Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080730 | XP_003591227.1 | 98.361 | 183 | 3 | 0 | 1 | 183 | 1 | 183 | 5.46e-127 | 364 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080730 | sp|Q8LEK2|TVP23_ARATH | 82.796 | 186 | 29 | 1 | 1 | 183 | 1 | 186 | 4.10e-111 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080730 | G7I9I7 | 98.361 | 183 | 3 | 0 | 1 | 183 | 1 | 183 | 2.61e-127 | 364 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010490 | Msa0080730 | 0.819916 | 9.032127e-53 | -8.615850e-47 |
| Msa0020390 | Msa0080730 | 0.807966 | 3.903223e-50 | -8.615850e-47 |
| Msa0029260 | Msa0080730 | 0.815793 | 7.705479e-52 | -8.615850e-47 |
| Msa0033880 | Msa0080730 | 0.827589 | 1.439100e-54 | -8.615850e-47 |
| Msa0036540 | Msa0080730 | 0.810069 | 1.384553e-50 | -8.615850e-47 |
| Msa0071250 | Msa0080730 | 0.815784 | 7.740433e-52 | -8.615850e-47 |
| Msa0072420 | Msa0080730 | 0.800212 | 1.602011e-48 | -8.615850e-47 |
| Msa0080730 | Msa0084400 | 0.826116 | 3.237120e-54 | -8.615850e-47 |
| Msa0080730 | Msa0093010 | 0.836771 | 7.698936e-57 | -8.615850e-47 |
| Msa0080730 | Msa0093850 | 0.810736 | 9.936278e-51 | -8.615850e-47 |
| Msa0080730 | Msa0106620 | 0.820503 | 6.625860e-53 | -8.615850e-47 |
| Msa0080730 | Msa0106710 | 0.825951 | 3.543005e-54 | -8.615850e-47 |
| Msa0080730 | Msa0116380 | 0.849341 | 3.440684e-60 | -8.615850e-47 |
| Msa0080730 | Msa0119900 | 0.874714 | 5.440972e-68 | -8.615850e-47 |
| Msa0080730 | Msa0123510 | 0.801217 | 9.990843e-49 | -8.615850e-47 |
| Msa0080730 | Msa0127850 | 0.828975 | 6.668436e-55 | -8.615850e-47 |
| Msa0080730 | Msa0138360 | 0.814243 | 1.701607e-51 | -8.615850e-47 |
| Msa0080730 | Msa0139670 | 0.800239 | 1.582283e-48 | -8.615850e-47 |
| Msa0080730 | Msa0142410 | 0.807102 | 5.956303e-50 | -8.615850e-47 |
| Msa0080730 | Msa0147980 | 0.819323 | 1.233428e-52 | -8.615850e-47 |
| Msa0080730 | Msa0168090 | 0.802944 | 4.410968e-49 | -8.615850e-47 |
| Msa0080730 | Msa0169300 | 0.814768 | 1.302181e-51 | -8.615850e-47 |
| Msa0080730 | Msa0169610 | 0.822301 | 2.549246e-53 | -8.615850e-47 |
| Msa0080730 | Msa0174000 | 0.818622 | 1.780766e-52 | -8.615850e-47 |
| Msa0080730 | Msa0183850 | 0.805600 | 1.234239e-49 | -8.615850e-47 |
| Msa0080730 | Msa0188350 | 0.824533 | 7.667709e-54 | -8.615850e-47 |
| Msa0080730 | Msa0199420 | 0.834483 | 2.920279e-56 | -8.615850e-47 |
| Msa0080730 | Msa0202110 | 0.822424 | 2.386564e-53 | -8.615850e-47 |
| Msa0080730 | Msa0202490 | 0.852565 | 4.245864e-61 | -8.615850e-47 |
| Msa0080730 | Msa0204960 | 0.828063 | 1.107228e-54 | -8.615850e-47 |
| Msa0080730 | Msa0209080 | 0.819302 | 1.247360e-52 | -8.615850e-47 |
| Msa0080730 | Msa0209140 | 0.813249 | 2.816238e-51 | -8.615850e-47 |
| Msa0080730 | Msa0209500 | 0.832470 | 9.284223e-56 | -8.615850e-47 |
| Msa0080730 | Msa0218830 | 0.825068 | 5.734628e-54 | -8.615850e-47 |
| Msa0080730 | Msa0231100 | 0.801642 | 8.178040e-49 | -8.615850e-47 |
| Msa0080730 | Msa0231790 | 0.809698 | 1.663859e-50 | -8.615850e-47 |
| Msa0080730 | Msa0236620 | 0.853374 | 2.493472e-61 | -8.615850e-47 |
| Msa0080730 | Msa0240900 | 0.804806 | 1.810447e-49 | -8.615850e-47 |
| Msa0080730 | Msa0241830 | 0.857111 | 2.039100e-62 | -8.615850e-47 |
| Msa0080730 | Msa0244970 | 0.813204 | 2.881672e-51 | -8.615850e-47 |
| Msa0080730 | Msa0244980 | 0.848502 | 5.882491e-60 | -8.615850e-47 |
| Msa0080730 | Msa0245580 | 0.867126 | 1.721786e-65 | -8.615850e-47 |
| Msa0080730 | Msa0249580 | 0.825731 | 3.994660e-54 | -8.615850e-47 |
| Msa0080730 | Msa0257490 | 0.846981 | 1.543295e-59 | -8.615850e-47 |
| Msa0080730 | Msa0269470 | 0.839017 | 2.036891e-57 | -8.615850e-47 |
| Msa0080730 | Msa0279850 | 0.836611 | 8.456771e-57 | -8.615850e-47 |
| Msa0080730 | Msa0281530 | 0.835881 | 1.295801e-56 | -8.615850e-47 |
| Msa0080730 | Msa0283420 | 0.836417 | 9.475188e-57 | -8.615850e-47 |
| Msa0080730 | Msa0284180 | 0.865374 | 6.185081e-65 | -8.615850e-47 |
| Msa0080730 | Msa0296250 | 0.839528 | 1.501882e-57 | -8.615850e-47 |
| Msa0080730 | Msa0296790 | 0.846308 | 2.355959e-59 | -8.615850e-47 |
| Msa0080730 | Msa0300350 | 0.810503 | 1.115791e-50 | -8.615850e-47 |
| Msa0080730 | Msa0305780 | 0.806080 | 9.785025e-50 | -8.615850e-47 |
| Msa0080730 | Msa0317970 | 0.836026 | 1.190693e-56 | -8.615850e-47 |
| Msa0080730 | Msa0320590 | 0.855050 | 8.179380e-62 | -8.615850e-47 |
| Msa0080730 | Msa0321690 | 0.837165 | 6.105936e-57 | -8.615850e-47 |
| Msa0080730 | Msa0322240 | 0.808487 | 3.023429e-50 | -8.615850e-47 |
| Msa0080730 | Msa0322900 | 0.854346 | 1.308327e-61 | -8.615850e-47 |
| Msa0080730 | Msa0341690 | 0.818648 | 1.756330e-52 | -8.615850e-47 |
| Msa0080730 | Msa0357900 | 0.823156 | 1.612051e-53 | -8.615850e-47 |
| Msa0080730 | Msa0382370 | 0.804114 | 2.523062e-49 | -8.615850e-47 |
| Msa0080730 | Msa0384670 | 0.809477 | 1.856125e-50 | -8.615850e-47 |
| Msa0080730 | Msa0385500 | 0.850084 | 2.133632e-60 | -8.615850e-47 |
| Msa0080730 | Msa0403770 | 0.818582 | 1.818649e-52 | -8.615850e-47 |
| Msa0080730 | Msa0419720 | 0.808925 | 2.437537e-50 | -8.615850e-47 |
| Msa0080730 | Msa0423750 | 0.837538 | 4.901108e-57 | -8.615850e-47 |
| Msa0080730 | Msa0426580 | 0.803911 | 2.780289e-49 | -8.615850e-47 |
| Msa0080730 | Msa0427860 | -0.806521 | 7.900970e-50 | -8.615850e-47 |
| Msa0080730 | Msa0434570 | 0.824889 | 6.320128e-54 | -8.615850e-47 |
| Msa0080730 | Msa0434770 | 0.820088 | 8.251129e-53 | -8.615850e-47 |
| Msa0080730 | Msa0443390 | 0.837051 | 6.527229e-57 | -8.615850e-47 |
| Msa0080730 | Msa0450400 | -0.829893 | 3.989966e-55 | -8.615850e-47 |
| Msa0080730 | Msa0463850 | 0.803945 | 2.735907e-49 | -8.615850e-47 |
| Msa0080730 | Msa0474090 | -0.802109 | 6.556609e-49 | -8.615850e-47 |
| Msa0080730 | Msa0478580 | 0.810268 | 1.254181e-50 | -8.615850e-47 |
| Msa0080730 | Msa0482940 | 0.816772 | 4.655382e-52 | -8.615850e-47 |
| Msa0080730 | Msa0485240 | 0.820079 | 8.289562e-53 | -8.615850e-47 |
| Msa0080730 | Msa0485710 | 0.810860 | 9.343699e-51 | -8.615850e-47 |
| Msa0080730 | Msa0511770 | 0.859300 | 4.551383e-63 | -8.615850e-47 |
| Msa0080730 | Msa0518030 | 0.809351 | 1.975306e-50 | -8.615850e-47 |
| Msa0080730 | Msa0531250 | 0.812631 | 3.847798e-51 | -8.615850e-47 |
| Msa0080730 | Msa0542560 | 0.800540 | 1.373984e-48 | -8.615850e-47 |
| Msa0080730 | Msa0547160 | 0.832276 | 1.037008e-55 | -8.615850e-47 |
| Msa0080730 | Msa0547990 | 0.824633 | 7.261063e-54 | -8.615850e-47 |
| Msa0080730 | Msa0581110 | 0.841923 | 3.539236e-58 | -8.615850e-47 |
| Msa0080730 | Msa0581280 | 0.807800 | 4.234764e-50 | -8.615850e-47 |
| Msa0080730 | Msa0593700 | 0.803879 | 2.824192e-49 | -8.615850e-47 |
| Msa0080730 | Msa0603570 | 0.805345 | 1.396406e-49 | -8.615850e-47 |
| Msa0080730 | Msa0607690 | 0.805666 | 1.195786e-49 | -8.615850e-47 |
| Msa0080730 | Msa0615580 | 0.832048 | 1.180760e-55 | -8.615850e-47 |
| Msa0080730 | Msa0617170 | 0.816406 | 5.622879e-52 | -8.615850e-47 |
| Msa0080730 | Msa0619860 | 0.810187 | 1.305558e-50 | -8.615850e-47 |
| Msa0080730 | Msa0628420 | 0.811289 | 7.541253e-51 | -8.615850e-47 |
| Msa0080730 | Msa0642970 | 0.810692 | 1.015679e-50 | -8.615850e-47 |
| Msa0080730 | Msa0662630 | 0.816022 | 6.852078e-52 | -8.615850e-47 |
| Msa0080730 | Msa0662890 | 0.832489 | 9.181720e-56 | -8.615850e-47 |
| Msa0080730 | Msa0666230 | 0.813297 | 2.749043e-51 | -8.615850e-47 |
| Msa0080730 | Msa0672100 | 0.819430 | 1.166041e-52 | -8.615850e-47 |
| Msa0080730 | Msa0689320 | 0.806973 | 6.341060e-50 | -8.615850e-47 |
| Msa0080730 | Msa0689440 | 0.803241 | 3.828758e-49 | -8.615850e-47 |
| Msa0080730 | Msa0693210 | 0.803758 | 2.992306e-49 | -8.615850e-47 |
| Msa0080730 | Msa0693330 | 0.815175 | 1.057749e-51 | -8.615850e-47 |
| Msa0080730 | Msa0780930 | 0.816967 | 4.208646e-52 | -8.615850e-47 |
| Msa0080730 | Msa0800370 | 0.826789 | 2.236577e-54 | -8.615850e-47 |
| Msa0080730 | Msa0808800 | 0.822145 | 2.771048e-53 | -8.615850e-47 |
| Msa0080730 | Msa0826150 | 0.806279 | 8.885096e-50 | -8.615850e-47 |
| Msa0080730 | Msa0833190 | -0.866416 | 2.898067e-65 | -8.615850e-47 |
| Msa0080730 | Msa0859320 | 0.803802 | 2.929899e-49 | -8.615850e-47 |
| Msa0080730 | Msa0892640 | 0.810798 | 9.635489e-51 | -8.615850e-47 |
| Msa0080730 | Msa0903780 | 0.803660 | 3.134826e-49 | -8.615850e-47 |
| Msa0080730 | Msa0913240 | 0.834483 | 2.919517e-56 | -8.615850e-47 |
| Msa0080730 | Msa0944200 | 0.823559 | 1.297794e-53 | -8.615850e-47 |
| Msa0080730 | Msa0944610 | 0.819965 | 8.804558e-53 | -8.615850e-47 |
| Msa0080730 | Msa0958000 | 0.833267 | 5.883676e-56 | -8.615850e-47 |
| Msa0080730 | Msa0974950 | 0.831606 | 1.517937e-55 | -8.615850e-47 |
| Msa0080730 | Msa0980540 | 0.800523 | 1.384582e-48 | -8.615850e-47 |
| Msa0080730 | Msa0992550 | 0.818225 | 2.190280e-52 | -8.615850e-47 |
| Msa0080730 | Msa1039810 | 0.800462 | 1.425093e-48 | -8.615850e-47 |
| Msa0080730 | Msa1039900 | 0.830629 | 2.636372e-55 | -8.615850e-47 |
| Msa0080730 | Msa1059300 | 0.804234 | 2.382465e-49 | -8.615850e-47 |
| Msa0080730 | Msa1089450 | 0.835436 | 1.680365e-56 | -8.615850e-47 |
| Msa0080730 | Msa1123350 | 0.820825 | 5.590552e-53 | -8.615850e-47 |
| Msa0080730 | Msa1123780 | 0.817985 | 2.482557e-52 | -8.615850e-47 |
| Msa0080730 | Msa1126830 | 0.843225 | 1.596792e-58 | -8.615850e-47 |
| Msa0080730 | Msa1127590 | 0.815604 | 8.489800e-52 | -8.615850e-47 |
| Msa0080730 | Msa1128280 | 0.808099 | 3.657590e-50 | -8.615850e-47 |
| Msa0080730 | Msa1165270 | 0.819317 | 1.237510e-52 | -8.615850e-47 |
| Msa0080730 | Msa1165780 | 0.868369 | 6.872162e-66 | -8.615850e-47 |
| Msa0080730 | Msa1169920 | 0.821055 | 4.947778e-53 | -8.615850e-47 |
| Msa0080730 | Msa1175350 | 0.819741 | 9.901894e-53 | -8.615850e-47 |
| Msa0080730 | Msa1178580 | 0.820797 | 5.673179e-53 | -8.615850e-47 |
| Msa0080730 | Msa1202580 | 0.825446 | 4.666426e-54 | -8.615850e-47 |
| Msa0080730 | Msa1206650 | 0.834148 | 3.542912e-56 | -8.615850e-47 |
| Msa0080730 | Msa1208020 | 0.818079 | 2.363915e-52 | -8.615850e-47 |
| Msa0080730 | Msa1216260 | 0.804025 | 2.632852e-49 | -8.615850e-47 |
| Msa0080730 | Msa1233850 | 0.835325 | 1.792289e-56 | -8.615850e-47 |
| Msa0080730 | Msa1254560 | 0.829729 | 4.373645e-55 | -8.615850e-47 |
| Msa0080730 | Msa1262890 | 0.847034 | 1.492662e-59 | -8.615850e-47 |
| Msa0080730 | Msa1264210 | 0.809530 | 1.808214e-50 | -8.615850e-47 |
| Msa0080730 | Msa1276150 | 0.818390 | 2.009752e-52 | -8.615850e-47 |
| Msa0080730 | Msa1276970 | 0.869365 | 3.269437e-66 | -8.615850e-47 |
| Msa0080730 | Msa1296830 | 0.825613 | 4.260542e-54 | -8.615850e-47 |
| Msa0080730 | Msa1307180 | 0.813807 | 2.123171e-51 | -8.615850e-47 |
| Msa0080730 | Msa1316360 | 0.824276 | 8.813752e-54 | -8.615850e-47 |
| Msa0080730 | Msa1331250 | 0.814526 | 1.473226e-51 | -8.615850e-47 |
| Msa0080730 | Msa1336560 | 0.825001 | 5.946607e-54 | -8.615850e-47 |
| Msa0080730 | Msa1341060 | 0.824899 | 6.285626e-54 | -8.615850e-47 |
| Msa0080730 | Msa1342630 | 0.803424 | 3.510044e-49 | -8.615850e-47 |
| Msa0080730 | Msa1351540 | 0.844680 | 6.508592e-59 | -8.615850e-47 |
| Msa0080730 | Msa1352890 | 0.822551 | 2.229412e-53 | -8.615850e-47 |
| Msa0080730 | Msa1369690 | 0.812724 | 3.671298e-51 | -8.615850e-47 |
| Msa0080730 | Msa1370590 | 0.818990 | 1.469200e-52 | -8.615850e-47 |
| Msa0080730 | Msa1384100 | 0.820439 | 6.854599e-53 | -8.615850e-47 |
| Msa0080730 | Msa1385730 | 0.820527 | 6.542586e-53 | -8.615850e-47 |
| Msa0080730 | Msa1391480 | 0.803685 | 3.098627e-49 | -8.615850e-47 |
| Msa0080730 | Msa1411950 | 0.822885 | 1.864304e-53 | -8.615850e-47 |
| Msa0080730 | Msa1418240 | 0.807005 | 6.244544e-50 | -8.615850e-47 |
| Msa0080730 | Msa1432480 | 0.823952 | 1.049919e-53 | -8.615850e-47 |
| Msa0080730 | Msa1444120 | 0.810862 | 9.331976e-51 | -8.615850e-47 |
| Msa0080730 | Msa1454450 | 0.812642 | 3.826087e-51 | -8.615850e-47 |
| Msa0080730 | Msa1454680 | 0.808969 | 2.384537e-50 | -8.615850e-47 |
| Msa0080730 | Msa1459960 | 0.817993 | 2.471941e-52 | -8.615850e-47 |
| Msa0080730 | Msa1465260 | 0.806387 | 8.430153e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080730 | MtrunA17_Chr1g0193001 | 98.361 | 183 | 3 | 0 | 1 | 183 | 1 | 183 | 5.02e-131 | 364 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080730 | AT1G09330.1 | 82.796 | 186 | 29 | 1 | 1 | 183 | 1 | 186 | 4.16e-112 | 317 |
| Msa0080730 | AT1G09330.2 | 86.087 | 115 | 13 | 1 | 1 | 112 | 1 | 115 | 8.30e-69 | 206 |
Find 51 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAGCCATTTCTCATAAA+AGG | 0.194752 | 1_2:+59093407 | None:intergenic |
| TCGCAAATCTAACAAACTTT+TGG | 0.230443 | 1_2:-59097182 | Msa0080730:five_prime_UTR |
| TTTGGTAAAACCAACGATAT+TGG | 0.281162 | 1_2:+59094604 | None:intergenic |
| AACGTTGAATTTACCTGGTT+GGG | 0.320527 | 1_2:+59097039 | None:intergenic |
| GCTGATTATCTCCTTGTTGT+AGG | 0.355434 | 1_2:-59094650 | Msa0080730:CDS |
| ATGATCTTGGTGAGAGTGTT+TGG | 0.360765 | 1_2:-59096586 | Msa0080730:CDS |
| GTTAGATTTGCGAGTAAGAT+TGG | 0.376947 | 1_2:+59097192 | None:intergenic |
| ATTCTCCCTCATAAGGCTTC+AGG | 0.382513 | 1_2:-59094672 | Msa0080730:CDS |
| AGTAACTATGCAAGTTTGAT+AGG | 0.391251 | 1_2:+59093455 | None:intergenic |
| TTCTCTTACCGCAAGGTAAA+GGG | 0.399828 | 1_2:+59096068 | None:intergenic |
| AATCAGCCTGAAGCCTTATG+AGG | 0.430875 | 1_2:+59094666 | None:intergenic |
| TGGCAATATTCTCCCTCATA+AGG | 0.431645 | 1_2:-59094679 | Msa0080730:CDS |
| ATTCTCTTACCGCAAGGTAA+AGG | 0.432253 | 1_2:+59096067 | None:intergenic |
| ATGTTGCTTGAACGGACAAA+AGG | 0.436032 | 1_2:+59097224 | None:intergenic |
| TGCAAGTTTGATAGGTAGTC+AGG | 0.436157 | 1_2:+59093463 | None:intergenic |
| TCTCAGCAAGGTGTAAAATC+TGG | 0.437505 | 1_2:-59097128 | Msa0080730:five_prime_UTR |
| TACTTTCTATGTTGCTTGAA+CGG | 0.438991 | 1_2:+59097216 | None:intergenic |
| AACACTAAATGCTGACTGTA+AGG | 0.448188 | 1_2:+59093594 | None:intergenic |
| TTTCACTGCAGTCATTGGCT+AGG | 0.465921 | 1_2:-59096125 | Msa0080730:intron |
| AAACGTTGAATTTACCTGGT+TGG | 0.477789 | 1_2:+59097038 | None:intergenic |
| CTCAGCATTGCCAATATCGT+TGG | 0.478560 | 1_2:-59094614 | Msa0080730:CDS |
| CCTCTCAGACAATTGCCTCT+CGG | 0.479391 | 1_2:-59093627 | Msa0080730:CDS |
| GGATGAACAAGAAAGATTCA+TGG | 0.490476 | 1_2:-59096104 | Msa0080730:CDS |
| ACATGAAAGAAACAAGTCCT+TGG | 0.501598 | 1_2:+59096887 | None:intergenic |
| TGGAATGAAATTGATGATCT+TGG | 0.506140 | 1_2:-59096599 | Msa0080730:CDS |
| CTCTCTCCGAAGCTCACACA+TGG | 0.507496 | 1_2:-59097064 | Msa0080730:exon |
| AAAGAAACAAGTCCTTGGAT+TGG | 0.508177 | 1_2:+59096892 | None:intergenic |
| TGGGATCCATGTGTGAGCTT+CGG | 0.532337 | 1_2:+59097058 | None:intergenic |
| GAAATATTGAGATGCGGTGG+AGG | 0.546361 | 1_2:-59093527 | Msa0080730:three_prime_UTR |
| TCGAATAATGCAGTAATGCA+TGG | 0.549352 | 1_2:+59093548 | None:intergenic |
| TGTTGCTTGAACGGACAAAA+GGG | 0.551010 | 1_2:+59097225 | None:intergenic |
| GAATACTTACATCTTGATCA+AGG | 0.554101 | 1_2:+59096552 | None:intergenic |
| AACGATATTGGCAATGCTGA+GGG | 0.574974 | 1_2:+59094616 | None:intergenic |
| TTCGAAATATTGAGATGCGG+TGG | 0.584331 | 1_2:-59093530 | Msa0080730:three_prime_UTR |
| TGGGTGGTTAAGAATGTCAG+TGG | 0.584529 | 1_2:-59096647 | Msa0080730:CDS |
| CTCACACATGGATCCCAACC+AGG | 0.591438 | 1_2:-59097052 | Msa0080730:intron |
| GTGTGAGCTTCGGAGAGAGA+AGG | 0.595161 | 1_2:+59097068 | None:intergenic |
| AATAAGCAGGTAACCACTCG+TGG | 0.598050 | 1_2:+59093282 | None:intergenic |
| CAACGATATTGGCAATGCTG+AGG | 0.602070 | 1_2:+59094615 | None:intergenic |
| AAATTATGCAAAATAATACA+AGG | 0.604454 | 1_2:+59093321 | None:intergenic |
| GTCAGGATCCAGTTTGATGT+CGG | 0.604742 | 1_2:+59093480 | None:intergenic |
| ATCAGCCTGAAGCCTTATGA+GGG | 0.607448 | 1_2:+59094667 | None:intergenic |
| CCGAGAGGCAATTGTCTGAG+AGG | 0.623720 | 1_2:+59093627 | None:intergenic |
| CTGAAAACTACTCCAATCCA+AGG | 0.632206 | 1_2:-59096904 | Msa0080730:CDS |
| CTGGTGGACCCTTTACCTTG+CGG | 0.632785 | 1_2:-59096076 | Msa0080730:intron |
| AAAGATCTATGTTCCACGAG+TGG | 0.652955 | 1_2:-59093295 | Msa0080730:three_prime_UTR |
| TTATTCGAAATATTGAGATG+CGG | 0.659898 | 1_2:-59093533 | Msa0080730:three_prime_UTR |
| TTGTGATGAATCAAAGACGA+TGG | 0.690899 | 1_2:+59097099 | None:intergenic |
| TCAAACAAACTCCTACAACA+AGG | 0.714274 | 1_2:+59094639 | None:intergenic |
| TAAGGTAGATGAAAACCGAG+AGG | 0.750436 | 1_2:+59093612 | None:intergenic |
| TAATTGTTAGAAGAAATACA+CGG | 0.781581 | 1_2:+59097259 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATAATTGTTTATTTTC+AGG | - | chr1_2:59097167-59097186 | Msa0080730:five_prime_UTR | 10.0% |
| !! | CTTCTAACAATTAAAAAAAA+AGG | - | chr1_2:59093277-59093296 | Msa0080730:three_prime_UTR | 15.0% |
| !!! | GTAATATGTTTTTTGAAATA+AGG | - | chr1_2:59094024-59094043 | Msa0080730:intron | 15.0% |
| !!! | TATATAAATTTTCAAGTTCA+GGG | + | chr1_2:59095355-59095374 | None:intergenic | 15.0% |
| !!! | ATATATAAATTTTCAAGTTC+AGG | + | chr1_2:59095354-59095373 | None:intergenic | 15.0% |
| !!! | ATATATAAATTTTCAAGTTC+AGG | - | chr1_2:59095354-59095373 | Msa0080730:intron | 15.0% |
| !!! | TATATAAATTTTCAAGTTCA+GGG | - | chr1_2:59095355-59095374 | Msa0080730:intron | 15.0% |
| !! | ATAAAATTTATCACTTTAGT+TGG | + | chr1_2:59095650-59095669 | None:intergenic | 15.0% |
| !! | AAATTATGCAAAATAATACA+AGG | + | chr1_2:59097208-59097227 | None:intergenic | 15.0% |
| !! | TAATTGTTAGAAGAAATACA+CGG | + | chr1_2:59093270-59093289 | None:intergenic | 20.0% |
| !!! | TAACTTTGTTATCATTTTTG+TGG | - | chr1_2:59093827-59093846 | Msa0080730:intron | 20.0% |
| !!! | TTGTTTTGATTAAGTTTTTC+AGG | - | chr1_2:59093998-59094017 | Msa0080730:intron | 20.0% |
| !!! | TGTTTTGATTAAGTTTTTCA+GGG | - | chr1_2:59093999-59094018 | Msa0080730:intron | 20.0% |
| !!! | TTGAAGTTTTGTTAATTTCA+GGG | + | chr1_2:59095497-59095516 | None:intergenic | 20.0% |
| !!! | ATTGAAGTTTTGTTAATTTC+AGG | + | chr1_2:59095496-59095515 | None:intergenic | 20.0% |
| !!! | ATATAAATTTTCAAGTTCAG+GGG | + | chr1_2:59095356-59095375 | None:intergenic | 20.0% |
| !! | CTACAAATATGATTAGAAAA+TGG | + | chr1_2:59094992-59095011 | None:intergenic | 20.0% |
| !!! | CATTTTCTAATCATATTTGT+AGG | - | chr1_2:59094990-59095009 | Msa0080730:intron | 20.0% |
| !!! | AATGAAAATTTGACTAGTTA+AGG | + | chr1_2:59095067-59095086 | None:intergenic | 20.0% |
| !!! | GATAAAGTAATTTTAGTTAG+TGG | - | chr1_2:59095153-59095172 | Msa0080730:intron | 20.0% |
| !! | AAAACAAAACTTAGCTAATA+TGG | + | chr1_2:59095238-59095257 | None:intergenic | 20.0% |
| !!! | ATATAAATTTTCAAGTTCAG+GGG | - | chr1_2:59095356-59095375 | Msa0080730:intron | 20.0% |
| !!! | ATTGAAGTTTTGTTAATTTC+AGG | - | chr1_2:59095496-59095515 | Msa0080730:intron | 20.0% |
| !!! | TTGAAGTTTTGTTAATTTCA+GGG | - | chr1_2:59095497-59095516 | Msa0080730:intron | 20.0% |
| !!! | TTTTATTTATGCTTTGTATC+TGG | - | chr1_2:59095664-59095683 | Msa0080730:intron | 20.0% |
| !!! | TTTTATTTGTATTGTTCTAC+AGG | - | chr1_2:59095806-59095825 | Msa0080730:intron | 20.0% |
| !! | TCAAAATGAAAAAAAGAAAC+AGG | + | chr1_2:59096141-59096160 | None:intergenic | 20.0% |
| !! | TGAAAATTCTAACTATAGTT+TGG | - | chr1_2:59096166-59096185 | Msa0080730:intron | 20.0% |
| !!! | ATGTTATTGTTGTTTTAGTT+GGG | - | chr1_2:59096525-59096544 | Msa0080730:intron | 20.0% |
| !! | TAATTAATACAACAAATTGC+TGG | - | chr1_2:59096838-59096857 | Msa0080730:intron | 20.0% |
| !! | TTTCTTTCATGTTCTTTTCA+AGG | - | chr1_2:59093650-59093669 | Msa0080730:CDS | 25.0% |
| !! | TGTTGTATTTTGTATTTTGC+AGG | - | chr1_2:59093761-59093780 | Msa0080730:intron | 25.0% |
| !! | TTTGGCATTTTACATTCTAT+CGG | - | chr1_2:59093791-59093810 | Msa0080730:intron | 25.0% |
| !!! | GTTTTGATTAAGTTTTTCAG+GGG | - | chr1_2:59094000-59094019 | Msa0080730:intron | 25.0% |
| ! | ATTAAGTAGTTTATCCAAAC+AGG | + | chr1_2:59094050-59094069 | None:intergenic | 25.0% |
| ! | TTGAAATAAGCTAATCCAAA+CGG | - | chr1_2:59094280-59094299 | Msa0080730:intron | 25.0% |
| !!! | ATTTTGACTATAACACCATA+AGG | + | chr1_2:59094532-59094551 | None:intergenic | 25.0% |
| !!! | TGAAGTTTTGTTAATTTCAG+GGG | + | chr1_2:59095498-59095517 | None:intergenic | 25.0% |
| ! | TGACTAACAGAAAAATTTGA+CGG | + | chr1_2:59095432-59095451 | None:intergenic | 25.0% |
| !!! | TGATAATGCAATCACTTTTA+AGG | + | chr1_2:59095320-59095339 | None:intergenic | 25.0% |
| ! | ATTGCATTATCATTGAATTG+TGG | - | chr1_2:59094818-59094837 | Msa0080730:intron | 25.0% |
| ! | GATGATATACAACCATATAT+TGG | - | chr1_2:59094860-59094879 | Msa0080730:intron | 25.0% |
| ! | TAGAACAAATTGACAGAATT+TGG | - | chr1_2:59094891-59094910 | Msa0080730:intron | 25.0% |
| !! | TCCTTTTGAACATTATTGTA+GGG | + | chr1_2:59094921-59094940 | None:intergenic | 25.0% |
| !! | ATCCTTTTGAACATTATTGT+AGG | + | chr1_2:59094922-59094941 | None:intergenic | 25.0% |
| ! | TACAATAATGTTCAAAAGGA+TGG | - | chr1_2:59094921-59094940 | Msa0080730:intron | 25.0% |
| ! | AATGTATAGAATCTGGAAAA+TGG | + | chr1_2:59094961-59094980 | None:intergenic | 25.0% |
| ! | ACAATAATATATTGGCAGTA+TGG | + | chr1_2:59095262-59095281 | None:intergenic | 25.0% |
| ! | GACGGTATACAATAATATAT+TGG | + | chr1_2:59095270-59095289 | None:intergenic | 25.0% |
| !!! | TGATAATGCAATCACTTTTA+AGG | - | chr1_2:59095320-59095339 | Msa0080730:intron | 25.0% |
| !!! | TATAAATTTTCAAGTTCAGG+GGG | - | chr1_2:59095357-59095376 | Msa0080730:intron | 25.0% |
| ! | TGACTAACAGAAAAATTTGA+CGG | - | chr1_2:59095432-59095451 | Msa0080730:intron | 25.0% |
| !!! | TGAAGTTTTGTTAATTTCAG+GGG | - | chr1_2:59095498-59095517 | Msa0080730:intron | 25.0% |
| !! | AATTTTGCTCTTTTTATGGT+AGG | + | chr1_2:59095752-59095771 | None:intergenic | 25.0% |
| !! | CTTCTTTTATATTGCAGAAT+TGG | - | chr1_2:59095993-59096012 | Msa0080730:intron | 25.0% |
| !! | TTATATTGCAGAATTGGTTT+AGG | - | chr1_2:59095999-59096018 | Msa0080730:intron | 25.0% |
| ! | TGCAATCATAAATTTCCATT+TGG | + | chr1_2:59096255-59096274 | None:intergenic | 25.0% |
| ! | ATTTGTAATTTCCTAAGGAT+GGG | - | chr1_2:59096314-59096333 | Msa0080730:intron | 25.0% |
| ! | ATAACATCTTTCAATTTCCT+GGG | + | chr1_2:59096512-59096531 | None:intergenic | 25.0% |
| ! | AATAACATCTTTCAATTTCC+TGG | + | chr1_2:59096513-59096532 | None:intergenic | 25.0% |
| !!! | GATGTTATTGTTGTTTTAGT+TGG | - | chr1_2:59096524-59096543 | Msa0080730:intron | 25.0% |
| ! | AATTTATAGTACCCTGTTTA+TGG | - | chr1_2:59096581-59096600 | Msa0080730:CDS | 25.0% |
| ! | ATTTATAGTACCCTGTTTAT+GGG | - | chr1_2:59096582-59096601 | Msa0080730:CDS | 25.0% |
| ! | TTATTCGAAATATTGAGATG+CGG | - | chr1_2:59096993-59097012 | Msa0080730:intron | 25.0% |
| !! | TTTGTACCTTTTATGAGAAA+TGG | - | chr1_2:59097113-59097132 | Msa0080730:five_prime_UTR | 25.0% |
| !! | AATTTTGCATGAAAATAAGC+AGG | + | chr1_2:59097260-59097279 | None:intergenic | 25.0% |
| !!! | TGCTTATTTTCATGCAAAAT+TGG | - | chr1_2:59097259-59097278 | Msa0080730:five_prime_UTR | 25.0% |
| ! | TACTTTCTATGTTGCTTGAA+CGG | + | chr1_2:59093313-59093332 | None:intergenic | 30.0% |
| ! | TCGCAAATCTAACAAACTTT+TGG | - | chr1_2:59093344-59093363 | Msa0080730:three_prime_UTR | 30.0% |
| AAGAAAACGTTGAATTTACC+TGG | + | chr1_2:59093495-59093514 | None:intergenic | 30.0% | |
| ATTGAAACCAGATCTAAGAA+TGG | + | chr1_2:59093521-59093540 | None:intergenic | 30.0% | |
| ! | ATTCTTAGATCTGGTTTCAA+TGG | - | chr1_2:59093520-59093539 | Msa0080730:three_prime_UTR | 30.0% |
| !!! | GAATTTTAGTTGGAATGAGA+TGG | - | chr1_2:59093904-59093923 | Msa0080730:intron | 30.0% |
| ! | TGGAATGAAATTGATGATCT+TGG | - | chr1_2:59093927-59093946 | Msa0080730:intron | 30.0% |
| GAATACTTACATCTTGATCA+AGG | + | chr1_2:59093977-59093996 | None:intergenic | 30.0% | |
| !!! | TTTTTGAAATAAGGCCTGTT+TGG | - | chr1_2:59094033-59094052 | Msa0080730:intron | 30.0% |
| ATGTAGCTGAAAACAACTAA+TGG | - | chr1_2:59094191-59094210 | Msa0080730:intron | 30.0% | |
| TGAAATAAGCTAATCCAAAC+GGG | - | chr1_2:59094281-59094300 | Msa0080730:intron | 30.0% | |
| !!! | TTTTTTTTCACTGCAGTCAT+TGG | - | chr1_2:59094396-59094415 | Msa0080730:intron | 30.0% |
| !! | ATGGTGTTATAGTCAAAATG+TGG | - | chr1_2:59094533-59094552 | Msa0080730:intron | 30.0% |
| TGACGAAACTTACAATTTCA+GGG | + | chr1_2:59095527-59095546 | None:intergenic | 30.0% | |
| TTGACGAAACTTACAATTTC+AGG | + | chr1_2:59095526-59095545 | None:intergenic | 30.0% | |
| !!! | AAGTTTTGTTAATTTCAGGG+GGG | + | chr1_2:59095500-59095519 | None:intergenic | 30.0% |
| !!! | GAAGTTTTGTTAATTTCAGG+GGG | + | chr1_2:59095499-59095518 | None:intergenic | 30.0% |
| ATTAACGTTGTGCAATTTCA+GGG | + | chr1_2:59095468-59095487 | None:intergenic | 30.0% | |
| TAACAGAAAAATTTGACGGA+GGG | + | chr1_2:59095436-59095455 | None:intergenic | 30.0% | |
| AACATAAGTGCAAAACTTCA+GGG | + | chr1_2:59095387-59095406 | None:intergenic | 30.0% | |
| ACCCTACAATAATGTTCAAA+AGG | - | chr1_2:59094917-59094936 | Msa0080730:intron | 30.0% | |
| AGCTAAGAATGTATAGAATC+TGG | + | chr1_2:59094968-59094987 | None:intergenic | 30.0% | |
| AGGTAGTTAGTATTGTCTTA+AGG | - | chr1_2:59095010-59095029 | Msa0080730:intron | 30.0% | |
| AGTTAAGGAATTCATAATCG+AGG | + | chr1_2:59095052-59095071 | None:intergenic | 30.0% | |
| CATTAAGGAATTCTAGCAAT+AGG | + | chr1_2:59095100-59095119 | None:intergenic | 30.0% | |
| CTTTATCTAAACAGACATTG+AGG | + | chr1_2:59095140-59095159 | None:intergenic | 30.0% | |
| ! | TTAGTTAGTGGTGTGTTTTT+AGG | - | chr1_2:59095165-59095184 | Msa0080730:intron | 30.0% |
| !! | TAGGAAGTGCTTAAAATGAT+TGG | - | chr1_2:59095184-59095203 | Msa0080730:intron | 30.0% |
| !! | AGGAAGTGCTTAAAATGATT+GGG | - | chr1_2:59095185-59095204 | Msa0080730:intron | 30.0% |
| TTGGGTTAAACTACATTGTT+TGG | - | chr1_2:59095203-59095222 | Msa0080730:intron | 30.0% | |
| !! | GCATATTAGCTAAGTTTTGA+CGG | + | chr1_2:59094842-59094861 | None:intergenic | 30.0% |
| ATTGCATTATCACTGAATTG+TGG | + | chr1_2:59095312-59095331 | None:intergenic | 30.0% | |
| AACATAAGTGCAAAACTTCA+GGG | - | chr1_2:59095387-59095406 | Msa0080730:intron | 30.0% | |
| TAACAGAAAAATTTGACGGA+GGG | - | chr1_2:59095436-59095455 | Msa0080730:intron | 30.0% | |
| ATTAACGTTGTGCAATTTCA+GGG | - | chr1_2:59095468-59095487 | Msa0080730:intron | 30.0% | |
| !!! | GAAGTTTTGTTAATTTCAGG+GGG | - | chr1_2:59095499-59095518 | Msa0080730:intron | 30.0% |
| !!! | AAGTTTTGTTAATTTCAGGG+GGG | - | chr1_2:59095500-59095519 | Msa0080730:intron | 30.0% |
| TTGACGAAACTTACAATTTC+AGG | - | chr1_2:59095526-59095545 | Msa0080730:intron | 30.0% | |
| TGACGAAACTTACAATTTCA+GGG | - | chr1_2:59095527-59095546 | Msa0080730:intron | 30.0% | |
| ACTTTCTGAATAAGTCTGAT+CGG | + | chr1_2:59095591-59095610 | None:intergenic | 30.0% | |
| GTTTAGTACTAAATAAGCTG+CGG | - | chr1_2:59095620-59095639 | Msa0080730:intron | 30.0% | |
| ATTTATGCTTTGTATCTGGA+TGG | - | chr1_2:59095668-59095687 | Msa0080730:intron | 30.0% | |
| ! | GCACAATTTTGCTCTTTTTA+TGG | + | chr1_2:59095756-59095775 | None:intergenic | 30.0% |
| ! | AAATTGTGCTTTCTGGTATT+TGG | - | chr1_2:59095767-59095786 | Msa0080730:intron | 30.0% |
| TTTGGTAAAACCAACGATAT+TGG | + | chr1_2:59095925-59095944 | None:intergenic | 30.0% | |
| ! | GGTTTTACCAAATGCAAAAA+AGG | - | chr1_2:59095933-59095952 | Msa0080730:intron | 30.0% |
| TACTAAATGCATGTACCAAA+TGG | - | chr1_2:59096237-59096256 | Msa0080730:intron | 30.0% | |
| TAGTCATGTTAAGGTGTAAT+TGG | + | chr1_2:59096282-59096301 | None:intergenic | 30.0% | |
| ACACCTTAACATGACTAATT+TGG | - | chr1_2:59096285-59096304 | Msa0080730:intron | 30.0% | |
| TGACCAAATTAGTCATGTTA+AGG | + | chr1_2:59096291-59096310 | None:intergenic | 30.0% | |
| !! | CACTGATTTGTAATTTCCTA+AGG | - | chr1_2:59096309-59096328 | Msa0080730:intron | 30.0% |
| GATTTGTAATTTCCTAAGGA+TGG | - | chr1_2:59096313-59096332 | Msa0080730:intron | 30.0% | |
| GAGATAATCACCAAACTAAA+TGG | + | chr1_2:59096456-59096475 | None:intergenic | 30.0% | |
| ! | TTTGGTGATTATCTCTTGAA+AGG | - | chr1_2:59096461-59096480 | Msa0080730:intron | 30.0% |
| TTTATAGTACCCTGTTTATG+GGG | - | chr1_2:59096583-59096602 | Msa0080730:CDS | 30.0% | |
| GAAACACAAATGAAAACAAG+AGG | + | chr1_2:59096624-59096643 | None:intergenic | 30.0% | |
| AAACAATAAACCAATGTGAG+GGG | + | chr1_2:59096786-59096805 | None:intergenic | 30.0% | |
| GAAACAATAAACCAATGTGA+GGG | + | chr1_2:59096787-59096806 | None:intergenic | 30.0% | |
| TGAAACAATAAACCAATGTG+AGG | + | chr1_2:59096788-59096807 | None:intergenic | 30.0% | |
| AGTAACTATGCAAGTTTGAT+AGG | + | chr1_2:59097074-59097093 | None:intergenic | 30.0% | |
| TTCAAGCCATTTCTCATAAA+AGG | + | chr1_2:59097122-59097141 | None:intergenic | 30.0% | |
| GTTAGATTTGCGAGTAAGAT+TGG | + | chr1_2:59093337-59093356 | None:intergenic | 35.0% | |
| TTGTGATGAATCAAAGACGA+TGG | + | chr1_2:59093430-59093449 | None:intergenic | 35.0% | |
| AACGTTGAATTTACCTGGTT+GGG | + | chr1_2:59093490-59093509 | None:intergenic | 35.0% | |
| AAACGTTGAATTTACCTGGT+TGG | + | chr1_2:59093491-59093510 | None:intergenic | 35.0% | |
| TCTTCAACCATTCTTAGATC+TGG | - | chr1_2:59093511-59093530 | Msa0080730:three_prime_UTR | 35.0% | |
| AAAGAAACAAGTCCTTGGAT+TGG | + | chr1_2:59093637-59093656 | None:intergenic | 35.0% | |
| ACATGAAAGAAACAAGTCCT+TGG | + | chr1_2:59093642-59093661 | None:intergenic | 35.0% | |
| ! | ATTTTGTATTTTGCAGGCTG+CGG | - | chr1_2:59093767-59093786 | Msa0080730:intron | 35.0% |
| ! | TTCTTGCTGCTCTTGATTTT+TGG | - | chr1_2:59093859-59093878 | Msa0080730:intron | 35.0% |
| ! | TCTTGCTGCTCTTGATTTTT+GGG | - | chr1_2:59093860-59093879 | Msa0080730:intron | 35.0% |
| !! | GTCAGTGGAAGAATTTTAGT+TGG | - | chr1_2:59093894-59093913 | Msa0080730:intron | 35.0% |
| !! | TTTTAGTTGGAATGAGATGG+TGG | - | chr1_2:59093907-59093926 | Msa0080730:intron | 35.0% |
| AACCTGACTAGCATAAGAAT+GGG | - | chr1_2:59094338-59094357 | Msa0080730:intron | 35.0% | |
| GGATGAACAAGAAAGATTCA+TGG | - | chr1_2:59094422-59094441 | Msa0080730:intron | 35.0% | |
| ! | AGAAAGATTCATGGCTTTTC+TGG | - | chr1_2:59094431-59094450 | Msa0080730:intron | 35.0% |
| CTATATATTCTCTTACCGCA+AGG | + | chr1_2:59094468-59094487 | None:intergenic | 35.0% | |
| TAGTCAAAATGTGGTTGTTC+TGG | - | chr1_2:59094542-59094561 | Msa0080730:intron | 35.0% | |
| ACGAAACTTACAATTTCAGG+GGG | + | chr1_2:59095529-59095548 | None:intergenic | 35.0% | |
| GACGAAACTTACAATTTCAG+GGG | + | chr1_2:59095528-59095547 | None:intergenic | 35.0% | |
| TTAACGTTGTGCAATTTCAG+GGG | + | chr1_2:59095469-59095488 | None:intergenic | 35.0% | |
| GATTAACGTTGTGCAATTTC+AGG | + | chr1_2:59095467-59095486 | None:intergenic | 35.0% | |
| AACAGAAAAATTTGACGGAG+GGG | + | chr1_2:59095437-59095456 | None:intergenic | 35.0% | |
| CTAACAGAAAAATTTGACGG+AGG | + | chr1_2:59095435-59095454 | None:intergenic | 35.0% | |
| ACATAAGTGCAAAACTTCAG+GGG | + | chr1_2:59095388-59095407 | None:intergenic | 35.0% | |
| GAACATAAGTGCAAAACTTC+AGG | + | chr1_2:59095386-59095405 | None:intergenic | 35.0% | |
| ACAACCATATATTGGCAGTA+TGG | - | chr1_2:59094868-59094887 | Msa0080730:intron | 35.0% | |
| TCTACCATACTGCCAATATA+TGG | + | chr1_2:59094875-59094894 | None:intergenic | 35.0% | |
| GTCTTAAGGTTGTTAGAAGT+TGG | - | chr1_2:59095024-59095043 | Msa0080730:intron | 35.0% | |
| GAACATAAGTGCAAAACTTC+AGG | - | chr1_2:59095386-59095405 | Msa0080730:intron | 35.0% | |
| ACATAAGTGCAAAACTTCAG+GGG | - | chr1_2:59095388-59095407 | Msa0080730:intron | 35.0% | |
| CTAACAGAAAAATTTGACGG+AGG | - | chr1_2:59095435-59095454 | Msa0080730:intron | 35.0% | |
| AACAGAAAAATTTGACGGAG+GGG | - | chr1_2:59095437-59095456 | Msa0080730:intron | 35.0% | |
| GATTAACGTTGTGCAATTTC+AGG | - | chr1_2:59095467-59095486 | Msa0080730:intron | 35.0% | |
| TTAACGTTGTGCAATTTCAG+GGG | - | chr1_2:59095469-59095488 | Msa0080730:intron | 35.0% | |
| GACGAAACTTACAATTTCAG+GGG | - | chr1_2:59095528-59095547 | Msa0080730:intron | 35.0% | |
| ACGAAACTTACAATTTCAGG+GGG | - | chr1_2:59095529-59095548 | Msa0080730:intron | 35.0% | |
| CTTTCTGAATAAGTCTGATC+GGG | + | chr1_2:59095590-59095609 | None:intergenic | 35.0% | |
| AAGAGCAAAATTGTGCTTTC+TGG | - | chr1_2:59095760-59095779 | Msa0080730:intron | 35.0% | |
| TCAAACAAACTCCTACAACA+AGG | + | chr1_2:59095890-59095909 | None:intergenic | 35.0% | |
| !!! | TTGCACACCTTTTTTGCATT+TGG | + | chr1_2:59095943-59095962 | None:intergenic | 35.0% |
| AATATATCAAGCCCATCCTT+AGG | + | chr1_2:59096328-59096347 | None:intergenic | 35.0% | |
| ! | AAGGATGGGCTTGATATATT+TGG | - | chr1_2:59096328-59096347 | Msa0080730:intron | 35.0% |
| ATCACCAAACTAAATGGTTG+TGG | + | chr1_2:59096450-59096469 | None:intergenic | 35.0% | |
| ! | ATCTCTTGAAAGGCATAAGT+AGG | - | chr1_2:59096471-59096490 | Msa0080730:intron | 35.0% |
| ! | GGCATTCATTTTATATTCCC+AGG | - | chr1_2:59096492-59096511 | Msa0080730:intron | 35.0% |
| ! | ATCTCTTGAAAGGCATAAGT+AGG | - | chr1_2:59096471-59096490 | Msa0080730:intron | 35.0% |
| TATGAAAACATTCTTGCCGT+AGG | - | chr1_2:59096664-59096683 | Msa0080730:CDS | 35.0% | |
| TAGACTTAGAGAAACTCCTA+CGG | + | chr1_2:59096683-59096702 | None:intergenic | 35.0% | |
| AGAAATCCTTCATATTGGGA+GGG | + | chr1_2:59096761-59096780 | None:intergenic | 35.0% | |
| AACAATAAACCAATGTGAGG+GGG | + | chr1_2:59096785-59096804 | None:intergenic | 35.0% | |
| ! | AACACTAAATGCTGACTGTA+AGG | + | chr1_2:59096935-59096954 | None:intergenic | 35.0% |
| TCGAATAATGCAGTAATGCA+TGG | + | chr1_2:59096981-59097000 | None:intergenic | 35.0% | |
| !! | TTATTTTGCCGACATCAAAC+TGG | - | chr1_2:59097038-59097057 | Msa0080730:intron | 35.0% |
| ! | TGTTGCTTGAACGGACAAAA+GGG | + | chr1_2:59093304-59093323 | None:intergenic | 40.0% |
| ! | ATGTTGCTTGAACGGACAAA+AGG | + | chr1_2:59093305-59093324 | None:intergenic | 40.0% |
| CGATCTGAAAAATCTCAGCA+AGG | - | chr1_2:59093386-59093405 | Msa0080730:three_prime_UTR | 40.0% | |
| TCTCAGCAAGGTGTAAAATC+TGG | - | chr1_2:59093398-59093417 | Msa0080730:three_prime_UTR | 40.0% | |
| CTGAAAACTACTCCAATCCA+AGG | - | chr1_2:59093622-59093641 | Msa0080730:CDS | 40.0% | |
| !! | ATGATCTTGGTGAGAGTGTT+TGG | - | chr1_2:59093940-59093959 | Msa0080730:intron | 40.0% |
| !! | ATACTGCTTGGGAGTGTTTA+TGG | + | chr1_2:59094235-59094254 | None:intergenic | 40.0% |
| AAGCACTTGTGATACTGCTT+GGG | + | chr1_2:59094246-59094265 | None:intergenic | 40.0% | |
| ! | AAAGCACTTGTGATACTGCT+TGG | + | chr1_2:59094247-59094266 | None:intergenic | 40.0% |
| GAACCTGACTAGCATAAGAA+TGG | - | chr1_2:59094337-59094356 | Msa0080730:intron | 40.0% | |
| ACCTGACTAGCATAAGAATG+GGG | - | chr1_2:59094339-59094358 | Msa0080730:intron | 40.0% | |
| ! | AAGATTCATGGCTTTTCTGG+TGG | - | chr1_2:59094434-59094453 | Msa0080730:intron | 40.0% |
| TTCTCTTACCGCAAGGTAAA+GGG | + | chr1_2:59094461-59094480 | None:intergenic | 40.0% | |
| ATTCTCTTACCGCAAGGTAA+AGG | + | chr1_2:59094462-59094481 | None:intergenic | 40.0% | |
| !! | GTGATAGTTCACTTTTGCCT+AGG | - | chr1_2:59094505-59094524 | Msa0080730:intron | 40.0% |
| CTATAACACCATAAGGACCT+AGG | + | chr1_2:59094525-59094544 | None:intergenic | 40.0% | |
| CGAAACTTACAATTTCAGGG+GGG | + | chr1_2:59095530-59095549 | None:intergenic | 40.0% | |
| TAACGTTGTGCAATTTCAGG+GGG | + | chr1_2:59095470-59095489 | None:intergenic | 40.0% | |
| ACAGAAAAATTTGACGGAGG+GGG | + | chr1_2:59095438-59095457 | None:intergenic | 40.0% | |
| ATAAGTGCAAAACTTCAGGG+GGG | + | chr1_2:59095390-59095409 | None:intergenic | 40.0% | |
| CATAAGTGCAAAACTTCAGG+GGG | + | chr1_2:59095389-59095408 | None:intergenic | 40.0% | |
| TCTCTCTGTTTGCGACATTA+AGG | + | chr1_2:59095115-59095134 | None:intergenic | 40.0% | |
| CATAAGTGCAAAACTTCAGG+GGG | - | chr1_2:59095389-59095408 | Msa0080730:intron | 40.0% | |
| ATAAGTGCAAAACTTCAGGG+GGG | - | chr1_2:59095390-59095409 | Msa0080730:intron | 40.0% | |
| ACAGAAAAATTTGACGGAGG+GGG | - | chr1_2:59095438-59095457 | Msa0080730:intron | 40.0% | |
| TAACGTTGTGCAATTTCAGG+GGG | - | chr1_2:59095470-59095489 | Msa0080730:intron | 40.0% | |
| CGAAACTTACAATTTCAGGG+GGG | - | chr1_2:59095530-59095549 | Msa0080730:intron | 40.0% | |
| !! | TAGCTTTGTCAATCATCACG+CGG | - | chr1_2:59095695-59095714 | Msa0080730:intron | 40.0% |
| ! | TTGTTCTACAGGCAGTTTTG+TGG | - | chr1_2:59095817-59095836 | Msa0080730:intron | 40.0% |
| !! | GGCAGTTTTGTGGATTATGT+TGG | - | chr1_2:59095827-59095846 | Msa0080730:intron | 40.0% |
| TGGCAATATTCTCCCTCATA+AGG | - | chr1_2:59095847-59095866 | Msa0080730:intron | 40.0% | |
| ! | GCTGATTATCTCCTTGTTGT+AGG | - | chr1_2:59095876-59095895 | Msa0080730:intron | 40.0% |
| AACGATATTGGCAATGCTGA+GGG | + | chr1_2:59095913-59095932 | None:intergenic | 40.0% | |
| !! | GCAGAATTGGTTTAGGTTGA+TGG | - | chr1_2:59096006-59096025 | Msa0080730:intron | 40.0% |
| TCAGCAACTTTACACGAAGT+GGG | + | chr1_2:59096201-59096220 | None:intergenic | 40.0% | |
| GGTACATGCATTTAGTAGTC+AGG | + | chr1_2:59096234-59096253 | None:intergenic | 40.0% | |
| GGATCCACAACCATTTAGTT+TGG | - | chr1_2:59096443-59096462 | Msa0080730:intron | 40.0% | |
| TTGGGCGATTATCTCTTGAA+AGG | - | chr1_2:59096543-59096562 | Msa0080730:intron | 40.0% | |
| GTAGGAGTTTCTCTAAGTCT+AGG | - | chr1_2:59096682-59096701 | Msa0080730:CDS | 40.0% | |
| CAGAAATCCTTCATATTGGG+AGG | + | chr1_2:59096762-59096781 | None:intergenic | 40.0% | |
| GGGCAGAAATCCTTCATATT+GGG | + | chr1_2:59096765-59096784 | None:intergenic | 40.0% | |
| TAAGGTAGATGAAAACCGAG+AGG | + | chr1_2:59096917-59096936 | None:intergenic | 40.0% | |
| TTCGAAATATTGAGATGCGG+TGG | - | chr1_2:59096996-59097015 | Msa0080730:intron | 40.0% | |
| TGCAAGTTTGATAGGTAGTC+AGG | + | chr1_2:59097066-59097085 | None:intergenic | 40.0% | |
| AAAGATCTATGTTCCACGAG+TGG | - | chr1_2:59097231-59097250 | Msa0080730:five_prime_UTR | 40.0% | |
| !! | TGCTGCTCTTGATTTTTGGG+TGG | - | chr1_2:59093863-59093882 | Msa0080730:intron | 45.0% |
| TGGGTGGTTAAGAATGTCAG+TGG | - | chr1_2:59093879-59093898 | Msa0080730:intron | 45.0% | |
| ATAAGCTAATCCAAACGGGC+CGG | - | chr1_2:59094285-59094304 | Msa0080730:intron | 45.0% | |
| ! | AAAAGTGGCGGAGATATCAC+CGG | + | chr1_2:59094307-59094326 | None:intergenic | 45.0% |
| TCAGCAGAGTTGAAAAGTGG+CGG | + | chr1_2:59094319-59094338 | None:intergenic | 45.0% | |
| GGTTCAGCAGAGTTGAAAAG+TGG | + | chr1_2:59094322-59094341 | None:intergenic | 45.0% | |
| ACCCCATTCTTATGCTAGTC+AGG | + | chr1_2:59094343-59094362 | None:intergenic | 45.0% | |
| ! | TTTCACTGCAGTCATTGGCT+AGG | - | chr1_2:59094401-59094420 | Msa0080730:intron | 45.0% |
| ! | CACTTTTGCCTAGGTCCTTA+TGG | - | chr1_2:59094514-59094533 | Msa0080730:intron | 45.0% |
| AACGTTGTGCAATTTCAGGG+GGG | + | chr1_2:59095471-59095490 | None:intergenic | 45.0% | |
| AACGTTGTGCAATTTCAGGG+GGG | - | chr1_2:59095471-59095490 | Msa0080730:intron | 45.0% | |
| ! | AGCTTTGTCAATCATCACGC+GGG | - | chr1_2:59095696-59095715 | Msa0080730:intron | 45.0% |
| ATTCTCCCTCATAAGGCTTC+AGG | - | chr1_2:59095854-59095873 | Msa0080730:intron | 45.0% | |
| ! | ATCAGCCTGAAGCCTTATGA+GGG | + | chr1_2:59095862-59095881 | None:intergenic | 45.0% |
| ! | AATCAGCCTGAAGCCTTATG+AGG | + | chr1_2:59095863-59095882 | None:intergenic | 45.0% |
| CAACGATATTGGCAATGCTG+AGG | + | chr1_2:59095914-59095933 | None:intergenic | 45.0% | |
| CTCAGCATTGCCAATATCGT+TGG | - | chr1_2:59095912-59095931 | Msa0080730:intron | 45.0% | |
| GTCAGCAACTTTACACGAAG+TGG | + | chr1_2:59096202-59096221 | None:intergenic | 45.0% | |
| CTGCATTCTTGTATCTGCGA+CGG | - | chr1_2:59096421-59096440 | Msa0080730:intron | 45.0% | |
| TGCATTCTTGTATCTGCGAC+GGG | - | chr1_2:59096422-59096441 | Msa0080730:intron | 45.0% | |
| TAGTACCCTGTTTATGGGGT+TGG | - | chr1_2:59096587-59096606 | Msa0080730:CDS | 45.0% | |
| AGTACCCTGTTTATGGGGTT+GGG | - | chr1_2:59096588-59096607 | Msa0080730:CDS | 45.0% | |
| AGTTCCCAACCCCATAAACA+GGG | + | chr1_2:59096595-59096614 | None:intergenic | 45.0% | |
| AAGTTCCCAACCCCATAAAC+AGG | + | chr1_2:59096596-59096615 | None:intergenic | 45.0% | |
| TCCTTCATATTGGGAGGGAA+GGG | + | chr1_2:59096756-59096775 | None:intergenic | 45.0% | |
| ATCCTTCATATTGGGAGGGA+AGG | + | chr1_2:59096757-59096776 | None:intergenic | 45.0% | |
| GGGGCAGAAATCCTTCATAT+TGG | + | chr1_2:59096766-59096785 | None:intergenic | 45.0% | |
| GAAATATTGAGATGCGGTGG+AGG | - | chr1_2:59096999-59097018 | Msa0080730:intron | 45.0% | |
| GTCAGGATCCAGTTTGATGT+CGG | + | chr1_2:59097049-59097068 | None:intergenic | 45.0% | |
| AATAAGCAGGTAACCACTCG+TGG | + | chr1_2:59097247-59097266 | None:intergenic | 45.0% | |
| TGGGATCCATGTGTGAGCTT+CGG | + | chr1_2:59093471-59093490 | None:intergenic | 50.0% | |
| ! | TATTTTGCAGGCTGCGGCTT+TGG | - | chr1_2:59093773-59093792 | Msa0080730:intron | 50.0% |
| GCTTTGTCAATCATCACGCG+GGG | - | chr1_2:59095697-59095716 | Msa0080730:intron | 50.0% | |
| CCTTCATATTGGGAGGGAAG+GGG | + | chr1_2:59096755-59096774 | None:intergenic | 50.0% | |
| CCTCTCAGACAATTGCCTCT+CGG | - | chr1_2:59096899-59096918 | Msa0080730:CDS | 50.0% | |
| GTGTGAGCTTCGGAGAGAGA+AGG | + | chr1_2:59093461-59093480 | None:intergenic | 55.0% | |
| CTCTCTCCGAAGCTCACACA+TGG | - | chr1_2:59093462-59093481 | Msa0080730:three_prime_UTR | 55.0% | |
| CTCACACATGGATCCCAACC+AGG | - | chr1_2:59093474-59093493 | Msa0080730:three_prime_UTR | 55.0% | |
| CAGCTACAGTCTGCGCACAA+AGG | + | chr1_2:59093605-59093624 | None:intergenic | 55.0% | |
| ! | CTGGTGGACCCTTTACCTTG+CGG | - | chr1_2:59094450-59094469 | Msa0080730:intron | 55.0% |
| CCCCTTCCCTCCCAATATGA+AGG | - | chr1_2:59096752-59096771 | Msa0080730:intron | 55.0% | |
| GGATTTCTGCCCCCTCACAT+TGG | - | chr1_2:59096773-59096792 | Msa0080730:intron | 55.0% | |
| CCGAGAGGCAATTGTCTGAG+AGG | + | chr1_2:59096902-59096921 | None:intergenic | 55.0% | |
| GGAGATATCACCGGCCCGTT+TGG | + | chr1_2:59094298-59094317 | None:intergenic | 60.0% | |
| TTGGGAGGGAAGGGGAGACA+GGG | + | chr1_2:59096747-59096766 | None:intergenic | 60.0% | |
| ATTGGGAGGGAAGGGGAGAC+AGG | + | chr1_2:59096748-59096767 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 59093266 | 59097282 | 59093266 | ID=Msa0080730;Name=Msa0080730 |
| chr1_2 | mRNA | 59093266 | 59097282 | 59093266 | ID=Msa0080730-mRNA-1;Parent=Msa0080730;Name=Msa0080730-mRNA-1;_AED=0.07;_eAED=0.07;_QI=215|1|1|1|1|1|6|322|183 |
| chr1_2 | exon | 59093266 | 59093676 | 59093266 | ID=Msa0080730-mRNA-1:exon:19134;Parent=Msa0080730-mRNA-1 |
| chr1_2 | exon | 59094594 | 59094720 | 59094594 | ID=Msa0080730-mRNA-1:exon:19133;Parent=Msa0080730-mRNA-1 |
| chr1_2 | exon | 59096077 | 59096136 | 59096077 | ID=Msa0080730-mRNA-1:exon:19132;Parent=Msa0080730-mRNA-1 |
| chr1_2 | exon | 59096562 | 59096765 | 59096562 | ID=Msa0080730-mRNA-1:exon:19131;Parent=Msa0080730-mRNA-1 |
| chr1_2 | exon | 59096877 | 59096933 | 59096877 | ID=Msa0080730-mRNA-1:exon:19130;Parent=Msa0080730-mRNA-1 |
| chr1_2 | exon | 59097053 | 59097282 | 59097053 | ID=Msa0080730-mRNA-1:exon:19129;Parent=Msa0080730-mRNA-1 |
| chr1_2 | five_prime_UTR | 59097068 | 59097282 | 59097068 | ID=Msa0080730-mRNA-1:five_prime_utr;Parent=Msa0080730-mRNA-1 |
| chr1_2 | CDS | 59097053 | 59097067 | 59097053 | ID=Msa0080730-mRNA-1:cds;Parent=Msa0080730-mRNA-1 |
| chr1_2 | CDS | 59096877 | 59096933 | 59096877 | ID=Msa0080730-mRNA-1:cds;Parent=Msa0080730-mRNA-1 |
| chr1_2 | CDS | 59096562 | 59096765 | 59096562 | ID=Msa0080730-mRNA-1:cds;Parent=Msa0080730-mRNA-1 |
| chr1_2 | CDS | 59096077 | 59096136 | 59096077 | ID=Msa0080730-mRNA-1:cds;Parent=Msa0080730-mRNA-1 |
| chr1_2 | CDS | 59094594 | 59094720 | 59094594 | ID=Msa0080730-mRNA-1:cds;Parent=Msa0080730-mRNA-1 |
| chr1_2 | CDS | 59093588 | 59093676 | 59093588 | ID=Msa0080730-mRNA-1:cds;Parent=Msa0080730-mRNA-1 |
| chr1_2 | three_prime_UTR | 59093266 | 59093587 | 59093266 | ID=Msa0080730-mRNA-1:three_prime_utr;Parent=Msa0080730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
