWTAGISRDSMHKRRETGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKNVSKKEEEAEAATEEVKKSAHVQRKLEQRQKERQLDAHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAA*