AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1035640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1035640 MtrunA17_Chr7g0259841 97.855 373 7 1 1 372 1 373 0.0 739
Msa1035640 MtrunA17_Chr7g0257311 30.222 225 137 5 96 307 24 241 2.63e-23 99.8
Msa1035640 MtrunA17_Chr4g0042571 26.354 277 170 9 109 372 198 453 7.31e-16 79.0
Msa1035640 MtrunA17_Chr2g0317811 25.979 281 166 9 109 372 206 461 1.29e-15 78.2
Msa1035640 MtrunA17_Chr1g0170031 29.756 205 122 5 118 302 144 346 8.92e-15 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1035640 AT4G02790.1 62.670 367 119 5 23 371 5 371 3.47e-165 467
Msa1035640 AT2G41670.1 31.718 227 131 5 96 307 26 243 5.18e-26 108
Msa1035640 AT3G07050.1 29.897 291 168 9 108 372 128 408 6.77e-20 91.7
Msa1035640 AT4G10650.1 28.095 210 129 7 97 288 27 232 5.16e-14 73.2
Msa1035640 AT1G52980.1 26.007 273 158 10 109 362 208 455 1.27e-13 72.8

Find 103 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGTGGAGATAGAGAATT+TGG 0.206923 7_1:+71618575 None:intergenic
CACTCAATGTTGTAGATAAT+TGG 0.235236 7_1:-71618070 Msa1035640:intron
CATCATCATCATCTTGCTTA+TGG 0.251466 7_1:-71618601 Msa1035640:CDS
ATGAAAGGTGGGTTCGATTT+GGG 0.264909 7_1:-71615024 Msa1035640:intron
ACTCCTGGCCTTGGAGCTGC+TGG 0.275454 7_1:+71615909 None:intergenic
AGCTTCAGAGTCTTGCTTCT+TGG 0.276638 7_1:+71614348 None:intergenic
GGTATTGGACAGTGGTTTCC+TGG 0.286100 7_1:-71617870 Msa1035640:intron
TATGAAAGGTGGGTTCGATT+TGG 0.308400 7_1:-71615025 Msa1035640:intron
AATTGTGGAGAAATTGAAAT+TGG 0.308735 7_1:+71618557 None:intergenic
GAGGGACTGGGACCGATCTT+TGG 0.309126 7_1:-71618021 Msa1035640:CDS
TGGGAAAGATCTTGAGTTGC+TGG 0.317900 7_1:-71615005 Msa1035640:CDS
ATTGGCAACAACACATTTGA+TGG 0.320305 7_1:-71618052 Msa1035640:CDS
ATCTCAATCTCCCACCATTC+AGG 0.333290 7_1:-71618474 Msa1035640:intron
CTTGAGTTGCTGGACTCTCC+TGG 0.351077 7_1:-71614995 Msa1035640:CDS
ACACTATAATAATGTTAGTA+TGG 0.352371 7_1:+71614072 None:intergenic
CTTGCGCTTCATTTGTTCAA+TGG 0.362304 7_1:-71614472 Msa1035640:CDS
TAGGTTTGGTTGGACTTCAT+TGG 0.373097 7_1:-71614401 Msa1035640:CDS
CTGCTAATTCCTTTGCTAAC+CGG 0.374309 7_1:+71616772 None:intergenic
GTTGATGGATGTTGTTATAG+AGG 0.386526 7_1:-71617805 Msa1035640:CDS
GTCTTCTCCAATGGGCAGCT+TGG 0.417848 7_1:-71616907 Msa1035640:CDS
CAAGGAACAACTTAAGTTGA+TGG 0.420000 7_1:-71617820 Msa1035640:CDS
CTCCAATGGGCAGCTTGGAA+TGG 0.425085 7_1:-71616902 Msa1035640:intron
GATGGTTCCGAAGGAGGGAC+TGG 0.425895 7_1:-71618034 Msa1035640:CDS
GGAGATTGAGATTGGAGGGT+TGG 0.441330 7_1:+71618485 None:intergenic
TAGGTTCGAGCTGGAATAGT+TGG 0.444220 7_1:-71615990 Msa1035640:CDS
GAACTTTGTATGAAGATTTG+AGG 0.444534 7_1:-71614236 Msa1035640:three_prime_UTR
CTCTCCAATGTCATCACATA+TGG 0.452328 7_1:+71614925 None:intergenic
CAGCTGATGTAAATGTTAAA+CGG 0.455115 7_1:-71616752 Msa1035640:CDS
ATCGGTCCCAGTCCCTCCTT+CGG 0.468176 7_1:+71618027 None:intergenic
TGCCCAGCAGCTCCAAGGCC+AGG 0.470383 7_1:-71615912 Msa1035640:CDS
AACTGCAGATCGAAATGCTT+GGG 0.470581 7_1:-71616962 Msa1035640:CDS
CTCAAATCTCTTGTAACTCC+TGG 0.470935 7_1:+71615894 None:intergenic
ACATTCTTCTCTTTAACAAA+CGG 0.471895 7_1:+71615934 None:intergenic
TTATTCCCACCCGCAGTAGC+AGG 0.476643 7_1:-71618535 Msa1035640:CDS
TTAGAAAAGGTAGGTTTGGT+TGG 0.479606 7_1:-71614411 Msa1035640:CDS
TCATATTGCAAAAGCAGAAA+AGG 0.487875 7_1:-71617847 Msa1035640:CDS
CAAAGGACTACTTCCTCGTC+CGG 0.491033 7_1:-71616724 Msa1035640:intron
ACAAAGGTTGTCTTCTCCAA+TGG 0.491090 7_1:-71616916 Msa1035640:CDS
CTCCTGGCCTTGGAGCTGCT+GGG 0.493561 7_1:+71615910 None:intergenic
CGGACGAGGAAGTAGTCCTT+TGG 0.500629 7_1:+71616725 None:intergenic
GAATGGTGGGAGATTGAGAT+TGG 0.500709 7_1:+71618477 None:intergenic
ATGGTTCCGAAGGAGGGACT+GGG 0.508412 7_1:-71618033 Msa1035640:CDS
AACCATTCCAAGCTGCCCAT+TGG 0.512603 7_1:+71616900 None:intergenic
TTGACACTGATCTTTATCAC+TGG 0.513007 7_1:-71617991 Msa1035640:CDS
CAAAGGTTGTCTTCTCCAAT+GGG 0.513498 7_1:-71616915 Msa1035640:CDS
TGAGTTCTGTAGTCTGCACC+TGG 0.514603 7_1:+71614299 None:intergenic
TTGAGTTGCTGGACTCTCCT+GGG 0.515009 7_1:-71614994 Msa1035640:CDS
CAGGAGTTACAAGAGATTTG+AGG 0.515630 7_1:-71615893 Msa1035640:intron
TCTCTTGTAACTCCTGGCCT+TGG 0.519921 7_1:+71615900 None:intergenic
TTGTAGATGGATCTATGGCT+TGG 0.521384 7_1:-71617030 Msa1035640:intron
AGGTTCGAGCTGGAATAGTT+GGG 0.525535 7_1:-71615989 Msa1035640:CDS
GACTGGTCACTGATTCGCAT+TGG 0.525801 7_1:+71614965 None:intergenic
GGAGAACCTGCTACTGCGGG+TGG 0.532796 7_1:+71618529 None:intergenic
TGTGGAGAAATTGAAATTGG+TGG 0.533927 7_1:+71618560 None:intergenic
CATTTGATGGTTCCGAAGGA+GGG 0.543043 7_1:-71618039 Msa1035640:CDS
TTGTTATAGAGGTACGAGAC+GGG 0.546757 7_1:-71617794 Msa1035640:CDS
TGGTGGGAGATTGAGATTGG+AGG 0.546785 7_1:+71618480 None:intergenic
TGATGATACATACCTACTGT+TGG 0.554845 7_1:+71614845 None:intergenic
CTGCGGGTGGGAATAAATTG+TGG 0.555305 7_1:+71618542 None:intergenic
AAGTGGAGAACCTGCTACTG+CGG 0.555716 7_1:+71618525 None:intergenic
AAATTACGCTAGAGAAATCC+AGG 0.558346 7_1:-71614317 Msa1035640:three_prime_UTR
TTCTAAAATCTGACAGGACA+CGG 0.558450 7_1:+71614428 None:intergenic
AATAGTTGGGTACCCTAATG+TGG 0.558464 7_1:-71615976 Msa1035640:CDS
ACTTACCTGTGGATGACTTG+TGG 0.559160 7_1:+71617758 None:intergenic
ATTCGCATTGGAAGTATCCC+AGG 0.560318 7_1:+71614977 None:intergenic
TGATATACTCCGACTGTGAA+TGG 0.561974 7_1:-71614265 Msa1035640:three_prime_UTR
GGTGGGAGATTGAGATTGGA+GGG 0.562781 7_1:+71618481 None:intergenic
CAACTGCAGATCGAAATGCT+TGG 0.565332 7_1:-71616963 Msa1035640:CDS
ACATTTGATGGTTCCGAAGG+AGG 0.568118 7_1:-71618040 Msa1035640:CDS
CACATACTAAATACCTGCAC+AGG 0.571976 7_1:+71617953 None:intergenic
TAGAAGCAACCTACCGGACG+AGG 0.573378 7_1:+71616711 None:intergenic
AGGGTTGGTGTGGCAGCGAG+AGG 0.574193 7_1:+71618500 None:intergenic
GTCAAGACCAGTCCAAAGAT+CGG 0.574666 7_1:+71618009 None:intergenic
ACTATTGTATAGGTTCGAGC+TGG 0.578842 7_1:-71615999 Msa1035640:intron
GTCGGAGTATATCAGCATGC+AGG 0.579879 7_1:+71614274 None:intergenic
TTGAGATTGGAGGGTTGGTG+TGG 0.584151 7_1:+71618490 None:intergenic
AGTGGAGAACCTGCTACTGC+GGG 0.585138 7_1:+71618526 None:intergenic
AACACATTTGATGGTTCCGA+AGG 0.589714 7_1:-71618043 Msa1035640:CDS
AAAAGCAGAAAAGGAACTCA+AGG 0.594084 7_1:-71617838 Msa1035640:CDS
GAATGTGCCCAGCAGCTCCA+AGG 0.594202 7_1:-71615917 Msa1035640:CDS
AGGGCACATTGAAGCTAGGC+CGG 0.597091 7_1:-71616791 Msa1035640:CDS
CTTACAAAACTTCCAACAGT+AGG 0.597306 7_1:-71614857 Msa1035640:intron
AATGTTAAACGGAGAGCCAA+AGG 0.598690 7_1:-71616741 Msa1035640:CDS
TTCTTGACACCATTCACAGT+CGG 0.602537 7_1:+71614256 None:intergenic
GTACAGGGCACATTGAAGCT+AGG 0.604959 7_1:-71616795 Msa1035640:intron
GTTGTCCACAAGTCATCCAC+AGG 0.607084 7_1:-71617763 Msa1035640:intron
GAAGCTAGGCCGGTTAGCAA+AGG 0.608408 7_1:-71616781 Msa1035640:CDS
ACTGGGACCGATCTTTGGAC+TGG 0.609653 7_1:-71618016 Msa1035640:CDS
TGATCTTTATCACTGGACAA+AGG 0.621272 7_1:-71617984 Msa1035640:CDS
CTTGCCATATGTGATGACAT+TGG 0.632886 7_1:-71614929 Msa1035640:CDS
TTTCGTGTAGACAGTGAATG+TGG 0.640512 7_1:-71614692 Msa1035640:CDS
ATAGTTGGGTACCCTAATGT+GGG 0.643817 7_1:-71615975 Msa1035640:CDS
TGTGGCAGCGAGAGGTGAAG+TGG 0.645729 7_1:+71618508 None:intergenic
GAGAACCTGCTACTGCGGGT+GGG 0.654778 7_1:+71618530 None:intergenic
AACATCTGACTTCACCTAGG+TGG 0.671078 7_1:+71614373 None:intergenic
GCAAACATCTGACTTCACCT+AGG 0.683711 7_1:+71614370 None:intergenic
AGCACTAGCAGCAATAAACA+TGG 0.690155 7_1:-71618651 Msa1035640:exon
CTTCATTGGAGAGACCACCT+AGG 0.694063 7_1:-71614387 Msa1035640:CDS
TGGAGAGAGGTCTTATGATG+TGG 0.703310 7_1:-71614909 Msa1035640:CDS
TTATAGAGGTACGAGACGGG+CGG 0.703873 7_1:-71617791 Msa1035640:CDS
TATGTGATGACATTGGAGAG+AGG 0.708423 7_1:-71614922 Msa1035640:CDS
TGTGGATGACTTGTGGACAA+CGG 0.717355 7_1:+71617765 None:intergenic
GTTGTTATAGAGGTACGAGA+CGG 0.721407 7_1:-71617795 Msa1035640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATAAAATAAAATT+AGG + chr7_1:71618166-71618185 None:intergenic 0.0%
!!! GTTTTTTGATATAAATTTAA+GGG + chr7_1:71614115-71614134 None:intergenic 10.0%
!! GTGAAAAAATAATAATATTA+CGG + chr7_1:71614656-71614675 None:intergenic 10.0%
!!! ATATTTTTTAAACATTGAAT+TGG + chr7_1:71615659-71615678 None:intergenic 10.0%
!! AAAAAAAAAATAATCACAAT+TGG + chr7_1:71616128-71616147 None:intergenic 10.0%
!!! ATTTCTTATTTACAAAATAA+AGG - chr7_1:71616462-71616481 Msa1035640:intron 10.0%
!! AATAAATAAAATACTAAAGA+TGG + chr7_1:71617399-71617418 None:intergenic 10.0%
!! TATATAAAATAAAATTAGGA+AGG + chr7_1:71618162-71618181 None:intergenic 10.0%
!!! CGTTTTTTGATATAAATTTA+AGG + chr7_1:71614116-71614135 None:intergenic 15.0%
!!! AAGAAATAACTTATTTTTGT+AGG - chr7_1:71616233-71616252 Msa1035640:intron 15.0%
!!! AGAAATAACTTATTTTTGTA+GGG - chr7_1:71616234-71616253 Msa1035640:intron 15.0%
!!! AATGATTTGTAAACAATTAA+AGG + chr7_1:71616715-71616734 None:intergenic 15.0%
!! AAAACATCAAAAAATTTGAA+TGG - chr7_1:71617154-71617173 Msa1035640:intron 15.0%
!! TTGCAATTAATCAATTTATT+TGG - chr7_1:71617340-71617359 Msa1035640:intron 15.0%
!!! GCTAGTATTTTTTTTATAAT+TGG + chr7_1:71617477-71617496 None:intergenic 15.0%
!!! TTTTGAAAATTTAGTTTCTA+AGG - chr7_1:71617559-71617578 Msa1035640:intron 15.0%
!!! TCTTATTTCATTAATATGAA+AGG - chr7_1:71617763-71617782 Msa1035640:intron 15.0%
!!! AAAATCTTTTAGATTGAAGA+AGG + chr7_1:71614023-71614042 None:intergenic 20.0%
!!! CTTCAATCTAAAAGATTTTA+CGG - chr7_1:71614024-71614043 Msa1035640:three_prime_UTR 20.0%
!!! AACACATGAAATTCAATTTT+GGG + chr7_1:71614357-71614376 None:intergenic 20.0%
!! CAAAAAACAGAACTTAAATT+AGG + chr7_1:71614584-71614603 None:intergenic 20.0%
!!! CTAATTTAAGTTCTGTTTTT+TGG - chr7_1:71614582-71614601 Msa1035640:intron 20.0%
!! AAATAATAATATTACGGTGA+CGG + chr7_1:71614650-71614669 None:intergenic 20.0%
!! TAACATTGCTAATAATCTAA+CGG + chr7_1:71614695-71614714 None:intergenic 20.0%
!! ATGATAAACAATTGTTGAAT+AGG + chr7_1:71615445-71615464 None:intergenic 20.0%
!! TACTTATGAAACAAATATTG+TGG + chr7_1:71615624-71615643 None:intergenic 20.0%
!! CAACTTAATGAAAAATTAAG+AGG + chr7_1:71615740-71615759 None:intergenic 20.0%
!!! TGGTAATAAAAAGAGAATTT+TGG - chr7_1:71615792-71615811 Msa1035640:intron 20.0%
!! TATTATCATAAAATTAGCAC+AGG + chr7_1:71616163-71616182 None:intergenic 20.0%
!!! TGTGCTAATTTTATGATAAT+AGG - chr7_1:71616162-71616181 Msa1035640:intron 20.0%
!! ACATTCATAAAACAATGTTA+AGG + chr7_1:71616374-71616393 None:intergenic 20.0%
!! TTCAAAATCTAATATTAGCT+GGG + chr7_1:71616539-71616558 None:intergenic 20.0%
!! ATTCAAAATCTAATATTAGC+TGG + chr7_1:71616540-71616559 None:intergenic 20.0%
!! AACATTAACAAAATAACAGT+TGG + chr7_1:71616603-71616622 None:intergenic 20.0%
!!! ATGTTCATTATTTTGTACTA+TGG - chr7_1:71616618-71616637 Msa1035640:intron 20.0%
!! ATTTCATGATACTATTGTAT+AGG - chr7_1:71616793-71616812 Msa1035640:intron 20.0%
!! TTTATTTCCTTAAATATCTC+CGG - chr7_1:71616944-71616963 Msa1035640:CDS 20.0%
!!! CATGTTTAAAACAAAAAACA+GGG + chr7_1:71617062-71617081 None:intergenic 20.0%
!! TATTTCATTAATATGAAAGG+TGG - chr7_1:71617766-71617785 Msa1035640:CDS 20.0%
!! ATTTCATTAATATGAAAGGT+GGG - chr7_1:71617767-71617786 Msa1035640:CDS 20.0%
!! TAACTAAAATATGATTCCAA+GGG + chr7_1:71617993-71618012 None:intergenic 20.0%
!! TTAACTAAAATATGATTCCA+AGG + chr7_1:71617994-71618013 None:intergenic 20.0%
!!! ATTGCTTCAAATATTTTGTT+TGG + chr7_1:71618596-71618615 None:intergenic 20.0%
!!! AGTACCATGTAATTATTTTT+TGG - chr7_1:71618633-71618652 Msa1035640:CDS 20.0%
!! ACACTATAATAATGTTAGTA+TGG + chr7_1:71618733-71618752 None:intergenic 20.0%
!! AAAAGATTTTACGGAACAAA+AGG - chr7_1:71614033-71614052 Msa1035640:three_prime_UTR 25.0%
! AATTGTGGAGAAATTGAAAT+TGG + chr7_1:71614248-71614267 None:intergenic 25.0%
!! GAACACATGAAATTCAATTT+TGG + chr7_1:71614358-71614377 None:intergenic 25.0%
!! AAACAGGAAATGAACATTTT+TGG + chr7_1:71615075-71615094 None:intergenic 25.0%
!! CATAGAATAAAGGTATAAAC+AGG + chr7_1:71615091-71615110 None:intergenic 25.0%
! AAAATGTACCAATCAGATAA+CGG + chr7_1:71615386-71615405 None:intergenic 25.0%
! TTATAGATAGCTTATGAAGA+TGG + chr7_1:71615513-71615532 None:intergenic 25.0%
! TTCGAAAAAACTTACAAAAG+TGG + chr7_1:71615537-71615556 None:intergenic 25.0%
!! CTTTTCTATATCCAAGAATA+AGG - chr7_1:71616189-71616208 Msa1035640:intron 25.0%
! TAAGGAAACATATCGTTTAT+TGG - chr7_1:71616207-71616226 Msa1035640:intron 25.0%
!!! CAACTCAATTTTGACTTAAA+AGG - chr7_1:71616272-71616291 Msa1035640:intron 25.0%
! ACATTCTTCTCTTTAACAAA+CGG + chr7_1:71616871-71616890 None:intergenic 25.0%
!! ATTAGAAATGTTTTCGTTTC+CGG + chr7_1:71616966-71616985 None:intergenic 25.0%
!! GCATGTTTAAAACAAAAAAC+AGG + chr7_1:71617063-71617082 None:intergenic 25.0%
! AAAACAAAATAAACCAGCAT+TGG + chr7_1:71617279-71617298 None:intergenic 25.0%
!!! CTGGTTTATTTTGTTTTAAG+AGG - chr7_1:71617282-71617301 Msa1035640:intron 25.0%
! GAAAAATGTATAATCGAGTT+AGG - chr7_1:71617437-71617456 Msa1035640:intron 25.0%
!! TAACTATGATAAACTTTTGC+AGG + chr7_1:71617661-71617680 None:intergenic 25.0%
! AAGACAATAAATCATGTACT+CGG + chr7_1:71617747-71617766 None:intergenic 25.0%
! ATAGATAGATTAAGAGACAT+TGG + chr7_1:71618251-71618270 None:intergenic 25.0%
! TTCTCTATGAATCTACAATT+AGG + chr7_1:71618309-71618328 None:intergenic 25.0%
! CAGACCAAAAAATAATTACA+TGG + chr7_1:71618640-71618659 None:intergenic 25.0%
!!! TTCTATAACTTTTTGAGGAA+AGG + chr7_1:71618799-71618818 None:intergenic 25.0%
! TCTTGTGTAATTCGTGTTTT+CGG - chr7_1:71614384-71614403 Msa1035640:CDS 30.0%
TTCTATTTGGTCTGAATTGT+GGG + chr7_1:71614447-71614466 None:intergenic 30.0%
! ACATCATGGAGTCTTTTTAT+TGG - chr7_1:71614511-71614530 Msa1035640:intron 30.0%
CACTCAATGTTGTAGATAAT+TGG - chr7_1:71614732-71614751 Msa1035640:intron 30.0%
TCATATTGCAAAAGCAGAAA+AGG - chr7_1:71614955-71614974 Msa1035640:CDS 30.0%
TTTGAACAAACCGCTATTAT+CGG + chr7_1:71615139-71615158 None:intergenic 30.0%
!! CACAAAGTATTGTCAAATAG+TGG + chr7_1:71615192-71615211 None:intergenic 30.0%
! TAATTCCCTATCATTGCTTT+TGG - chr7_1:71615358-71615377 Msa1035640:intron 30.0%
! ATTGGTACATTTTATCATCC+AGG - chr7_1:71615393-71615412 Msa1035640:intron 30.0%
! TTGGTACATTTTATCATCCA+GGG - chr7_1:71615394-71615413 Msa1035640:intron 30.0%
!!! TTGTAAGTTTTTTCGAACAC+CGG - chr7_1:71615540-71615559 Msa1035640:intron 30.0%
! TCTAATAACTAAGCTTTTGC+CGG + chr7_1:71615562-71615581 None:intergenic 30.0%
!! AGATTTTTCAAACACTCCAT+CGG - chr7_1:71615584-71615603 Msa1035640:intron 30.0%
TGCTTCTTAATACAGTAGTT+AGG - chr7_1:71615694-71615713 Msa1035640:intron 30.0%
AACAAAGGATCTTGAAAACA+CGG + chr7_1:71615962-71615981 None:intergenic 30.0%
CAGCTGATGTAAATGTTAAA+CGG - chr7_1:71616050-71616069 Msa1035640:intron 30.0%
ATAAAATTAGCACAGGAAAG+CGG + chr7_1:71616156-71616175 None:intergenic 30.0%
ACGATATGTTTCCTTATTCT+TGG + chr7_1:71616203-71616222 None:intergenic 30.0%
GTAAATAAGAAATGCAAGAC+AGG + chr7_1:71616455-71616474 None:intergenic 30.0%
GGTGTTCATGATAACATTAT+GGG + chr7_1:71617085-71617104 None:intergenic 30.0%
!!! GGCTTAGGGATTTTATTTTT+CGG + chr7_1:71617210-71617229 None:intergenic 30.0%
!! AAGTTACATTTTTCGGCTTA+GGG + chr7_1:71617224-71617243 None:intergenic 30.0%
! ACCCTAGAAGTTACATTTTT+CGG + chr7_1:71617231-71617250 None:intergenic 30.0%
TGATTAATTGCAACTTACGT+TGG + chr7_1:71617333-71617352 None:intergenic 30.0%
! GTTTTATGTATTCTCAACAG+AGG - chr7_1:71617581-71617600 Msa1035640:intron 30.0%
TCAACAGAGGAAGAATTTAA+CGG - chr7_1:71617594-71617613 Msa1035640:intron 30.0%
! AGTTTTTGAACATTGAGATC+AGG + chr7_1:71618033-71618052 None:intergenic 30.0%
TAGGAAGGAAAAAAAATCAC+TGG + chr7_1:71618147-71618166 None:intergenic 30.0%
!!! TACCTTTTCTAAAATCTGAC+AGG + chr7_1:71618383-71618402 None:intergenic 30.0%
!! TGTCAGATTTTAGAAAAGGT+AGG - chr7_1:71618382-71618401 Msa1035640:intron 30.0%
!! GATTTTAGAAAAGGTAGGTT+TGG - chr7_1:71618387-71618406 Msa1035640:intron 30.0%
GAACTTTGTATGAAGATTTG+AGG - chr7_1:71618566-71618585 Msa1035640:CDS 30.0%
CATCATCATCATCTTGCTTA+TGG - chr7_1:71614201-71614220 Msa1035640:three_prime_UTR 35.0%
ATTGGTGGAGATAGAGAATT+TGG + chr7_1:71614230-71614249 None:intergenic 35.0%
TGTGGAGAAATTGAAATTGG+TGG + chr7_1:71614245-71614264 None:intergenic 35.0%
!!! TCAATTTTGGGTTACCTGAA+TGG + chr7_1:71614345-71614364 None:intergenic 35.0%
CACGAATTACACAAGAATGA+AGG + chr7_1:71614380-71614399 None:intergenic 35.0%
CTTCTATTTGGTCTGAATTG+TGG + chr7_1:71614448-71614467 None:intergenic 35.0%
CTTACATCCATTGAACATCA+TGG - chr7_1:71614497-71614516 Msa1035640:intron 35.0%
AAAGACTCCATGATGTTCAA+TGG + chr7_1:71614507-71614526 None:intergenic 35.0%
ATTGGCAACAACACATTTGA+TGG - chr7_1:71614750-71614769 Msa1035640:intron 35.0%
TTGACACTGATCTTTATCAC+TGG - chr7_1:71614811-71614830 Msa1035640:intron 35.0%
TGATCTTTATCACTGGACAA+AGG - chr7_1:71614818-71614837 Msa1035640:intron 35.0%
TGTGCACTTTATGTGTGTAA+TGG - chr7_1:71614868-71614887 Msa1035640:CDS 35.0%
AAAAGCAGAAAAGGAACTCA+AGG - chr7_1:71614964-71614983 Msa1035640:CDS 35.0%
!! CAAGGAACAACTTAAGTTGA+TGG - chr7_1:71614982-71615001 Msa1035640:CDS 35.0%
! GTTGATGGATGTTGTTATAG+AGG - chr7_1:71614997-71615016 Msa1035640:CDS 35.0%
!!! TTTTGGTGTTAACTTACCTG+TGG + chr7_1:71615058-71615077 None:intergenic 35.0%
AACGTCGGTACATAGAATAA+AGG + chr7_1:71615101-71615120 None:intergenic 35.0%
CAATCCATTAAAGACAACGT+CGG + chr7_1:71615116-71615135 None:intergenic 35.0%
!! TAATGGATTGCCGATAATAG+CGG - chr7_1:71615126-71615145 Msa1035640:intron 35.0%
GTCAAATAGTGGCTATAGTA+GGG + chr7_1:71615181-71615200 None:intergenic 35.0%
TGTCAAATAGTGGCTATAGT+AGG + chr7_1:71615182-71615201 None:intergenic 35.0%
TTGTGCTAAATTGCGTATTG+TGG - chr7_1:71615207-71615226 Msa1035640:intron 35.0%
!!! TTTTGGTTCCGTTATCTGAT+TGG - chr7_1:71615375-71615394 Msa1035640:intron 35.0%
! TGGTACATTTTATCATCCAG+GGG - chr7_1:71615395-71615414 Msa1035640:intron 35.0%
! AGGTATTGTCGTAGTACAAA+AGG + chr7_1:71615720-71615739 None:intergenic 35.0%
ATAGATCCATCTACAAAAGC+AGG + chr7_1:71615768-71615787 None:intergenic 35.0%
! TGCTTTTGTAGATGGATCTA+TGG - chr7_1:71615767-71615786 Msa1035640:intron 35.0%
! TTTTACTAGGCATGGAACAA+AGG - chr7_1:71615870-71615889 Msa1035640:intron 35.0%
GGATCAGATATGTTGAACAA+AGG + chr7_1:71615977-71615996 None:intergenic 35.0%
TGATCCTATGCTTTATGTAC+AGG - chr7_1:71615991-71616010 Msa1035640:intron 35.0%
GATCCTATGCTTTATGTACA+GGG - chr7_1:71615992-71616011 Msa1035640:intron 35.0%
!! CTTTTCCATCTCTAGGAATA+AGG - chr7_1:71616299-71616318 Msa1035640:intron 35.0%
CATTTCCTTATTCCTAGAGA+TGG + chr7_1:71616307-71616326 None:intergenic 35.0%
TTGTACTATGGAAGTAGATG+TGG - chr7_1:71616630-71616649 Msa1035640:intron 35.0%
! GAGATGATTTTCCCACATTA+GGG + chr7_1:71616841-71616860 None:intergenic 35.0%
! AGAGATGATTTTCCCACATT+AGG + chr7_1:71616842-71616861 None:intergenic 35.0%
TTCGTTTCCGGAGATATTTA+AGG + chr7_1:71616954-71616973 None:intergenic 35.0%
GGGTGTTCATGATAACATTA+TGG + chr7_1:71617086-71617105 None:intergenic 35.0%
!!! GGGATTTTATTTTTCGGCTT+AGG + chr7_1:71617204-71617223 None:intergenic 35.0%
!! GAAGTTACATTTTTCGGCTT+AGG + chr7_1:71617225-71617244 None:intergenic 35.0%
AGCCGAAAAATGTAACTTCT+AGG - chr7_1:71617226-71617245 Msa1035640:intron 35.0%
GCCGAAAAATGTAACTTCTA+GGG - chr7_1:71617227-71617246 Msa1035640:intron 35.0%
! GTTTTTCTTGATCTCAACAG+AGG - chr7_1:71617249-71617268 Msa1035640:intron 35.0%
CATTTCCTGGAATGTTAACT+TGG + chr7_1:71617366-71617385 None:intergenic 35.0%
TGGAAAACAACAACATTTCC+TGG + chr7_1:71617379-71617398 None:intergenic 35.0%
! TTATTTGGATAGGGAAGCAT+AGG + chr7_1:71617524-71617543 None:intergenic 35.0%
GCTTCCCTATCCAAATAAAA+CGG - chr7_1:71617526-71617545 Msa1035640:intron 35.0%
CTTACAAAACTTCCAACAGT+AGG - chr7_1:71617945-71617964 Msa1035640:intron 35.0%
TGATGATACATACCTACTGT+TGG + chr7_1:71617960-71617979 None:intergenic 35.0%
!! TTCTAAAATCTGACAGGACA+CGG + chr7_1:71618377-71618396 None:intergenic 35.0%
!! GTCCTGTCAGATTTTAGAAA+AGG - chr7_1:71618378-71618397 Msa1035640:intron 35.0%
! TTAGAAAAGGTAGGTTTGGT+TGG - chr7_1:71618391-71618410 Msa1035640:intron 35.0%
AAATTACGCTAGAGAAATCC+AGG - chr7_1:71618485-71618504 Msa1035640:CDS 35.0%
ATGATGCATACAGAATCCTA+TGG + chr7_1:71618697-71618716 None:intergenic 35.0%
AGCACTAGCAGCAATAAACA+TGG - chr7_1:71614151-71614170 Msa1035640:three_prime_UTR 40.0%
!!! TTTTGGGTTACCTGAATGGT+GGG + chr7_1:71614341-71614360 None:intergenic 40.0%
!!! ATTTTGGGTTACCTGAATGG+TGG + chr7_1:71614342-71614361 None:intergenic 40.0%
TTGGTCTGAATTGTGGGTTT+GGG + chr7_1:71614441-71614460 None:intergenic 40.0%
TTTGGTCTGAATTGTGGGTT+TGG + chr7_1:71614442-71614461 None:intergenic 40.0%
CTGACAGTGCATCTTCTATT+TGG + chr7_1:71614460-71614479 None:intergenic 40.0%
! AACACATTTGATGGTTCCGA+AGG - chr7_1:71614759-71614778 Msa1035640:intron 40.0%
CACATACTAAATACCTGCAC+AGG + chr7_1:71614852-71614871 None:intergenic 40.0%
!! TTTGAGTGCTGATTACTCCT+TGG - chr7_1:71614911-71614930 Msa1035640:CDS 40.0%
! TGCTGATTACTCCTTGGTAT+TGG - chr7_1:71614917-71614936 Msa1035640:CDS 40.0%
!! TCTGCTTTTGCAATATGACC+AGG + chr7_1:71614953-71614972 None:intergenic 40.0%
! GTTGTTATAGAGGTACGAGA+CGG - chr7_1:71615007-71615026 Msa1035640:CDS 40.0%
! TTGTTATAGAGGTACGAGAC+GGG - chr7_1:71615008-71615027 Msa1035640:CDS 40.0%
! TGTACCGACGTTGTCTTTAA+TGG - chr7_1:71615109-71615128 Msa1035640:intron 40.0%
CTGTGAAATAGCAGCATTTG+TGG + chr7_1:71615280-71615299 None:intergenic 40.0%
CGGAACCAAAAGCAATGATA+GGG + chr7_1:71615366-71615385 None:intergenic 40.0%
ACGGAACCAAAAGCAATGAT+AGG + chr7_1:71615367-71615386 None:intergenic 40.0%
TTTATCATCCAGGGGATGTT+TGG - chr7_1:71615403-71615422 Msa1035640:intron 40.0%
TTATCATCCAGGGGATGTTT+GGG - chr7_1:71615404-71615423 Msa1035640:intron 40.0%
GGAAAATGACATAACACCGA+TGG + chr7_1:71615603-71615622 None:intergenic 40.0%
!! GTTACTCCTGCTTTTGTAGA+TGG - chr7_1:71615759-71615778 Msa1035640:intron 40.0%
TTGTAGATGGATCTATGGCT+TGG - chr7_1:71615772-71615791 Msa1035640:intron 40.0%
AACTGCAGATCGAAATGCTT+GGG - chr7_1:71615840-71615859 Msa1035640:intron 40.0%
!! CTTGGGCAGAGTATTTTACT+AGG - chr7_1:71615857-71615876 Msa1035640:intron 40.0%
!! GCAGAGTATTTTACTAGGCA+TGG - chr7_1:71615862-71615881 Msa1035640:intron 40.0%
ACAAAGGTTGTCTTCTCCAA+TGG - chr7_1:71615886-71615905 Msa1035640:intron 40.0%
CAAAGGTTGTCTTCTCCAAT+GGG - chr7_1:71615887-71615906 Msa1035640:intron 40.0%
GGAGGAGAAAAGATCTTGTT+TGG + chr7_1:71615933-71615952 None:intergenic 40.0%
CTGCTAATTCCTTTGCTAAC+CGG + chr7_1:71616033-71616052 None:intergenic 40.0%
AATGTTAAACGGAGAGCCAA+AGG - chr7_1:71616061-71616080 Msa1035640:intron 40.0%
AATTGCTAGAAGCAACCTAC+CGG + chr7_1:71616100-71616119 None:intergenic 40.0%
!! AGGACTACTTTTCCATCTCT+AGG - chr7_1:71616292-71616311 Msa1035640:intron 40.0%
AAACAATGTTAAGGAGCTGC+AGG + chr7_1:71616365-71616384 None:intergenic 40.0%
ACTATTGTATAGGTTCGAGC+TGG - chr7_1:71616803-71616822 Msa1035640:intron 40.0%
AATAGTTGGGTACCCTAATG+TGG - chr7_1:71616826-71616845 Msa1035640:intron 40.0%
ATAGTTGGGTACCCTAATGT+GGG - chr7_1:71616827-71616846 Msa1035640:intron 40.0%
CTCAAATCTCTTGTAACTCC+TGG + chr7_1:71616911-71616930 None:intergenic 40.0%
CAGGAGTTACAAGAGATTTG+AGG - chr7_1:71616909-71616928 Msa1035640:CDS 40.0%
TTAGTTGTGTGTGTGTGTGT+GGG + chr7_1:71617136-71617155 None:intergenic 40.0%
TTTAGTTGTGTGTGTGTGTG+TGG + chr7_1:71617137-71617156 None:intergenic 40.0%
! AATGGACTTCCAAGTCCTAA+TGG - chr7_1:71617172-71617191 Msa1035640:intron 40.0%
TTTGGCCAAGTTAACATTCC+AGG - chr7_1:71617358-71617377 Msa1035640:intron 40.0%
! CTAGCTGTTCATCAGCTTTT+CGG - chr7_1:71617492-71617511 Msa1035640:intron 40.0%
TCCCTATCCAAATAAAACGG+TGG - chr7_1:71617529-71617548 Msa1035640:intron 40.0%
!!! GCCACCGTTTTATTTGGATA+GGG + chr7_1:71617533-71617552 None:intergenic 40.0%
!!! TGCCACCGTTTTATTTGGAT+AGG + chr7_1:71617534-71617553 None:intergenic 40.0%
!! GAACTTGCCACCGTTTTATT+TGG + chr7_1:71617539-71617558 None:intergenic 40.0%
TGAGCTCAAGCAAGAAACAA+TGG - chr7_1:71617702-71617721 Msa1035640:intron 40.0%
! TATGAAAGGTGGGTTCGATT+TGG - chr7_1:71617777-71617796 Msa1035640:CDS 40.0%
! ATGAAAGGTGGGTTCGATTT+GGG - chr7_1:71617778-71617797 Msa1035640:CDS 40.0%
!! CAAGTTTTATAGCTGCTGAC+TGG + chr7_1:71617857-71617876 None:intergenic 40.0%
CTTGCCATATGTGATGACAT+TGG - chr7_1:71617873-71617892 Msa1035640:intron 40.0%
CTCTCCAATGTCATCACATA+TGG + chr7_1:71617880-71617899 None:intergenic 40.0%
TATGTGATGACATTGGAGAG+AGG - chr7_1:71617880-71617899 Msa1035640:intron 40.0%
TTTCGTGTAGACAGTGAATG+TGG - chr7_1:71618110-71618129 Msa1035640:intron 40.0%
CTTGCGCTTCATTTGTTCAA+TGG - chr7_1:71618330-71618349 Msa1035640:intron 40.0%
! TAGGTTTGGTTGGACTTCAT+TGG - chr7_1:71618401-71618420 Msa1035640:intron 40.0%
TGATATACTCCGACTGTGAA+TGG - chr7_1:71618537-71618556 Msa1035640:CDS 40.0%
TTCTTGACACCATTCACAGT+CGG + chr7_1:71618549-71618568 None:intergenic 40.0%
! GTATACAAGTGTTGTGCCAT+AGG - chr7_1:71618678-71618697 Msa1035640:five_prime_UTR 40.0%
!! ACTTTTTGAGGAAAGGCACA+AGG + chr7_1:71618792-71618811 None:intergenic 40.0%
! GAATGGTGGGAGATTGAGAT+TGG + chr7_1:71614328-71614347 None:intergenic 45.0%
ATCTCAATCTCCCACCATTC+AGG - chr7_1:71614328-71614347 Msa1035640:three_prime_UTR 45.0%
! ACATTTGATGGTTCCGAAGG+AGG - chr7_1:71614762-71614781 Msa1035640:intron 45.0%
! CATTTGATGGTTCCGAAGGA+GGG - chr7_1:71614763-71614782 Msa1035640:intron 45.0%
GTCAAGACCAGTCCAAAGAT+CGG + chr7_1:71614796-71614815 None:intergenic 45.0%
! AAAGGTTTTACGACCTGTGC+AGG - chr7_1:71614836-71614855 Msa1035640:intron 45.0%
! TACTCCTTGGTATTGGACAG+TGG - chr7_1:71614924-71614943 Msa1035640:CDS 45.0%
GAAACCACTGTCCAATACCA+AGG + chr7_1:71614931-71614950 None:intergenic 45.0%
! TGTGGATGACTTGTGGACAA+CGG + chr7_1:71615040-71615059 None:intergenic 45.0%
ACTTACCTGTGGATGACTTG+TGG + chr7_1:71615047-71615066 None:intergenic 45.0%
! TTGATAACCCAAACATCCCC+TGG + chr7_1:71615414-71615433 None:intergenic 45.0%
CAACTGCAGATCGAAATGCT+TGG - chr7_1:71615839-71615858 Msa1035640:intron 45.0%
ATCTTGAAAACACGGAGAGG+TGG + chr7_1:71615954-71615973 None:intergenic 45.0%
AGGATCTTGAAAACACGGAG+AGG + chr7_1:71615957-71615976 None:intergenic 45.0%
GTGCCCTGTACATAAAGCAT+AGG + chr7_1:71615998-71616017 None:intergenic 45.0%
TAGGTTCGAGCTGGAATAGT+TGG - chr7_1:71616812-71616831 Msa1035640:intron 45.0%
AGGTTCGAGCTGGAATAGTT+GGG - chr7_1:71616813-71616832 Msa1035640:intron 45.0%
TTGTTTCCTGACGCTAGTGT+TGG - chr7_1:71617017-71617036 Msa1035640:CDS 45.0%
TAGTTGTGTGTGTGTGTGTG+GGG + chr7_1:71617135-71617154 None:intergenic 45.0%
GCTCAAGCAAGAAACAATGG+TGG - chr7_1:71617705-71617724 Msa1035640:intron 45.0%
! TGGGAAAGATCTTGAGTTGC+TGG - chr7_1:71617797-71617816 Msa1035640:CDS 45.0%
!! ATTCGCATTGGAAGTATCCC+AGG + chr7_1:71617828-71617847 None:intergenic 45.0%
! TGGAGAGAGGTCTTATGATG+TGG - chr7_1:71617893-71617912 Msa1035640:intron 45.0%
TCATCATGACATGCATCCCT+TGG - chr7_1:71617974-71617993 Msa1035640:CDS 45.0%
TCTCAGCCTTTGTTCAATGC+AGG - chr7_1:71618059-71618078 Msa1035640:intron 45.0%
TCTCGACCTGCATTGAACAA+AGG + chr7_1:71618068-71618087 None:intergenic 45.0%
AACATCTGACTTCACCTAGG+TGG + chr7_1:71618432-71618451 None:intergenic 45.0%
GCAAACATCTGACTTCACCT+AGG + chr7_1:71618435-71618454 None:intergenic 45.0%
AGCTTCAGAGTCTTGCTTCT+TGG + chr7_1:71618457-71618476 None:intergenic 45.0%
!!! TTTAGTATTTTATTTATTTT+AGG - chr7_1:71617401-71617420 Msa1035640:intron 5.0%
CTGCGGGTGGGAATAAATTG+TGG + chr7_1:71614263-71614282 None:intergenic 50.0%
AAGTGGAGAACCTGCTACTG+CGG + chr7_1:71614280-71614299 None:intergenic 50.0%
!! TTGAGATTGGAGGGTTGGTG+TGG + chr7_1:71614315-71614334 None:intergenic 50.0%
GGAGATTGAGATTGGAGGGT+TGG + chr7_1:71614320-71614339 None:intergenic 50.0%
GGTGGGAGATTGAGATTGGA+GGG + chr7_1:71614324-71614343 None:intergenic 50.0%
TGGTGGGAGATTGAGATTGG+AGG + chr7_1:71614325-71614344 None:intergenic 50.0%
! GGTATTGGACAGTGGTTTCC+TGG - chr7_1:71614932-71614951 Msa1035640:CDS 50.0%
! TTATAGAGGTACGAGACGGG+CGG - chr7_1:71615011-71615030 Msa1035640:CDS 50.0%
GTTGTCCACAAGTCATCCAC+AGG - chr7_1:71615039-71615058 Msa1035640:intron 50.0%
AACCATTCCAAGCTGCCCAT+TGG + chr7_1:71615905-71615924 None:intergenic 50.0%
AATGGGCAGCTTGGAATGGT+TGG - chr7_1:71615904-71615923 Msa1035640:CDS 50.0%
TTGAAAACACGGAGAGGTGG+AGG + chr7_1:71615951-71615970 None:intergenic 50.0%
GTACAGGGCACATTGAAGCT+AGG - chr7_1:71616007-71616026 Msa1035640:intron 50.0%
CAAAGGACTACTTCCTCGTC+CGG - chr7_1:71616078-71616097 Msa1035640:intron 50.0%
AGGAGCTGCAGGAAAGTTGT+AGG + chr7_1:71616354-71616373 None:intergenic 50.0%
TCTCTTGTAACTCCTGGCCT+TGG + chr7_1:71616905-71616924 None:intergenic 50.0%
ACAGTACCAACACTAGCGTC+AGG + chr7_1:71617026-71617045 None:intergenic 50.0%
AGTTGTGTGTGTGTGTGTGG+GGG + chr7_1:71617134-71617153 None:intergenic 50.0%
AGGTTGCGTCCATTAGGACT+TGG + chr7_1:71617184-71617203 None:intergenic 50.0%
CAACAGAGGAAAGCCAATGC+TGG - chr7_1:71617263-71617282 Msa1035640:intron 50.0%
! TTGAGTTGCTGGACTCTCCT+GGG - chr7_1:71617808-71617827 Msa1035640:CDS 50.0%
!! GACTGGTCACTGATTCGCAT+TGG + chr7_1:71617840-71617859 None:intergenic 50.0%
CTTCATTGGAGAGACCACCT+AGG - chr7_1:71618415-71618434 Msa1035640:intron 50.0%
TGAGTTCTGTAGTCTGCACC+TGG + chr7_1:71618506-71618525 None:intergenic 50.0%
GTCGGAGTATATCAGCATGC+AGG + chr7_1:71618531-71618550 None:intergenic 50.0%
TTATTCCCACCCGCAGTAGC+AGG - chr7_1:71614267-71614286 Msa1035640:three_prime_UTR 55.0%
AGTGGAGAACCTGCTACTGC+GGG + chr7_1:71614279-71614298 None:intergenic 55.0%
ATGGTTCCGAAGGAGGGACT+GGG - chr7_1:71614769-71614788 Msa1035640:intron 55.0%
ACTGGGACCGATCTTTGGAC+TGG - chr7_1:71614786-71614805 Msa1035640:intron 55.0%
GTCTTCTCCAATGGGCAGCT+TGG - chr7_1:71615895-71615914 Msa1035640:CDS 55.0%
CTCCAATGGGCAGCTTGGAA+TGG - chr7_1:71615900-71615919 Msa1035640:CDS 55.0%
AGGGCACATTGAAGCTAGGC+CGG - chr7_1:71616011-71616030 Msa1035640:intron 55.0%
GAAGCTAGGCCGGTTAGCAA+AGG - chr7_1:71616021-71616040 Msa1035640:intron 55.0%
CGGACGAGGAAGTAGTCCTT+TGG + chr7_1:71616080-71616099 None:intergenic 55.0%
TAGAAGCAACCTACCGGACG+AGG + chr7_1:71616094-71616113 None:intergenic 55.0%
TTGTGTGTGTGTGTGTGGGG+GGG + chr7_1:71617132-71617151 None:intergenic 55.0%
GTTGTGTGTGTGTGTGTGGG+GGG + chr7_1:71617133-71617152 None:intergenic 55.0%
! CGGCTTAGGTTGCGTCCATT+AGG + chr7_1:71617190-71617209 None:intergenic 55.0%
! CTTGAGTTGCTGGACTCTCC+TGG - chr7_1:71617807-71617826 Msa1035640:CDS 55.0%
GAGAACCTGCTACTGCGGGT+GGG + chr7_1:71614275-71614294 None:intergenic 60.0%
TGTGGCAGCGAGAGGTGAAG+TGG + chr7_1:71614297-71614316 None:intergenic 60.0%
GATGGTTCCGAAGGAGGGAC+TGG - chr7_1:71614768-71614787 Msa1035640:intron 60.0%
ATCGGTCCCAGTCCCTCCTT+CGG + chr7_1:71614778-71614797 None:intergenic 60.0%
GAGGGACTGGGACCGATCTT+TGG - chr7_1:71614781-71614800 Msa1035640:intron 60.0%
GGACTACTTCCTCGTCCGGT+AGG - chr7_1:71616082-71616101 Msa1035640:intron 60.0%
GAATGTGCCCAGCAGCTCCA+AGG - chr7_1:71616885-71616904 Msa1035640:intron 60.0%
TGTGTGTGTGTGTGTGGGGG+GGG + chr7_1:71617131-71617150 None:intergenic 60.0%
GGAGAACCTGCTACTGCGGG+TGG + chr7_1:71614276-71614295 None:intergenic 65.0%
!! AGGGTTGGTGTGGCAGCGAG+AGG + chr7_1:71614305-71614324 None:intergenic 65.0%
!! CTCCTGGCCTTGGAGCTGCT+GGG + chr7_1:71616895-71616914 None:intergenic 65.0%
!! ACTCCTGGCCTTGGAGCTGC+TGG + chr7_1:71616896-71616915 None:intergenic 65.0%
TGTGTGTGTGTGTGGGGGGG+GGG + chr7_1:71617129-71617148 None:intergenic 65.0%
GTGTGTGTGTGTGTGGGGGG+GGG + chr7_1:71617130-71617149 None:intergenic 65.0%
TGCCCAGCAGCTCCAAGGCC+AGG - chr7_1:71616890-71616909 Msa1035640:intron 70.0%
TGTGTGTGTGTGGGGGGGGG+GGG + chr7_1:71617127-71617146 None:intergenic 70.0%
GTGTGTGTGTGTGGGGGGGG+GGG + chr7_1:71617128-71617147 None:intergenic 70.0%
TGTGTGTGTGGGGGGGGGGG+GGG + chr7_1:71617125-71617144 None:intergenic 75.0%
GTGTGTGTGTGGGGGGGGGG+GGG + chr7_1:71617126-71617145 None:intergenic 75.0%
! GTGTGTGTGGGGGGGGGGGG+GGG + chr7_1:71617124-71617143 None:intergenic 80.0%
! TGTGGGGGGGGGGGGGGGTG+GGG + chr7_1:71617119-71617138 None:intergenic 85.0%
! GTGTGGGGGGGGGGGGGGGT+GGG + chr7_1:71617120-71617139 None:intergenic 85.0%
! TGTGTGGGGGGGGGGGGGGG+TGG + chr7_1:71617121-71617140 None:intergenic 85.0%
! GGGGGTGGGGGGGTGGGGGG+GGG + chr7_1:71617106-71617125 None:intergenic 90.0%
! GGGGGGTGGGGGGGTGGGGG+GGG + chr7_1:71617107-71617126 None:intergenic 90.0%
! GGGGGGGTGGGGGGGTGGGG+GGG + chr7_1:71617108-71617127 None:intergenic 90.0%
! GGGGGGGGTGGGGGGGTGGG+GGG + chr7_1:71617109-71617128 None:intergenic 90.0%
! GGGGGGGGGTGGGGGGGTGG+GGG + chr7_1:71617110-71617129 None:intergenic 90.0%
! GGGGGGGGGGTGGGGGGGTG+GGG + chr7_1:71617111-71617130 None:intergenic 90.0%
! GGGGGGGGGGGTGGGGGGGT+GGG + chr7_1:71617112-71617131 None:intergenic 90.0%
! TGGGGGGGGGGGGGGGTGGG+GGG + chr7_1:71617117-71617136 None:intergenic 90.0%
! GTGGGGGGGGGGGGGGGTGG+GGG + chr7_1:71617118-71617137 None:intergenic 90.0%
! GGGGGGGGGGGGTGGGGGGG+TGG + chr7_1:71617113-71617132 None:intergenic 95.0%
! GGGGGGGGGGGGGGGTGGGG+GGG + chr7_1:71617116-71617135 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 71614003 71618821 71614003 ID=Msa1035640;Name=Msa1035640
chr7_1 mRNA 71614003 71618821 71614003 ID=Msa1035640-mRNA-1;Parent=Msa1035640;Name=Msa1035640-mRNA-1;_AED=0.36;_eAED=0.36;_QI=167|1|1|1|0.88|0.8|10|360|372
chr7_1 exon 71614003 71614114 71614003 ID=Msa1035640-mRNA-1:exon:17350;Parent=Msa1035640-mRNA-1
chr7_1 exon 71614136 71614507 71614136 ID=Msa1035640-mRNA-1:exon:17349;Parent=Msa1035640-mRNA-1
chr7_1 exon 71614686 71614743 71614686 ID=Msa1035640-mRNA-1:exon:17348;Parent=Msa1035640-mRNA-1
chr7_1 exon 71614858 71615039 71614858 ID=Msa1035640-mRNA-1:exon:17347;Parent=Msa1035640-mRNA-1
chr7_1 exon 71615894 71616009 71615894 ID=Msa1035640-mRNA-1:exon:17346;Parent=Msa1035640-mRNA-1
chr7_1 exon 71616725 71616811 71616725 ID=Msa1035640-mRNA-1:exon:17345;Parent=Msa1035640-mRNA-1
chr7_1 exon 71616903 71617046 71616903 ID=Msa1035640-mRNA-1:exon:17344;Parent=Msa1035640-mRNA-1
chr7_1 exon 71617764 71617880 71617764 ID=Msa1035640-mRNA-1:exon:17343;Parent=Msa1035640-mRNA-1
chr7_1 exon 71617967 71618077 71617967 ID=Msa1035640-mRNA-1:exon:17342;Parent=Msa1035640-mRNA-1
chr7_1 exon 71618475 71618821 71618475 ID=Msa1035640-mRNA-1:exon:17341;Parent=Msa1035640-mRNA-1
chr7_1 five_prime_UTR 71618655 71618821 71618655 ID=Msa1035640-mRNA-1:five_prime_utr;Parent=Msa1035640-mRNA-1
chr7_1 CDS 71618475 71618654 71618475 ID=Msa1035640-mRNA-1:cds;Parent=Msa1035640-mRNA-1
chr7_1 CDS 71617967 71618077 71617967 ID=Msa1035640-mRNA-1:cds;Parent=Msa1035640-mRNA-1
chr7_1 CDS 71617764 71617880 71617764 ID=Msa1035640-mRNA-1:cds;Parent=Msa1035640-mRNA-1
chr7_1 CDS 71616903 71617046 71616903 ID=Msa1035640-mRNA-1:cds;Parent=Msa1035640-mRNA-1
chr7_1 CDS 71616725 71616811 71616725 ID=Msa1035640-mRNA-1:cds;Parent=Msa1035640-mRNA-1
chr7_1 CDS 71615894 71616009 71615894 ID=Msa1035640-mRNA-1:cds;Parent=Msa1035640-mRNA-1
chr7_1 CDS 71614858 71615039 71614858 ID=Msa1035640-mRNA-1:cds;Parent=Msa1035640-mRNA-1
chr7_1 CDS 71614686 71614743 71614686 ID=Msa1035640-mRNA-1:cds;Parent=Msa1035640-mRNA-1
chr7_1 CDS 71614384 71614507 71614384 ID=Msa1035640-mRNA-1:cds;Parent=Msa1035640-mRNA-1
chr7_1 three_prime_UTR 71614136 71614383 71614136 ID=Msa1035640-mRNA-1:three_prime_utr;Parent=Msa1035640-mRNA-1
chr7_1 three_prime_UTR 71614003 71614114 71614003 ID=Msa1035640-mRNA-1:three_prime_utr;Parent=Msa1035640-mRNA-1
Gene Sequence

>Msa1035640

ATGGTGATGAGTGTTCAATTTCAACTATCATCATCATCATCATCTTGCTTATGGCTTCCAAATTCTCTATCTCCACCAATTTCAATTTCTCCACAATTTATTCCCACCCGCAGTAGCAGGTTCTCCACTTCACCTCTCGCTGCCACACCAACCCTCCAATCTCAATCTCCCACCATTCAGATAATTGGCAACAACACATTTGATGGTTCCGAAGGAGGGACTGGGACCGATCTTTGGACTGGTCTTGACACTGATCTTTATCACTGGACAAAGGTTTTACGACCTGTGCAGTGGTTTCCTGGTCATATTGCAAAAGCAGAAAAGGAACTCAAGGAACAACTTAAGTTGATGGATGTTGTTATAGAGGTACGAGACGGGCGGATTCCGTTGTCCACAAGTCATCCACAGATGGATCTATGGCTTGGTAATAAAAAGAGAATTTTGGTTTTAAATAGAGAAGACATGATATCAACTGCAGATCGAAATGCTTGGGCAGAGTATTTTACTAGGCATGGAACAAAGGTTGTCTTCTCCAATGGGCAGCTTGGAATGGGCACATTGAAGCTAGGCCGGTTAGCAAAGGAATTAGCAGCTGATGTAAATGTTAAACGGAGAGCCAAAGGACTACTTCCTCGTCCGGTTCGAGCTGGAATAGTTGGGTACCCTAATGTGGGAAAATCATCTCTGATCAACCGTTTGTTAAAGAGAAGAATGTGCCCAGCAGCTCCAAGGCCAGGAGTTACAAGAGATTTGAGGTGGGTTCGATTTGGGAAAGATCTTGAGTTGCTGGACTCTCCTGGGATACTTCCAATGCGAATCAGTGACCAGTCAGCAGCTATAAAACTTGCCATATGTGATGACATTGGAGAGAGGTCTTATGATGTGGCTGATGTTGCTGCAATTCTTGTTCAGATGCTTACAAAACTTCCAACAGTAGGTCGAGATGTGCTCTGTAAACGATACAAGTTTCGTGTAGACAGTGAATGTGGTAAAATATTCATAGAGAAACTTGCGCTTCATTTGTTCAATGGAGATGTTCATCAAGCAGCATACCGTGTCCTGTCAGATTTTAGAAAAGGTAGGTTTGGTTGGACTTCATTGGAGAGACCACCTAGGTGA

Protein sequence

>Msa1035640

MVMSVQFQLSSSSSSCLWLPNSLSPPISISPQFIPTRSSRFSTSPLAATPTLQSQSPTIQIIGNNTFDGSEGGTGTDLWTGLDTDLYHWTKVLRPVQWFPGHIAKAEKELKEQLKLMDVVIEVRDGRIPLSTSHPQMDLWLGNKKRILVLNREDMISTADRNAWAEYFTRHGTKVVFSNGQLGMGTLKLGRLAKELAADVNVKRRAKGLLPRPVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRDLRWVRFGKDLELLDSPGILPMRISDQSAAIKLAICDDIGERSYDVADVAAILVQMLTKLPTVGRDVLCKRYKFRVDSECGKIFIEKLALHLFNGDVHQAAYRVLSDFRKGRFGWTSLERPPR*