AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0888820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0888820 MtrunA17_Chr6g0470571 95.298 957 35 2 1 947 1 957 0.0 1819
Msa0888820 MtrunA17_Chr5g0422381 32.143 392 250 5 425 805 154 540 1.40e-53 196
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0888820 AT5G23890.1 46.302 987 441 26 1 941 1 944 0.0 720
Msa0888820 AT5G23890.2 47.203 858 374 21 125 941 1 820 0.0 662
Msa0888820 AT5G52410.3 56.066 544 224 4 410 944 215 752 0.0 572
Msa0888820 AT5G52410.3 35.772 123 59 5 1 117 1 109 5.76e-11 67.0
Msa0888820 AT5G52410.2 56.066 544 224 4 410 944 224 761 0.0 571
Msa0888820 AT5G52410.2 35.772 123 59 5 1 117 1 109 6.83e-11 67.0
Msa0888820 AT5G52410.1 57.002 507 182 5 442 916 2 504 0.0 549
Msa0888820 AT3G25680.1 34.190 389 240 4 427 805 171 553 1.02e-56 206

Find 234 sgRNAs with CRISPR-Local

Find 613 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCTTCGCTTAAAATCTT+AGG 0.129669 6_1:+54187906 None:intergenic
CAGATGCTGCACCGACTTTC+TGG 0.137059 6_1:-54184997 Msa0888820:CDS
TACTGGCTTACCATCATAAT+TGG 0.190822 6_1:+54188082 None:intergenic
AAGATTCCTTCTTCTTCTTC+TGG 0.201471 6_1:+54190539 None:intergenic
ATTTCTGAATCTCCAAATTC+TGG 0.205362 6_1:-54187726 Msa0888820:CDS
CTAGTAGCTGATCTTTCTTC+TGG 0.206191 6_1:-54184931 Msa0888820:CDS
AAATTACAGGCTGAAGAATT+TGG 0.211510 6_1:-54182750 Msa0888820:CDS
TCTTCTTCCCTCTCTCTTCA+TGG 0.214615 6_1:-54190800 Msa0888820:exon
TAACTTTCCATAACTGTCTT+TGG 0.218158 6_1:-54182425 Msa0888820:three_prime_UTR
AGTAGTTTCTGCAGCTTTAC+AGG 0.219788 6_1:-54187667 Msa0888820:CDS
CATCCTGCTGCTCATTATTA+AGG 0.228977 6_1:+54188057 None:intergenic
CAGCATAGTGCCGTCGAATT+TGG 0.233489 6_1:-54182684 Msa0888820:CDS
AGAATACTGATTTACTTAAA+TGG 0.240941 6_1:+54187814 None:intergenic
TCTTCTGATGCCGATATTAC+AGG 0.260713 6_1:-54188503 Msa0888820:CDS
GAGAAAAGGGATCCAGAATT+TGG 0.266196 6_1:+54187714 None:intergenic
TCACCAAGAACATACCTTTC+AGG 0.266855 6_1:+54185402 None:intergenic
TGAACTTATGAGCGAACTTT+TGG 0.268578 6_1:+54182595 None:intergenic
TTTCTGGTTCAGCATTAAAT+TGG 0.274007 6_1:+54188111 None:intergenic
TGACAGGGCTGAAAGATTAT+TGG 0.279871 6_1:-54182889 Msa0888820:CDS
CTTTCAGGGGAGAAGTAAAA+AGG 0.280105 6_1:+54185417 None:intergenic
GTTGTGGGAGTAGGGGTTGC+TGG 0.282329 6_1:-54188757 Msa0888820:CDS
AAGAAGAAGAAGGAATCTTT+TGG 0.292775 6_1:-54190535 Msa0888820:CDS
ACAAGATCCTGGCGCGATAA+AGG 0.293222 6_1:+54185165 None:intergenic
TTTCAGTTTGAAGTGGTATT+TGG 0.300010 6_1:+54188213 None:intergenic
AACTCAGTAAACTACATTTC+TGG 0.304967 6_1:+54182507 None:intergenic
GGTTGGTCCGATTCAGCAAC+TGG 0.306448 6_1:-54190580 Msa0888820:CDS
ATGGGTCGGGTCTGATTCTA+AGG 0.309439 6_1:-54190617 Msa0888820:CDS
TCCAAGAGATAAGGCAAAAT+AGG 0.322176 6_1:+54188711 None:intergenic
GGATCTTGTCAGCTGGAAAA+TGG 0.323426 6_1:-54185151 Msa0888820:CDS
GGAGCAAGAAAATGGTAAAT+TGG 0.328498 6_1:-54188456 Msa0888820:CDS
GCAACCTTTCTGTCAGCTTC+AGG 0.332101 6_1:+54185108 None:intergenic
GGAATAATTGCTCTTGCATT+TGG 0.338900 6_1:-54184901 Msa0888820:intron
TGCTTGTTCTCTCACTCGTT+TGG 0.340913 6_1:+54183049 None:intergenic
TCCAAAACCTCATCTGGTTT+AGG 0.343552 6_1:-54187996 Msa0888820:CDS
CCTCTAGATCATACTGTAAA+CGG 0.344200 6_1:+54184237 None:intergenic
ACTATTGATGATTCTGATAT+AGG 0.344484 6_1:-54188365 Msa0888820:CDS
GATATTTCCAAAACCTCATC+TGG 0.348534 6_1:-54188002 Msa0888820:CDS
GGCCTCCAAAACAAAATTAC+AGG 0.351209 6_1:-54182763 Msa0888820:CDS
ATTTACTTGTCCTGTAATAT+CGG 0.352628 6_1:+54188493 None:intergenic
GCAGGAATCAAAACCTTTCC+TGG 0.353974 6_1:+54187639 None:intergenic
TTCTAAGGGTGATGGGTTAT+CGG 0.356171 6_1:-54190602 Msa0888820:CDS
AACAAGTTGGAGCAAGAAAA+TGG 0.356887 6_1:-54188464 Msa0888820:CDS
CCAATTTATATCAAAATTGA+AGG 0.360066 6_1:-54182790 Msa0888820:CDS
CTGATCATCCAATGATGAAT+TGG 0.361575 6_1:+54187782 None:intergenic
CAAAAGCTCCTGTTCATAAC+TGG 0.363297 6_1:+54184532 None:intergenic
TTACTTAAATGGTCATTTCC+AGG 0.366462 6_1:+54187825 None:intergenic
ACCTAAACCAGATGAGGTTT+TGG 0.372911 6_1:+54187995 None:intergenic
CTTTCAGGAGTTGTGGGAGT+AGG 0.374319 6_1:-54188766 Msa0888820:intron
CAATTCATCATTGGATGATC+AGG 0.375403 6_1:-54187781 Msa0888820:CDS
GAAGGTACAAAGCGAGTTGC+TGG 0.388206 6_1:-54182648 Msa0888820:CDS
ATTTCTAATCTCACTTGAAC+TGG 0.390712 6_1:+54188028 None:intergenic
TTTCCAGGCTTGGCAGAAGC+TGG 0.396329 6_1:-54185501 Msa0888820:intron
ACCATTGACCAATTCATCAT+TGG 0.396474 6_1:-54187790 Msa0888820:CDS
AGCAAGGGCAATAGCGGCTT+GGG 0.396547 6_1:+54184676 None:intergenic
TTATCTCTTGGAAAACGAAA+TGG 0.397448 6_1:-54188700 Msa0888820:CDS
GCCGCTATTGCCCTTGCTAC+TGG 0.401253 6_1:-54184671 Msa0888820:CDS
AAGAGAGGATCAAGAAGCTT+CGG 0.401995 6_1:-54184292 Msa0888820:CDS
TTTCAGGAGTTGTGGGAGTA+GGG 0.407739 6_1:-54188765 Msa0888820:intron
CTGCTAGCGGTGCTCTTTCA+AGG 0.412353 6_1:-54185821 Msa0888820:intron
AAAGTTAAGGAATGAGGTTC+AGG 0.412432 6_1:-54184363 Msa0888820:CDS
TAGTAGCTGATCTTTCTTCT+GGG 0.414299 6_1:-54184930 Msa0888820:CDS
TGATCTTTCTTCTGGGGAGC+AGG 0.415092 6_1:-54184923 Msa0888820:CDS
CAACTCAAGGGTCAGTTGAC+AGG 0.415518 6_1:-54182905 Msa0888820:CDS
AGAACAAGCAAGAGCATTAG+AGG 0.416242 6_1:-54183036 Msa0888820:CDS
GAAAGATCAGCTACTAGTGC+AGG 0.416302 6_1:+54184937 None:intergenic
GAAGATGATCAAGACAATAT+TGG 0.419569 6_1:-54187891 Msa0888820:CDS
AATGACACAGCCTCTGTGTC+TGG 0.422921 6_1:+54182456 None:intergenic
AGATTCCTTCTTCTTCTTCT+GGG 0.423936 6_1:+54190540 None:intergenic
ACGCCAAGGCCGGCTCTGAA+TGG 0.424465 6_1:-54190636 Msa0888820:CDS
CCTGAGTCCGATATCATTCA+AGG 0.424789 6_1:-54188398 Msa0888820:CDS
TATATCAAAATTGAAGGAAT+GGG 0.425466 6_1:-54182784 Msa0888820:CDS
CAGTGACCCAGTTGCTGAAT+CGG 0.427895 6_1:+54190573 None:intergenic
CATCTTCGCTTAAAATCTTA+GGG 0.430588 6_1:+54187907 None:intergenic
ATAGTCACCTTGAATGATAT+CGG 0.431306 6_1:+54188391 None:intergenic
GTGTCTGGTGTCTCTATTGA+AGG 0.431733 6_1:+54182471 None:intergenic
AGAAGAAGACAGTGTTGCCT+TGG 0.434500 6_1:-54184429 Msa0888820:CDS
GACCCATTCAGAGCCGGCCT+TGG 0.436320 6_1:+54190633 None:intergenic
AGAGGAGGCTAGAGATCGTT+GGG 0.438647 6_1:-54183018 Msa0888820:CDS
ACTAGTGCAGGGCATGCATT+AGG 0.440026 6_1:+54184949 None:intergenic
GAAGTTACATGGCTCAATGC+TGG 0.440097 6_1:-54182939 Msa0888820:CDS
TGCTCATTATTAAGGTCTAC+TGG 0.440726 6_1:+54188065 None:intergenic
TGGTGGGGTTGAAGGCTAAT+CGG 0.442642 6_1:+54190737 None:intergenic
CGCCAAGGCCGGCTCTGAAT+GGG 0.442924 6_1:-54190635 Msa0888820:CDS
TGTCAAGTTCTGACCTTGAA+TGG 0.445130 6_1:+54185588 None:intergenic
CCGAACAAATATCTCTCTCT+TGG 0.446159 6_1:-54190879 Msa0888820:five_prime_UTR
CGATTCAGCAACTGGGTCAC+TGG 0.449043 6_1:-54190572 Msa0888820:CDS
TGGCCTTAACAAAACTCAAC+AGG 0.451309 6_1:-54187871 Msa0888820:CDS
CTGCAGCCCTTTATCGCGCC+AGG 0.451648 6_1:-54185172 Msa0888820:intron
TCTAAGGGTGATGGGTTATC+GGG 0.452141 6_1:-54190601 Msa0888820:CDS
AGCGAGTTGCTGGTGATTGT+AGG 0.453284 6_1:-54182638 Msa0888820:CDS
AGACACAGAGGCTGTGTCAT+TGG 0.455512 6_1:-54182454 Msa0888820:three_prime_UTR
CTCTAGATCATACTGTAAAC+GGG 0.455789 6_1:+54184238 None:intergenic
TGCGGCTATTGAATCAGAAA+TGG 0.457851 6_1:-54184396 Msa0888820:CDS
TAGCAAGGGCAATAGCGGCT+TGG 0.459860 6_1:+54184675 None:intergenic
AAATCACCAGGTTGAACATC+AGG 0.461055 6_1:+54185879 None:intergenic
TATTAATGCCAGTTATGAAC+AGG 0.463586 6_1:-54184540 Msa0888820:CDS
GAATGCCAGGAGCAGAGAAA+AGG 0.464135 6_1:+54187700 None:intergenic
CACCAAGAACATACCTTTCA+GGG 0.466229 6_1:+54185403 None:intergenic
AGAGAGGATCAAGAAGCTTC+GGG 0.466699 6_1:-54184291 Msa0888820:CDS
ACTGATAGCAATTGTAATTG+AGG 0.468930 6_1:-54182355 Msa0888820:three_prime_UTR
TTATATCAAAATTGAAGGAA+TGG 0.469067 6_1:-54182785 Msa0888820:CDS
AGGCCGGCTCTGAATGGGTC+GGG 0.471957 6_1:-54190630 Msa0888820:CDS
TGACTTGCCTGCCTTTGAGA+TGG 0.477195 6_1:+54182719 None:intergenic
GAAATTGTGTTGTTTGACTC+AGG 0.477685 6_1:+54187933 None:intergenic
TGATCATCCAAAGACAGTTA+TGG 0.481315 6_1:+54182418 None:intergenic
TAGTTTGCTTTCAGGAGTTG+TGG 0.483993 6_1:-54188773 Msa0888820:intron
AGTGGCATCATTGATACCAT+TGG 0.492279 6_1:+54188310 None:intergenic
AGTAGATTAAAGATGCTGTA+GGG 0.494993 6_1:+54182551 None:intergenic
AAGTTACATGGCTCAATGCT+GGG 0.495523 6_1:-54182938 Msa0888820:CDS
TTTGGATTAACTGTAAAAGA+AGG 0.497057 6_1:-54182666 Msa0888820:CDS
ACTGATGGAGCAGGAATGCC+AGG 0.497805 6_1:+54187687 None:intergenic
GGGTCTGATTCTAAGGGTGA+TGG 0.500951 6_1:-54190610 Msa0888820:CDS
AACTCAACAGGTCTTATATG+AGG 0.501563 6_1:-54187859 Msa0888820:CDS
ACTGGCTTACCATCATAATT+GGG 0.503200 6_1:+54188083 None:intergenic
AATGCCAGGAGCAGAGAAAA+GGG 0.505227 6_1:+54187701 None:intergenic
GAAGCCTTTGACAACACATC+AGG 0.506026 6_1:-54188537 Msa0888820:CDS
TACTTAAATGGTCATTTCCA+GGG 0.506950 6_1:+54187826 None:intergenic
TGCTGACATTTGAGTAATAA+CGG 0.507420 6_1:+54182301 None:intergenic
AGACCTTAATAATGAGCAGC+AGG 0.511809 6_1:-54188060 Msa0888820:CDS
TAGAGGAGGCTAGAGATCGT+TGG 0.514166 6_1:-54183019 Msa0888820:CDS
TATGAGGAACAGAGTATCCC+TGG 0.516671 6_1:-54187843 Msa0888820:CDS
AGTTTGCTTTCAGGAGTTGT+GGG 0.517953 6_1:-54188772 Msa0888820:intron
TTCAGGAGTTGTGGGAGTAG+GGG 0.518321 6_1:-54188764 Msa0888820:intron
TGGAATCAGGACTTGGGCAG+AGG 0.518677 6_1:-54183078 Msa0888820:intron
TACAGTTAATCCAAATTCGA+CGG 0.518733 6_1:+54182674 None:intergenic
TGAACCTGATCAAAAGCTGC+AGG 0.521188 6_1:+54187621 None:intergenic
AGGCTTCAGCCGAAGTTACA+TGG 0.522394 6_1:-54182950 Msa0888820:CDS
TGACAGGAGAAAGTACTTCA+AGG 0.522750 6_1:+54182214 None:intergenic
GATCTTTCTTCTGGGGAGCA+GGG 0.527714 6_1:-54184922 Msa0888820:CDS
TTGGAGAAGCTCAAACGAAT+GGG 0.531288 6_1:-54182870 Msa0888820:CDS
GCGAGTTGCTGGTGATTGTA+GGG 0.532203 6_1:-54182637 Msa0888820:CDS
TTTACAGGTGCCTCCAGGAA+AGG 0.532486 6_1:-54187652 Msa0888820:CDS
TAGTAGATTAAAGATGCTGT+AGG 0.534740 6_1:+54182550 None:intergenic
AGTCTGACGTGATGAGAAAG+AGG 0.539581 6_1:+54190709 None:intergenic
AACTCAAGGGTCAGTTGACA+GGG 0.540042 6_1:-54182904 Msa0888820:CDS
GCAGCTTTACAGGTGCCTCC+AGG 0.540450 6_1:-54187657 Msa0888820:CDS
AAGCTGGACTTATTGAAAGC+AGG 0.543112 6_1:-54185485 Msa0888820:CDS
AGATTAAAGATGCTGTAGGG+GGG 0.544852 6_1:+54182554 None:intergenic
CGCTGGTTGGTATCTGCTAG+CGG 0.545213 6_1:-54185834 Msa0888820:CDS
GGCAAATGTTGAATTACAGC+AGG 0.546509 6_1:+54182322 None:intergenic
GCCGGCCTTGGCGTTATGCA+CGG 0.546961 6_1:+54190645 None:intergenic
TGAAGAGGCAAAACATGAGT+TGG 0.547136 6_1:-54184471 Msa0888820:CDS
ATTGGAGAAGCTCAAACGAA+TGG 0.547210 6_1:-54182871 Msa0888820:CDS
CTTGTTGCATGAGTCAGCTC+GGG 0.547834 6_1:-54188264 Msa0888820:CDS
GAAAAGCCTTGTCCATGGCC+AGG 0.548184 6_1:-54184208 Msa0888820:intron
GAAAACATACCCAATTATGA+TGG 0.549370 6_1:-54188092 Msa0888820:CDS
GCATTATCTATGTACATGGC+AGG 0.549375 6_1:+54185661 None:intergenic
TAAGGCAAAATAGGTAAGCC+CGG 0.551085 6_1:+54188720 None:intergenic
CCGTTTACAGTATGATCTAG+AGG 0.551417 6_1:-54184237 Msa0888820:CDS
CAAACAATAACAGATTTGAT+AGG 0.553612 6_1:-54182247 Msa0888820:three_prime_UTR
GCTTCCTGAAGCTGACAGAA+AGG 0.553773 6_1:-54185112 Msa0888820:intron
GGGGAGCAGTACTCAACTCA+AGG 0.554003 6_1:-54182918 Msa0888820:CDS
ACCTCCTGATGTGTTGTCAA+AGG 0.557320 6_1:+54188533 None:intergenic
CAAGAAAATGGTAAATTGGA+AGG 0.558455 6_1:-54188452 Msa0888820:CDS
GAAGCTGCCATCTCAAAGGC+AGG 0.560559 6_1:-54182726 Msa0888820:CDS
ACTTGTTGCATGAGTCAGCT+CGG 0.560612 6_1:-54188265 Msa0888820:CDS
GATTAAAGATGCTGTAGGGG+GGG 0.563000 6_1:+54182555 None:intergenic
AAGGCCGGCTCTGAATGGGT+CGG 0.563902 6_1:-54190631 Msa0888820:CDS
ACTCAGGAGATGAATAATCC+CGG 0.564022 6_1:+54188414 None:intergenic
TCCAATGATGAATTGGTCAA+TGG 0.565254 6_1:+54187789 None:intergenic
AGACCCGACCCATTCAGAGC+CGG 0.565507 6_1:+54190627 None:intergenic
AGCATTGAGCCATGTAACTT+CGG 0.566469 6_1:+54182941 None:intergenic
TTCTGATATAGGATCGGAGT+TGG 0.568382 6_1:-54188354 Msa0888820:CDS
GGCATCATTGATACCATTGG+AGG 0.569021 6_1:+54188313 None:intergenic
CGACGTGTGCATAAATCACC+AGG 0.569114 6_1:+54185867 None:intergenic
GCAGAAACTACTGATGGAGC+AGG 0.569460 6_1:+54187678 None:intergenic
TCGTGAATATGCTCGCTGGT+TGG 0.572821 6_1:-54185847 Msa0888820:CDS
AAGGTCAGATAGATACATCC+CGG 0.576945 6_1:-54188433 Msa0888820:CDS
CCAAGAGAGAGATATTTGTT+CGG 0.577722 6_1:+54190879 None:intergenic
CAGAAGCATCTCCAGTAGCA+AGG 0.578725 6_1:+54184660 None:intergenic
AATCGGAGTTGAAGAGATGT+TGG 0.578908 6_1:+54190754 None:intergenic
TAGATTAAAGATGCTGTAGG+GGG 0.579358 6_1:+54182553 None:intergenic
GGCACTATGCTGTAACTCGT+GGG 0.579849 6_1:+54182695 None:intergenic
CTCAGGAGATGAATAATCCC+GGG 0.581010 6_1:+54188415 None:intergenic
CAAAGAAGTGGTGGAAGACG+AGG 0.581587 6_1:+54190670 None:intergenic
AGCCGCACGTTCTTTCTCCA+AGG 0.583452 6_1:+54184412 None:intergenic
AGTAAATGCTGAGAACAAGT+TGG 0.583946 6_1:-54188477 Msa0888820:CDS
TCCAGTAGCAAGGGCAATAG+CGG 0.586351 6_1:+54184670 None:intergenic
GTAGATTAAAGATGCTGTAG+GGG 0.586540 6_1:+54182552 None:intergenic
AGGGTGATGGGTTATCGGGT+TGG 0.586727 6_1:-54190597 Msa0888820:CDS
TGATTCCCAGAAGAAGAAGA+AGG 0.587923 6_1:-54190545 Msa0888820:CDS
AGTAGCTGATCTTTCTTCTG+GGG 0.590948 6_1:-54184929 Msa0888820:CDS
TTGAACAGATATATATTCAG+TGG 0.591238 6_1:+54188292 None:intergenic
GTTGCTGGTGATTGTAGGGA+AGG 0.591411 6_1:-54182633 Msa0888820:CDS
TTGCTCCGTGCATAACGCCA+AGG 0.591537 6_1:-54190650 Msa0888820:CDS
GGTCTGATTCTAAGGGTGAT+GGG 0.592109 6_1:-54190609 Msa0888820:CDS
ATCAGCACCTAAACCAGATG+AGG 0.597185 6_1:+54187989 None:intergenic
AATTGACAAGATCATCCTCA+TGG 0.597415 6_1:-54182817 Msa0888820:CDS
GTCTGACGTGATGAGAAAGA+GGG 0.599108 6_1:+54190710 None:intergenic
AGTAGCATTATCTATGTACA+TGG 0.600902 6_1:+54185657 None:intergenic
AGAAGCATCTCCAGTAGCAA+GGG 0.602025 6_1:+54184661 None:intergenic
TGTCTATAAAACCAGAAAGT+CGG 0.602692 6_1:+54184986 None:intergenic
CGGCTGAAGCCTCCTTGCGG+AGG 0.602998 6_1:+54182961 None:intergenic
TGAACGAAAAGCCTTGTCCA+TGG 0.606463 6_1:-54184213 Msa0888820:CDS
GTTGGTCCGATTCAGCAACT+GGG 0.606734 6_1:-54190579 Msa0888820:CDS
TGGAGAAGCTGCCATCTCAA+AGG 0.608787 6_1:-54182730 Msa0888820:CDS
TGCACGGAGCAAAGAAGTGG+TGG 0.608863 6_1:+54190661 None:intergenic
TGATGATTCTGATATAGGAT+CGG 0.610207 6_1:-54188360 Msa0888820:CDS
ATTGTTTGGAATCAGGACTT+GGG 0.610422 6_1:-54183084 Msa0888820:intron
AAGAGATGTTGGTGAACATG+TGG 0.611282 6_1:+54190765 None:intergenic
GCCTTTGACAACACATCAGG+AGG 0.619924 6_1:-54188534 Msa0888820:CDS
CCTTGAATGATATCGGACTC+AGG 0.624837 6_1:+54188398 None:intergenic
AAAGCTGCAGAAACTACTGA+TGG 0.625334 6_1:+54187672 None:intergenic
GGCTATTGAATCAGAAATGG+AGG 0.628296 6_1:-54184393 Msa0888820:CDS
AGTTACATGGCTCAATGCTG+GGG 0.628725 6_1:-54182937 Msa0888820:CDS
AGAGATGTTGGTGAACATGT+GGG 0.631272 6_1:+54190766 None:intergenic
ATATAAATTGGGAAACCATG+AGG 0.631489 6_1:+54182802 None:intergenic
AGGTCAGATAGATACATCCC+GGG 0.632359 6_1:-54188432 Msa0888820:CDS
ATTGAAGCCATGAAGAGAGA+GGG 0.636483 6_1:+54190793 None:intergenic
CACGTCGTGAATATGCTCGC+TGG 0.643178 6_1:-54185851 Msa0888820:CDS
ATTGAGCCTGATGTTCAACC+TGG 0.648300 6_1:-54185885 Msa0888820:CDS
AAAGATCAGCTACTAGTGCA+GGG 0.652793 6_1:+54184938 None:intergenic
TGGGTCGGGTCTGATTCTAA+GGG 0.653419 6_1:-54190616 Msa0888820:CDS
AATTGAAGCCATGAAGAGAG+AGG 0.654227 6_1:+54190792 None:intergenic
TTATGCACGGAGCAAAGAAG+TGG 0.654806 6_1:+54190658 None:intergenic
CTTCGGCTGAAGCCTCCTTG+CGG 0.664983 6_1:+54182958 None:intergenic
ACCAAGAACATACCTTTCAG+GGG 0.665184 6_1:+54185404 None:intergenic
TCTGACGTGATGAGAAAGAG+GGG 0.665582 6_1:+54190711 None:intergenic
GACTGAAACTGTTAGTACTG+TGG 0.666312 6_1:-54187961 Msa0888820:CDS
TGCCTTGGAGAAAGAACGTG+CGG 0.673296 6_1:-54184414 Msa0888820:CDS
GGAGAGACACGGAATCAAAG+TGG 0.674644 6_1:-54182997 Msa0888820:CDS
ACAAGCAAGAGCATTAGAGG+AGG 0.676263 6_1:-54183033 Msa0888820:CDS
GGTGTCTCTATTGAAGGACA+AGG 0.676523 6_1:+54182477 None:intergenic
AGAGATCGTTGGGAGAGACA+CGG 0.678075 6_1:-54183008 Msa0888820:CDS
GAAGTGGTGGAAGACGAGGT+TGG 0.681051 6_1:+54190674 None:intergenic
GGGAGCAGTACTCAACTCAA+GGG 0.682992 6_1:-54182917 Msa0888820:CDS
ACAAAGTCTAATGAGTAACA+AGG 0.685125 6_1:-54184333 Msa0888820:CDS
GAGACACGGAATCAAAGTGG+TGG 0.696553 6_1:-54182994 Msa0888820:CDS
CTGACGTGATGAGAAAGAGG+GGG 0.713118 6_1:+54190712 None:intergenic
ATTTGATGACATCACCCCTG+AGG 0.716657 6_1:-54185626 Msa0888820:CDS
AATAGAGACACCAGACACAG+AGG 0.718828 6_1:-54182466 Msa0888820:three_prime_UTR
GGAATCAAAACCTTTCCTGG+AGG 0.723513 6_1:+54187642 None:intergenic
TGACGAAGACCTCCGCAAGG+AGG 0.731713 6_1:-54182970 Msa0888820:CDS
CGAATGGGTGCAGATCTCAG+AGG 0.766959 6_1:-54182855 Msa0888820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATTTGTGTTTTTTTAT+TGG - chr6_1:54182642-54182661 Msa0888820:CDS 10.0%
!!! TATTTTTTTTAACTTCTTAA+AGG - chr6_1:54183556-54183575 Msa0888820:intron 10.0%
!!! ACAAAAATTAACTTTAAAAT+AGG - chr6_1:54184048-54184067 Msa0888820:intron 10.0%
!!! CAAAAATTAACTTTAAAATA+GGG - chr6_1:54184049-54184068 Msa0888820:intron 10.0%
!!! ACAATATTTAGTAAATTTTT+GGG + chr6_1:54186065-54186084 None:intergenic 10.0%
!! AAAATAAAAATAAAGCTAAA+TGG + chr6_1:54186228-54186247 None:intergenic 10.0%
!!! TCATTAACTTTATTTAATAA+GGG + chr6_1:54186512-54186531 None:intergenic 10.0%
!!! ATCATTAACTTTATTTAATA+AGG + chr6_1:54186513-54186532 None:intergenic 10.0%
!!! TAATAAATTTTGAGTATTTT+AGG - chr6_1:54187030-54187049 Msa0888820:intron 10.0%
!!! TATATTTAAAACATTTATTC+TGG + chr6_1:54189979-54189998 None:intergenic 10.0%
!! TTAAATATATGTTAATTGTT+TGG - chr6_1:54189990-54190009 Msa0888820:intron 10.0%
!! TATTAGACAATACAATAATA+AGG + chr6_1:54183526-54183545 None:intergenic 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG + chr6_1:54184080-54184099 None:intergenic 15.0%
!!! TATGAGTTTACTTTAAAATA+GGG + chr6_1:54183796-54183815 None:intergenic 15.0%
!!! ATATGAGTTTACTTTAAAAT+AGG + chr6_1:54183797-54183816 None:intergenic 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG - chr6_1:54184080-54184099 Msa0888820:intron 15.0%
!!! AAAAAGTTGGTATATTTATA+GGG - chr6_1:54184140-54184159 Msa0888820:intron 15.0%
!!! ATTTGATAATATTGAATCTA+GGG + chr6_1:54184183-54184202 None:intergenic 15.0%
!!! CATTTACTATTATTTTTAAC+AGG - chr6_1:54185580-54185599 Msa0888820:intron 15.0%
!!! CACAATATTTAGTAAATTTT+TGG + chr6_1:54186066-54186085 None:intergenic 15.0%
!!! AATTATCTTTTATATAATGG+TGG + chr6_1:54186638-54186657 None:intergenic 15.0%
!! AATATATTTATCGAATCTAA+TGG - chr6_1:54188068-54188087 Msa0888820:CDS 15.0%
!!! TAAAATCATGAAACTTTTAA+AGG - chr6_1:54188903-54188922 Msa0888820:intron 15.0%
!!! TACTTTATTATTTCTCTAAT+TGG + chr6_1:54189394-54189413 None:intergenic 15.0%
!! AATATGAAAAACAAAATAAG+TGG - chr6_1:54189561-54189580 Msa0888820:intron 15.0%
!! AATATGAAAAACAAAATAAG+TGG - chr6_1:54189561-54189580 Msa0888820:intron 15.0%
!!! CTTCAATTTTGATATAAATT+GGG + chr6_1:54190300-54190319 None:intergenic 15.0%
!!! TCACTTTTTTAAATTGTTAG+TGG - chr6_1:54182880-54182899 Msa0888820:CDS 20.0%
!!! TTTTTGTTACTCTTGTATAT+TGG - chr6_1:54182933-54182952 Msa0888820:CDS 20.0%
!!! AATTGAACTTGATTTTAACT+TGG - chr6_1:54183640-54183659 Msa0888820:intron 20.0%
!! GTTATTACTATTAGATTCAA+GGG - chr6_1:54183662-54183681 Msa0888820:intron 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG + chr6_1:54183705-54183724 None:intergenic 20.0%
!!! TGAAAAGTTGGTATATTTAT+AGG + chr6_1:54183706-54183725 None:intergenic 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG + chr6_1:54184079-54184098 None:intergenic 20.0%
!!! AAATTTTCAATCACTACTTT+TGG - chr6_1:54183769-54183788 Msa0888820:intron 20.0%
!!! AAATTTTCAATCACTACTTT+TGG + chr6_1:54183769-54183788 None:intergenic 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG - chr6_1:54184079-54184098 Msa0888820:intron 20.0%
!!! CAAAAAGTTGGTATATTTAT+AGG - chr6_1:54184139-54184158 Msa0888820:intron 20.0%
!!! GATTTGATAATATTGAATCT+AGG + chr6_1:54184184-54184203 None:intergenic 20.0%
!!! AAAAGTGTTATTAATTAGTG+TGG + chr6_1:54184291-54184310 None:intergenic 20.0%
!!! AAATTGGTTTTCTTTAAGAT+AGG + chr6_1:54184964-54184983 None:intergenic 20.0%
!!! AGAATACTGATTTACTTAAA+TGG + chr6_1:54185277-54185296 None:intergenic 20.0%
!!! TTTAAGTTCTATTGAAAACT+TGG + chr6_1:54185680-54185699 None:intergenic 20.0%
!! AAATAAGACCTCTTAAAATT+TGG - chr6_1:54185697-54185716 Msa0888820:intron 20.0%
!! AATAAGACCTCTTAAAATTT+GGG - chr6_1:54185698-54185717 Msa0888820:intron 20.0%
!! TGAAAATAGTTTATAAAGAG+TGG + chr6_1:54185971-54185990 None:intergenic 20.0%
!! TTAAACTTGAGCTATATATT+TGG - chr6_1:54186091-54186110 Msa0888820:intron 20.0%
!!! ATTAATTTCAGTTGTTTTCA+AGG + chr6_1:54186201-54186220 None:intergenic 20.0%
!!! ATTTTTATTGAAGGAATAGT+AGG - chr6_1:54186243-54186262 Msa0888820:intron 20.0%
!! AGTTATGAGTTATAGATAAA+AGG - chr6_1:54186335-54186354 Msa0888820:intron 20.0%
!!! TGAAGATTGTTTCTTATAAA+AGG + chr6_1:54186453-54186472 None:intergenic 20.0%
!!! TTATTTAATAAGGGTATACA+TGG + chr6_1:54186503-54186522 None:intergenic 20.0%
!!! TAATCTCCTTATTTAGAATT+AGG + chr6_1:54186838-54186857 None:intergenic 20.0%
!! TTAAATGACATAATTTGAGA+CGG + chr6_1:54186911-54186930 None:intergenic 20.0%
!! ATACTCAAAATTTATTAGAG+TGG + chr6_1:54187027-54187046 None:intergenic 20.0%
!!! TTTTCTACACATGTAATATT+TGG - chr6_1:54187351-54187370 Msa0888820:intron 20.0%
!! ATATTCTTCAGATAACATAA+TGG + chr6_1:54187564-54187583 None:intergenic 20.0%
!! AGAAATTAACATATGAGATA+GGG + chr6_1:54187898-54187917 None:intergenic 20.0%
!!! AATTTTGGTTTGATATATCT+TGG - chr6_1:54188953-54188972 Msa0888820:intron 20.0%
!!! ATTTTGGTTTGATATATCTT+GGG - chr6_1:54188954-54188973 Msa0888820:intron 20.0%
!! CAATATTAATGCTAAAAAAG+TGG - chr6_1:54189236-54189255 Msa0888820:intron 20.0%
!! AAATCGTATATTAAACCTTT+CGG + chr6_1:54189427-54189446 None:intergenic 20.0%
!! CAAGCAATTGTTATATAATA+TGG + chr6_1:54189775-54189794 None:intergenic 20.0%
!!! CCTTCAATTTTGATATAAAT+TGG + chr6_1:54190301-54190320 None:intergenic 20.0%
!! CCAATTTATATCAAAATTGA+AGG - chr6_1:54190298-54190317 Msa0888820:intron 20.0%
!! TTATATCAAAATTGAAGGAA+TGG - chr6_1:54190303-54190322 Msa0888820:intron 20.0%
!! TATATCAAAATTGAAGGAAT+GGG - chr6_1:54190304-54190323 Msa0888820:intron 20.0%
!! AGTTAAAAAGTGTGGATAAA+TGG + chr6_1:54182260-54182279 None:intergenic 25.0%
! AGAATAAGAGTTAAAAAGTG+TGG + chr6_1:54182268-54182287 None:intergenic 25.0%
! AATTTACCTCTTTGAACATA+TGG + chr6_1:54183425-54183444 None:intergenic 25.0%
! AATAAGGAAAATGCTAATTG+TGG + chr6_1:54183590-54183609 None:intergenic 25.0%
! GGTTATTACTATTAGATTCA+AGG - chr6_1:54183661-54183680 Msa0888820:intron 25.0%
!! TCAAGGGTTAAATATGTTTT+TGG - chr6_1:54183678-54183697 Msa0888820:intron 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG + chr6_1:54184109-54184128 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG + chr6_1:54184108-54184127 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG - chr6_1:54184108-54184127 Msa0888820:intron 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG - chr6_1:54184109-54184128 Msa0888820:intron 25.0%
!! TTCATCATGTTTTGTCAAAT+AGG - chr6_1:54184451-54184470 Msa0888820:CDS 25.0%
!! TCATCATGTTTTGTCAAATA+GGG - chr6_1:54184452-54184471 Msa0888820:CDS 25.0%
! ACAGAAATGTAAAAATGCAA+TGG + chr6_1:54184503-54184522 None:intergenic 25.0%
!! CATTTTTACATTTCTGTGAT+TGG - chr6_1:54184506-54184525 Msa0888820:CDS 25.0%
! ATTTACTTGTCCTGTAATAT+CGG + chr6_1:54184598-54184617 None:intergenic 25.0%
!! ACTATTGATGATTCTGATAT+AGG - chr6_1:54184723-54184742 Msa0888820:intron 25.0%
! TTGAACAGATATATATTCAG+TGG + chr6_1:54184799-54184818 None:intergenic 25.0%
!!! TAGTGATTTTGATAGCAATT+CGG - chr6_1:54184914-54184933 Msa0888820:CDS 25.0%
!! AGAACAATCTATCTTTCTTT+TGG - chr6_1:54186166-54186185 Msa0888820:intron 25.0%
!! GAACAATCTATCTTTCTTTT+GGG - chr6_1:54186167-54186186 Msa0888820:intron 25.0%
! TATGAGTTATAGATAAAAGG+AGG - chr6_1:54186338-54186357 Msa0888820:intron 25.0%
!! CTCATTTTGTCTCTTATAAA+AGG + chr6_1:54186409-54186428 None:intergenic 25.0%
! CTGAATTGTCTCTTATAAAA+AGG - chr6_1:54186725-54186744 Msa0888820:intron 25.0%
! AAGAGTCCTAATTCTAAATA+AGG - chr6_1:54186829-54186848 Msa0888820:intron 25.0%
! TTGTTGGAAAATGTTAATAG+AGG + chr6_1:54186948-54186967 None:intergenic 25.0%
! ACTACTTATAATTAAGTGAG+GGG + chr6_1:54186972-54186991 None:intergenic 25.0%
! GACTACTTATAATTAAGTGA+GGG + chr6_1:54186973-54186992 None:intergenic 25.0%
!! TAGCTAATGATTTTATTGAG+AGG - chr6_1:54187085-54187104 Msa0888820:intron 25.0%
! AAAAGACACATAATATGAGA+TGG - chr6_1:54187122-54187141 Msa0888820:intron 25.0%
!! AGTAGTTTATTTCTTCTTTC+TGG - chr6_1:54187291-54187310 Msa0888820:intron 25.0%
!! GCAGTTGTACTTTATATTTT+TGG - chr6_1:54187776-54187795 Msa0888820:CDS 25.0%
! CAGAAATTAACATATGAGAT+AGG + chr6_1:54187899-54187918 None:intergenic 25.0%
! GATCAATGCAATTGAAAAAA+TGG - chr6_1:54188593-54188612 Msa0888820:intron 25.0%
!!! TTTTTCAAAGTTAAGGAATG+AGG - chr6_1:54188719-54188738 Msa0888820:CDS 25.0%
! AAATAGCATATGAAAAAGAG+AGG - chr6_1:54188781-54188800 Msa0888820:intron 25.0%
!! AAAAGTTTCATGATTTTACC+TGG + chr6_1:54188901-54188920 None:intergenic 25.0%
! CAAAAAATGAGTTTATACGT+GGG + chr6_1:54189014-54189033 None:intergenic 25.0%
! TTTGATACCATCTTAGAATT+TGG - chr6_1:54189149-54189168 Msa0888820:intron 25.0%
! TTGATACCATCTTAGAATTT+GGG - chr6_1:54189150-54189169 Msa0888820:intron 25.0%
!! AAAGTGGTATCTAGAATTAT+TGG - chr6_1:54189252-54189271 Msa0888820:intron 25.0%
! AACAAAATAAGTGGTAACAA+TGG - chr6_1:54189570-54189589 Msa0888820:intron 25.0%
! GCAATTGTTATATAATATGG+TGG + chr6_1:54189772-54189791 None:intergenic 25.0%
!! TATGTTAATTGTTTGGAATC+AGG - chr6_1:54189997-54190016 Msa0888820:intron 25.0%
! TTTGGATTAACTGTAAAAGA+AGG - chr6_1:54190422-54190441 Msa0888820:intron 25.0%
! CAAACAATAACAGATTTGAT+AGG - chr6_1:54190841-54190860 Msa0888820:five_prime_UTR 25.0%
! TAAAAAGTGTGGATAAATGG+AGG + chr6_1:54182257-54182276 None:intergenic 30.0%
! AAGAAGAAGAAGGAATCTTT+TGG - chr6_1:54182553-54182572 Msa0888820:three_prime_UTR 30.0%
ATCATTATGATCCATGATAC+TGG - chr6_1:54182754-54182773 Msa0888820:CDS 30.0%
ACAAGTGTATACATTAGATC+AGG - chr6_1:54183028-54183047 Msa0888820:CDS 30.0%
TTGTCAAATAGCAGTTATAG+TGG + chr6_1:54183196-54183215 None:intergenic 30.0%
TTGTACCAAATAGCTTATTG+TGG - chr6_1:54183220-54183239 Msa0888820:intron 30.0%
TTGTTCCACAATAAGCTATT+TGG + chr6_1:54183228-54183247 None:intergenic 30.0%
AATAGCTTATTGTGGAACAA+CGG - chr6_1:54183228-54183247 Msa0888820:intron 30.0%
AATACAACACTATAGTGTAG+CGG + chr6_1:54183269-54183288 None:intergenic 30.0%
ATGTCAAATAGTAGCTATAG+TGG + chr6_1:54183389-54183408 None:intergenic 30.0%
GCTACTATTTGACATGTATA+TGG - chr6_1:54183394-54183413 Msa0888820:intron 30.0%
GAAAAACCATATGTTCAAAG+AGG - chr6_1:54183416-54183435 Msa0888820:intron 30.0%
AAATGAGTCCTCATAATTTG+AGG - chr6_1:54183449-54183468 Msa0888820:intron 30.0%
AATGAGTCCTCATAATTTGA+GGG - chr6_1:54183450-54183469 Msa0888820:intron 30.0%
!!! CTAATATTTTGGTTAACCCA+TGG + chr6_1:54183479-54183498 None:intergenic 30.0%
! CATGGGTTAACCAAAATATT+AGG - chr6_1:54183477-54183496 Msa0888820:intron 30.0%
ACCAAAATATTAGGCATTTG+AGG - chr6_1:54183486-54183505 Msa0888820:intron 30.0%
TTAACTTCTTAAAGGCAATG+AGG - chr6_1:54183564-54183583 Msa0888820:intron 30.0%
CCTCAGCACTAATAATAATA+AGG + chr6_1:54183606-54183625 None:intergenic 30.0%
CCTTATTATTATTAGTGCTG+AGG - chr6_1:54183603-54183622 Msa0888820:intron 30.0%
TTATAGGGACTAAAAGTTGA+AGG + chr6_1:54184095-54184114 None:intergenic 30.0%
TTATAGGGACTAAAAGTTGA+AGG - chr6_1:54184095-54184114 Msa0888820:intron 30.0%
!!! TTTTGAAGTAGTTTGCTTTC+AGG - chr6_1:54184307-54184326 Msa0888820:CDS 30.0%
! ATTTCGTTTTCCAAGAGATA+AGG + chr6_1:54184389-54184408 None:intergenic 30.0%
TTATCTCTTGGAAAACGAAA+TGG - chr6_1:54184388-54184407 Msa0888820:CDS 30.0%
CAAGAAAATGGTAAATTGGA+AGG - chr6_1:54184636-54184655 Msa0888820:CDS 30.0%
ATAGTCACCTTGAATGATAT+CGG + chr6_1:54184700-54184719 None:intergenic 30.0%
TGATGATTCTGATATAGGAT+CGG - chr6_1:54184728-54184747 Msa0888820:intron 30.0%
! TTTCAGTTTGAAGTGGTATT+TGG + chr6_1:54184878-54184897 None:intergenic 30.0%
!! AGAGTATTTTCAGTTTGAAG+TGG + chr6_1:54184885-54184904 None:intergenic 30.0%
!! TTTCTGGTTCAGCATTAAAT+TGG + chr6_1:54184980-54184999 None:intergenic 30.0%
! TCATAATTGGGTATGTTTTC+TGG + chr6_1:54184996-54185015 None:intergenic 30.0%
GAAAACATACCCAATTATGA+TGG - chr6_1:54184996-54185015 Msa0888820:CDS 30.0%
ATTTCTAATCTCACTTGAAC+TGG + chr6_1:54185063-54185082 None:intergenic 30.0%
CATCTTCGCTTAAAATCTTA+GGG + chr6_1:54185184-54185203 None:intergenic 30.0%
TCATCTTCGCTTAAAATCTT+AGG + chr6_1:54185185-54185204 None:intergenic 30.0%
GAAGATGATCAAGACAATAT+TGG - chr6_1:54185197-54185216 Msa0888820:intron 30.0%
TACTTAAATGGTCATTTCCA+GGG + chr6_1:54185265-54185284 None:intergenic 30.0%
TTACTTAAATGGTCATTTCC+AGG + chr6_1:54185266-54185285 None:intergenic 30.0%
ATTTCTGAATCTCCAAATTC+TGG - chr6_1:54185362-54185381 Msa0888820:intron 30.0%
GTGTGTAAATTTCGAAATAC+AGG + chr6_1:54185620-54185639 None:intergenic 30.0%
TGAAAGGAATTTATAAGGAG+TGG + chr6_1:54185771-54185790 None:intergenic 30.0%
ACTCCTTATAAATTCCTTTC+AGG - chr6_1:54185770-54185789 Msa0888820:intron 30.0%
ATGCCTGAAAGGAATTTATA+AGG + chr6_1:54185776-54185795 None:intergenic 30.0%
GAAAATAGATAATGCCTGAA+AGG + chr6_1:54185787-54185806 None:intergenic 30.0%
! AACCTAATCTATTTTCAACG+TGG - chr6_1:54185991-54186010 Msa0888820:intron 30.0%
TACCACGTTGAAAATAGATT+AGG + chr6_1:54185996-54186015 None:intergenic 30.0%
GGTATCATTTGTTCTTATTG+GGG + chr6_1:54186029-54186048 None:intergenic 30.0%
GGGTATCATTTGTTCTTATT+GGG + chr6_1:54186030-54186049 None:intergenic 30.0%
! AGGGTATCATTTGTTCTTAT+TGG + chr6_1:54186031-54186050 None:intergenic 30.0%
ATTGAAGGAATAGTAGGTTT+AGG - chr6_1:54186249-54186268 Msa0888820:intron 30.0%
TTTGTCTCTTATAAAAGGAC+CGG + chr6_1:54186404-54186423 None:intergenic 30.0%
! AATAAGGGTATACATGGTAT+TGG + chr6_1:54186497-54186516 None:intergenic 30.0%
TCCTATGATTAATACTTCAC+CGG + chr6_1:54186605-54186624 None:intergenic 30.0%
ATACAAAAAAGTGATTTCCC+TGG - chr6_1:54186689-54186708 Msa0888820:intron 30.0%
AGACAATTCAGAAATTCACA+TGG + chr6_1:54186716-54186735 None:intergenic 30.0%
TTGTCTCTTATAAAAAGGAC+CGG - chr6_1:54186730-54186749 Msa0888820:intron 30.0%
AATGTTAATAGAGGTTGTCT+TGG + chr6_1:54186939-54186958 None:intergenic 30.0%
GGACTACTTATAATTAAGTG+AGG + chr6_1:54186974-54186993 None:intergenic 30.0%
!!! AGGCTATAGACACTATTTTT+TGG - chr6_1:54187050-54187069 Msa0888820:intron 30.0%
!! ATGGAGTATTTTTGTTCACT+CGG - chr6_1:54187141-54187160 Msa0888820:intron 30.0%
TTAAAACCTGTTAATTCCTC+AGG - chr6_1:54187178-54187197 Msa0888820:intron 30.0%
GAATGTCAAGATGTATACAA+CGG - chr6_1:54187321-54187340 Msa0888820:intron 30.0%
AATGTCAAGATGTATACAAC+GGG - chr6_1:54187322-54187341 Msa0888820:intron 30.0%
AGTAGCATTATCTATGTACA+TGG + chr6_1:54187434-54187453 None:intergenic 30.0%
CTTGAATGGAAGAAAAATCA+GGG + chr6_1:54187489-54187508 None:intergenic 30.0%
!! TTTTTAGCAATACAACCACT+TGG - chr6_1:54187532-54187551 Msa0888820:intron 30.0%
! TCTGAAGAATATTGTTTTCC+AGG - chr6_1:54187572-54187591 Msa0888820:intron 30.0%
TGTCTATAAAACCAGAAAGT+CGG + chr6_1:54188105-54188124 None:intergenic 30.0%
AGCAGATTCAAAACAAGTAT+AGG + chr6_1:54188298-54188317 None:intergenic 30.0%
TATTAATGCCAGTTATGAAC+AGG - chr6_1:54188548-54188567 Msa0888820:CDS 30.0%
AATTGAAAAAATGGCTGAAG+AGG - chr6_1:54188602-54188621 Msa0888820:intron 30.0%
!!! TGGAGGTTTTTTCAAAGTTA+AGG - chr6_1:54188712-54188731 Msa0888820:CDS 30.0%
ACAAAGTCTAATGAGTAACA+AGG - chr6_1:54188755-54188774 Msa0888820:CDS 30.0%
CCAAAAAATGAGTTTATACG+TGG + chr6_1:54189015-54189034 None:intergenic 30.0%
!!! CCACGTATAAACTCATTTTT+TGG - chr6_1:54189012-54189031 Msa0888820:intron 30.0%
CTGAAAATGAGTCTATAAGT+GGG + chr6_1:54189186-54189205 None:intergenic 30.0%
!!! TTATTCACCACTTTTTCCTT+TGG - chr6_1:54189285-54189304 Msa0888820:intron 30.0%
TTAATTCAATCCCAAACCAA+AGG + chr6_1:54189304-54189323 None:intergenic 30.0%
ATATAAATTGGGAAACCATG+AGG + chr6_1:54190289-54190308 None:intergenic 30.0%
!! TTCAGCCTGTAATTTTGTTT+TGG + chr6_1:54190333-54190352 None:intergenic 30.0%
AAATTACAGGCTGAAGAATT+TGG - chr6_1:54190338-54190357 Msa0888820:intron 30.0%
TACAGTTAATCCAAATTCGA+CGG + chr6_1:54190417-54190436 None:intergenic 30.0%
AGTAGATTAAAGATGCTGTA+GGG + chr6_1:54190540-54190559 None:intergenic 30.0%
TAGTAGATTAAAGATGCTGT+AGG + chr6_1:54190541-54190560 None:intergenic 30.0%
!!! CTATTTTTGAAGCTGTTGAT+TGG - chr6_1:54190558-54190577 Msa0888820:CDS 30.0%
AACTCAGTAAACTACATTTC+TGG + chr6_1:54190584-54190603 None:intergenic 30.0%
TAACTTTCCATAACTGTCTT+TGG - chr6_1:54190663-54190682 Msa0888820:CDS 30.0%
ACTGATAGCAATTGTAATTG+AGG - chr6_1:54190733-54190752 Msa0888820:CDS 30.0%
TGCTGACATTTGAGTAATAA+CGG + chr6_1:54190790-54190809 None:intergenic 30.0%
AGATTCCTTCTTCTTCTTCT+GGG + chr6_1:54182551-54182570 None:intergenic 35.0%
AAGATTCCTTCTTCTTCTTC+TGG + chr6_1:54182552-54182571 None:intergenic 35.0%
! AAGAAGAAGGAATCTTTTGG+AGG - chr6_1:54182556-54182575 Msa0888820:three_prime_UTR 35.0%
! TGAGTTGAAGTTAAGTGCTT+TGG - chr6_1:54182709-54182728 Msa0888820:CDS 35.0%
CAGTTTCATATCCAGTATCA+TGG + chr6_1:54182768-54182787 None:intergenic 35.0%
TCCAAAGAGACGTTTGATAT+AGG - chr6_1:54183074-54183093 Msa0888820:intron 35.0%
TCCTATATCAAACGTCTCTT+TGG + chr6_1:54183078-54183097 None:intergenic 35.0%
! GTGTTTTCAATCGCATATCT+CGG - chr6_1:54183123-54183142 Msa0888820:intron 35.0%
TTGTCAAATAGAAGCAACAG+TGG + chr6_1:54183293-54183312 None:intergenic 35.0%
AATACAACACTGTAGTGTAG+CGG + chr6_1:54183365-54183384 None:intergenic 35.0%
ATGGTATCCCTCAAATTATG+AGG + chr6_1:54183460-54183479 None:intergenic 35.0%
TCATAATTTGAGGGATACCA+TGG - chr6_1:54183459-54183478 Msa0888820:intron 35.0%
CATAATTTGAGGGATACCAT+GGG - chr6_1:54183460-54183479 Msa0888820:intron 35.0%
! GCCTCAAATGCCTAATATTT+TGG + chr6_1:54183490-54183509 None:intergenic 35.0%
ATAATAAGGCAAATGCTGTG+TGG + chr6_1:54183512-54183531 None:intergenic 35.0%
GAGGGACTAAAATGAAAAGT+TGG + chr6_1:54183718-54183737 None:intergenic 35.0%
GAGGGACTAAAACAAAAAGT+TGG - chr6_1:54184127-54184146 Msa0888820:intron 35.0%
ATTATCAAATCAGCATGACC+TGG - chr6_1:54184193-54184212 Msa0888820:intron 35.0%
TAGTTGAGGATTTGAGAGAA+TGG - chr6_1:54184218-54184237 Msa0888820:CDS 35.0%
! ACCTATTTTGCCTTATCTCT+TGG - chr6_1:54184376-54184395 Msa0888820:CDS 35.0%
TCCAAGAGATAAGGCAAAAT+AGG + chr6_1:54184380-54184399 None:intergenic 35.0%
AGTAAATGCTGAGAACAAGT+TGG - chr6_1:54184611-54184630 Msa0888820:CDS 35.0%
! AACAAGTTGGAGCAAGAAAA+TGG - chr6_1:54184624-54184643 Msa0888820:CDS 35.0%
GGAGCAAGAAAATGGTAAAT+TGG - chr6_1:54184632-54184651 Msa0888820:CDS 35.0%
!!! AGTGGTATTTGGTTTTCACT+GGG + chr6_1:54184867-54184886 None:intergenic 35.0%
!!! AAGTGGTATTTGGTTTTCAC+TGG + chr6_1:54184868-54184887 None:intergenic 35.0%
! ACTGGCTTACCATCATAATT+GGG + chr6_1:54185008-54185027 None:intergenic 35.0%
!! TACTGGCTTACCATCATAAT+TGG + chr6_1:54185009-54185028 None:intergenic 35.0%
TGCTCATTATTAAGGTCTAC+TGG + chr6_1:54185026-54185045 None:intergenic 35.0%
GATATTTCCAAAACCTCATC+TGG - chr6_1:54185086-54185105 Msa0888820:intron 35.0%
!! GAAATTGTGTTGTTTGACTC+AGG + chr6_1:54185158-54185177 None:intergenic 35.0%
!!! AGACCTGTTGAGTTTTGTTA+AGG + chr6_1:54185223-54185242 None:intergenic 35.0%
! AACTCAACAGGTCTTATATG+AGG - chr6_1:54185229-54185248 Msa0888820:intron 35.0%
ACCATTGACCAATTCATCAT+TGG - chr6_1:54185298-54185317 Msa0888820:intron 35.0%
TCCAATGATGAATTGGTCAA+TGG + chr6_1:54185302-54185321 None:intergenic 35.0%
CTGATCATCCAATGATGAAT+TGG + chr6_1:54185309-54185328 None:intergenic 35.0%
CAATTCATCATTGGATGATC+AGG - chr6_1:54185307-54185326 Msa0888820:intron 35.0%
!! AGCTGCATTGCAAGTTTTAA+AGG - chr6_1:54185502-54185521 Msa0888820:intron 35.0%
! GGCATAACCCAAATTTTAAG+AGG + chr6_1:54185708-54185727 None:intergenic 35.0%
! CTTTACAAGCCTGTTTTGTA+GGG + chr6_1:54185739-54185758 None:intergenic 35.0%
CTACAAAACAGGCTTGTAAA+GGG - chr6_1:54185738-54185757 Msa0888820:intron 35.0%
ACTCAATACAGAGATGGTAT+CGG + chr6_1:54185907-54185926 None:intergenic 35.0%
AGTTAGACTCAATACAGAGA+TGG + chr6_1:54185913-54185932 None:intergenic 35.0%
!! CCTGAAAAGCTGATTTTGTA+AGG + chr6_1:54185939-54185958 None:intergenic 35.0%
! CCTTACAAAATCAGCTTTTC+AGG - chr6_1:54185936-54185955 Msa0888820:intron 35.0%
! TCTATTTTCAACGTGGTACT+TGG - chr6_1:54185998-54186017 Msa0888820:intron 35.0%
!! TTTTTGGGCAGTTTCTATGA+GGG + chr6_1:54186050-54186069 None:intergenic 35.0%
!! ATTTTTGGGCAGTTTCTATG+AGG + chr6_1:54186051-54186070 None:intergenic 35.0%
TAAGCCATGCTCTATCTTAT+TGG - chr6_1:54186132-54186151 Msa0888820:intron 35.0%
ATCACCAATAAGATAGAGCA+TGG + chr6_1:54186139-54186158 None:intergenic 35.0%
TTCAACACATGCACATCTTT+CGG + chr6_1:54186316-54186335 None:intergenic 35.0%
CAAGGAGATGTATATATCCA+AGG + chr6_1:54186566-54186585 None:intergenic 35.0%
! ACCGGTGAAGTATTAATCAT+AGG - chr6_1:54186601-54186620 Msa0888820:intron 35.0%
TTGAATATCCCTACAAACAG+TGG + chr6_1:54186804-54186823 None:intergenic 35.0%
TAATTAAGTGAGGGGATTGT+TGG + chr6_1:54186964-54186983 None:intergenic 35.0%
TTAGTAGCAGTGTAGTAGTT+AGG + chr6_1:54186998-54187017 None:intergenic 35.0%
!!! TGCATTTGTGGTTACTTTTC+AGG - chr6_1:54187383-54187402 Msa0888820:intron 35.0%
CCTTGAATGGAAGAAAAATC+AGG + chr6_1:54187490-54187509 None:intergenic 35.0%
! CCTGATTTTTCTTCCATTCA+AGG - chr6_1:54187487-54187506 Msa0888820:intron 35.0%
! AGAATATTGTTTTCCAGGCT+TGG - chr6_1:54187577-54187596 Msa0888820:intron 35.0%
TTTCAGGGGAGAAGTAAAAA+GGG + chr6_1:54187673-54187692 None:intergenic 35.0%
ATTCATCAGTTCAATGCAGA+TGG + chr6_1:54188051-54188070 None:intergenic 35.0%
TAGTAGCTGATCTTTCTTCT+GGG - chr6_1:54188158-54188177 Msa0888820:CDS 35.0%
GGAATAATTGCTCTTGCATT+TGG - chr6_1:54188187-54188206 Msa0888820:CDS 35.0%
AAAGTTAAGGAATGAGGTTC+AGG - chr6_1:54188725-54188744 Msa0888820:CDS 35.0%
CTCTAGATCATACTGTAAAC+GGG + chr6_1:54188853-54188872 None:intergenic 35.0%
CCTCTAGATCATACTGTAAA+CGG + chr6_1:54188854-54188873 None:intergenic 35.0%
! GTCTCATCAACTCTCAATTT+TGG - chr6_1:54188938-54188957 Msa0888820:intron 35.0%
TGGTTTGATATATCTTGGGT+TGG - chr6_1:54188958-54188977 Msa0888820:intron 35.0%
AAAATGAGTTTATACGTGGG+AGG + chr6_1:54189011-54189030 None:intergenic 35.0%
GTGTGTTAAAAGTCTCACAT+TGG + chr6_1:54189049-54189068 None:intergenic 35.0%
AAAGCCTATCCAAGATCTAT+TGG + chr6_1:54189132-54189151 None:intergenic 35.0%
! ATCTCACCCAAATTCTAAGA+TGG + chr6_1:54189159-54189178 None:intergenic 35.0%
CCTGAAAATGAGTCTATAAG+TGG + chr6_1:54189187-54189206 None:intergenic 35.0%
! CCACTTATAGACTCATTTTC+AGG - chr6_1:54189184-54189203 Msa0888820:intron 35.0%
AGGCCATATCTAATTCAATG+TGG - chr6_1:54189204-54189223 Msa0888820:intron 35.0%
GGCCATATCTAATTCAATGT+GGG - chr6_1:54189205-54189224 Msa0888820:intron 35.0%
GACCCACATTGAATTAGATA+TGG + chr6_1:54189210-54189229 None:intergenic 35.0%
!!! ACCACTTTTTCCTTTGGTTT+GGG - chr6_1:54189291-54189310 Msa0888820:intron 35.0%
TATTCCATACCATCCAATCA+AGG - chr6_1:54189329-54189348 Msa0888820:intron 35.0%
AAGTAACACTGAAATCCGAA+AGG - chr6_1:54189409-54189428 Msa0888820:intron 35.0%
! GTTGTTATTGCGATATGCTT+CGG - chr6_1:54189498-54189517 Msa0888820:intron 35.0%
! GTTGTTATTGCGATATGCTT+CGG - chr6_1:54189498-54189517 Msa0888820:intron 35.0%
GCAAGAGATAAACACATACA+TGG + chr6_1:54189730-54189749 None:intergenic 35.0%
ATCAGTGCACAAATTCAAGT+AGG + chr6_1:54189831-54189850 None:intergenic 35.0%
! TGAATTTGTGCACTGATGTT+CGG - chr6_1:54189834-54189853 Msa0888820:intron 35.0%
! AATTGTTTGGAATCAGGACT+TGG - chr6_1:54190003-54190022 Msa0888820:intron 35.0%
! ATTGTTTGGAATCAGGACTT+GGG - chr6_1:54190004-54190023 Msa0888820:intron 35.0%
AATTGACAAGATCATCCTCA+TGG - chr6_1:54190271-54190290 Msa0888820:intron 35.0%
!!! AGCCTGTAATTTTGTTTTGG+AGG + chr6_1:54190330-54190349 None:intergenic 35.0%
! GAACTTATGAGCGAACTTTT+GGG + chr6_1:54190495-54190514 None:intergenic 35.0%
! TGAACTTATGAGCGAACTTT+TGG + chr6_1:54190496-54190515 None:intergenic 35.0%
TAGATTAAAGATGCTGTAGG+GGG + chr6_1:54190538-54190557 None:intergenic 35.0%
GTAGATTAAAGATGCTGTAG+GGG + chr6_1:54190539-54190558 None:intergenic 35.0%
TGATCATCCAAAGACAGTTA+TGG + chr6_1:54190673-54190692 None:intergenic 35.0%
ATTGAAGCCATGAAGAGAGA+GGG + chr6_1:54182298-54182317 None:intergenic 40.0%
AATTGAAGCCATGAAGAGAG+AGG + chr6_1:54182299-54182318 None:intergenic 40.0%
! AGAGATGTTGGTGAACATGT+GGG + chr6_1:54182325-54182344 None:intergenic 40.0%
! AAGAGATGTTGGTGAACATG+TGG + chr6_1:54182326-54182345 None:intergenic 40.0%
AATCGGAGTTGAAGAGATGT+TGG + chr6_1:54182337-54182356 None:intergenic 40.0%
!! TTCTAAGGGTGATGGGTTAT+CGG - chr6_1:54182486-54182505 Msa0888820:three_prime_UTR 40.0%
TGATTCCCAGAAGAAGAAGA+AGG - chr6_1:54182543-54182562 Msa0888820:three_prime_UTR 40.0%
!! ATCTTTTGGAGGTGTGTGTA+TGG - chr6_1:54182567-54182586 Msa0888820:three_prime_UTR 40.0%
ACAGCTGCAATATGAAGTGA+TGG - chr6_1:54182986-54183005 Msa0888820:CDS 40.0%
CAGCTGCAATATGAAGTGAT+GGG - chr6_1:54182987-54183006 Msa0888820:CDS 40.0%
!! ATGAAGTGATGGGTCTACAT+AGG - chr6_1:54182997-54183016 Msa0888820:CDS 40.0%
TTGAAAACACTGCATACGCA+CGG + chr6_1:54183113-54183132 None:intergenic 40.0%
!! TAGTTTGCTTTCAGGAGTTG+TGG - chr6_1:54184315-54184334 Msa0888820:CDS 40.0%
! AGTTTGCTTTCAGGAGTTGT+GGG - chr6_1:54184316-54184335 Msa0888820:CDS 40.0%
TAAGGCAAAATAGGTAAGCC+CGG + chr6_1:54184371-54184390 None:intergenic 40.0%
TTCCAGTAAGTAATCCTAGC+TGG - chr6_1:54184411-54184430 Msa0888820:CDS 40.0%
TCTGTGATTGGATACAGAAG+AGG - chr6_1:54184518-54184537 Msa0888820:CDS 40.0%
TCTTCTGATGCCGATATTAC+AGG - chr6_1:54184585-54184604 Msa0888820:CDS 40.0%
AAGGTCAGATAGATACATCC+CGG - chr6_1:54184655-54184674 Msa0888820:CDS 40.0%
ACTCAGGAGATGAATAATCC+CGG + chr6_1:54184677-54184696 None:intergenic 40.0%
TTCTGATATAGGATCGGAGT+TGG - chr6_1:54184734-54184753 Msa0888820:intron 40.0%
GATAGCAAAAACACCTCCAA+TGG - chr6_1:54184762-54184781 Msa0888820:intron 40.0%
AGTGGCATCATTGATACCAT+TGG + chr6_1:54184781-54184800 None:intergenic 40.0%
AGACCTTAATAATGAGCAGC+AGG - chr6_1:54185028-54185047 Msa0888820:intron 40.0%
CATCCTGCTGCTCATTATTA+AGG + chr6_1:54185034-54185053 None:intergenic 40.0%
! TCCAAAACCTCATCTGGTTT+AGG - chr6_1:54185092-54185111 Msa0888820:intron 40.0%
! ACCTAAACCAGATGAGGTTT+TGG + chr6_1:54185096-54185115 None:intergenic 40.0%
GACTGAAACTGTTAGTACTG+TGG - chr6_1:54185127-54185146 Msa0888820:CDS 40.0%
! TGGCCTTAACAAAACTCAAC+AGG - chr6_1:54185217-54185236 Msa0888820:intron 40.0%
GAGAAAAGGGATCCAGAATT+TGG + chr6_1:54185377-54185396 None:intergenic 40.0%
AAAGCTGCAGAAACTACTGA+TGG + chr6_1:54185419-54185438 None:intergenic 40.0%
AGTAGTTTCTGCAGCTTTAC+AGG - chr6_1:54185421-54185440 Msa0888820:CDS 40.0%
! CTGTTTTGTAGGGTTGAGTT+TGG + chr6_1:54185729-54185748 None:intergenic 40.0%
CAAACTCAACCCTACAAAAC+AGG - chr6_1:54185727-54185746 Msa0888820:intron 40.0%
! CCTTTACAAGCCTGTTTTGT+AGG + chr6_1:54185740-54185759 None:intergenic 40.0%
CCTACAAAACAGGCTTGTAA+AGG - chr6_1:54185737-54185756 Msa0888820:intron 40.0%
AAAACAGGCTTGTAAAGGGA+AGG - chr6_1:54185742-54185761 Msa0888820:intron 40.0%
AAACAGGCTTGTAAAGGGAA+GGG - chr6_1:54185743-54185762 Msa0888820:intron 40.0%
TTCTCACGTCCAACACTATT+GGG - chr6_1:54185837-54185856 Msa0888820:CDS 40.0%
GGCTTAGTAACACAACACAA+TGG + chr6_1:54186118-54186137 None:intergenic 40.0%
!! CTCTATCTTATTGGTGATGC+TGG - chr6_1:54186141-54186160 Msa0888820:intron 40.0%
ATGTTATTGAGTACTCCCTC+CGG - chr6_1:54186382-54186401 Msa0888820:intron 40.0%
TCTCTTATAAAAGGACCGGA+GGG + chr6_1:54186400-54186419 None:intergenic 40.0%
! TATATCCAAGGCACTTGCAT+TGG + chr6_1:54186554-54186573 None:intergenic 40.0%
ACATCTCCTTGCACGTTAAT+TGG - chr6_1:54186575-54186594 Msa0888820:intron 40.0%
! TTGCACGTTAATTGGCTTAC+CGG - chr6_1:54186583-54186602 Msa0888820:intron 40.0%
TCAGAAATTCACATGGACCA+GGG + chr6_1:54186709-54186728 None:intergenic 40.0%
TTCAGAAATTCACATGGACC+AGG + chr6_1:54186710-54186729 None:intergenic 40.0%
TCTCTTATAAAAAGGACCGG+AGG - chr6_1:54186733-54186752 Msa0888820:intron 40.0%
CTCTTATAAAAAGGACCGGA+GGG - chr6_1:54186734-54186753 Msa0888820:intron 40.0%
TAGCAAAGTTATACTCCCTC+CGG + chr6_1:54186752-54186771 None:intergenic 40.0%
AACCACTAACCACTGTTTGT+AGG - chr6_1:54186792-54186811 Msa0888820:intron 40.0%
ACCACTAACCACTGTTTGTA+GGG - chr6_1:54186793-54186812 Msa0888820:intron 40.0%
CAATGACCTGAGGAATTAAC+AGG + chr6_1:54187187-54187206 None:intergenic 40.0%
! AAATCACCAGGTTGAACATC+AGG + chr6_1:54187212-54187231 None:intergenic 40.0%
!!! GTGGTTACTTTTCAGGAATG+CGG - chr6_1:54187390-54187409 Msa0888820:intron 40.0%
GCATTATCTATGTACATGGC+AGG + chr6_1:54187430-54187449 None:intergenic 40.0%
AAGAAAAATCAGGGTCCTCA+GGG + chr6_1:54187480-54187499 None:intergenic 40.0%
! TGTCAAGTTCTGACCTTGAA+TGG + chr6_1:54187503-54187522 None:intergenic 40.0%
ACATAATGGCATAGACCAAG+TGG + chr6_1:54187550-54187569 None:intergenic 40.0%
AAGCTGGACTTATTGAAAGC+AGG - chr6_1:54187603-54187622 Msa0888820:CDS 40.0%
CTTTCAGGGGAGAAGTAAAA+AGG + chr6_1:54187674-54187693 None:intergenic 40.0%
! CTTTTTACTTCTCCCCTGAA+AGG - chr6_1:54187672-54187691 Msa0888820:CDS 40.0%
ACCAAGAACATACCTTTCAG+GGG + chr6_1:54187687-54187706 None:intergenic 40.0%
CACCAAGAACATACCTTTCA+GGG + chr6_1:54187688-54187707 None:intergenic 40.0%
TCACCAAGAACATACCTTTC+AGG + chr6_1:54187689-54187708 None:intergenic 40.0%
! AGGAAGCTGTCTTTTCTCTA+GGG + chr6_1:54187963-54187982 None:intergenic 40.0%
CAATGCAGATGGAATCAAGA+TGG + chr6_1:54188040-54188059 None:intergenic 40.0%
AAAGATCAGCTACTAGTGCA+GGG + chr6_1:54188153-54188172 None:intergenic 40.0%
CTAGTAGCTGATCTTTCTTC+TGG - chr6_1:54188157-54188176 Msa0888820:CDS 40.0%
AGTAGCTGATCTTTCTTCTG+GGG - chr6_1:54188159-54188178 Msa0888820:CDS 40.0%
TTGTCACAGGTTTATCTGGT+TGG + chr6_1:54188389-54188408 None:intergenic 40.0%
! GCTTTTGTCACAGGTTTATC+TGG + chr6_1:54188393-54188412 None:intergenic 40.0%
CAAAAGCTCCTGTTCATAAC+TGG + chr6_1:54188559-54188578 None:intergenic 40.0%
! AACAGGAGCTTTTGTTAGAG+AGG - chr6_1:54188565-54188584 Msa0888820:intron 40.0%
! ACAGGAGCTTTTGTTAGAGA+GGG - chr6_1:54188566-54188585 Msa0888820:intron 40.0%
TGAAGAGGCAAAACATGAGT+TGG - chr6_1:54188617-54188636 Msa0888820:intron 40.0%
TGCGGCTATTGAATCAGAAA+TGG - chr6_1:54188692-54188711 Msa0888820:intron 40.0%
GGCTATTGAATCAGAAATGG+AGG - chr6_1:54188695-54188714 Msa0888820:CDS 40.0%
AAGAGAGGATCAAGAAGCTT+CGG - chr6_1:54188796-54188815 Msa0888820:intron 40.0%
CCGTTTACAGTATGATCTAG+AGG - chr6_1:54188851-54188870 Msa0888820:intron 40.0%
! TTCATGATTTTACCTGGCCA+TGG + chr6_1:54188895-54188914 None:intergenic 40.0%
GTCTCACATTGGATGAGATA+AGG + chr6_1:54189038-54189057 None:intergenic 40.0%
!!! CACCACTTTTTCCTTTGGTT+TGG - chr6_1:54189290-54189309 Msa0888820:intron 40.0%
TCCCAAACCAAAGGAAAAAG+TGG + chr6_1:54189295-54189314 None:intergenic 40.0%
ACAACCATAGTAGCAGACAT+GGG + chr6_1:54189483-54189502 None:intergenic 40.0%
AACAACCATAGTAGCAGACA+TGG + chr6_1:54189484-54189503 None:intergenic 40.0%
TGGCTGCAAAACAAATATGC+AGG + chr6_1:54189752-54189771 None:intergenic 40.0%
!! AGAACAAGCAAGAGCATTAG+AGG - chr6_1:54190052-54190071 Msa0888820:intron 40.0%
! AGCATTGAGCCATGTAACTT+CGG + chr6_1:54190150-54190169 None:intergenic 40.0%
AAGTTACATGGCTCAATGCT+GGG - chr6_1:54190150-54190169 Msa0888820:intron 40.0%
TGACAGGGCTGAAAGATTAT+TGG - chr6_1:54190199-54190218 Msa0888820:intron 40.0%
ATTGGAGAAGCTCAAACGAA+TGG - chr6_1:54190217-54190236 Msa0888820:intron 40.0%
TTGGAGAAGCTCAAACGAAT+GGG - chr6_1:54190218-54190237 Msa0888820:intron 40.0%
GGCCTCCAAAACAAAATTAC+AGG - chr6_1:54190325-54190344 Msa0888820:intron 40.0%
AGATTAAAGATGCTGTAGGG+GGG + chr6_1:54190537-54190556 None:intergenic 40.0%
GGCAAATGTTGAATTACAGC+AGG + chr6_1:54190769-54190788 None:intergenic 40.0%
!! TGACAGGAGAAAGTACTTCA+AGG + chr6_1:54190877-54190896 None:intergenic 40.0%
TCTTCTTCCCTCTCTCTTCA+TGG - chr6_1:54182288-54182307 Msa0888820:three_prime_UTR 45.0%
TCTGACGTGATGAGAAAGAG+GGG + chr6_1:54182380-54182399 None:intergenic 45.0%
GTCTGACGTGATGAGAAAGA+GGG + chr6_1:54182381-54182400 None:intergenic 45.0%
AGTCTGACGTGATGAGAAAG+AGG + chr6_1:54182382-54182401 None:intergenic 45.0%
TTATGCACGGAGCAAAGAAG+TGG + chr6_1:54182433-54182452 None:intergenic 45.0%
! GGTCTGATTCTAAGGGTGAT+GGG - chr6_1:54182479-54182498 Msa0888820:three_prime_UTR 45.0%
!! TCTAAGGGTGATGGGTTATC+GGG - chr6_1:54182487-54182506 Msa0888820:three_prime_UTR 45.0%
GTGAGCGTAATCACATGTGT+TGG + chr6_1:54182855-54182874 None:intergenic 45.0%
ACGTGTGTTCGTGTTGTGTT+TGG - chr6_1:54182908-54182927 Msa0888820:CDS 45.0%
TGAAAACACTGCATACGCAC+GGG + chr6_1:54183112-54183131 None:intergenic 45.0%
TCGCATATCTCGGAAGAAAG+AGG - chr6_1:54183133-54183152 Msa0888820:intron 45.0%
AGCTTATTGTGGAACAACGG+CGG - chr6_1:54183231-54183250 Msa0888820:intron 45.0%
CTCAAATCCTCAACTATGCC+AGG + chr6_1:54184214-54184233 None:intergenic 45.0%
TTTCAGGAGTTGTGGGAGTA+GGG - chr6_1:54184323-54184342 Msa0888820:CDS 45.0%
! GCTGGAGTCCTTCTTTTTAC+CGG - chr6_1:54184349-54184368 Msa0888820:CDS 45.0%
! CTGGAGTCCTTCTTTTTACC+GGG - chr6_1:54184350-54184369 Msa0888820:CDS 45.0%
AGGTAAGCCCGGTAAAAAGA+AGG + chr6_1:54184360-54184379 None:intergenic 45.0%
AGCCAGCTAGGATTACTTAC+TGG + chr6_1:54184416-54184435 None:intergenic 45.0%
GAAGCCTTTGACAACACATC+AGG - chr6_1:54184551-54184570 Msa0888820:CDS 45.0%
ACCTCCTGATGTGTTGTCAA+AGG + chr6_1:54184558-54184577 None:intergenic 45.0%
AGGTCAGATAGATACATCCC+GGG - chr6_1:54184656-54184675 Msa0888820:CDS 45.0%
CTCAGGAGATGAATAATCCC+GGG + chr6_1:54184676-54184695 None:intergenic 45.0%
CCTTGAATGATATCGGACTC+AGG + chr6_1:54184693-54184712 None:intergenic 45.0%
CCTGAGTCCGATATCATTCA+AGG - chr6_1:54184690-54184709 Msa0888820:CDS 45.0%
GGCATCATTGATACCATTGG+AGG + chr6_1:54184778-54184797 None:intergenic 45.0%
! ACTTGTTGCATGAGTCAGCT+CGG - chr6_1:54184823-54184842 Msa0888820:intron 45.0%
ATCAGCACCTAAACCAGATG+AGG + chr6_1:54185102-54185121 None:intergenic 45.0%
! TATGAGGAACAGAGTATCCC+TGG - chr6_1:54185245-54185264 Msa0888820:intron 45.0%
AATGCCAGGAGCAGAGAAAA+GGG + chr6_1:54185390-54185409 None:intergenic 45.0%
GGAATCAAAACCTTTCCTGG+AGG + chr6_1:54185449-54185468 None:intergenic 45.0%
GCAGGAATCAAAACCTTTCC+TGG + chr6_1:54185452-54185471 None:intergenic 45.0%
! GATTCCTGCAGCTTTTGATC+AGG - chr6_1:54185463-54185482 Msa0888820:CDS 45.0%
TGAACCTGATCAAAAGCTGC+AGG + chr6_1:54185470-54185489 None:intergenic 45.0%
! TGCAGCTTTTGATCAGGTTC+AGG - chr6_1:54185469-54185488 Msa0888820:CDS 45.0%
! GCAGCTTTTGATCAGGTTCA+GGG - chr6_1:54185470-54185489 Msa0888820:CDS 45.0%
! TGGACGTGAGAAGGTGTATT+GGG + chr6_1:54185829-54185848 None:intergenic 45.0%
! TTGGACGTGAGAAGGTGTAT+TGG + chr6_1:54185830-54185849 None:intergenic 45.0%
! CAATAGTGTTGGACGTGAGA+AGG + chr6_1:54185838-54185857 None:intergenic 45.0%
CTTCTCACGTCCAACACTAT+TGG - chr6_1:54185836-54185855 Msa0888820:CDS 45.0%
TGCGTGGATAATATGGCAAG+TGG - chr6_1:54185865-54185884 Msa0888820:CDS 45.0%
GTCTCTTATAAAAGGACCGG+AGG + chr6_1:54186401-54186420 None:intergenic 45.0%
! AAGGCACTTGCATTGGAAGT+TGG + chr6_1:54186547-54186566 None:intergenic 45.0%
AACTTCCAATGCAAGTGCCT+TGG - chr6_1:54186546-54186565 Msa0888820:intron 45.0%
GGTAAGCCAATTAACGTGCA+AGG + chr6_1:54186584-54186603 None:intergenic 45.0%
TCCCTACAAACAGTGGTTAG+TGG + chr6_1:54186797-54186816 None:intergenic 45.0%
GTAGCAGTGTAGTAGTTAGG+CGG + chr6_1:54186995-54187014 None:intergenic 45.0%
ATTGAGCCTGATGTTCAACC+TGG - chr6_1:54187203-54187222 Msa0888820:intron 45.0%
TGGCATTACACGTGCATTTG+TGG - chr6_1:54187371-54187390 Msa0888820:intron 45.0%
! ATTTGATGACATCACCCCTG+AGG - chr6_1:54187462-54187481 Msa0888820:intron 45.0%
AGAAAAATCAGGGTCCTCAG+GGG + chr6_1:54187479-54187498 None:intergenic 45.0%
GAAGAAAAATCAGGGTCCTC+AGG + chr6_1:54187481-54187500 None:intergenic 45.0%
! TCCCCTGAAAGGTATGTTCT+TGG - chr6_1:54187683-54187702 Msa0888820:CDS 45.0%
! TTTTCCAGCTGACAAGATCC+TGG + chr6_1:54187937-54187956 None:intergenic 45.0%
GGATCTTGTCAGCTGGAAAA+TGG - chr6_1:54187937-54187956 Msa0888820:CDS 45.0%
! CAGGAAGCTGTCTTTTCTCT+AGG + chr6_1:54187964-54187983 None:intergenic 45.0%
GAAAGATCAGCTACTAGTGC+AGG + chr6_1:54188154-54188173 None:intergenic 45.0%
!! GACTTGTTCATTTTTCCCCC+TGG - chr6_1:54188325-54188344 Msa0888820:CDS 45.0%
!! TGTTCATTTTTCCCCCTGGA+TGG - chr6_1:54188329-54188348 Msa0888820:CDS 45.0%
!! GTTCATTTTTCCCCCTGGAT+GGG - chr6_1:54188330-54188349 Msa0888820:CDS 45.0%
!! TTCATTTTTCCCCCTGGATG+GGG - chr6_1:54188331-54188350 Msa0888820:CDS 45.0%
!! AGAAGCATCTCCAGTAGCAA+GGG + chr6_1:54188430-54188449 None:intergenic 45.0%
AGAAGAAGACAGTGTTGCCT+TGG - chr6_1:54188659-54188678 Msa0888820:intron 45.0%
AGAGAGGATCAAGAAGCTTC+GGG - chr6_1:54188797-54188816 Msa0888820:intron 45.0%
! TGAACGAAAAGCCTTGTCCA+TGG - chr6_1:54188875-54188894 Msa0888820:intron 45.0%
! ATTTTACCTGGCCATGGACA+AGG + chr6_1:54188889-54188908 None:intergenic 45.0%
AACTCCAGATGTCCAGTCTT+GGG + chr6_1:54189082-54189101 None:intergenic 45.0%
AAACTCCAGATGTCCAGTCT+TGG + chr6_1:54189083-54189102 None:intergenic 45.0%
TCTATTGGCCACACACTATC+AGG + chr6_1:54189117-54189136 None:intergenic 45.0%
AGTGTGTGGCCAATAGATCT+TGG - chr6_1:54189120-54189139 Msa0888820:intron 45.0%
GTGGCCAATAGATCTTGGAT+AGG - chr6_1:54189125-54189144 Msa0888820:intron 45.0%
CACACCTTGATTGGATGGTA+TGG + chr6_1:54189336-54189355 None:intergenic 45.0%
TACCATCCAATCAAGGTGTG+AGG - chr6_1:54189336-54189355 Msa0888820:intron 45.0%
ACCATCCAATCAAGGTGTGA+GGG - chr6_1:54189337-54189356 Msa0888820:intron 45.0%
GGGAGGTGATAGTAGTACTA+AGG - chr6_1:54189357-54189376 Msa0888820:intron 45.0%
TGCTTGTTCTCTCACTCGTT+TGG + chr6_1:54190042-54190061 None:intergenic 45.0%
!! ACAAGCAAGAGCATTAGAGG+AGG - chr6_1:54190055-54190074 Msa0888820:intron 45.0%
GAAGTTACATGGCTCAATGC+TGG - chr6_1:54190149-54190168 Msa0888820:intron 45.0%
AGTTACATGGCTCAATGCTG+GGG - chr6_1:54190151-54190170 Msa0888820:intron 45.0%
AACTCAAGGGTCAGTTGACA+GGG - chr6_1:54190184-54190203 Msa0888820:intron 45.0%
GATTAAAGATGCTGTAGGGG+GGG + chr6_1:54190536-54190555 None:intergenic 45.0%
GGTGTCTCTATTGAAGGACA+AGG + chr6_1:54190614-54190633 None:intergenic 45.0%
GTGTCTGGTGTCTCTATTGA+AGG + chr6_1:54190620-54190639 None:intergenic 45.0%
AATAGAGACACCAGACACAG+AGG - chr6_1:54190622-54190641 Msa0888820:CDS 45.0%
!!! AAAAAATTCTAAATTTTTTT+GGG + chr6_1:54183882-54183901 None:intergenic 5.0%
!!! TAAAAAATTCTAAATTTTTT+TGG + chr6_1:54183883-54183902 None:intergenic 5.0%
!!! ATGAATTTTTATATTTTTTA+TGG - chr6_1:54183921-54183940 Msa0888820:intron 5.0%
!!! TAAAAAATTCTAATTTTTTT+TGG - chr6_1:54183974-54183993 Msa0888820:intron 5.0%
!!! AAAAAATTCTAATTTTTTTT+GGG - chr6_1:54183975-54183994 Msa0888820:intron 5.0%
!!! TTTATTTTTATTTTTATTGA+AGG - chr6_1:54186234-54186253 Msa0888820:intron 5.0%
!!! AAAAATTATCTTTTATATAA+TGG + chr6_1:54186641-54186660 None:intergenic 5.0%
TGGTGGGGTTGAAGGCTAAT+CGG + chr6_1:54182354-54182373 None:intergenic 50.0%
! TGAGAAAGAGGGGGTTTGGT+GGG + chr6_1:54182370-54182389 None:intergenic 50.0%
ATGAGAAAGAGGGGGTTTGG+TGG + chr6_1:54182371-54182390 None:intergenic 50.0%
GTGATGAGAAAGAGGGGGTT+TGG + chr6_1:54182374-54182393 None:intergenic 50.0%
CTGACGTGATGAGAAAGAGG+GGG + chr6_1:54182379-54182398 None:intergenic 50.0%
! CAAAGAAGTGGTGGAAGACG+AGG + chr6_1:54182421-54182440 None:intergenic 50.0%
ATGGGTCGGGTCTGATTCTA+AGG - chr6_1:54182471-54182490 Msa0888820:three_prime_UTR 50.0%
TGGGTCGGGTCTGATTCTAA+GGG - chr6_1:54182472-54182491 Msa0888820:three_prime_UTR 50.0%
! GGGTCTGATTCTAAGGGTGA+TGG - chr6_1:54182478-54182497 Msa0888820:three_prime_UTR 50.0%
GTTGGTCCGATTCAGCAACT+GGG - chr6_1:54182509-54182528 Msa0888820:three_prime_UTR 50.0%
CAGTGACCCAGTTGCTGAAT+CGG + chr6_1:54182518-54182537 None:intergenic 50.0%
ATTGTGGAACAACGGCGGTT+TGG - chr6_1:54183236-54183255 Msa0888820:intron 50.0%
AGCATGACCTGGCATAGTTG+AGG - chr6_1:54184204-54184223 Msa0888820:intron 50.0%
CTTTCAGGAGTTGTGGGAGT+AGG - chr6_1:54184322-54184341 Msa0888820:CDS 50.0%
TTCAGGAGTTGTGGGAGTAG+GGG - chr6_1:54184324-54184343 Msa0888820:CDS 50.0%
GCCTTTGACAACACATCAGG+AGG - chr6_1:54184554-54184573 Msa0888820:CDS 50.0%
CTTGTTGCATGAGTCAGCTC+GGG - chr6_1:54184824-54184843 Msa0888820:intron 50.0%
GAATGCCAGGAGCAGAGAAA+AGG + chr6_1:54185391-54185410 None:intergenic 50.0%
GCAGAAACTACTGATGGAGC+AGG + chr6_1:54185413-54185432 None:intergenic 50.0%
TTTACAGGTGCCTCCAGGAA+AGG - chr6_1:54185436-54185455 Msa0888820:CDS 50.0%
GGCTGGATGCGTGGATAATA+TGG - chr6_1:54185858-54185877 Msa0888820:CDS 50.0%
! GGTATCGGAGTCCATTGATG+CGG + chr6_1:54185892-54185911 None:intergenic 50.0%
ACATCAGGCTCAATGACCTG+AGG + chr6_1:54187197-54187216 None:intergenic 50.0%
CGACGTGTGCATAAATCACC+AGG + chr6_1:54187224-54187243 None:intergenic 50.0%
TCGTGAATATGCTCGCTGGT+TGG - chr6_1:54187241-54187260 Msa0888820:intron 50.0%
GAAGACTGCACTGCTACTGA+GGG + chr6_1:54187746-54187765 None:intergenic 50.0%
TGAAGACTGCACTGCTACTG+AGG + chr6_1:54187747-54187766 None:intergenic 50.0%
CAAGATCCTGGCGCGATAAA+GGG + chr6_1:54187925-54187944 None:intergenic 50.0%
ACAAGATCCTGGCGCGATAA+AGG + chr6_1:54187926-54187945 None:intergenic 50.0%
GCTTCCTGAAGCTGACAGAA+AGG - chr6_1:54187976-54187995 Msa0888820:CDS 50.0%
GCAACCTTTCTGTCAGCTTC+AGG + chr6_1:54187983-54188002 None:intergenic 50.0%
CAGAAAGGTTGCTCAACTCG+CGG - chr6_1:54187991-54188010 Msa0888820:CDS 50.0%
ACTAGTGCAGGGCATGCATT+AGG + chr6_1:54188142-54188161 None:intergenic 50.0%
! TGATCTTTCTTCTGGGGAGC+AGG - chr6_1:54188165-54188184 Msa0888820:CDS 50.0%
! GATCTTTCTTCTGGGGAGCA+GGG - chr6_1:54188166-54188185 Msa0888820:CDS 50.0%
!! TCATTTTTCCCCCTGGATGG+GGG - chr6_1:54188332-54188351 Msa0888820:CDS 50.0%
ATGGGGGGGCTGTTTATTCA+AGG - chr6_1:54188348-54188367 Msa0888820:CDS 50.0%
TCCAGTAGCAAGGGCAATAG+CGG + chr6_1:54188421-54188440 None:intergenic 50.0%
!! CAGAAGCATCTCCAGTAGCA+AGG + chr6_1:54188431-54188450 None:intergenic 50.0%
TGCCTTGGAGAAAGAACGTG+CGG - chr6_1:54188674-54188693 Msa0888820:intron 50.0%
ATGTCCAGTCTTGGGCATGA+GGG + chr6_1:54189074-54189093 None:intergenic 50.0%
! CATCTGGAGTTTGACCCAAG+AGG - chr6_1:54189091-54189110 Msa0888820:intron 50.0%
CACACACTATCAGGCCTCTT+GGG + chr6_1:54189108-54189127 None:intergenic 50.0%
TCCCTCACACCTTGATTGGA+TGG + chr6_1:54189341-54189360 None:intergenic 50.0%
ATCCAATCAAGGTGTGAGGG+AGG - chr6_1:54189340-54189359 Msa0888820:intron 50.0%
ACCATAGTAGCAGACATGGG+AGG + chr6_1:54189480-54189499 None:intergenic 50.0%
TAGAGGAGGCTAGAGATCGT+TGG - chr6_1:54190069-54190088 Msa0888820:intron 50.0%
AGAGGAGGCTAGAGATCGTT+GGG - chr6_1:54190070-54190089 Msa0888820:intron 50.0%
AGAGATCGTTGGGAGAGACA+CGG - chr6_1:54190080-54190099 Msa0888820:intron 50.0%
GGAGAGACACGGAATCAAAG+TGG - chr6_1:54190091-54190110 Msa0888820:intron 50.0%
GAGACACGGAATCAAAGTGG+TGG - chr6_1:54190094-54190113 Msa0888820:intron 50.0%
AGGCTTCAGCCGAAGTTACA+TGG - chr6_1:54190138-54190157 Msa0888820:intron 50.0%
GGGAGCAGTACTCAACTCAA+GGG - chr6_1:54190171-54190190 Msa0888820:intron 50.0%
CAACTCAAGGGTCAGTTGAC+AGG - chr6_1:54190183-54190202 Msa0888820:intron 50.0%
TGGAGAAGCTGCCATCTCAA+AGG - chr6_1:54190358-54190377 Msa0888820:intron 50.0%
! TGACTTGCCTGCCTTTGAGA+TGG + chr6_1:54190372-54190391 None:intergenic 50.0%
GGCACTATGCTGTAACTCGT+GGG + chr6_1:54190396-54190415 None:intergenic 50.0%
CAGCATAGTGCCGTCGAATT+TGG - chr6_1:54190404-54190423 Msa0888820:intron 50.0%
! GAAGGTACAAAGCGAGTTGC+TGG - chr6_1:54190440-54190459 Msa0888820:intron 50.0%
AGCGAGTTGCTGGTGATTGT+AGG - chr6_1:54190450-54190469 Msa0888820:intron 50.0%
GCGAGTTGCTGGTGATTGTA+GGG - chr6_1:54190451-54190470 Msa0888820:intron 50.0%
GTTGCTGGTGATTGTAGGGA+AGG - chr6_1:54190455-54190474 Msa0888820:intron 50.0%
AATGACACAGCCTCTGTGTC+TGG + chr6_1:54190635-54190654 None:intergenic 50.0%
AGACACAGAGGCTGTGTCAT+TGG - chr6_1:54190634-54190653 Msa0888820:CDS 50.0%
!! GAGAAAGAGGGGGTTTGGTG+GGG + chr6_1:54182369-54182388 None:intergenic 55.0%
! GAAGTGGTGGAAGACGAGGT+TGG + chr6_1:54182417-54182436 None:intergenic 55.0%
TGCACGGAGCAAAGAAGTGG+TGG + chr6_1:54182430-54182449 None:intergenic 55.0%
TTGCTCCGTGCATAACGCCA+AGG - chr6_1:54182438-54182457 Msa0888820:three_prime_UTR 55.0%
!! AGGGTGATGGGTTATCGGGT+TGG - chr6_1:54182491-54182510 Msa0888820:three_prime_UTR 55.0%
! GGTTGGTCCGATTCAGCAAC+TGG - chr6_1:54182508-54182527 Msa0888820:three_prime_UTR 55.0%
CGATTCAGCAACTGGGTCAC+TGG - chr6_1:54182516-54182535 Msa0888820:three_prime_UTR 55.0%
TCGCATGAGAGAAGCCAGCT+AGG + chr6_1:54184428-54184447 None:intergenic 55.0%
! GGATCCCTTTTCTCTGCTCC+TGG - chr6_1:54185383-54185402 Msa0888820:intron 55.0%
ACTGATGGAGCAGGAATGCC+AGG + chr6_1:54185404-54185423 None:intergenic 55.0%
CACGTCCAACACTATTGGGC+TGG - chr6_1:54185841-54185860 Msa0888820:CDS 55.0%
CGCATCCAGCCCAATAGTGT+TGG + chr6_1:54185849-54185868 None:intergenic 55.0%
! ACACTATTGGGCTGGATGCG+TGG - chr6_1:54185849-54185868 Msa0888820:CDS 55.0%
TGGCAAGTGGACCGCATCAA+TGG - chr6_1:54185878-54185897 Msa0888820:CDS 55.0%
CACGTCGTGAATATGCTCGC+TGG - chr6_1:54187237-54187256 Msa0888820:intron 55.0%
! CGCTGGTTGGTATCTGCTAG+CGG - chr6_1:54187254-54187273 Msa0888820:intron 55.0%
CTGCTAGCGGTGCTCTTTCA+AGG - chr6_1:54187267-54187286 Msa0888820:intron 55.0%
TTTCCAGGCTTGGCAGAAGC+TGG - chr6_1:54187587-54187606 Msa0888820:CDS 55.0%
ACTGCACTGCTACTGAGGGT+GGG + chr6_1:54187742-54187761 None:intergenic 55.0%
!! CAGATGCTGCACCGACTTTC+TGG - chr6_1:54188091-54188110 Msa0888820:CDS 55.0%
! CATTTTTCCCCCTGGATGGG+GGG - chr6_1:54188333-54188352 Msa0888820:CDS 55.0%
! ATTTTTCCCCCTGGATGGGG+GGG - chr6_1:54188334-54188353 Msa0888820:CDS 55.0%
ATAAACAGCCCCCCCATCCA+GGG + chr6_1:54188345-54188364 None:intergenic 55.0%
AATAAACAGCCCCCCCATCC+AGG + chr6_1:54188346-54188365 None:intergenic 55.0%
AGCAAGGGCAATAGCGGCTT+GGG + chr6_1:54188415-54188434 None:intergenic 55.0%
TAGCAAGGGCAATAGCGGCT+TGG + chr6_1:54188416-54188435 None:intergenic 55.0%
AGCCGCACGTTCTTTCTCCA+AGG + chr6_1:54188679-54188698 None:intergenic 55.0%
! GAAAAGCCTTGTCCATGGCC+AGG - chr6_1:54188880-54188899 Msa0888820:intron 55.0%
GATGTCCAGTCTTGGGCATG+AGG + chr6_1:54189075-54189094 None:intergenic 55.0%
CATGCCCAAGACTGGACATC+TGG - chr6_1:54189075-54189094 Msa0888820:intron 55.0%
CCACACACTATCAGGCCTCT+TGG + chr6_1:54189109-54189128 None:intergenic 55.0%
! CCAAGAGGCCTGATAGTGTG+TGG - chr6_1:54189106-54189125 Msa0888820:intron 55.0%
CACCTCCCTCACACCTTGAT+TGG + chr6_1:54189345-54189364 None:intergenic 55.0%
GCCTCCCATGTCTGCTACTA+TGG - chr6_1:54189476-54189495 Msa0888820:intron 55.0%
TGGAATCAGGACTTGGGCAG+AGG - chr6_1:54190010-54190029 Msa0888820:intron 55.0%
GGGGAGCAGTACTCAACTCA+AGG - chr6_1:54190170-54190189 Msa0888820:intron 55.0%
CGAATGGGTGCAGATCTCAG+AGG - chr6_1:54190233-54190252 Msa0888820:intron 55.0%
GAAGCTGCCATCTCAAAGGC+AGG - chr6_1:54190362-54190381 Msa0888820:intron 55.0%
CGGCACTATGCTGTAACTCG+TGG + chr6_1:54190397-54190416 None:intergenic 55.0%
!! AGGGGGTTTGGTGGGGTTGA+AGG + chr6_1:54182362-54182381 None:intergenic 60.0%
TCCGTGCATAACGCCAAGGC+CGG - chr6_1:54182442-54182461 Msa0888820:three_prime_UTR 60.0%
!! AAGGCCGGCTCTGAATGGGT+CGG - chr6_1:54182457-54182476 Msa0888820:three_prime_UTR 60.0%
AGACCCGACCCATTCAGAGC+CGG + chr6_1:54182464-54182483 None:intergenic 60.0%
GTTGTGGGAGTAGGGGTTGC+TGG - chr6_1:54184331-54184350 Msa0888820:CDS 60.0%
GCAGCTTTACAGGTGCCTCC+AGG - chr6_1:54185431-54185450 Msa0888820:CDS 60.0%
AGTCCAGCTTCTGCCAAGCC+TGG + chr6_1:54187593-54187612 None:intergenic 60.0%
GACTGCACTGCTACTGAGGG+TGG + chr6_1:54187743-54187762 None:intergenic 60.0%
TAAACAGCCCCCCCATCCAG+GGG + chr6_1:54188344-54188363 None:intergenic 60.0%
!! GCGGCTTGGGCTTTTGTCAC+AGG + chr6_1:54188402-54188421 None:intergenic 60.0%
GCCGCTATTGCCCTTGCTAC+TGG - chr6_1:54188417-54188436 Msa0888820:CDS 60.0%
ACCTCCCTCATGCCCAAGAC+TGG - chr6_1:54189067-54189086 Msa0888820:intron 60.0%
TCCAGTCTTGGGCATGAGGG+AGG + chr6_1:54189071-54189090 None:intergenic 60.0%
GGTTGACGAAGACCTCCGCA+AGG - chr6_1:54190115-54190134 Msa0888820:intron 60.0%
TGACGAAGACCTCCGCAAGG+AGG - chr6_1:54190118-54190137 Msa0888820:intron 60.0%
CTTCGGCTGAAGCCTCCTTG+CGG + chr6_1:54190133-54190152 None:intergenic 60.0%
GCCGGCCTTGGCGTTATGCA+CGG + chr6_1:54182446-54182465 None:intergenic 65.0%
!! ACGCCAAGGCCGGCTCTGAA+TGG - chr6_1:54182452-54182471 Msa0888820:three_prime_UTR 65.0%
!! CGCCAAGGCCGGCTCTGAAT+GGG - chr6_1:54182453-54182472 Msa0888820:three_prime_UTR 65.0%
GACCCATTCAGAGCCGGCCT+TGG + chr6_1:54182458-54182477 None:intergenic 65.0%
!! AGGCCGGCTCTGAATGGGTC+GGG - chr6_1:54182458-54182477 Msa0888820:three_prime_UTR 65.0%
CTGCAGCCCTTTATCGCGCC+AGG - chr6_1:54187916-54187935 Msa0888820:CDS 65.0%
CGCGCCAGGATCTTGTCAGC+TGG - chr6_1:54187930-54187949 Msa0888820:CDS 65.0%
AAACAGCCCCCCCATCCAGG+GGG + chr6_1:54188343-54188362 None:intergenic 65.0%
CGGCTGAAGCCTCCTTGCGG+AGG + chr6_1:54190130-54190149 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 54182211 54190899 54182211 ID=Msa0888820;Name=Msa0888820
chr6_1 mRNA 54182211 54190899 54182211 ID=Msa0888820-mRNA-1;Parent=Msa0888820;Name=Msa0888820-mRNA-1;_AED=0.05;_eAED=0.05;_QI=96|0.88|0.9|1|1|1|10|376|947
chr6_1 exon 54182211 54183091 54182211 ID=Msa0888820-mRNA-1:exon:10903;Parent=Msa0888820-mRNA-1
chr6_1 exon 54184209 54184716 54184209 ID=Msa0888820-mRNA-1:exon:10902;Parent=Msa0888820-mRNA-1
chr6_1 exon 54184902 54185016 54184902 ID=Msa0888820-mRNA-1:exon:10901;Parent=Msa0888820-mRNA-1
chr6_1 exon 54185113 54185188 54185113 ID=Msa0888820-mRNA-1:exon:10900;Parent=Msa0888820-mRNA-1
chr6_1 exon 54185417 54185516 54185417 ID=Msa0888820-mRNA-1:exon:10899;Parent=Msa0888820-mRNA-1
chr6_1 exon 54185602 54185705 54185602 ID=Msa0888820-mRNA-1:exon:10898;Parent=Msa0888820-mRNA-1
chr6_1 exon 54185822 54185910 54185822 ID=Msa0888820-mRNA-1:exon:10897;Parent=Msa0888820-mRNA-1
chr6_1 exon 54187587 54188575 54187587 ID=Msa0888820-mRNA-1:exon:10896;Parent=Msa0888820-mRNA-1
chr6_1 exon 54188695 54188781 54188695 ID=Msa0888820-mRNA-1:exon:10895;Parent=Msa0888820-mRNA-1
chr6_1 exon 54190533 54190899 54190533 ID=Msa0888820-mRNA-1:exon:10894;Parent=Msa0888820-mRNA-1
chr6_1 five_prime_UTR 54190804 54190899 54190804 ID=Msa0888820-mRNA-1:five_prime_utr;Parent=Msa0888820-mRNA-1
chr6_1 CDS 54190533 54190803 54190533 ID=Msa0888820-mRNA-1:cds;Parent=Msa0888820-mRNA-1
chr6_1 CDS 54188695 54188781 54188695 ID=Msa0888820-mRNA-1:cds;Parent=Msa0888820-mRNA-1
chr6_1 CDS 54187587 54188575 54187587 ID=Msa0888820-mRNA-1:cds;Parent=Msa0888820-mRNA-1
chr6_1 CDS 54185822 54185910 54185822 ID=Msa0888820-mRNA-1:cds;Parent=Msa0888820-mRNA-1
chr6_1 CDS 54185602 54185705 54185602 ID=Msa0888820-mRNA-1:cds;Parent=Msa0888820-mRNA-1
chr6_1 CDS 54185417 54185516 54185417 ID=Msa0888820-mRNA-1:cds;Parent=Msa0888820-mRNA-1
chr6_1 CDS 54185113 54185188 54185113 ID=Msa0888820-mRNA-1:cds;Parent=Msa0888820-mRNA-1
chr6_1 CDS 54184902 54185016 54184902 ID=Msa0888820-mRNA-1:cds;Parent=Msa0888820-mRNA-1
chr6_1 CDS 54184209 54184716 54184209 ID=Msa0888820-mRNA-1:cds;Parent=Msa0888820-mRNA-1
chr6_1 CDS 54182587 54183091 54182587 ID=Msa0888820-mRNA-1:cds;Parent=Msa0888820-mRNA-1
chr6_1 three_prime_UTR 54182211 54182586 54182211 ID=Msa0888820-mRNA-1:three_prime_utr;Parent=Msa0888820-mRNA-1
Gene Sequence

>Msa0888820

ATGGCTTCAATTTCACCCACATGTTCACCAACATCTCTTCAACTCCGATTAGCCTTCAACCCCACCAAACCCCCTCTTTCTCATCACGTCAGACTTCGCAACATCAACCAACCTCGTCTTCCACCACTTCTTTGCTCCGTGCATAACGCCAAGGCCGGCTCTGAATGGGTCGGGTCTGATTCTAAGGGTGATGGGTTATCGGGTTGGTCCGATTCAGCAACTGGGTCACTGGATAATGATTCCCAGAAGAAGAAGAAGGAATCTTTTGGAGGAGTTGTGGGAGTAGGGGTTGCTGGAGTCCTTCTTTTTACCGGGCTTACCTATTTTGCCTTATCTCTTGGAAAACGAAATGGTTCCAAAGAGGAGCAACAATTGAAGCCTTTGACAACACATCAGGAGGTGCTTTTGTCTTCTGATGCCGATATTACAGGACAAGTAAATGCTGAGAACAAGTTGGAGCAAGAAAATGGTAAATTGGAAGGTCAGATAGATACATCCCGGGATTATTCATCTCCTGAGTCCGATATCATTCAAGGTGACTATAGAACTATTGATGATTCTGATATAGGATCGGAGTTGGTATACGATAGCAAAAACACCTCCAATGGTATCAATGATGCCACTGAATATATATCTGTTCAAGAAGACTTGTTGCATGAGTCAGCTCGGGATGACGAGTTAATTGTTCCCAGTGAAAACCAAATACCACTTCAAACTGAAAATACTCTTGATTCTTTTAGTGATTTTGATAGCAATTCGGCTGTAGATAAAACAGAATCTACTGCCTATCTTAAAGAAAACCAATTTAATGCTGAACCAGAAAACATACCCAATTATGATGGTAAGCCAGTAGACCTTAATAATGAGCAGCAGGATGAAATAACCAGTTCAAGTGAGATTAGAAATTCTGATATTTCCAAAACCTCATCTGGTTTAGGTGCTGATAATAAGACTGAAACTGTTAGTACTGTGGTAAATCCTGAGTCAAACAACACAATTTCTGACCCTAAGATTTTAAGCGAAGATGATCAAGACAATATTGGCCTTAACAAAACTCAACAGGTCTTATATGAGGAACAGAGTATCCCTGGAAATGACCATTTAAGTAAATCAGTATTCTCACCATTGACCAATTCATCATTGGATGATCAGGTTAGAAATGAGAATAATGAGATTAATAAAGAAATTTCTGAATCTCCAAATTCTGGATCCCTTTTCTCTGCTCCTGGCATTCCTGCTCCATCAGTAGTTTCTGCAGCTTTACAGGTGCCTCCAGGAAAGGTTTTGATTCCTGCAGCTTTTGATCAGGTTCAGGGACATGCACTAGCTGCATTGCAAGTTTTAAAGGTCATTGAGCCTGATGTTCAACCTGGTGATTTATGCACACGTCGTGAATATGCTCGCTGGTTGGTATCTGCTAGCGGTGCTCTTTCAAGGAATGCGGTTTCGAAAGTGTATCCTGCCATGTACATAGATAATGCTACTGAACTTGCATTTGATGACATCACCCCTGAGGACCCTGATTTTTCTTCCATTCAAGGCTTGGCAGAAGCTGGACTTATTGAAAGCAGGCTCTCAAGACGTGATGCACAGTTGTCTGCTAATGAAGACAATAGCCCTTTTTACTTCTCCCCTGAAAGCCCTTTATCGCGCCAGGATCTTGTCAGCTGGAAAATGGCCCTAGAGAAAAGACAGCTTCCTGAAGCTGACAGAAAGATGCTGCACCGACTTTCTGGTTTTATAGACACTGATAAGATACATCCTAATGCATGCCCTGCACTAGTAGCTGATCTTTCTTCTGGGGAGCAGGGAATAATTGCTCTTGCATTTGATAAACCTGTGACAAAAGCCCAAGCCGCTATTGCCCTTGCTACTGGAGATGCTTCTGACATAGTTAGTGAAGAGCTTGCACGCATTGAAGCAGAATCTATTGCTGAAAATGCTGTTGCTGCACATAGTGCTTTAGTAGCTCAAGTTGAGAGAGATATTAATGCCAGTTATGAACAGGAGCTTTTGTTAGAGAGGGAAAAGATCAATGCAATTGAAAAAATGGCTGAAGAGGCAAAACATGAGTTGGAAACGTTAAGAGCTCAGAGAGAAGAAGACAGTGTTGCCTTGGAGAAAGAACGTGCGGCTATTGAATCAGAAATGGAGGTTTTTTCAAAGTTAAGGAATGAGGTTCAGGATCAATTACAAAGTCTAATGAGTAACAAGGTAGAAATAGCATATGAAAAAGAGAGGATCAAGAAGCTTCGGGAGCAGACAGAAATTGAAAACAACGAGATTACCCGTTTACAGTATGATCTAGAGGTTGAACGAAAAGCCTTGTCCATGGCCAGGACTTGGGCAGAGGATGAAGCCAAACGAGTGAGAGAACAAGCAAGAGCATTAGAGGAGGCTAGAGATCGTTGGGAGAGACACGGAATCAAAGTGGTGGTTGACGAAGACCTCCGCAAGGAGGCTTCAGCCGAAGTTACATGGCTCAATGCTGGGGAGCAGTACTCAACTCAAGGGTCAGTTGACAGGGCTGAAAGATTATTGGAGAAGCTCAAACGAATGGGTGCAGATCTCAGAGGAAAATGCAGAGAAACAATTGACAAGATCATCCTCATGGTTTCCCAATTTATATCAAAATTGAAGGAATGGGCCTCCAAAACAAAATTACAGGCTGAAGAATTTGGAGAAGCTGCCATCTCAAAGGCAGGCAAGTCAGCCCACGAGTTACAGCATAGTGCCGTCGAATTTGGATTAACTGTAAAAGAAGGTACAAAGCGAGTTGCTGGTGATTGTAGGGAAGGAGTTGAGAAAATCACCCAAAAGTTCGCTCATAAGTTCAAGACTTGA
Protein sequence

>Msa0888820

MASISPTCSPTSLQLRLAFNPTKPPLSHHVRLRNINQPRLPPLLCSVHNAKAGSEWVGSDSKGDGLSGWSDSATGSLDNDSQKKKKESFGGVVGVGVAGVLLFTGLTYFALSLGKRNGSKEEQQLKPLTTHQEVLLSSDADITGQVNAENKLEQENGKLEGQIDTSRDYSSPESDIIQGDYRTIDDSDIGSELVYDSKNTSNGINDATEYISVQEDLLHESARDDELIVPSENQIPLQTENTLDSFSDFDSNSAVDKTESTAYLKENQFNAEPENIPNYDGKPVDLNNEQQDEITSSSEIRNSDISKTSSGLGADNKTETVSTVVNPESNNTISDPKILSEDDQDNIGLNKTQQVLYEEQSIPGNDHLSKSVFSPLTNSSLDDQVRNENNEINKEISESPNSGSLFSAPGIPAPSVVSAALQVPPGKVLIPAAFDQVQGHALAALQVLKVIEPDVQPGDLCTRREYARWLVSASGALSRNAVSKVYPAMYIDNATELAFDDITPEDPDFSSIQGLAEAGLIESRLSRRDAQLSANEDNSPFYFSPESPLSRQDLVSWKMALEKRQLPEADRKMLHRLSGFIDTDKIHPNACPALVADLSSGEQGIIALAFDKPVTKAQAAIALATGDASDIVSEELARIEAESIAENAVAAHSALVAQVERDINASYEQELLLEREKINAIEKMAEEAKHELETLRAQREEDSVALEKERAAIESEMEVFSKLRNEVQDQLQSLMSNKVEIAYEKERIKKLREQTEIENNEITRLQYDLEVERKALSMARTWAEDEAKRVREQARALEEARDRWERHGIKVVVDEDLRKEASAEVTWLNAGEQYSTQGSVDRAERLLEKLKRMGADLRGKCRETIDKIILMVSQFISKLKEWASKTKLQAEEFGEAAISKAGKSAHELQHSAVEFGLTVKEGTKRVAGDCREGVEKITQKFAHKFKT*