AlfalfaGEDB | Msa1256340

M. sativa cultivar zhongmu-4 / Msa1256340

KEGG: K14505
GO: GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009987 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0090558 GO:0090627
PFAM: PF00134.26

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1256340	XP_013457455.1	98.270	289	5	0	1	289	71	359	0.0	587

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1256340	sp\|Q9FGQ7\|CCD32_ARATH	53.925	293	117	5	3	289	87	367	8.63e-104	310

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1256340	A0A072UQ65	98.270	289	5	0	1	289	71	359	0.0	587

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000330	Msa1256340	0.835995	1.212947e-56	-8.615850e-47
Msa0016670	Msa1256340	0.828960	6.721202e-55	-8.615850e-47
Msa0074320	Msa1256340	0.801459	8.915702e-49	-8.615850e-47
Msa0075220	Msa1256340	0.812499	4.111082e-51	-8.615850e-47
Msa0110970	Msa1256340	0.808687	2.740302e-50	-8.615850e-47
Msa0115160	Msa1256340	0.818298	2.108633e-52	-8.615850e-47
Msa0118570	Msa1256340	0.809948	1.469829e-50	-8.615850e-47
Msa0650090	Msa1256340	0.817747	2.809006e-52	-8.615850e-47
Msa0677290	Msa1256340	0.818415	1.983752e-52	-8.615850e-47
Msa0683570	Msa1256340	0.812372	4.383443e-51	-8.615850e-47
Msa0692080	Msa1256340	0.842415	2.623129e-58	-8.615850e-47
Msa0738040	Msa1256340	0.816986	4.167219e-52	-8.615850e-47
Msa0749740	Msa1256340	0.804661	1.941237e-49	-8.615850e-47
Msa0754520	Msa1256340	0.819167	1.339111e-52	-8.615850e-47
Msa0833220	Msa1256340	0.813201	2.886231e-51	-8.615850e-47
Msa0134180	Msa1256340	0.818633	1.770241e-52	-8.615850e-47
Msa0167520	Msa1256340	0.804330	2.275152e-49	-8.615850e-47
Msa0180930	Msa1256340	0.807238	5.573671e-50	-8.615850e-47
Msa0213280	Msa1256340	0.803938	2.744873e-49	-8.615850e-47
Msa1232710	Msa1256340	0.859681	3.495119e-63	-8.615850e-47
Msa1252190	Msa1256340	0.803143	4.011847e-49	-8.615850e-47
Msa1253310	Msa1256340	0.805982	1.026062e-49	-8.615850e-47
Msa1254610	Msa1256340	0.806765	7.016646e-50	-8.615850e-47
Msa1256340	Msa1292830	0.800309	1.531019e-48	-8.615850e-47
Msa1256340	Msa1296580	0.805912	1.061319e-49	-8.615850e-47
Msa1256340	Msa1307570	0.837406	5.295580e-57	-8.615850e-47
Msa1256340	Msa1313300	0.856823	2.478788e-62	-8.615850e-47
Msa1256340	Msa1446810	0.801522	8.654316e-49	-8.615850e-47
Msa1256340	Msa1459380	0.809454	1.876873e-50	-8.615850e-47
Msa1256340	Msa1466990	0.809844	1.548079e-50	-8.615850e-47
Msa0434920	Msa1256340	0.812678	3.756587e-51	-8.615850e-47
Msa0467300	Msa1256340	0.801300	9.607834e-49	-8.615850e-47
Msa1037640	Msa1256340	0.819252	1.280738e-52	-8.615850e-47
Msa1045140	Msa1256340	0.817174	3.781031e-52	-8.615850e-47
Msa1066490	Msa1256340	0.802568	5.274289e-49	-8.615850e-47
Msa1089000	Msa1256340	0.808383	3.182636e-50	-8.615850e-47
Msa1091520	Msa1256340	0.821005	5.080941e-53	-8.615850e-47
Msa0253700	Msa1256340	0.807950	3.935625e-50	-8.615850e-47
Msa0255090	Msa1256340	0.800569	1.355575e-48	-8.615850e-47
Msa0259380	Msa1256340	0.804566	2.031491e-49	-8.615850e-47
Msa0264870	Msa1256340	0.818418	1.980230e-52	-8.615850e-47
Msa0292400	Msa1256340	0.843962	1.014850e-58	-8.615850e-47
Msa1173330	Msa1256340	0.821601	3.701323e-53	-8.615850e-47
Msa1196100	Msa1256340	0.879210	1.500208e-69	-8.615850e-47
Msa1200370	Msa1256340	0.811211	7.841157e-51	-8.615850e-47
Msa1201650	Msa1256340	0.800069	1.713070e-48	-8.615850e-47
Msa0527860	Msa1256340	0.805275	1.444240e-49	-8.615850e-47
Msa0576690	Msa1256340	0.806633	7.482991e-50	-8.615850e-47
Msa0867480	Msa1256340	0.805002	1.647033e-49	-8.615850e-47
Msa0909230	Msa1256340	0.803560	3.289430e-49	-8.615850e-47
Msa0945110	Msa1256340	0.801275	9.722923e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1256340	MtrunA17_Chr4g0053381	98.270	289	5	0	1	289	71	359	0.0	587
Msa1256340	MtrunA17_Chr1g0208231	56.940	281	115	3	7	285	102	378	9.93e-112	328
Msa1256340	MtrunA17_Chr3g0134261	59.023	266	104	4	8	270	81	344	9.21e-103	303
Msa1256340	MtrunA17_Chr4g0041721	41.146	192	109	3	11	201	91	279	1.70e-47	162
Msa1256340	MtrunA17_Chr3g0133211	44.022	184	102	1	6	188	90	273	8.10e-47	160
Msa1256340	MtrunA17_Chr5g0414271	41.346	208	109	4	9	210	74	274	9.17e-40	141
Msa1256340	MtrunA17_Chr5g0412471	36.017	236	136	6	6	238	85	308	1.66e-39	141
Msa1256340	MtrunA17_Chr8g0364521	37.321	209	118	3	11	213	93	294	8.80e-36	131
Msa1256340	MtrunA17_Chr5g0427191	31.734	271	170	9	5	268	80	342	3.00e-32	122
Msa1256340	MtrunA17_Chr8g0367661	34.599	237	134	8	12	239	108	332	1.39e-30	117
Msa1256340	MtrunA17_Chr5g0401271	36.585	164	95	3	8	169	99	255	3.77e-29	113
Msa1256340	MtrunA17_Chr2g0323361	27.863	262	171	7	12	266	51	301	2.68e-27	107
Msa1256340	MtrunA17_Chr3g0134781	40.310	129	76	1	3	131	58	185	5.76e-27	107
Msa1256340	MtrunA17_Chr2g0280941	30.526	190	115	5	6	186	35	216	4.08e-24	98.2
Msa1256340	MtrunA17_Chr4g0054011	32.227	211	120	8	8	205	64	264	6.56e-14	70.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1256340	AT5G67260.1	53.925	293	117	5	3	289	87	367	8.77e-105	310
Msa1256340	AT5G67260.2	53.710	283	113	5	3	279	87	357	2.21e-99	297
Msa1256340	AT3G50070.1	54.737	285	113	5	12	289	86	361	5.71e-94	282
Msa1256340	AT4G34160.1	57.273	220	93	1	5	224	80	298	1.12e-87	266
Msa1256340	AT2G22490.1	39.841	251	133	9	3	243	87	329	1.70e-45	157
Msa1256340	AT2G22490.2	37.891	256	132	9	3	243	87	330	5.59e-44	153
Msa1256340	AT1G70210.1	39.706	204	116	3	11	210	81	281	2.71e-39	140
Msa1256340	AT5G65420.4	42.857	175	94	2	5	176	71	242	4.94e-39	138
Msa1256340	AT5G65420.1	42.857	175	94	2	5	176	71	242	1.06e-38	138
Msa1256340	AT5G65420.2	50.407	123	61	0	5	127	71	193	4.39e-38	135
Msa1256340	AT5G65420.3	40.541	185	94	3	5	176	71	252	7.16e-36	131
Msa1256340	AT5G10440.2	39.752	161	95	2	5	163	61	221	1.20e-33	122
Msa1256340	AT5G10440.1	41.317	167	90	3	12	174	69	231	1.97e-33	124
Msa1256340	AT4G37630.3	37.815	119	71	2	12	128	72	189	1.86e-21	91.7
Msa1256340	AT4G37630.2	37.607	117	72	1	12	128	72	187	2.24e-21	91.3
Msa1256340	AT4G37630.1	37.815	119	71	2	12	128	72	189	5.38e-21	91.3
Msa1256340	AT4G03270.1	29.885	174	116	4	33	203	78	248	1.64e-18	84.0
Msa1256340	AT5G02110.1	28.968	252	151	8	1	242	67	300	1.64e-17	81.6
Msa1256340	AT4G03270.2	29.885	174	115	5	33	203	78	247	8.33e-17	79.3
Msa1256340	AT5G02110.2	35.965	114	70	2	55	168	92	202	1.47e-11	64.3

Find 67 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTCATCCACTTTGTTGTTTA+AGG	0.045934	8_2:+56215159	Msa1256340:three_prime_UTR
CAGATACACGCTTACGTTTC+TGG	0.149955	8_2:-56214761	None:intergenic
ATGTACTCAGTTGCATTAAA+TGG	0.206291	8_2:-56214550	None:intergenic
AACCCATGTGCCACTTCTTT+TGG	0.207318	8_2:+56213970	Msa1256340:CDS
TCTAGAGTTTGTGCTCATTA+TGG	0.211445	8_2:+56213809	Msa1256340:CDS
CTAGAGTTTGTGCTCATTAT+GGG	0.225299	8_2:+56213810	Msa1256340:CDS
TAACTAGAACATAATGTAAT+TGG	0.246056	8_2:-56215075	None:intergenic
TCCATTCATCTTCAAATGTT+TGG	0.288440	8_2:-56215114	None:intergenic
AGCTCTCTTTCACATAATTC+TGG	0.291480	8_2:+56215025	Msa1256340:three_prime_UTR
TATACAAAGAATGGAGCTTT+TGG	0.337064	8_2:+56214171	Msa1256340:CDS
ATGTGTTCAAAGAATGAAAT+TGG	0.377203	8_2:-56214232	None:intergenic
CACTGTTGTTGTCAGATTCA+AGG	0.379599	8_2:+56214458	Msa1256340:intron
TGAGTACATTGAACAACTCT+TGG	0.400069	8_2:+56214564	Msa1256340:CDS
GTTCTTCTTCATGTCATTGT+TGG	0.405061	8_2:+56214316	Msa1256340:CDS
TTTGTTGTTTAAGGTGGTGC+AGG	0.405236	8_2:+56215168	Msa1256340:three_prime_UTR
ATGATAGCTCAAACGATTCA+TGG	0.409244	8_2:+56214826	Msa1256340:CDS
AAGTTATTAGTTTGCGATGA+TGG	0.410389	8_2:+56214723	Msa1256340:CDS
TGGTGTTATCTACATTGAAA+TGG	0.411519	8_2:+56214191	Msa1256340:CDS
TTCTGGTGGCTGTTATGTTA+TGG	0.413700	8_2:+56215042	Msa1256340:three_prime_UTR
TTTGAAGAGCCGTTTGCATT+GGG	0.428112	8_2:+56214270	Msa1256340:CDS
GTTCAATCTCTTTAATTACA+TGG	0.432813	8_2:-56214528	None:intergenic
GCCAAACATTTGAAGATGAA+TGG	0.435014	8_2:+56215113	Msa1256340:three_prime_UTR
GTTTGAAGAGCCGTTTGCAT+TGG	0.436083	8_2:+56214269	Msa1256340:CDS
GTAGCAGCAGCCAATGTAGA+AGG	0.443163	8_2:-56214499	None:intergenic
CCAGCAGATGCGATTGCCTT+CGG	0.448229	8_2:+56214911	Msa1256340:CDS
GAGTTATCTTCCTTCTACAT+TGG	0.453122	8_2:+56214489	Msa1256340:CDS
TTGAATGAGTCTCGTGTTGA+AGG	0.454018	8_2:+56213773	Msa1256340:CDS
CTCGTGTTGAAGGTGTGAAT+TGG	0.455681	8_2:+56213783	Msa1256340:CDS
AGCTAAAACTATACAAAGAA+TGG	0.456932	8_2:+56214162	Msa1256340:CDS
ATGACACCACCCGGACTACT+TGG	0.457496	8_2:-56214786	None:intergenic
TACTAGTTTGAAGTTTCAAA+AGG	0.459874	8_2:+56213883	Msa1256340:CDS
GTTTGCATTGGGAGTTTATG+TGG	0.461092	8_2:+56214281	Msa1256340:CDS
TGTATCTGAACCAAGTAGTC+CGG	0.467449	8_2:+56214776	Msa1256340:CDS
GAGTACATTGAACAACTCTT+GGG	0.474105	8_2:+56214565	Msa1256340:CDS
AAGAATGAAATTGGTGTCAC+TGG	0.474814	8_2:-56214223	None:intergenic
ACTGTTGTTGTCAGATTCAA+GGG	0.488226	8_2:+56214459	Msa1256340:intron
ATCCACTTTGTTGTTTAAGG+TGG	0.489760	8_2:+56215162	Msa1256340:three_prime_UTR
ACATAAACTCCCAATGCAAA+CGG	0.499623	8_2:-56214279	None:intergenic
AGTTTCAAAAGGATAAGCCT+TGG	0.509680	8_2:+56213894	Msa1256340:CDS
TTCATGGACTGCGGCATCGT+CGG	0.514106	8_2:+56214842	Msa1256340:CDS
CCGAAGGCAATCGCATCTGC+TGG	0.515805	8_2:-56214911	None:intergenic
GTTTATGTGGCGTTGTGAGA+AGG	0.526725	8_2:+56214294	Msa1256340:CDS
TTGTTGTTTAAGGTGGTGCA+GGG	0.533062	8_2:+56215169	Msa1256340:three_prime_UTR
GAACACATTGTTAGAAGACT+TGG	0.535174	8_2:+56214247	Msa1256340:CDS
CACTGCAGCCGATGTTCAAG+AGG	0.536747	8_2:+56214874	Msa1256340:CDS
TTAAACAACAAAGTGGATGA+AGG	0.543730	8_2:-56215157	None:intergenic
TGTTGCTTGTTTGTCTCTTG+CGG	0.549218	8_2:+56213934	Msa1256340:CDS
TCTCTTTCACATAATTCTGG+TGG	0.561716	8_2:+56215028	Msa1256340:three_prime_UTR
GTATCTGAACCAAGTAGTCC+GGG	0.572550	8_2:+56214777	Msa1256340:CDS
GCTCTGCTCCTCTTGAACAT+CGG	0.583132	8_2:-56214882	None:intergenic
ACTTGAAAATCCAAAAGAAG+TGG	0.586683	8_2:-56213980	None:intergenic
AATCCAAAAGAAGTGGCACA+TGG	0.596075	8_2:-56213973	None:intergenic
ATTTGAAGATGAATGGAATG+AGG	0.596504	8_2:+56215120	Msa1256340:three_prime_UTR
CACCACCTTAAACAACAAAG+TGG	0.597864	8_2:-56215164	None:intergenic
ATCCAAAAGAAGTGGCACAT+GGG	0.625549	8_2:-56213972	None:intergenic
AGATGAATGGAATGAGGCAG+AGG	0.625896	8_2:+56215126	Msa1256340:three_prime_UTR
GGGTTTACTAAAGATTAGTG+AGG	0.633483	8_2:+56214585	Msa1256340:CDS
GCAGATGATAGATAACTCAC+AGG	0.633722	8_2:-56215236	None:intergenic
GCAGTAAGCTGAGTCATCCA+AGG	0.637891	8_2:-56213911	None:intergenic
ATCATCATCATTAATTAACG+AGG	0.639316	8_2:-56214966	None:intergenic
TCATCATCATTAATTAACGA+GGG	0.645108	8_2:-56214965	None:intergenic
CTCAAACGATTCATGGACTG+CGG	0.650945	8_2:+56214833	Msa1256340:CDS
TGTTATCTACATTGAAATGG+AGG	0.653096	8_2:+56214194	Msa1256340:CDS
GATGCATCAATGACACCACC+CGG	0.655887	8_2:-56214795	None:intergenic
ATAGACACACGATTAACCGA+AGG	0.692739	8_2:-56214927	None:intergenic
GTAGTTGACAGCAAGAACAG+TGG	0.728516	8_2:-56213846	None:intergenic
TCTGAACCAAGTAGTCCGGG+TGG	0.733116	8_2:+56214780	Msa1256340:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTTTTTATGTTTTTTTGTT+AGG	+	chr8_2:56214114-56214133	Msa1256340:intron	10.0%
!!!	TTTTTTTATGTTTTTTTGTT+AGG	+	chr8_2:56214114-56214133	Msa1256340:intron	10.0%
!!	CATCAAAAAACAAAACTTTA+TGG	-	chr8_2:56214041-56214060	None:intergenic	20.0%
!!!	TTTTTGATGTTTTAAGTTGA+TGG	+	chr8_2:56214052-56214071	Msa1256340:intron	20.0%
!!!	TTTTGATGTTTTAAGTTGAT+GGG	+	chr8_2:56214053-56214072	Msa1256340:intron	20.0%
!!!	TAGTATTTTTACTTCAAATG+TGG	+	chr8_2:56215001-56215020	Msa1256340:three_prime_UTR	20.0%
!!	TAACTAGAACATAATGTAAT+TGG	-	chr8_2:56215078-56215097	None:intergenic	20.0%
!!	CATCAAAAAACAAAACTTTA+TGG	-	chr8_2:56214041-56214060	None:intergenic	20.0%
!!!	TTTTTGATGTTTTAAGTTGA+TGG	+	chr8_2:56214052-56214071	Msa1256340:intron	20.0%
!!!	TTTTGATGTTTTAAGTTGAT+GGG	+	chr8_2:56214053-56214072	Msa1256340:intron	20.0%
!!!	TAGTATTTTTACTTCAAATG+TGG	+	chr8_2:56215001-56215020	Msa1256340:three_prime_UTR	20.0%
!!	TAACTAGAACATAATGTAAT+TGG	-	chr8_2:56215078-56215097	None:intergenic	20.0%
!!	TACTAGTTTGAAGTTTCAAA+AGG	+	chr8_2:56213883-56213902	Msa1256340:CDS	25.0%
!!!	TATGTTTTTTTGTTAGGTTG+AGG	+	chr8_2:56214120-56214139	Msa1256340:intron	25.0%
!	AGCTAAAACTATACAAAGAA+TGG	+	chr8_2:56214162-56214181	Msa1256340:CDS	25.0%
!	ATGTGTTCAAAGAATGAAAT+TGG	-	chr8_2:56214235-56214254	None:intergenic	25.0%
!	TAATAAATATGATACTGTGC+TGG	+	chr8_2:56214369-56214388	Msa1256340:intron	25.0%
!!!	ATAAGTACCATTAGTCTTAA+TGG	-	chr8_2:56214425-56214444	None:intergenic	25.0%
!	GTTCAATCTCTTTAATTACA+TGG	-	chr8_2:56214531-56214550	None:intergenic	25.0%
!	TCATCATCATTAATTAACGA+GGG	-	chr8_2:56214968-56214987	None:intergenic	25.0%
!	ATCATCATCATTAATTAACG+AGG	-	chr8_2:56214969-56214988	None:intergenic	25.0%
!	TGATAAGCAAAAATAATCTC+AGG	-	chr8_2:56215301-56215320	None:intergenic	25.0%
!!	TACTAGTTTGAAGTTTCAAA+AGG	+	chr8_2:56213883-56213902	Msa1256340:CDS	25.0%
!!!	TATGTTTTTTTGTTAGGTTG+AGG	+	chr8_2:56214120-56214139	Msa1256340:intron	25.0%
!	AGCTAAAACTATACAAAGAA+TGG	+	chr8_2:56214162-56214181	Msa1256340:CDS	25.0%
!	ATGTGTTCAAAGAATGAAAT+TGG	-	chr8_2:56214235-56214254	None:intergenic	25.0%
!	TAATAAATATGATACTGTGC+TGG	+	chr8_2:56214369-56214388	Msa1256340:intron	25.0%
!!!	ATAAGTACCATTAGTCTTAA+TGG	-	chr8_2:56214425-56214444	None:intergenic	25.0%
!	GTTCAATCTCTTTAATTACA+TGG	-	chr8_2:56214531-56214550	None:intergenic	25.0%
!	TCATCATCATTAATTAACGA+GGG	-	chr8_2:56214968-56214987	None:intergenic	25.0%
!	ATCATCATCATTAATTAACG+AGG	-	chr8_2:56214969-56214988	None:intergenic	25.0%
!	TGATAAGCAAAAATAATCTC+AGG	-	chr8_2:56215301-56215320	None:intergenic	25.0%
	ACTTGAAAATCCAAAAGAAG+TGG	-	chr8_2:56213983-56214002	None:intergenic	30.0%
!	TATACAAAGAATGGAGCTTT+TGG	+	chr8_2:56214171-56214190	Msa1256340:CDS	30.0%
!!	TGGTGTTATCTACATTGAAA+TGG	+	chr8_2:56214191-56214210	Msa1256340:CDS	30.0%
	TGTTATCTACATTGAAATGG+AGG	+	chr8_2:56214194-56214213	Msa1256340:CDS	30.0%
	ATGTACTCAGTTGCATTAAA+TGG	-	chr8_2:56214553-56214572	None:intergenic	30.0%
!	GAATTTTCCAAATCTGATGT+TGG	+	chr8_2:56214659-56214678	Msa1256340:intron	30.0%
	TGTAAAACCAACATCAGATT+TGG	-	chr8_2:56214669-56214688	None:intergenic	30.0%
!!!	AAATCTGATGTTGGTTTTAC+AGG	+	chr8_2:56214668-56214687	Msa1256340:intron	30.0%
!!	AAGTTATTAGTTTGCGATGA+TGG	+	chr8_2:56214723-56214742	Msa1256340:CDS	30.0%
	TCCATTCATCTTCAAATGTT+TGG	-	chr8_2:56215117-56215136	None:intergenic	30.0%
	ATTTGAAGATGAATGGAATG+AGG	+	chr8_2:56215120-56215139	Msa1256340:three_prime_UTR	30.0%
	TTAAACAACAAAGTGGATGA+AGG	-	chr8_2:56215160-56215179	None:intergenic	30.0%
!!	TTCATCCACTTTGTTGTTTA+AGG	+	chr8_2:56215159-56215178	Msa1256340:three_prime_UTR	30.0%
	AAAAATTGAACAGCAGAGAT+TGG	-	chr8_2:56215337-56215356	None:intergenic	30.0%
!!!	ATCTCTGCTGTTCAATTTTT+TGG	+	chr8_2:56215337-56215356	Msa1256340:three_prime_UTR	30.0%
	ACTTGAAAATCCAAAAGAAG+TGG	-	chr8_2:56213983-56214002	None:intergenic	30.0%
!	TATACAAAGAATGGAGCTTT+TGG	+	chr8_2:56214171-56214190	Msa1256340:CDS	30.0%
!!	TGGTGTTATCTACATTGAAA+TGG	+	chr8_2:56214191-56214210	Msa1256340:CDS	30.0%
	TGTTATCTACATTGAAATGG+AGG	+	chr8_2:56214194-56214213	Msa1256340:CDS	30.0%
	ATGTACTCAGTTGCATTAAA+TGG	-	chr8_2:56214553-56214572	None:intergenic	30.0%
!	GAATTTTCCAAATCTGATGT+TGG	+	chr8_2:56214659-56214678	Msa1256340:intron	30.0%
	TGTAAAACCAACATCAGATT+TGG	-	chr8_2:56214669-56214688	None:intergenic	30.0%
!!!	AAATCTGATGTTGGTTTTAC+AGG	+	chr8_2:56214668-56214687	Msa1256340:intron	30.0%
!!	AAGTTATTAGTTTGCGATGA+TGG	+	chr8_2:56214723-56214742	Msa1256340:CDS	30.0%
	TCCATTCATCTTCAAATGTT+TGG	-	chr8_2:56215117-56215136	None:intergenic	30.0%
	ATTTGAAGATGAATGGAATG+AGG	+	chr8_2:56215120-56215139	Msa1256340:three_prime_UTR	30.0%
	TTAAACAACAAAGTGGATGA+AGG	-	chr8_2:56215160-56215179	None:intergenic	30.0%
!!	TTCATCCACTTTGTTGTTTA+AGG	+	chr8_2:56215159-56215178	Msa1256340:three_prime_UTR	30.0%
	AAAAATTGAACAGCAGAGAT+TGG	-	chr8_2:56215337-56215356	None:intergenic	30.0%
!!!	ATCTCTGCTGTTCAATTTTT+TGG	+	chr8_2:56215337-56215356	Msa1256340:three_prime_UTR	30.0%
!	TCTAGAGTTTGTGCTCATTA+TGG	+	chr8_2:56213809-56213828	Msa1256340:CDS	35.0%
	CTAGAGTTTGTGCTCATTAT+GGG	+	chr8_2:56213810-56213829	Msa1256340:CDS	35.0%
	AGTTTCAAAAGGATAAGCCT+TGG	+	chr8_2:56213894-56213913	Msa1256340:CDS	35.0%
!!	AAGAATGAAATTGGTGTCAC+TGG	-	chr8_2:56214226-56214245	None:intergenic	35.0%
	GAACACATTGTTAGAAGACT+TGG	+	chr8_2:56214247-56214266	Msa1256340:CDS	35.0%
	ACATAAACTCCCAATGCAAA+CGG	-	chr8_2:56214282-56214301	None:intergenic	35.0%
	GTTCTTCTTCATGTCATTGT+TGG	+	chr8_2:56214316-56214335	Msa1256340:CDS	35.0%
	AGACATGCCATTAAGACTAA+TGG	+	chr8_2:56214415-56214434	Msa1256340:intron	35.0%
	ACTGTTGTTGTCAGATTCAA+GGG	+	chr8_2:56214459-56214478	Msa1256340:intron	35.0%
	GAGTTATCTTCCTTCTACAT+TGG	+	chr8_2:56214489-56214508	Msa1256340:CDS	35.0%
	TGAGTACATTGAACAACTCT+TGG	+	chr8_2:56214564-56214583	Msa1256340:CDS	35.0%
	GAGTACATTGAACAACTCTT+GGG	+	chr8_2:56214565-56214584	Msa1256340:CDS	35.0%
	GGGTTTACTAAAGATTAGTG+AGG	+	chr8_2:56214585-56214604	Msa1256340:CDS	35.0%
	ATGATAGCTCAAACGATTCA+TGG	+	chr8_2:56214826-56214845	Msa1256340:CDS	35.0%
	AGCTCTCTTTCACATAATTC+TGG	+	chr8_2:56215025-56215044	Msa1256340:three_prime_UTR	35.0%
	TCTCTTTCACATAATTCTGG+TGG	+	chr8_2:56215028-56215047	Msa1256340:three_prime_UTR	35.0%
	GCCAAACATTTGAAGATGAA+TGG	+	chr8_2:56215113-56215132	Msa1256340:three_prime_UTR	35.0%
!!	ATCCACTTTGTTGTTTAAGG+TGG	+	chr8_2:56215162-56215181	Msa1256340:three_prime_UTR	35.0%
!	TCTAGAGTTTGTGCTCATTA+TGG	+	chr8_2:56213809-56213828	Msa1256340:CDS	35.0%
	CTAGAGTTTGTGCTCATTAT+GGG	+	chr8_2:56213810-56213829	Msa1256340:CDS	35.0%
	AGTTTCAAAAGGATAAGCCT+TGG	+	chr8_2:56213894-56213913	Msa1256340:CDS	35.0%
!!	AAGAATGAAATTGGTGTCAC+TGG	-	chr8_2:56214226-56214245	None:intergenic	35.0%
	GAACACATTGTTAGAAGACT+TGG	+	chr8_2:56214247-56214266	Msa1256340:CDS	35.0%
	ACATAAACTCCCAATGCAAA+CGG	-	chr8_2:56214282-56214301	None:intergenic	35.0%
	GTTCTTCTTCATGTCATTGT+TGG	+	chr8_2:56214316-56214335	Msa1256340:CDS	35.0%
	AGACATGCCATTAAGACTAA+TGG	+	chr8_2:56214415-56214434	Msa1256340:intron	35.0%
	ACTGTTGTTGTCAGATTCAA+GGG	+	chr8_2:56214459-56214478	Msa1256340:intron	35.0%
	GAGTTATCTTCCTTCTACAT+TGG	+	chr8_2:56214489-56214508	Msa1256340:CDS	35.0%
	TGAGTACATTGAACAACTCT+TGG	+	chr8_2:56214564-56214583	Msa1256340:CDS	35.0%
	GAGTACATTGAACAACTCTT+GGG	+	chr8_2:56214565-56214584	Msa1256340:CDS	35.0%
	GGGTTTACTAAAGATTAGTG+AGG	+	chr8_2:56214585-56214604	Msa1256340:CDS	35.0%
	ATGATAGCTCAAACGATTCA+TGG	+	chr8_2:56214826-56214845	Msa1256340:CDS	35.0%
	AGCTCTCTTTCACATAATTC+TGG	+	chr8_2:56215025-56215044	Msa1256340:three_prime_UTR	35.0%
	TCTCTTTCACATAATTCTGG+TGG	+	chr8_2:56215028-56215047	Msa1256340:three_prime_UTR	35.0%
	GCCAAACATTTGAAGATGAA+TGG	+	chr8_2:56215113-56215132	Msa1256340:three_prime_UTR	35.0%
!!	ATCCACTTTGTTGTTTAAGG+TGG	+	chr8_2:56215162-56215181	Msa1256340:three_prime_UTR	35.0%
	TTGAATGAGTCTCGTGTTGA+AGG	+	chr8_2:56213773-56213792	Msa1256340:CDS	40.0%
!	TGTTGCTTGTTTGTCTCTTG+CGG	+	chr8_2:56213934-56213953	Msa1256340:CDS	40.0%
	ATCCAAAAGAAGTGGCACAT+GGG	-	chr8_2:56213975-56213994	None:intergenic	40.0%
	AATCCAAAAGAAGTGGCACA+TGG	-	chr8_2:56213976-56213995	None:intergenic	40.0%
	TTTGAAGAGCCGTTTGCATT+GGG	+	chr8_2:56214270-56214289	Msa1256340:CDS	40.0%
	GTTTGCATTGGGAGTTTATG+TGG	+	chr8_2:56214281-56214300	Msa1256340:CDS	40.0%
	CACTGTTGTTGTCAGATTCA+AGG	+	chr8_2:56214458-56214477	Msa1256340:intron	40.0%
	TGTATCTGAACCAAGTAGTC+CGG	+	chr8_2:56214776-56214795	Msa1256340:CDS	40.0%
	ATAGACACACGATTAACCGA+AGG	-	chr8_2:56214930-56214949	None:intergenic	40.0%
	TTCTGGTGGCTGTTATGTTA+TGG	+	chr8_2:56215042-56215061	Msa1256340:three_prime_UTR	40.0%
	CACCACCTTAAACAACAAAG+TGG	-	chr8_2:56215167-56215186	None:intergenic	40.0%
!!	TTTGTTGTTTAAGGTGGTGC+AGG	+	chr8_2:56215168-56215187	Msa1256340:three_prime_UTR	40.0%
!!	TTGTTGTTTAAGGTGGTGCA+GGG	+	chr8_2:56215169-56215188	Msa1256340:three_prime_UTR	40.0%
	GCAGATGATAGATAACTCAC+AGG	-	chr8_2:56215239-56215258	None:intergenic	40.0%
	TTGAATGAGTCTCGTGTTGA+AGG	+	chr8_2:56213773-56213792	Msa1256340:CDS	40.0%
!	TGTTGCTTGTTTGTCTCTTG+CGG	+	chr8_2:56213934-56213953	Msa1256340:CDS	40.0%
	ATCCAAAAGAAGTGGCACAT+GGG	-	chr8_2:56213975-56213994	None:intergenic	40.0%
	AATCCAAAAGAAGTGGCACA+TGG	-	chr8_2:56213976-56213995	None:intergenic	40.0%
	TTTGAAGAGCCGTTTGCATT+GGG	+	chr8_2:56214270-56214289	Msa1256340:CDS	40.0%
	GTTTGCATTGGGAGTTTATG+TGG	+	chr8_2:56214281-56214300	Msa1256340:CDS	40.0%
	CACTGTTGTTGTCAGATTCA+AGG	+	chr8_2:56214458-56214477	Msa1256340:intron	40.0%
	TGTATCTGAACCAAGTAGTC+CGG	+	chr8_2:56214776-56214795	Msa1256340:CDS	40.0%
	ATAGACACACGATTAACCGA+AGG	-	chr8_2:56214930-56214949	None:intergenic	40.0%
	TTCTGGTGGCTGTTATGTTA+TGG	+	chr8_2:56215042-56215061	Msa1256340:three_prime_UTR	40.0%
	CACCACCTTAAACAACAAAG+TGG	-	chr8_2:56215167-56215186	None:intergenic	40.0%
!!	TTTGTTGTTTAAGGTGGTGC+AGG	+	chr8_2:56215168-56215187	Msa1256340:three_prime_UTR	40.0%
!!	TTGTTGTTTAAGGTGGTGCA+GGG	+	chr8_2:56215169-56215188	Msa1256340:three_prime_UTR	40.0%
	GCAGATGATAGATAACTCAC+AGG	-	chr8_2:56215239-56215258	None:intergenic	40.0%
!	CTCGTGTTGAAGGTGTGAAT+TGG	+	chr8_2:56213783-56213802	Msa1256340:CDS	45.0%
	GTAGTTGACAGCAAGAACAG+TGG	-	chr8_2:56213849-56213868	None:intergenic	45.0%
!!!	AACCCATGTGCCACTTCTTT+TGG	+	chr8_2:56213970-56213989	Msa1256340:CDS	45.0%
	GTTTGAAGAGCCGTTTGCAT+TGG	+	chr8_2:56214269-56214288	Msa1256340:CDS	45.0%
	GTTTATGTGGCGTTGTGAGA+AGG	+	chr8_2:56214294-56214313	Msa1256340:CDS	45.0%
	CAGATACACGCTTACGTTTC+TGG	-	chr8_2:56214764-56214783	None:intergenic	45.0%
	GTATCTGAACCAAGTAGTCC+GGG	+	chr8_2:56214777-56214796	Msa1256340:CDS	45.0%
!	CTCAAACGATTCATGGACTG+CGG	+	chr8_2:56214833-56214852	Msa1256340:CDS	45.0%
	AGATGAATGGAATGAGGCAG+AGG	+	chr8_2:56215126-56215145	Msa1256340:three_prime_UTR	45.0%
!	CTCGTGTTGAAGGTGTGAAT+TGG	+	chr8_2:56213783-56213802	Msa1256340:CDS	45.0%
	GTAGTTGACAGCAAGAACAG+TGG	-	chr8_2:56213849-56213868	None:intergenic	45.0%
!!!	AACCCATGTGCCACTTCTTT+TGG	+	chr8_2:56213970-56213989	Msa1256340:CDS	45.0%
	GTTTGAAGAGCCGTTTGCAT+TGG	+	chr8_2:56214269-56214288	Msa1256340:CDS	45.0%
	GTTTATGTGGCGTTGTGAGA+AGG	+	chr8_2:56214294-56214313	Msa1256340:CDS	45.0%
	CAGATACACGCTTACGTTTC+TGG	-	chr8_2:56214764-56214783	None:intergenic	45.0%
	GTATCTGAACCAAGTAGTCC+GGG	+	chr8_2:56214777-56214796	Msa1256340:CDS	45.0%
!	CTCAAACGATTCATGGACTG+CGG	+	chr8_2:56214833-56214852	Msa1256340:CDS	45.0%
	AGATGAATGGAATGAGGCAG+AGG	+	chr8_2:56215126-56215145	Msa1256340:three_prime_UTR	45.0%
	GCAGTAAGCTGAGTCATCCA+AGG	-	chr8_2:56213914-56213933	None:intergenic	50.0%
	GTAGCAGCAGCCAATGTAGA+AGG	-	chr8_2:56214502-56214521	None:intergenic	50.0%
	GATGCATCAATGACACCACC+CGG	-	chr8_2:56214798-56214817	None:intergenic	50.0%
	GCTCTGCTCCTCTTGAACAT+CGG	-	chr8_2:56214885-56214904	None:intergenic	50.0%
	GCAGTAAGCTGAGTCATCCA+AGG	-	chr8_2:56213914-56213933	None:intergenic	50.0%
	GTAGCAGCAGCCAATGTAGA+AGG	-	chr8_2:56214502-56214521	None:intergenic	50.0%
	GATGCATCAATGACACCACC+CGG	-	chr8_2:56214798-56214817	None:intergenic	50.0%
	GCTCTGCTCCTCTTGAACAT+CGG	-	chr8_2:56214885-56214904	None:intergenic	50.0%
	TCTGAACCAAGTAGTCCGGG+TGG	+	chr8_2:56214780-56214799	Msa1256340:CDS	55.0%
	ATGACACCACCCGGACTACT+TGG	-	chr8_2:56214789-56214808	None:intergenic	55.0%
!	TTCATGGACTGCGGCATCGT+CGG	+	chr8_2:56214842-56214861	Msa1256340:CDS	55.0%
	CACTGCAGCCGATGTTCAAG+AGG	+	chr8_2:56214874-56214893	Msa1256340:CDS	55.0%
	CCAGCAGATGCGATTGCCTT+CGG	+	chr8_2:56214911-56214930	Msa1256340:CDS	55.0%
	TCTGAACCAAGTAGTCCGGG+TGG	+	chr8_2:56214780-56214799	Msa1256340:CDS	55.0%
	ATGACACCACCCGGACTACT+TGG	-	chr8_2:56214789-56214808	None:intergenic	55.0%
!	TTCATGGACTGCGGCATCGT+CGG	+	chr8_2:56214842-56214861	Msa1256340:CDS	55.0%
	CACTGCAGCCGATGTTCAAG+AGG	+	chr8_2:56214874-56214893	Msa1256340:CDS	55.0%
	CCAGCAGATGCGATTGCCTT+CGG	+	chr8_2:56214911-56214930	Msa1256340:CDS	55.0%
	CCGAAGGCAATCGCATCTGC+TGG	-	chr8_2:56214914-56214933	None:intergenic	60.0%
	CCGAAGGCAATCGCATCTGC+TGG	-	chr8_2:56214914-56214933	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	56213752	56215385	56213752	ID=Msa1256340;Name=Msa1256340
chr8_2	mRNA	56213752	56215385	56213752	ID=Msa1256340-mRNA-1;Parent=Msa1256340;Name=Msa1256340-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0\|1\|1\|1\|1\|1\|4\|411\|289
chr8_2	exon	56213752	56214000	56213752	ID=Msa1256340-mRNA-1:exon:17356;Parent=Msa1256340-mRNA-1
chr8_2	exon	56214136	56214337	56214136	ID=Msa1256340-mRNA-1:exon:17357;Parent=Msa1256340-mRNA-1
chr8_2	exon	56214473	56214606	56214473	ID=Msa1256340-mRNA-1:exon:17358;Parent=Msa1256340-mRNA-1
chr8_2	exon	56214690	56215385	56214690	ID=Msa1256340-mRNA-1:exon:17359;Parent=Msa1256340-mRNA-1
chr8_2	CDS	56213752	56214000	56213752	ID=Msa1256340-mRNA-1:cds;Parent=Msa1256340-mRNA-1
chr8_2	CDS	56214136	56214337	56214136	ID=Msa1256340-mRNA-1:cds;Parent=Msa1256340-mRNA-1
chr8_2	CDS	56214473	56214606	56214473	ID=Msa1256340-mRNA-1:cds;Parent=Msa1256340-mRNA-1
chr8_2	CDS	56214690	56214974	56214690	ID=Msa1256340-mRNA-1:cds;Parent=Msa1256340-mRNA-1
chr8_2	three_prime_UTR	56214975	56215385	56214975	ID=Msa1256340-mRNA-1:three_prime_utr;Parent=Msa1256340-mRNA-1

Gene Sequence

>Msa1256340

GATTTTGTTATTGATGGATCTTTGAATGAGTCTCGTGTTGAAGGTGTGAATTGGCTTTCTAGAGTTTGTGCTCATTATGGGTTTTCTACTTTGACCACTGTTCTTGCTGTCAACTACTTTGATAGATTCGTTACTAGTTTGAAGTTTCAAAAGGATAAGCCTTGGATGACTCAGCTTACTGCTGTTGCTTGTTTGTCTCTTGCGGCTAAAATTGAAGAAACCCATGTGCCACTTCTTTTGGATTTTCAAGTTGAGGAATCTAGATTTGTGTTTGAAGCTAAAACTATACAAAGAATGGAGCTTTTGGTGTTATCTACATTGAAATGGAGGATGCATCCAGTGACACCAATTTCATTCTTTGAACACATTGTTAGAAGACTTGGTTTGAAGAGCCGTTTGCATTGGGAGTTTATGTGGCGTTGTGAGAAGGTTCTTCTTCATGTCATTGTTGATTCAAGGGTTATGATGAGTTATCTTCCTTCTACATTGGCTGCTGCTACAATGATCCATGTAATTAAAGAGATTGAACCATTTAATGCAACTGAGTACATTGAACAACTCTTGGGTTTACTAAAGATTAGTGAGGAACAAGTGAATCAGTGTTACAAACTTATGCTGAAGTTATTAGTTTGCGATGATGGTATTTACAGTCTTCACCAGAAACGTAAGCGTGTATCTGAACCAAGTAGTCCGGGTGGTGTCATTGATGCATCTTTCAGTTATGATAGCTCAAACGATTCATGGACTGCGGCATCGTCGGTTTCGCTTTCACTGCAGCCGATGTTCAAGAGGAGCAGAGCTCAAGACCAGCAGATGCGATTGCCTTCGGTTAATCGTGTGTCTATTGATGTTCTTCATAGCCCTCGTTAA

Protein sequence

>Msa1256340

DFVIDGSLNESRVEGVNWLSRVCAHYGFSTLTTVLAVNYFDRFVTSLKFQKDKPWMTQLTAVACLSLAAKIEETHVPLLLDFQVEESRFVFEAKTIQRMELLVLSTLKWRMHPVTPISFFEHIVRRLGLKSRLHWEFMWRCEKVLLHVIVDSRVMMSYLPSTLAAATMIHVIKEIEPFNATEYIEQLLGLLKISEEQVNQCYKLMLKLLVCDDGIYSLHQKRKRVSEPSSPGGVIDASFSYDSSNDSWTAASSVSLSLQPMFKRSRAQDQQMRLPSVNRVSIDVLHSPR*