AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0866550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0866550 MtrunA17_Chr5g0412201 97.368 114 3 0 6 119 518 631 4.99e-71 223
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0866550 AT5G65490.1 51.200 125 47 2 5 115 515 639 1.11e-31 117

Find 61 sgRNAs with CRISPR-Local

Find 655 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAATTATTACGCACAATT+TGG 0.183879 5_4:+68297079 Msa0866550:three_prime_UTR
TTTACATATATTTGAAAATA+AGG 0.199281 5_4:-68297038 None:intergenic
TATAGATGTAGCAAGTTATT+TGG 0.203676 5_4:+68296989 Msa0866550:three_prime_UTR
TTTATTTAACATCAGATTAT+TGG 0.228014 5_4:+68290217 Msa0866550:intron
CAAAATACCTCATCCTTCTT+TGG 0.244841 5_4:-68296314 None:intergenic
TCTTCCCAACAAGGGCTTCC+TGG 0.288662 5_4:+68296692 Msa0866550:CDS
CCCCATGAGCCCAAGCAAAT+TGG 0.303671 5_4:-68296723 None:intergenic
TCCAATTTGCTTGGGCTCAT+GGG 0.306927 5_4:+68296722 Msa0866550:CDS
AAGTTGATGGGTTCTCAAAT+AGG 0.311997 5_4:+68296824 Msa0866550:three_prime_UTR
ATCCAATTTGCTTGGGCTCA+TGG 0.345796 5_4:+68296721 Msa0866550:CDS
GGTCCTGCATCCAATTTGCT+TGG 0.360876 5_4:+68296713 Msa0866550:CDS
CGACTATGTGACTACCTTCC+GGG 0.363466 5_4:-68296898 None:intergenic
TGGATTGTGTATGGTAGTTT+CGG 0.368066 5_4:+68297099 Msa0866550:three_prime_UTR
TGCCCTTCTTAGCATCTTGT+GGG 0.382117 5_4:-68296754 None:intergenic
GGATATCTGCCAGGTATTGC+TGG 0.382376 5_4:+68297144 Msa0866550:three_prime_UTR
TATTTCCTTGCCTTGTTTGA+GGG 0.388639 5_4:+68296947 Msa0866550:three_prime_UTR
GTCCTGCATCCAATTTGCTT+GGG 0.390195 5_4:+68296714 Msa0866550:CDS
TTATTTCCTTGCCTTGTTTG+AGG 0.392741 5_4:+68296946 Msa0866550:three_prime_UTR
CGCACAATTTGGATTGTGTA+TGG 0.398160 5_4:+68297090 Msa0866550:three_prime_UTR
AGCAAATTGGATGCAGGACC+AGG 0.402330 5_4:-68296710 None:intergenic
ATCACATGCAGCAGAAGATA+TGG 0.402786 5_4:+68296607 Msa0866550:CDS
TGTAGCAAGTTATTTGGCCT+TGG 0.412368 5_4:+68296995 Msa0866550:three_prime_UTR
GCCGAGGTTTCTAAAGTTGA+TGG 0.412388 5_4:+68296811 Msa0866550:three_prime_UTR
CAAATATATGTAAATCAGAA+AGG 0.425196 5_4:+68297047 Msa0866550:three_prime_UTR
TTGCCCTTCTTAGCATCTTG+TGG 0.433898 5_4:-68296755 None:intergenic
CAGGACCAGGAAGCCCTTGT+TGG 0.439692 5_4:-68296697 None:intergenic
AGTTGATGGGTTCTCAAATA+GGG 0.440430 5_4:+68296825 Msa0866550:three_prime_UTR
CCAATTTGCTTGGGCTCATG+GGG 0.441223 5_4:+68296723 Msa0866550:CDS
AAGCCCTTGTTGGGAAGAAA+AGG 0.462320 5_4:-68296687 None:intergenic
GCCTTGGTAAATTTGAAAGT+AGG 0.465456 5_4:+68297011 Msa0866550:three_prime_UTR
CACATAGTCGGCTGTTAACC+AGG 0.466087 5_4:+68296911 Msa0866550:three_prime_UTR
CCGACTATGTGACTACCTTC+CGG 0.469765 5_4:-68296899 None:intergenic
TGCTATGAATGAACAACTAA+AGG 0.472625 5_4:+68296247 Msa0866550:CDS
AACTTGCTACATCTATATAT+AGG 0.473118 5_4:-68296983 None:intergenic
CCGAGGTTTCTAAAGTTGAT+GGG 0.502729 5_4:+68296812 Msa0866550:three_prime_UTR
TGGCAGATATCCCTTCTGTA+GGG 0.505538 5_4:-68297133 None:intergenic
GTTCCCACAAGATGCTAAGA+AGG 0.506352 5_4:+68296751 Msa0866550:CDS
AAATTTACATCCACATCTAC+AGG 0.506809 5_4:-68296644 None:intergenic
AGGACCAGGAAGCCCTTGTT+GGG 0.511774 5_4:-68296696 None:intergenic
AAATATATGTAAATCAGAAA+GGG 0.519006 5_4:+68297048 Msa0866550:three_prime_UTR
TAATGAACAAATTCCAAAGA+AGG 0.529858 5_4:+68296301 Msa0866550:CDS
AGCCCAAGCAAATTGGATGC+AGG 0.536777 5_4:-68296716 None:intergenic
AATGAATTAAACCCTACAGA+AGG 0.548197 5_4:+68297122 Msa0866550:three_prime_UTR
CCCATCAACTTTAGAAACCT+CGG 0.550104 5_4:-68296812 None:intergenic
CTACAGAAGGGATATCTGCC+AGG 0.554444 5_4:+68297135 Msa0866550:three_prime_UTR
CTGGCAGATATCCCTTCTGT+AGG 0.555659 5_4:-68297134 None:intergenic
AAGTAAACACCAGCAATACC+TGG 0.568234 5_4:-68297153 None:intergenic
TGTTGCAAAACCTGTTAACC+AGG 0.579593 5_4:+68296867 Msa0866550:three_prime_UTR
TCCTACTTTCAAATTTACCA+AGG 0.588246 5_4:-68297012 None:intergenic
AAATAACACTGTTCTTCACC+TGG 0.589143 5_4:-68296929 None:intergenic
ATGAATTAAACCCTACAGAA+GGG 0.603562 5_4:+68297123 Msa0866550:three_prime_UTR
ACAAATTCCAAAGAAGGATG+AGG 0.607786 5_4:+68296307 Msa0866550:CDS
TCTCAAATAGGGTAGTCTCC+AGG 0.610710 5_4:+68296836 Msa0866550:three_prime_UTR
TGCAGCAGAAGATATGGATG+AGG 0.619848 5_4:+68296613 Msa0866550:CDS
GGACTTCTCTCCTGTAGATG+TGG 0.620966 5_4:+68296634 Msa0866550:CDS
CCGGAAGGTAGTCACATAGT+CGG 0.627689 5_4:+68296899 Msa0866550:three_prime_UTR
TTCCCACAAGATGCTAAGAA+GGG 0.634871 5_4:+68296752 Msa0866550:CDS
CAATTTGCTTGGGCTCATGG+GGG 0.641197 5_4:+68296724 Msa0866550:CDS
TGAGGATAATGATGATGAAG+AGG 0.646104 5_4:+68296199 Msa0866550:CDS
GATGATTCTGACGAGAGTGA+TGG 0.675468 5_4:+68296164 Msa0866550:CDS
TGATGGCGTTGAATCTGCTG+AGG 0.715939 5_4:+68296181 Msa0866550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAATATGAATGTTTAT+TGG - chr5_4:68289218-68289237 None:intergenic 10.0%
!! AAAAACTATATATATATTGT+TGG + chr5_4:68291380-68291399 Msa0866550:intron 10.0%
!! TTTACATATATTTGAAAATA+AGG - chr5_4:68297041-68297060 None:intergenic 10.0%
!!! TAAACATTCATATTTTTAAG+TGG + chr5_4:68289219-68289238 Msa0866550:intron 15.0%
!! TTTATTTAACATCAGATTAT+TGG + chr5_4:68290217-68290236 Msa0866550:intron 15.0%
!! ATTGAAAAAAAAATACAACA+TGG - chr5_4:68290379-68290398 None:intergenic 15.0%
!! TGTCATATCAATTATTAATA+TGG + chr5_4:68290563-68290582 Msa0866550:intron 15.0%
!! AAACTACTATTGATATTTAA+AGG + chr5_4:68290898-68290917 Msa0866550:intron 15.0%
!!! TATATATAGTTTTTTGTCAA+CGG - chr5_4:68291374-68291393 None:intergenic 15.0%
!! NNNNNNNNNCAAATATGAGT+AGG - chr5_4:68295485-68295504 None:intergenic 15.0%
!! TTTAAGTAAAATTTCACAAT+TGG - chr5_4:68295707-68295726 None:intergenic 15.0%
!! TAACAATTAAGAAAATGTAT+CGG - chr5_4:68295959-68295978 None:intergenic 15.0%
!! AAATATATGTAAATCAGAAA+GGG + chr5_4:68297048-68297067 Msa0866550:three_prime_UTR 15.0%
!! AATGAAAATGAGCTATTTAT+TGG - chr5_4:68289269-68289288 None:intergenic 20.0%
!!! AATAAATAGCTCATTTTCAT+TGG + chr5_4:68289268-68289287 Msa0866550:intron 20.0%
!!! AGAAAAAACCTTCATTTTTT+TGG + chr5_4:68289330-68289349 Msa0866550:intron 20.0%
!!! GAAAAAACCTTCATTTTTTT+GGG + chr5_4:68289331-68289350 Msa0866550:intron 20.0%
!!! CTTTTTTAGTTGTTCATTAA+TGG + chr5_4:68289528-68289547 Msa0866550:intron 20.0%
!!! GCAAAATTTTGATTAAATTG+TGG + chr5_4:68289715-68289734 Msa0866550:intron 20.0%
!! AAGCTATATAAAATACTAGA+AGG - chr5_4:68289987-68290006 None:intergenic 20.0%
!! TTGGTAGAATTATCATTTAA+AGG + chr5_4:68290236-68290255 Msa0866550:intron 20.0%
!! TATAATATATAAACATCAGC+AGG - chr5_4:68290530-68290549 None:intergenic 20.0%
!! GTATTGCTTAACTATATATA+TGG + chr5_4:68290621-68290640 Msa0866550:intron 20.0%
!!! CAATAGTAGTTTTTATAACA+CGG - chr5_4:68290890-68290909 None:intergenic 20.0%
!! TAAAAAAATTATTCAATGCG+AGG + chr5_4:68291026-68291045 Msa0866550:intron 20.0%
!! TAATACACAATGTTATATCT+AGG - chr5_4:68291235-68291254 None:intergenic 20.0%
!!! TGAGGACAAATATTTTAAAA+AGG + chr5_4:68291312-68291331 Msa0866550:intron 20.0%
!!! GACAAATATTTTAAAAAGGT+GGG + chr5_4:68291316-68291335 Msa0866550:intron 20.0%
!!! ACAAATATTTTAAAAAGGTG+GGG + chr5_4:68291317-68291336 Msa0866550:intron 20.0%
!! TTAATTCTAGTGAGAAAAAT+TGG + chr5_4:68291411-68291430 Msa0866550:intron 20.0%
!! TATATAAACACTTACTAGTT+GGG - chr5_4:68291509-68291528 None:intergenic 20.0%
!! TTATATAAACACTTACTAGT+TGG - chr5_4:68291510-68291529 None:intergenic 20.0%
!! AACTAGTAAGTGTTTATATA+AGG + chr5_4:68291509-68291528 Msa0866550:intron 20.0%
!! ACTAGTAAGTGTTTATATAA+GGG + chr5_4:68291510-68291529 Msa0866550:intron 20.0%
!!! TTCTGGTTTTTTATTGAATA+AGG + chr5_4:68293667-68293686 Msa0866550:intron 20.0%
!!! TGTTGTGTGATTTTAATATT+TGG + chr5_4:68293822-68293841 Msa0866550:intron 20.0%
!! AATTCATTCAAAGATAACTT+AGG - chr5_4:68293911-68293930 None:intergenic 20.0%
!!! GAAATTTTGTTCTTAGTTTT+AGG - chr5_4:68294442-68294461 None:intergenic 20.0%
!!! CTTTTCTTCAAAATTTCATA+AGG - chr5_4:68294466-68294485 None:intergenic 20.0%
!! AAATTTCGTTTCATAGAAAT+CGG - chr5_4:68294671-68294690 None:intergenic 20.0%
!!! GTTTATTTTTTAAACTTCGA+TGG + chr5_4:68295657-68295676 Msa0866550:intron 20.0%
!! TTTCATTGATAAACTTTAGT+CGG + chr5_4:68296529-68296548 Msa0866550:intron 20.0%
!!! TTCTTTTTTTTTTCTTTTCC+AGG + chr5_4:68296580-68296599 Msa0866550:intron 20.0%
!!! TCTTTTTTTTTTCTTTTCCA+GGG + chr5_4:68296581-68296600 Msa0866550:intron 20.0%
!! CAAATATATGTAAATCAGAA+AGG + chr5_4:68297047-68297066 Msa0866550:three_prime_UTR 20.0%
! ACCAAATATTAACCTAATGT+TGG + chr5_4:68289103-68289122 Msa0866550:intron 25.0%
! ACCAACATTAGGTTAATATT+TGG - chr5_4:68289107-68289126 None:intergenic 25.0%
!! CTAAGGTATCAATGAAAAAA+TGG + chr5_4:68289175-68289194 Msa0866550:intron 25.0%
! AAAATGAGCTATTTATTGGT+GGG - chr5_4:68289265-68289284 None:intergenic 25.0%
!! TCTAGATTACCTTTGAAAAA+TGG - chr5_4:68289313-68289332 None:intergenic 25.0%
! CTAATTGCATTCAATTAACT+TGG + chr5_4:68289379-68289398 Msa0866550:intron 25.0%
!! TGACAAAGAATTATTTTCCT+TGG - chr5_4:68289409-68289428 None:intergenic 25.0%
! AGGAAAATAATTCTTTGTCA+AGG + chr5_4:68289409-68289428 Msa0866550:intron 25.0%
!! TAGGTATTGCACATAATTAA+GGG - chr5_4:68289479-68289498 None:intergenic 25.0%
! CAAATAGCTAATAATTCCAA+GGG - chr5_4:68289757-68289776 None:intergenic 25.0%
! GAATTATTAGCTATTTGCTT+GGG + chr5_4:68289760-68289779 Msa0866550:intron 25.0%
!! TGATTTAGTTTCTTCTATGT+TGG + chr5_4:68289808-68289827 Msa0866550:intron 25.0%
! TTTCAAAATCAAAGTTCCAA+GGG - chr5_4:68289864-68289883 None:intergenic 25.0%
! ATGATCCTGTTAAATTACTA+TGG - chr5_4:68290158-68290177 None:intergenic 25.0%
! TAAAGGTGAATTATGATTAG+TGG + chr5_4:68290253-68290272 Msa0866550:intron 25.0%
!! ATAAAGAAGTTTTCTGCATT+CGG - chr5_4:68290835-68290854 None:intergenic 25.0%
! CAATAACAAAGAAAATAACG+AGG - chr5_4:68290867-68290886 None:intergenic 25.0%
! TGTTAAAGTGAACATATTGT+TGG + chr5_4:68290948-68290967 Msa0866550:intron 25.0%
! ATGCATTACAATATTTCTCT+AGG + chr5_4:68290974-68290993 Msa0866550:intron 25.0%
! TGCATTACAATATTTCTCTA+GGG + chr5_4:68290975-68290994 Msa0866550:intron 25.0%
! TTAGTTAATGACGTAAGTAA+AGG + chr5_4:68291252-68291271 Msa0866550:intron 25.0%
!! TTATAGTTTGAGCAATTTTG+AGG + chr5_4:68291294-68291313 Msa0866550:intron 25.0%
!!! GGACAAATATTTTAAAAAGG+TGG + chr5_4:68291315-68291334 Msa0866550:intron 25.0%
! ATATAAACACTTACTAGTTG+GGG - chr5_4:68291508-68291527 None:intergenic 25.0%
! GTTTCTTAATTGGAAATATC+TGG - chr5_4:68291813-68291832 None:intergenic 25.0%
! AATGATTCGTTAACACAAAT+CGG - chr5_4:68292039-68292058 None:intergenic 25.0%
! TTACTATCGTGAAACTTAAA+CGG - chr5_4:68292435-68292454 None:intergenic 25.0%
!!! GTTTTTTCTAACTACGAAAA+AGG + chr5_4:68292482-68292501 Msa0866550:intron 25.0%
! GAATAAATATAACACTGAAG+AGG + chr5_4:68292803-68292822 Msa0866550:intron 25.0%
! AACACTAAAAAGAAATCTGT+GGG + chr5_4:68293137-68293156 Msa0866550:intron 25.0%
! AATGATAACTGAAATCAACA+TGG + chr5_4:68293415-68293434 Msa0866550:intron 25.0%
! ACTAAATTCTTCCTAATTCT+AGG - chr5_4:68293647-68293666 None:intergenic 25.0%
!! ATTAGGAAGAATTTAGTTTC+TGG + chr5_4:68293650-68293669 Msa0866550:intron 25.0%
! TGATATGTACTCTATTACTA+AGG + chr5_4:68293715-68293734 Msa0866550:intron 25.0%
! ATTTCTAATATGAGCAATCT+CGG + chr5_4:68293878-68293897 Msa0866550:intron 25.0%
! AGTCAAGCAAAAATAACAAA+AGG + chr5_4:68293950-68293969 Msa0866550:intron 25.0%
! ATGTACTAATTCAAATGGTT+CGG - chr5_4:68294002-68294021 None:intergenic 25.0%
! TCAGAATGTACTAATTCAAA+TGG - chr5_4:68294007-68294026 None:intergenic 25.0%
! AGAATCCATTTCATCATTTA+TGG - chr5_4:68294941-68294960 None:intergenic 25.0%
! AAAATCCATTTACAACCTAT+TGG - chr5_4:68295015-68295034 None:intergenic 25.0%
!!! GTGAAAACTGCTTTTTTAAA+TGG + chr5_4:68295219-68295238 Msa0866550:intron 25.0%
!! NNNNACAACAGTATTGAAGA+AGG + chr5_4:68295592-68295611 Msa0866550:intron 25.0%
! AGTAAAATTTCACAATTGGA+TGG - chr5_4:68295703-68295722 None:intergenic 25.0%
!! TTTTGCCAATGAATTATTTG+TGG + chr5_4:68295764-68295783 Msa0866550:intron 25.0%
!! ACATAAATGTGATAATGCAA+TGG - chr5_4:68295811-68295830 None:intergenic 25.0%
! TAATGAACAAATTCCAAAGA+AGG + chr5_4:68296301-68296320 Msa0866550:CDS 25.0%
!! GATGCAAAGATATTTCATTT+TGG + chr5_4:68296437-68296456 Msa0866550:intron 25.0%
!!! AACTTGCTACATCTATATAT+AGG - chr5_4:68296986-68297005 None:intergenic 25.0%
! TATAGATGTAGCAAGTTATT+TGG + chr5_4:68296989-68297008 Msa0866550:three_prime_UTR 25.0%
! ATGAATTATTACGCACAATT+TGG + chr5_4:68297079-68297098 Msa0866550:three_prime_UTR 25.0%
CAGTGAAATAAAAAAGCCAA+TGG + chr5_4:68289134-68289153 Msa0866550:intron 30.0%
! AAAGCCAATGGTTTCATTTT+TGG + chr5_4:68289146-68289165 Msa0866550:intron 30.0%
!!! TTCATTTTTGGTGACAACTA+AGG + chr5_4:68289158-68289177 Msa0866550:intron 30.0%
AGGTATCAATGAAAAAATGG+TGG + chr5_4:68289178-68289197 Msa0866550:intron 30.0%
AAATGAGCTATTTATTGGTG+GGG - chr5_4:68289264-68289283 None:intergenic 30.0%
GAAAATGAGCTATTTATTGG+TGG - chr5_4:68289266-68289285 None:intergenic 30.0%
! AATAGCTCATTTTCATTGGT+TGG + chr5_4:68289272-68289291 Msa0866550:intron 30.0%
!! AATTACCCACCATTTTTCAA+AGG + chr5_4:68289301-68289320 Msa0866550:intron 30.0%
! GATTACCTTTGAAAAATGGT+GGG - chr5_4:68289309-68289328 None:intergenic 30.0%
! AGATTACCTTTGAAAAATGG+TGG - chr5_4:68289310-68289329 None:intergenic 30.0%
CCTTTAACCCAAAAAAATGA+AGG - chr5_4:68289341-68289360 None:intergenic 30.0%
!!! CCTTCATTTTTTTGGGTTAA+AGG + chr5_4:68289338-68289357 Msa0866550:intron 30.0%
! CTAGGTATTGCACATAATTA+AGG - chr5_4:68289480-68289499 None:intergenic 30.0%
TTAATTCATTCCTTTGTCTC+AGG + chr5_4:68289613-68289632 Msa0866550:intron 30.0%
! TTTTATAAGTCCTGAGACAA+AGG - chr5_4:68289626-68289645 None:intergenic 30.0%
GCAAATAGCTAATAATTCCA+AGG - chr5_4:68289758-68289777 None:intergenic 30.0%
GGAATTATTAGCTATTTGCT+TGG + chr5_4:68289759-68289778 Msa0866550:intron 30.0%
TTCAAAATCAAAGTTCCAAG+GGG - chr5_4:68289863-68289882 None:intergenic 30.0%
CTTTCAAAATCAAAGTTCCA+AGG - chr5_4:68289865-68289884 None:intergenic 30.0%
AATCAAGATTCCTAATCACA+AGG - chr5_4:68290058-68290077 None:intergenic 30.0%
GTGTACCATAGTAATTTAAC+AGG + chr5_4:68290150-68290169 Msa0866550:intron 30.0%
CTTTCAACATGTACTTGTAA+AGG - chr5_4:68290189-68290208 None:intergenic 30.0%
! TAAAGAAGTTTTCTGCATTC+GGG - chr5_4:68290834-68290853 None:intergenic 30.0%
AAAGGAGCAACTAAATCAAT+TGG + chr5_4:68290916-68290935 Msa0866550:intron 30.0%
GCATTACAATATTTCTCTAG+GGG + chr5_4:68290976-68290995 Msa0866550:intron 30.0%
AAAATTATTCAATGCGAGGA+TGG + chr5_4:68291030-68291049 Msa0866550:intron 30.0%
ACGGGTAAGTATATAAGAAT+CGG + chr5_4:68291133-68291152 Msa0866550:intron 30.0%
AAGTATATAAGAATCGGGTA+TGG + chr5_4:68291139-68291158 Msa0866550:intron 30.0%
AGTATATAAGAATCGGGTAT+GGG + chr5_4:68291140-68291159 Msa0866550:intron 30.0%
AACGGTGTAAAAAAAGAGTT+GGG - chr5_4:68291356-68291375 None:intergenic 30.0%
AGTAAGTGTTTATATAAGGG+TGG + chr5_4:68291513-68291532 Msa0866550:intron 30.0%
GTAAGTGTTTATATAAGGGT+GGG + chr5_4:68291514-68291533 Msa0866550:intron 30.0%
TAAGTGTTTATATAAGGGTG+GGG + chr5_4:68291515-68291534 Msa0866550:intron 30.0%
! TATATCAAAGTTTCTGGATC+GGG - chr5_4:68291734-68291753 None:intergenic 30.0%
! GTATATCAAAGTTTCTGGAT+CGG - chr5_4:68291735-68291754 None:intergenic 30.0%
CTTTCGTATATCAAAGTTTC+TGG - chr5_4:68291740-68291759 None:intergenic 30.0%
!!! AAGGCGTTTTGTTTCTTAAT+TGG - chr5_4:68291823-68291842 None:intergenic 30.0%
! AACGATTGAACCATATTTTG+AGG + chr5_4:68292135-68292154 Msa0866550:intron 30.0%
GAGAATTACACCTCAAAATA+TGG - chr5_4:68292148-68292167 None:intergenic 30.0%
TTATACCGAACGAAATTACT+GGG - chr5_4:68292315-68292334 None:intergenic 30.0%
ATTATACCGAACGAAATTAC+TGG - chr5_4:68292316-68292335 None:intergenic 30.0%
TTACATATTGAACTGTCTTG+CGG + chr5_4:68292719-68292738 Msa0866550:intron 30.0%
!! TAAAGAAATTTGCTGTGAGT+CGG + chr5_4:68292832-68292851 Msa0866550:intron 30.0%
AAAACAAGAACTGAATGAAG+AGG + chr5_4:68293094-68293113 Msa0866550:intron 30.0%
CAACACTAAAAAGAAATCTG+TGG + chr5_4:68293136-68293155 Msa0866550:intron 30.0%
CTGCAAATAAGAATTCCAAT+CGG + chr5_4:68293207-68293226 Msa0866550:intron 30.0%
AATTCCAATCGGAATAAGAA+TGG + chr5_4:68293218-68293237 Msa0866550:intron 30.0%
ATTCCAATCGGAATAAGAAT+GGG + chr5_4:68293219-68293238 Msa0866550:intron 30.0%
TCAGTTATCATTGCCATATA+CGG - chr5_4:68293407-68293426 None:intergenic 30.0%
ATAACTGAAATCAACATGGT+GGG + chr5_4:68293419-68293438 Msa0866550:intron 30.0%
!!! GGTTTTTTATTGAATAAGGC+TGG + chr5_4:68293671-68293690 Msa0866550:intron 30.0%
GTGCTCTTTATAATACTCAT+TGG - chr5_4:68294248-68294267 None:intergenic 30.0%
GTTCGAATGTAAGACAAATT+TGG - chr5_4:68294493-68294512 None:intergenic 30.0%
ATTTGTCTTACATTCGAACA+TGG + chr5_4:68294494-68294513 Msa0866550:intron 30.0%
TTTGTCTTACATTCGAACAT+GGG + chr5_4:68294495-68294514 Msa0866550:intron 30.0%
CCTATGAATGTGTATTCATT+GGG + chr5_4:68294575-68294594 Msa0866550:intron 30.0%
! GTTTTATGACCTAAAAGCTA+AGG + chr5_4:68294624-68294643 Msa0866550:intron 30.0%
TTATCACTATCCTTAATCAC+CGG - chr5_4:68294763-68294782 None:intergenic 30.0%
AATGTATTGTCCACATATTC+AGG - chr5_4:68294853-68294872 None:intergenic 30.0%
AGAAGCCATAAATGATGAAA+TGG + chr5_4:68294933-68294952 Msa0866550:intron 30.0%
AAAAAGAAACTGAAACCTGA+TGG + chr5_4:68295036-68295055 Msa0866550:intron 30.0%
TATTTATCAACAGTTCCATC+AGG - chr5_4:68295054-68295073 None:intergenic 30.0%
! TGGAACTGTTGATAAATACA+AGG + chr5_4:68295056-68295075 Msa0866550:intron 30.0%
! TAACTTGATAGTACACCAAA+TGG + chr5_4:68295194-68295213 Msa0866550:intron 30.0%
!!! TGCTTTTTTAAATGGTGAGT+TGG + chr5_4:68295227-68295246 Msa0866550:intron 30.0%
GTTGGAAGAAGAAATCTATA+TGG + chr5_4:68295245-68295264 Msa0866550:intron 30.0%
AAGTTAGACAAATCTCTGTA+TGG + chr5_4:68295315-68295334 Msa0866550:intron 30.0%
CACTTCCACAAATAATTCAT+TGG - chr5_4:68295772-68295791 None:intergenic 30.0%
TTATTCAACAACAAACGTGA+AGG - chr5_4:68295925-68295944 None:intergenic 30.0%
TTCTATGCATACTAAAACTC+AGG - chr5_4:68296007-68296026 None:intergenic 30.0%
TTTAGTATGCATAGAACTGT+AGG + chr5_4:68296011-68296030 Msa0866550:intron 30.0%
CTAGCAAATTAATTGATCAC+TGG + chr5_4:68296035-68296054 Msa0866550:intron 30.0%
TGCTATGAATGAACAACTAA+AGG + chr5_4:68296247-68296266 Msa0866550:CDS 30.0%
! ACGAACAAAACTTTTCTGAA+GGG - chr5_4:68296279-68296298 None:intergenic 30.0%
!! AAGGATGAGGTATTTTGTTT+GGG + chr5_4:68296320-68296339 Msa0866550:intron 30.0%
!!! TCATTTTTTTCCCCTTTCAA+TGG - chr5_4:68296393-68296412 None:intergenic 30.0%
!! AGATATTTCATTTTGGCCAT+CGG + chr5_4:68296444-68296463 Msa0866550:intron 30.0%
GTTTATCAATGAAAACTACC+CGG - chr5_4:68296523-68296542 None:intergenic 30.0%
AAATTTACATCCACATCTAC+AGG - chr5_4:68296647-68296666 None:intergenic 30.0%
TCCTACTTTCAAATTTACCA+AGG - chr5_4:68297015-68297034 None:intergenic 30.0%
AATGAATTAAACCCTACAGA+AGG + chr5_4:68297122-68297141 Msa0866550:three_prime_UTR 30.0%
ATGAATTAAACCCTACAGAA+GGG + chr5_4:68297123-68297142 Msa0866550:three_prime_UTR 30.0%
ACTGAATCGTTACCAACATT+AGG - chr5_4:68289118-68289137 None:intergenic 35.0%
GTCACCAAAAATGAAACCAT+TGG - chr5_4:68289153-68289172 None:intergenic 35.0%
! TCAATTAACTTGGAGAACCA+AGG + chr5_4:68289389-68289408 Msa0866550:intron 35.0%
CCAAAAAAAATGACGTAGCT+AGG - chr5_4:68289498-68289517 None:intergenic 35.0%
!!! CCTAGCTACGTCATTTTTTT+TGG + chr5_4:68289495-68289514 Msa0866550:intron 35.0%
!! TTTATCCTACTTTTACCCCT+TGG + chr5_4:68289845-68289864 Msa0866550:intron 35.0%
TACACCAAGGTTGAACAAAT+GGG - chr5_4:68290112-68290131 None:intergenic 35.0%
CAACATGTACTTGTAAAGGA+AGG - chr5_4:68290185-68290204 None:intergenic 35.0%
TTATTTCCCATTGTTGCTAG+TGG + chr5_4:68290298-68290317 Msa0866550:intron 35.0%
TATTTCCCATTGTTGCTAGT+GGG + chr5_4:68290299-68290318 Msa0866550:intron 35.0%
TGTGATGCAACTTCGTATAT+TGG + chr5_4:68290326-68290345 Msa0866550:intron 35.0%
GTGATGCAACTTCGTATATT+GGG + chr5_4:68290327-68290346 Msa0866550:intron 35.0%
AGTATAGATCCCTAACTGAT+TGG + chr5_4:68290459-68290478 Msa0866550:intron 35.0%
GTGCATAAACCAATCAGTTA+GGG - chr5_4:68290471-68290490 None:intergenic 35.0%
TGTGCATAAACCAATCAGTT+AGG - chr5_4:68290472-68290491 None:intergenic 35.0%
CTATATATATGGCTGCCATT+AGG + chr5_4:68290632-68290651 Msa0866550:intron 35.0%
! AAATTGTGTTTAGTTCGCGT+GGG - chr5_4:68290687-68290706 None:intergenic 35.0%
GCGAACTAAACACAATTTGA+CGG + chr5_4:68290689-68290708 Msa0866550:intron 35.0%
CGAACTAAACACAATTTGAC+GGG + chr5_4:68290690-68290709 Msa0866550:intron 35.0%
! TTTTCCCCGATTTCAAAACA+CGG + chr5_4:68290751-68290770 Msa0866550:intron 35.0%
TTCAATTTCTCATCCTCGTT+GGG + chr5_4:68291097-68291116 Msa0866550:intron 35.0%
CGGGTAAGTATATAAGAATC+GGG + chr5_4:68291134-68291153 Msa0866550:intron 35.0%
GTATATAAGAATCGGGTATG+GGG + chr5_4:68291141-68291160 Msa0866550:intron 35.0%
TATATCTAGGTAGTCAATCC+CGG - chr5_4:68291222-68291241 None:intergenic 35.0%
ACGGTGTAAAAAAAGAGTTG+GGG - chr5_4:68291355-68291374 None:intergenic 35.0%
CAACGGTGTAAAAAAAGAGT+TGG - chr5_4:68291357-68291376 None:intergenic 35.0%
ACTACGAGAAATTAGTGTGT+GGG + chr5_4:68291447-68291466 Msa0866550:intron 35.0%
GACTTAAAAATGTCCCACAT+TGG + chr5_4:68291475-68291494 Msa0866550:intron 35.0%
! ATATCTGGAAGTTTCTGGAT+CGG - chr5_4:68291798-68291817 None:intergenic 35.0%
TGGAAATATCTGGAAGTTTC+TGG - chr5_4:68291803-68291822 None:intergenic 35.0%
AAACAAAACGCCTTTGCTTA+AGG + chr5_4:68291829-68291848 Msa0866550:intron 35.0%
TCTGCTTAATCCTTAAGCAA+AGG - chr5_4:68291842-68291861 None:intergenic 35.0%
TTACGAACTCTGCCTATAAA+AGG + chr5_4:68291940-68291959 Msa0866550:intron 35.0%
!! ATTTGGTGTGAAGAATGAGT+GGG - chr5_4:68291975-68291994 None:intergenic 35.0%
ATTCGTTAACACAAATCGGA+GGG - chr5_4:68292035-68292054 None:intergenic 35.0%
GAAACCATGAATACCAACAA+CGG + chr5_4:68292372-68292391 Msa0866550:intron 35.0%
AATTCCGTTGTTGGTATTCA+TGG - chr5_4:68292379-68292398 None:intergenic 35.0%
TAAGTTATCCTTCAAGACGT+GGG - chr5_4:68292511-68292530 None:intergenic 35.0%
! TTTCACCTTTTCAGCATGTT+CGG - chr5_4:68292646-68292665 None:intergenic 35.0%
TCTGATTCATAAGACAGCTA+AGG + chr5_4:68292761-68292780 Msa0866550:intron 35.0%
ATAAGACAGCTAAGGATGTT+TGG + chr5_4:68292769-68292788 Msa0866550:intron 35.0%
TAAGACAGCTAAGGATGTTT+GGG + chr5_4:68292770-68292789 Msa0866550:intron 35.0%
AAATATAACACTGAAGAGGC+TGG + chr5_4:68292807-68292826 Msa0866550:intron 35.0%
CGTCGATCATCTTATAGTTT+AGG - chr5_4:68292860-68292879 None:intergenic 35.0%
! GCTCATGAGATTTTTGTTGA+AGG + chr5_4:68292921-68292940 Msa0866550:intron 35.0%
TTCTTAAATTGTTTGCCAGC+AGG - chr5_4:68293176-68293195 None:intergenic 35.0%
! TGGAATTCTTATTTGCAGGA+CGG - chr5_4:68293205-68293224 None:intergenic 35.0%
! CGATTGGAATTCTTATTTGC+AGG - chr5_4:68293209-68293228 None:intergenic 35.0%
TAAGAATGGGAACTCACAAA+AGG + chr5_4:68293232-68293251 Msa0866550:intron 35.0%
CCGCAATTGTAGCAATTAAA+CGG - chr5_4:68293296-68293315 None:intergenic 35.0%
CCGTTTAATTGCTACAATTG+CGG + chr5_4:68293293-68293312 Msa0866550:intron 35.0%
GATAACTGAAATCAACATGG+TGG + chr5_4:68293418-68293437 Msa0866550:intron 35.0%
GTACTCTATTACTAAGGATG+AGG + chr5_4:68293721-68293740 Msa0866550:intron 35.0%
! ACTAAGGATGAGGTTTTTGT+TGG + chr5_4:68293731-68293750 Msa0866550:intron 35.0%
! CTAAGGATGAGGTTTTTGTT+GGG + chr5_4:68293732-68293751 Msa0866550:intron 35.0%
! ATGAGGTTTTTGTTGGGAAA+GGG + chr5_4:68293738-68293757 Msa0866550:intron 35.0%
TCTGATATATGCGAACTTGA+TGG + chr5_4:68294022-68294041 Msa0866550:intron 35.0%
GATGGTAACTTGACTAGAAA+CGG + chr5_4:68294040-68294059 Msa0866550:intron 35.0%
ATGGTAACTTGACTAGAAAC+GGG + chr5_4:68294041-68294060 Msa0866550:intron 35.0%
TTGTCTTACATTCGAACATG+GGG + chr5_4:68294496-68294515 Msa0866550:intron 35.0%
GCCTATGAATGTGTATTCAT+TGG + chr5_4:68294574-68294593 Msa0866550:intron 35.0%
CCCAATGAATACACATTCAT+AGG - chr5_4:68294578-68294597 None:intergenic 35.0%
CCTATATGCTTTACTGTTCA+TGG - chr5_4:68294605-68294624 None:intergenic 35.0%
CCATGAACAGTAAAGCATAT+AGG + chr5_4:68294602-68294621 Msa0866550:intron 35.0%
!! CTATGATCACCTTAGCTTTT+AGG - chr5_4:68294636-68294655 None:intergenic 35.0%
CCACTATCTCTTGATAGATA+GGG - chr5_4:68294694-68294713 None:intergenic 35.0%
CCTATCTATCAAGAGATAGT+GGG + chr5_4:68294692-68294711 Msa0866550:intron 35.0%
CTATCTATCAAGAGATAGTG+GGG + chr5_4:68294693-68294712 Msa0866550:intron 35.0%
! TATCTATCAAGAGATAGTGG+GGG + chr5_4:68294694-68294713 Msa0866550:intron 35.0%
TGTGGACAATACATTAGAAG+AGG + chr5_4:68294858-68294877 Msa0866550:intron 35.0%
AGAGGATCCATCAAATCTTA+AGG + chr5_4:68294876-68294895 Msa0866550:intron 35.0%
AGAGCTTCCTTAAGATTTGA+TGG - chr5_4:68294886-68294905 None:intergenic 35.0%
GCAAACCAATAGGTTGTAAA+TGG + chr5_4:68295007-68295026 Msa0866550:intron 35.0%
! TTCTCTTTGTCTGAAACCTT+TGG - chr5_4:68295094-68295113 None:intergenic 35.0%
TTACTCGAATCACATCCATA+AGG + chr5_4:68295145-68295164 Msa0866550:intron 35.0%
TACTCGAATCACATCCATAA+GGG + chr5_4:68295146-68295165 Msa0866550:intron 35.0%
CAAGGAAATTAGTACCCTTA+TGG - chr5_4:68295163-68295182 None:intergenic 35.0%
!! CATAAGGGTACTAATTTCCT+TGG + chr5_4:68295161-68295180 Msa0866550:intron 35.0%
! AAGCAGTTTTCACATCCATT+TGG - chr5_4:68295212-68295231 None:intergenic 35.0%
ATCTATATGGAACAACCTGA+AGG + chr5_4:68295258-68295277 Msa0866550:intron 35.0%
ATACTTTGCTTTCCTAACCA+TGG - chr5_4:68295293-68295312 None:intergenic 35.0%
! ACTTTTCATGCCATTGCTTA+GGG - chr5_4:68295353-68295372 None:intergenic 35.0%
! AACTTTTCATGCCATTGCTT+AGG - chr5_4:68295354-68295373 None:intergenic 35.0%
TAAAAATCTTACCGAAGTCC+AGG - chr5_4:68295630-68295649 None:intergenic 35.0%
AGTTCAACATAAAGCAAGAG+AGG - chr5_4:68295735-68295754 None:intergenic 35.0%
ATTGTTAGTGATGCTGTGAT+AGG + chr5_4:68295972-68295991 Msa0866550:intron 35.0%
TAATGAAGTGATCGTCTGTT+TGG - chr5_4:68296068-68296087 None:intergenic 35.0%
! TGAGGATAATGATGATGAAG+AGG + chr5_4:68296199-68296218 Msa0866550:CDS 35.0%
! CACGAACAAAACTTTTCTGA+AGG - chr5_4:68296280-68296299 None:intergenic 35.0%
ACAAATTCCAAAGAAGGATG+AGG + chr5_4:68296307-68296326 Msa0866550:CDS 35.0%
CAAAATACCTCATCCTTCTT+TGG - chr5_4:68296317-68296336 None:intergenic 35.0%
!! GAAGGATGAGGTATTTTGTT+TGG + chr5_4:68296319-68296338 Msa0866550:intron 35.0%
! TCAATGGACTTTGTGTAGTT+TGG - chr5_4:68296377-68296396 None:intergenic 35.0%
ACTACACAAAGTCCATTGAA+AGG + chr5_4:68296378-68296397 Msa0866550:intron 35.0%
CTACACAAAGTCCATTGAAA+GGG + chr5_4:68296379-68296398 Msa0866550:intron 35.0%
TACACAAAGTCCATTGAAAG+GGG + chr5_4:68296380-68296399 Msa0866550:intron 35.0%
! ATTCCTTTTCTTCCCAACAA+GGG + chr5_4:68296684-68296703 Msa0866550:CDS 35.0%
!! AAGTTGATGGGTTCTCAAAT+AGG + chr5_4:68296824-68296843 Msa0866550:three_prime_UTR 35.0%
!! AGTTGATGGGTTCTCAAATA+GGG + chr5_4:68296825-68296844 Msa0866550:three_prime_UTR 35.0%
! TTTTGCAACATTTCTTCACC+TGG - chr5_4:68296857-68296876 None:intergenic 35.0%
AAATAACACTGTTCTTCACC+TGG - chr5_4:68296932-68296951 None:intergenic 35.0%
!! TTATTTCCTTGCCTTGTTTG+AGG + chr5_4:68296946-68296965 Msa0866550:three_prime_UTR 35.0%
!! TATTTCCTTGCCTTGTTTGA+GGG + chr5_4:68296947-68296966 Msa0866550:three_prime_UTR 35.0%
GCCTTGGTAAATTTGAAAGT+AGG + chr5_4:68297011-68297030 Msa0866550:three_prime_UTR 35.0%
TGGATTGTGTATGGTAGTTT+CGG + chr5_4:68297099-68297118 Msa0866550:three_prime_UTR 35.0%
!! AGCTCATTTTCATTGGTTGG+CGG + chr5_4:68289275-68289294 Msa0866550:intron 40.0%
! GCTCAAAGTGAGTTTTTGCA+TGG - chr5_4:68289437-68289456 None:intergenic 40.0%
AAATTATATGCCCTCGTTGC+CGG - chr5_4:68289695-68289714 None:intergenic 40.0%
CATTTGCGTTATAACACCCT+TGG + chr5_4:68289738-68289757 Msa0866550:intron 40.0%
AAGTTCCAAGGGGTAAAAGT+AGG - chr5_4:68289853-68289872 None:intergenic 40.0%
TACCTATCTGCCTTGTGATT+AGG + chr5_4:68290045-68290064 Msa0866550:intron 40.0%
TTCCTAATCACAAGGCAGAT+AGG - chr5_4:68290050-68290069 None:intergenic 40.0%
AATGCCCATTTGTTCAACCT+TGG + chr5_4:68290105-68290124 Msa0866550:intron 40.0%
CTACACCAAGGTTGAACAAA+TGG - chr5_4:68290113-68290132 None:intergenic 40.0%
! AACCTTGGTGTAGTTCCAAT+TGG + chr5_4:68290120-68290139 Msa0866550:intron 40.0%
TGGTACACTCAAACTCCAAT+TGG - chr5_4:68290138-68290157 None:intergenic 40.0%
ATGAACCCACTAGCAACAAT+GGG - chr5_4:68290307-68290326 None:intergenic 40.0%
TATATGGCTGCCATTAGGTA+TGG + chr5_4:68290637-68290656 Msa0866550:intron 40.0%
!!! GGTTTTGTTGCCATACCTAA+TGG - chr5_4:68290650-68290669 None:intergenic 40.0%
! CAAATTGTGTTTAGTTCGCG+TGG - chr5_4:68290688-68290707 None:intergenic 40.0%
ATACCCAAACCCAGTCAAAA+CGG - chr5_4:68290722-68290741 None:intergenic 40.0%
TTTCCCCGATTTCAAAACAC+GGG + chr5_4:68290752-68290771 Msa0866550:intron 40.0%
!!! ATACCCGTGTTTTGAAATCG+GGG - chr5_4:68290758-68290777 None:intergenic 40.0%
!!! CATACCCGTGTTTTGAAATC+GGG - chr5_4:68290759-68290778 None:intergenic 40.0%
!!! CCATACCCGTGTTTTGAAAT+CGG - chr5_4:68290760-68290779 None:intergenic 40.0%
CGATTTCAAAACACGGGTAT+GGG + chr5_4:68290758-68290777 Msa0866550:intron 40.0%
GTTCAATTTCTCATCCTCGT+TGG + chr5_4:68291096-68291115 Msa0866550:intron 40.0%
CACTACGAGAAATTAGTGTG+TGG + chr5_4:68291446-68291465 Msa0866550:intron 40.0%
GTTCACCCGTTCACAAAAAT+GGG - chr5_4:68291569-68291588 None:intergenic 40.0%
! TATCTGGAAGTTTCTGGATC+GGG - chr5_4:68291797-68291816 None:intergenic 40.0%
AACAAAAAACCGCGTGACTT+GGG - chr5_4:68291922-68291941 None:intergenic 40.0%
TAACAAAAAACCGCGTGACT+TGG - chr5_4:68291923-68291942 None:intergenic 40.0%
! TTTGGTGTGAAGAATGAGTG+GGG - chr5_4:68291974-68291993 None:intergenic 40.0%
!! GATTTGGTGTGAAGAATGAG+TGG - chr5_4:68291976-68291995 None:intergenic 40.0%
GATTCGTTAACACAAATCGG+AGG - chr5_4:68292036-68292055 None:intergenic 40.0%
CTACTCCTTTATGTCCCTTT+CGG + chr5_4:68292068-68292087 Msa0866550:intron 40.0%
CAAAACCGAAAGGGACATAA+AGG - chr5_4:68292076-68292095 None:intergenic 40.0%
CGCTCTATTCAAAACCGAAA+GGG - chr5_4:68292085-68292104 None:intergenic 40.0%
!!! CCTTTCGGTTTTGAATAGAG+CGG + chr5_4:68292083-68292102 Msa0866550:intron 40.0%
TTGATTGAAGCCACTCGATA+CGG - chr5_4:68292116-68292135 None:intergenic 40.0%
TGTGCAGTGTATACTCGTAA+CGG + chr5_4:68292182-68292201 Msa0866550:intron 40.0%
TATACTCGTAACGGTGATCT+GGG + chr5_4:68292191-68292210 Msa0866550:intron 40.0%
!! TGATCTGGGCTGTTTTATTC+TGG + chr5_4:68292205-68292224 Msa0866550:intron 40.0%
TAGTCTACCTTGCACAAACT+AGG + chr5_4:68292243-68292262 Msa0866550:intron 40.0%
AGTCTACCTTGCACAAACTA+GGG + chr5_4:68292244-68292263 Msa0866550:intron 40.0%
!! GCTTTCTTTAAGACGTTTCG+CGG - chr5_4:68292275-68292294 None:intergenic 40.0%
ACTCACCCAGTAATTTCGTT+CGG + chr5_4:68292307-68292326 Msa0866550:intron 40.0%
AGAGACAGTAATTCCGTTGT+TGG - chr5_4:68292388-68292407 None:intergenic 40.0%
ACGATAGTAACTTCAAGCGT+TGG + chr5_4:68292445-68292464 Msa0866550:intron 40.0%
GTAAGTTATCCTTCAAGACG+TGG - chr5_4:68292512-68292531 None:intergenic 40.0%
CCTATGGAAACGACTAGTAA+CGG + chr5_4:68292555-68292574 Msa0866550:intron 40.0%
ACATGCTGAAAAGGTGAAAC+AGG + chr5_4:68292647-68292666 Msa0866550:intron 40.0%
AAAGGTGAAACAGGCTGAAA+AGG + chr5_4:68292656-68292675 Msa0866550:intron 40.0%
CTGAAAAGGATATACTCCTC+TGG + chr5_4:68292670-68292689 Msa0866550:intron 40.0%
ATCTGTCGAAGAACAATCTC+AGG + chr5_4:68292884-68292903 Msa0866550:intron 40.0%
!! CTCCTTAGTCTTATGCCTAA+GGG - chr5_4:68293024-68293043 None:intergenic 40.0%
!! ACTCCTTAGTCTTATGCCTA+AGG - chr5_4:68293025-68293044 None:intergenic 40.0%
CTCTTCTTCAATACGAAGTC+GGG - chr5_4:68293069-68293088 None:intergenic 40.0%
CCTCTTCTTCAATACGAAGT+CGG - chr5_4:68293070-68293089 None:intergenic 40.0%
GTTCCCATTCTTATTCCGAT+TGG - chr5_4:68293225-68293244 None:intergenic 40.0%
! TCTTTGATGGTTGAGCTCTT+GGG - chr5_4:68293259-68293278 None:intergenic 40.0%
! TTCTTTGATGGTTGAGCTCT+TGG - chr5_4:68293260-68293279 None:intergenic 40.0%
AGCAATTAAACGGTTGAGCA+GGG - chr5_4:68293286-68293305 None:intergenic 40.0%
TAGCAATTAAACGGTTGAGC+AGG - chr5_4:68293287-68293306 None:intergenic 40.0%
TAGCACGTTCATAACAGACA+TGG - chr5_4:68293484-68293503 None:intergenic 40.0%
ATCACTGAAGTTGCTGGAAT+CGG + chr5_4:68293560-68293579 Msa0866550:intron 40.0%
TGGAGCTTAAATTCACCTCT+GGG + chr5_4:68293588-68293607 Msa0866550:intron 40.0%
TGGGAAGACTCTCATATTGA+AGG + chr5_4:68293607-68293626 Msa0866550:intron 40.0%
TGATGCACACTCCTAGAATT+AGG + chr5_4:68293633-68293652 Msa0866550:intron 40.0%
! GATGAGGTTTTTGTTGGGAA+AGG + chr5_4:68293737-68293756 Msa0866550:intron 40.0%
TCCTGAGATGAATGGTAAAG+CGG + chr5_4:68294300-68294319 Msa0866550:intron 40.0%
CATGATGGCAACTACTAACT+CGG - chr5_4:68294347-68294366 None:intergenic 40.0%
GTTGCCATCATGCTTAATTC+TGG + chr5_4:68294355-68294374 Msa0866550:intron 40.0%
TGCACCAGAATTAAGCATGA+TGG - chr5_4:68294362-68294381 None:intergenic 40.0%
GGGATTAGGAATCCTTACAT+AGG - chr5_4:68294530-68294549 None:intergenic 40.0%
AGTTTGACTCTCTTGGGATT+AGG - chr5_4:68294544-68294563 None:intergenic 40.0%
! CTTGCTAGTTTGACTCTCTT+GGG - chr5_4:68294550-68294569 None:intergenic 40.0%
! ACTTGCTAGTTTGACTCTCT+TGG - chr5_4:68294551-68294570 None:intergenic 40.0%
CCCTATCTATCAAGAGATAG+TGG + chr5_4:68294691-68294710 Msa0866550:intron 40.0%
CCCACTATCTCTTGATAGAT+AGG - chr5_4:68294695-68294714 None:intergenic 40.0%
GCAAGAACTGCTAAAGAGTA+TGG + chr5_4:68294826-68294845 Msa0866550:intron 40.0%
AGAGTATGGACCTGAATATG+TGG + chr5_4:68294840-68294859 Msa0866550:intron 40.0%
CATTTATGGCTTCTTGCCAT+AGG - chr5_4:68294927-68294946 None:intergenic 40.0%
CTCTACAGTCTAACGAAACT+TGG + chr5_4:68294959-68294978 Msa0866550:intron 40.0%
ATGGATGTGATTCGAGTAAC+TGG - chr5_4:68295144-68295163 None:intergenic 40.0%
CAAGTTATAAACAGCAGCCA+AGG - chr5_4:68295181-68295200 None:intergenic 40.0%
!! AGGTTTTGTAGTCCATGGTT+AGG + chr5_4:68295278-68295297 Msa0866550:intron 40.0%
TAAAACAAGCCCCTAAGCAA+TGG + chr5_4:68295340-68295359 Msa0866550:intron 40.0%
! CTTTTCATGCCATTGCTTAG+GGG - chr5_4:68295352-68295371 None:intergenic 40.0%
!! CTCCCATTTGGTTTGAAGTT+GGG + chr5_4:68295888-68295907 Msa0866550:intron 40.0%
TGCCCAACTTCAAACCAAAT+GGG - chr5_4:68295893-68295912 None:intergenic 40.0%
ATGCCCAACTTCAAACCAAA+TGG - chr5_4:68295894-68295913 None:intergenic 40.0%
TATAAGTAGTTTGACCAGCG+TGG + chr5_4:68296486-68296505 Msa0866550:intron 40.0%
ATAAGTAGTTTGACCAGCGT+GGG + chr5_4:68296487-68296506 Msa0866550:intron 40.0%
ATCACATGCAGCAGAAGATA+TGG + chr5_4:68296607-68296626 Msa0866550:CDS 40.0%
! GATTCCTTTTCTTCCCAACA+AGG + chr5_4:68296683-68296702 Msa0866550:CDS 40.0%
TTCCCACAAGATGCTAAGAA+GGG + chr5_4:68296752-68296771 Msa0866550:CDS 40.0%
! TGTTGCTATAGTTTTTGCCG+AGG + chr5_4:68296795-68296814 Msa0866550:three_prime_UTR 40.0%
! CCCATCAACTTTAGAAACCT+CGG - chr5_4:68296815-68296834 None:intergenic 40.0%
!! CCGAGGTTTCTAAAGTTGAT+GGG + chr5_4:68296812-68296831 Msa0866550:three_prime_UTR 40.0%
TGTTGCAAAACCTGTTAACC+AGG + chr5_4:68296867-68296886 Msa0866550:three_prime_UTR 40.0%
GGAAAAAGATCCTGGTTAAC+AGG - chr5_4:68296880-68296899 None:intergenic 40.0%
! GTTAACCAGGATCTTTTTCC+CGG + chr5_4:68296880-68296899 Msa0866550:three_prime_UTR 40.0%
!! TCTTGCTTTTCCCTCAAACA+AGG - chr5_4:68296960-68296979 None:intergenic 40.0%
TGTAGCAAGTTATTTGGCCT+TGG + chr5_4:68296995-68297014 Msa0866550:three_prime_UTR 40.0%
CGCACAATTTGGATTGTGTA+TGG + chr5_4:68297090-68297109 Msa0866550:three_prime_UTR 40.0%
AAGTAAACACCAGCAATACC+TGG - chr5_4:68297156-68297175 None:intergenic 40.0%
!! GCTCATTTTCATTGGTTGGC+GGG + chr5_4:68289276-68289295 Msa0866550:intron 45.0%
AACAAAAGCCTTGCCAAAGC+CGG + chr5_4:68289661-68289680 Msa0866550:intron 45.0%
CTCCAATTGGAACTACACCA+AGG - chr5_4:68290125-68290144 None:intergenic 45.0%
CATGAACCCACTAGCAACAA+TGG - chr5_4:68290308-68290327 None:intergenic 45.0%
TACCCAAACCCAGTCAAAAC+GGG - chr5_4:68290721-68290740 None:intergenic 45.0%
ACTGGGTTTGGGTATGAGTT+TGG + chr5_4:68290727-68290746 Msa0866550:intron 45.0%
CTGGGTTTGGGTATGAGTTT+GGG + chr5_4:68290728-68290747 Msa0866550:intron 45.0%
CCGATTTCAAAACACGGGTA+TGG + chr5_4:68290757-68290776 Msa0866550:intron 45.0%
TTCAAAACACGGGTATGGGA+CGG + chr5_4:68290762-68290781 Msa0866550:intron 45.0%
! AAGTTTTCTGCATTCGGGAC+GGG - chr5_4:68290829-68290848 None:intergenic 45.0%
! GAAGTTTTCTGCATTCGGGA+CGG - chr5_4:68290830-68290849 None:intergenic 45.0%
TTTCTCATCCTCGTTGGGTA+TGG + chr5_4:68291102-68291121 Msa0866550:intron 45.0%
TTCTCATCCTCGTTGGGTAT+GGG + chr5_4:68291103-68291122 Msa0866550:intron 45.0%
ATAAGAATCGGGTATGGGGA+CGG + chr5_4:68291145-68291164 Msa0866550:intron 45.0%
CACAAAAATGGGTACCCCAA+GGG - chr5_4:68291558-68291577 None:intergenic 45.0%
TCACAAAAATGGGTACCCCA+AGG - chr5_4:68291559-68291578 None:intergenic 45.0%
!! GGGGTACCCATTTTTGTGAA+CGG + chr5_4:68291560-68291579 Msa0866550:intron 45.0%
!! GGGTACCCATTTTTGTGAAC+GGG + chr5_4:68291561-68291580 Msa0866550:intron 45.0%
CGTTCACCCGTTCACAAAAA+TGG - chr5_4:68291570-68291589 None:intergenic 45.0%
! TCAAAGTTTCTGGATCGGGT+CGG - chr5_4:68291730-68291749 None:intergenic 45.0%
GCGTAAAACGCGTTTGCTTA+AGG + chr5_4:68291879-68291898 Msa0866550:intron 45.0%
ACAAAAAACCGCGTGACTTG+GGG - chr5_4:68291921-68291940 None:intergenic 45.0%
!! GAAGCATCGACTGTGAGATT+TGG - chr5_4:68291992-68292011 None:intergenic 45.0%
CCGCTCTATTCAAAACCGAA+AGG - chr5_4:68292086-68292105 None:intergenic 45.0%
GTATACTCGTAACGGTGATC+TGG + chr5_4:68292190-68292209 Msa0866550:intron 45.0%
!! GGGCTGTTTTATTCTGGAGA+CGG + chr5_4:68292211-68292230 Msa0866550:intron 45.0%
ACGTCTTAAAGAAAGCGACC+TGG + chr5_4:68292279-68292298 Msa0866550:intron 45.0%
ACCTGTGATACCATCGATGT+CGG + chr5_4:68292530-68292549 Msa0866550:intron 45.0%
CCGTTACTAGTCGTTTCCAT+AGG - chr5_4:68292558-68292577 None:intergenic 45.0%
TAGTAACGGTAAGACAGCAG+TGG + chr5_4:68292569-68292588 Msa0866550:intron 45.0%
ATCTGCAGCAAATGCTGAGT+TGG + chr5_4:68292608-68292627 Msa0866550:intron 45.0%
! CAGCAAATGCTGAGTTGGAA+AGG + chr5_4:68292613-68292632 Msa0866550:intron 45.0%
TACTGCCGAACATGCTGAAA+AGG + chr5_4:68292638-68292657 Msa0866550:intron 45.0%
TATACTCCTCTGGCAAGAAG+AGG + chr5_4:68292680-68292699 Msa0866550:intron 45.0%
TGTAATCCTCTTCTTGCCAG+AGG - chr5_4:68292689-68292708 None:intergenic 45.0%
! ACAGCAATCTGAAACTGCTC+AGG - chr5_4:68292957-68292976 None:intergenic 45.0%
TCTTGAAGTCCTTCCAAGCA+GGG - chr5_4:68292998-68293017 None:intergenic 45.0%
TTCTTGAAGTCCTTCCAAGC+AGG - chr5_4:68292999-68293018 None:intergenic 45.0%
AGGACTTCAAGAATGCCCTT+AGG + chr5_4:68293006-68293025 Msa0866550:intron 45.0%
TGCCCTTAGGCATAAGACTA+AGG + chr5_4:68293019-68293038 Msa0866550:intron 45.0%
CCGACTTCGTATTGAAGAAG+AGG + chr5_4:68293067-68293086 Msa0866550:intron 45.0%
TGAGCAGGGTCATTCTTTGA+TGG - chr5_4:68293272-68293291 None:intergenic 45.0%
TAGAAACCCATCCACTAGAC+CGG + chr5_4:68293343-68293362 Msa0866550:intron 45.0%
GGCTCACTTGACAACAAATG+AGG + chr5_4:68293376-68293395 Msa0866550:intron 45.0%
AAATGAGGAGCAGCCGTATA+TGG + chr5_4:68293391-68293410 Msa0866550:intron 45.0%
! ACTGAAATCAACATGGTGGG+TGG + chr5_4:68293422-68293441 Msa0866550:intron 45.0%
!! TGAAGATCAGAAGGTGCTGT+TGG + chr5_4:68293526-68293545 Msa0866550:intron 45.0%
!! GAAGATCAGAAGGTGCTGTT+GGG + chr5_4:68293527-68293546 Msa0866550:intron 45.0%
TCCAGCAACTTCAGTGATGT+GGG - chr5_4:68293558-68293577 None:intergenic 45.0%
TTCCAGCAACTTCAGTGATG+TGG - chr5_4:68293559-68293578 None:intergenic 45.0%
GTGGAGCTTAAATTCACCTC+TGG + chr5_4:68293587-68293606 Msa0866550:intron 45.0%
CAATATGAGAGTCTTCCCAG+AGG - chr5_4:68293606-68293625 None:intergenic 45.0%
AAGCGCTATCGTAGTGATAG+AGG + chr5_4:68294199-68294218 Msa0866550:intron 45.0%
CCATTCATCTCAGGAGAGTA+AGG - chr5_4:68294295-68294314 None:intergenic 45.0%
CCTTACTCTCCTGAGATGAA+TGG + chr5_4:68294292-68294311 Msa0866550:intron 45.0%
TCCGCTTTACCATTCATCTC+AGG - chr5_4:68294304-68294323 None:intergenic 45.0%
GGCAACTACTAACTCGGTAA+AGG - chr5_4:68294341-68294360 None:intergenic 45.0%
AAAATTTCCCCCCACCAATG+AGG - chr5_4:68294388-68294407 None:intergenic 45.0%
!! AGAGATAGTGGGGGTAATAG+TGG + chr5_4:68294703-68294722 Msa0866550:intron 45.0%
!! GAGATAGTGGGGGTAATAGT+GGG + chr5_4:68294704-68294723 Msa0866550:intron 45.0%
!! AGATAGTGGGGGTAATAGTG+GGG + chr5_4:68294705-68294724 Msa0866550:intron 45.0%
TTAATCACCGGAGTGTGATC+AGG - chr5_4:68294751-68294770 None:intergenic 45.0%
TGATCACACTCCGGTGATTA+AGG + chr5_4:68294750-68294769 Msa0866550:intron 45.0%
TAAGGAAGCTCTGTCTTCCT+TGG + chr5_4:68294894-68294913 Msa0866550:intron 45.0%
! GTCTGAAACCTTTGGCTACA+AGG - chr5_4:68295086-68295105 None:intergenic 45.0%
GATTCGAGTAACTGGTGAGT+AGG - chr5_4:68295136-68295155 None:intergenic 45.0%
! CCATGGACTACAAAACCTTC+AGG - chr5_4:68295276-68295295 None:intergenic 45.0%
!! CCTGAAGGTTTTGTAGTCCA+TGG + chr5_4:68295273-68295292 Msa0866550:intron 45.0%
AGAAGGATCATCATCTGACC+TGG + chr5_4:68295609-68295628 Msa0866550:intron 45.0%
TCATCATCTGACCTGGACTT+CGG + chr5_4:68295616-68295635 Msa0866550:intron 45.0%
CTATACATGCACACACACCT+TGG + chr5_4:68295844-68295863 Msa0866550:intron 45.0%
AACCTGAGAGATGTGAACCA+AGG - chr5_4:68295864-68295883 None:intergenic 45.0%
CCAACTTCAAACCAAATGGG+AGG - chr5_4:68295890-68295909 None:intergenic 45.0%
!! CCTCCCATTTGGTTTGAAGT+TGG + chr5_4:68295887-68295906 Msa0866550:intron 45.0%
GTGATGCTGTGATAGGTAAC+TGG + chr5_4:68295979-68295998 Msa0866550:intron 45.0%
ATTGTGTGTTCCTTCCACCT+TGG + chr5_4:68296097-68296116 Msa0866550:intron 45.0%
GATGATTCTGACGAGAGTGA+TGG + chr5_4:68296164-68296183 Msa0866550:CDS 45.0%
TTTGGCCATCGGTCTTAACA+CGG + chr5_4:68296455-68296474 Msa0866550:intron 45.0%
ATCAATGAAAACTACCCGGC+AGG - chr5_4:68296519-68296538 None:intergenic 45.0%
TGCAGCAGAAGATATGGATG+AGG + chr5_4:68296613-68296632 Msa0866550:CDS 45.0%
AAGCCCTTGTTGGGAAGAAA+AGG - chr5_4:68296690-68296709 None:intergenic 45.0%
! GTCCTGCATCCAATTTGCTT+GGG + chr5_4:68296714-68296733 Msa0866550:CDS 45.0%
! ATCCAATTTGCTTGGGCTCA+TGG + chr5_4:68296721-68296740 Msa0866550:CDS 45.0%
! TCCAATTTGCTTGGGCTCAT+GGG + chr5_4:68296722-68296741 Msa0866550:CDS 45.0%
GTTCCCACAAGATGCTAAGA+AGG + chr5_4:68296751-68296770 Msa0866550:CDS 45.0%
TGCCCTTCTTAGCATCTTGT+GGG - chr5_4:68296757-68296776 None:intergenic 45.0%
TTGCCCTTCTTAGCATCTTG+TGG - chr5_4:68296758-68296777 None:intergenic 45.0%
!! GCCGAGGTTTCTAAAGTTGA+TGG + chr5_4:68296811-68296830 Msa0866550:three_prime_UTR 45.0%
TCTCAAATAGGGTAGTCTCC+AGG + chr5_4:68296836-68296855 Msa0866550:three_prime_UTR 45.0%
! CTTTTCCCTCAAACAAGGCA+AGG - chr5_4:68296955-68296974 None:intergenic 45.0%
TGGCAGATATCCCTTCTGTA+GGG - chr5_4:68297136-68297155 None:intergenic 45.0%
GGTGGGGTCAAGATAGTTCA+TGG - chr5_4:68289248-68289267 None:intergenic 50.0%
TTAGTTCGCGTGGGTAACCA+CGG - chr5_4:68290678-68290697 None:intergenic 50.0%
!!! GGGTTTTCCCCGTTTTGACT+GGG + chr5_4:68290710-68290729 Msa0866550:intron 50.0%
!!! TTCCCCGTTTTGACTGGGTT+TGG + chr5_4:68290715-68290734 Msa0866550:intron 50.0%
!!! TCCCCGTTTTGACTGGGTTT+GGG + chr5_4:68290716-68290735 Msa0866550:intron 50.0%
ACCCAAACCCAGTCAAAACG+GGG - chr5_4:68290720-68290739 None:intergenic 50.0%
TCAAAACACGGGTATGGGAC+GGG + chr5_4:68290763-68290782 Msa0866550:intron 50.0%
TTTGGGTATGGGTTCGAGGT+GGG - chr5_4:68290806-68290825 None:intergenic 50.0%
! TCAATGCGAGGATGGTGATG+AGG + chr5_4:68291038-68291057 Msa0866550:intron 50.0%
ATCCTCGTTGGGTATGGGTA+GGG + chr5_4:68291108-68291127 Msa0866550:intron 50.0%
GTTGGGTATGGGTAGGGTAA+CGG + chr5_4:68291114-68291133 Msa0866550:intron 50.0%
TTGGGTATGGGTAGGGTAAC+GGG + chr5_4:68291115-68291134 Msa0866550:intron 50.0%
TAAGAATCGGGTATGGGGAC+GGG + chr5_4:68291146-68291165 Msa0866550:intron 50.0%
TCTAGGTAGTCAATCCCGGA+TGG - chr5_4:68291218-68291237 None:intergenic 50.0%
TTGGGGTGACTCTCCAATGT+GGG - chr5_4:68291491-68291510 None:intergenic 50.0%
! ACGCGTTTTACGCGTGACTT+GGG - chr5_4:68291872-68291891 None:intergenic 50.0%
! AACGCGTTTTACGCGTGACT+TGG - chr5_4:68291873-68291892 None:intergenic 50.0%
GACTTAATCCCCAAGTCACG+CGG + chr5_4:68291860-68291879 Msa0866550:intron 50.0%
! GGGGCGAGCTTTCCTTTTAT+AGG - chr5_4:68291955-68291974 None:intergenic 50.0%
!! GTTTTATTCTGGAGACGGCG+TGG + chr5_4:68292216-68292235 Msa0866550:intron 50.0%
! GCACTACCCTAGTTTGTGCA+AGG - chr5_4:68292253-68292272 None:intergenic 50.0%
AAAGGTTGCCCACGTCTTGA+AGG + chr5_4:68292500-68292519 Msa0866550:intron 50.0%
ACCGACATCGATGGTATCAC+AGG - chr5_4:68292534-68292553 None:intergenic 50.0%
!! ACCATCGATGTCGGTTCCTA+TGG + chr5_4:68292539-68292558 Msa0866550:intron 50.0%
TCCATAGGAACCGACATCGA+TGG - chr5_4:68292543-68292562 None:intergenic 50.0%
TTGATAAACTGCCCCCTGCT+TGG + chr5_4:68292982-68293001 Msa0866550:intron 50.0%
TTGAAGTCCTTCCAAGCAGG+GGG - chr5_4:68292996-68293015 None:intergenic 50.0%
CTTGAAGTCCTTCCAAGCAG+GGG - chr5_4:68292997-68293016 None:intergenic 50.0%
TGCTACAATTGCGGACATCC+AGG + chr5_4:68293302-68293321 Msa0866550:intron 50.0%
TTGCGGACATCCAGGTCATA+TGG + chr5_4:68293310-68293329 Msa0866550:intron 50.0%
CACTTTCGTGCCATATGACC+TGG - chr5_4:68293323-68293342 None:intergenic 50.0%
! TGGTGGGTGGATCTGATTGT+TGG + chr5_4:68293435-68293454 Msa0866550:intron 50.0%
TGGGTGGATCTGATTGTTGG+TGG + chr5_4:68293438-68293457 Msa0866550:intron 50.0%
! GATTGTTGGTGGATAGACGC+TGG + chr5_4:68293449-68293468 Msa0866550:intron 50.0%
CACTGCTGCTGAAGATCAGA+AGG + chr5_4:68293517-68293536 Msa0866550:intron 50.0%
TCCCACATCACTGAAGTTGC+TGG + chr5_4:68293554-68293573 Msa0866550:intron 50.0%
AGTTGCTGGAATCGGAGATG+TGG + chr5_4:68293568-68293587 Msa0866550:intron 50.0%
! GGGAAAGGGTATGCTACTGA+TGG + chr5_4:68293752-68293771 Msa0866550:intron 50.0%
!! GATAGTGGGGGTAATAGTGG+GGG + chr5_4:68294706-68294725 Msa0866550:intron 50.0%
CACTACACCTGATCACACTC+CGG + chr5_4:68294741-68294760 Msa0866550:intron 50.0%
CTTCCTTGGATGCTGACCTA+TGG + chr5_4:68294908-68294927 Msa0866550:intron 50.0%
TTGCCATAGGTCAGCATCCA+AGG - chr5_4:68294914-68294933 None:intergenic 50.0%
!! CAACCTATTGGTTTGCAGCC+TGG - chr5_4:68295003-68295022 None:intergenic 50.0%
CACCTTGGTTCACATCTCTC+AGG + chr5_4:68295859-68295878 Msa0866550:intron 50.0%
CTCAGGTTTGACCTCCCATT+TGG + chr5_4:68295876-68295895 Msa0866550:intron 50.0%
ACAAGAGATGCCAAGGTGGA+AGG - chr5_4:68296110-68296129 None:intergenic 50.0%
TTCCACCTTGGCATCTCTTG+TGG + chr5_4:68296109-68296128 Msa0866550:intron 50.0%
TCCACCTTGGCATCTCTTGT+GGG + chr5_4:68296110-68296129 Msa0866550:intron 50.0%
AGAACCCACAAGAGATGCCA+AGG - chr5_4:68296117-68296136 None:intergenic 50.0%
! TGATGGCGTTGAATCTGCTG+AGG + chr5_4:68296181-68296200 Msa0866550:CDS 50.0%
TTGGCCATCGGTCTTAACAC+GGG + chr5_4:68296456-68296475 Msa0866550:intron 50.0%
AGAACCCGTGTTAAGACCGA+TGG - chr5_4:68296463-68296482 None:intergenic 50.0%
GGACTTCTCTCCTGTAGATG+TGG + chr5_4:68296634-68296653 Msa0866550:CDS 50.0%
AGCAAATTGGATGCAGGACC+AGG - chr5_4:68296713-68296732 None:intergenic 50.0%
! GGTCCTGCATCCAATTTGCT+TGG + chr5_4:68296713-68296732 Msa0866550:CDS 50.0%
AGCCCAAGCAAATTGGATGC+AGG - chr5_4:68296719-68296738 None:intergenic 50.0%
! CCAATTTGCTTGGGCTCATG+GGG + chr5_4:68296723-68296742 Msa0866550:CDS 50.0%
! CAATTTGCTTGGGCTCATGG+GGG + chr5_4:68296724-68296743 Msa0866550:CDS 50.0%
! ACCAGGATCTTTTTCCCGGA+AGG + chr5_4:68296884-68296903 Msa0866550:three_prime_UTR 50.0%
ACCTTCCGGGAAAAAGATCC+TGG - chr5_4:68296888-68296907 None:intergenic 50.0%
CGACTATGTGACTACCTTCC+GGG - chr5_4:68296901-68296920 None:intergenic 50.0%
CCGACTATGTGACTACCTTC+CGG - chr5_4:68296902-68296921 None:intergenic 50.0%
CCGGAAGGTAGTCACATAGT+CGG + chr5_4:68296899-68296918 Msa0866550:three_prime_UTR 50.0%
CACATAGTCGGCTGTTAACC+AGG + chr5_4:68296911-68296930 Msa0866550:three_prime_UTR 50.0%
CTGGCAGATATCCCTTCTGT+AGG - chr5_4:68297137-68297156 None:intergenic 50.0%
CTACAGAAGGGATATCTGCC+AGG + chr5_4:68297135-68297154 Msa0866550:three_prime_UTR 50.0%
! GGATATCTGCCAGGTATTGC+TGG + chr5_4:68297144-68297163 Msa0866550:three_prime_UTR 50.0%
! ACAAAAGGCCGGCTTTGGCA+AGG - chr5_4:68289672-68289691 None:intergenic 55.0%
GGCAACAAAACCCATACCCG+TGG + chr5_4:68290658-68290677 Msa0866550:intron 55.0%
TAGTTCGCGTGGGTAACCAC+GGG - chr5_4:68290677-68290696 None:intergenic 55.0%
!! CGGGTTTTCCCCGTTTTGAC+TGG + chr5_4:68290709-68290728 Msa0866550:intron 55.0%
!! GGGACGGGTAACGGGTATAT+AGG + chr5_4:68290778-68290797 Msa0866550:intron 55.0%
GTTTGGGTATGGGTTCGAGG+TGG - chr5_4:68290807-68290826 None:intergenic 55.0%
! TTCGGGACGGGTTTGGGTAT+GGG - chr5_4:68290817-68290836 None:intergenic 55.0%
! ATTCGGGACGGGTTTGGGTA+TGG - chr5_4:68290818-68290837 None:intergenic 55.0%
! TCTGCATTCGGGACGGGTTT+GGG - chr5_4:68290823-68290842 None:intergenic 55.0%
! TTCTGCATTCGGGACGGGTT+TGG - chr5_4:68290824-68290843 None:intergenic 55.0%
! ATGCGAGGATGGTGATGAGG+CGG + chr5_4:68291041-68291060 Msa0866550:intron 55.0%
CATCCTCGTTGGGTATGGGT+AGG + chr5_4:68291107-68291126 Msa0866550:intron 55.0%
TACCCTACCCATACCCAACG+AGG - chr5_4:68291113-68291132 None:intergenic 55.0%
AAGAATCGGGTATGGGGACG+GGG + chr5_4:68291147-68291166 Msa0866550:intron 55.0%
TGGCAGCTAGGCATGGCAAT+GGG - chr5_4:68291198-68291217 None:intergenic 55.0%
ATGGCAGCTAGGCATGGCAA+TGG - chr5_4:68291199-68291218 None:intergenic 55.0%
GTTGGGGTGACTCTCCAATG+TGG - chr5_4:68291492-68291511 None:intergenic 55.0%
! CGCGTTTTACGCGTGACTTG+GGG - chr5_4:68291871-68291890 None:intergenic 55.0%
CACAGTCGATGCTTCCTGAG+CGG + chr5_4:68291997-68292016 Msa0866550:intron 55.0%
GGAGAAGAGAGAAACCGCTC+AGG - chr5_4:68292014-68292033 None:intergenic 55.0%
CGGTTACGTACCGTATCGAG+TGG + chr5_4:68292103-68292122 Msa0866550:intron 55.0%
TTACTGGGTGAGTCACGACC+AGG - chr5_4:68292300-68292319 None:intergenic 55.0%
TAAACTGCCCCCTGCTTGGA+AGG + chr5_4:68292986-68293005 Msa0866550:intron 55.0%
! CTTGAGCCGGTCTAGTGGAT+GGG - chr5_4:68293352-68293371 None:intergenic 55.0%
AAGTGAGCCTGAGCTTGAGC+CGG - chr5_4:68293365-68293384 None:intergenic 55.0%
ATTCTGGTGCAGCGCCTCAT+TGG + chr5_4:68294371-68294390 Msa0866550:intron 55.0%
GGGGCTGTCTAGCCTATGTA+AGG + chr5_4:68294515-68294534 Msa0866550:intron 55.0%
CACTTGACTGAACTGCCTCC+AGG + chr5_4:68294982-68295001 Msa0866550:intron 55.0%
!! CCTATTGGTTTGCAGCCTGG+AGG - chr5_4:68295000-68295019 None:intergenic 55.0%
CCTCCAGGCTGCAAACCAAT+AGG + chr5_4:68294997-68295016 Msa0866550:intron 55.0%
AAGGCACGCCTTGTAGCCAA+AGG + chr5_4:68295075-68295094 Msa0866550:intron 55.0%
ACCCACAAGAGATGCCAAGG+TGG - chr5_4:68296114-68296133 None:intergenic 55.0%
CTGCTGCATGTGATGTTCCC+TGG - chr5_4:68296601-68296620 None:intergenic 55.0%
TCTTCCCAACAAGGGCTTCC+TGG + chr5_4:68296692-68296711 Msa0866550:CDS 55.0%
AGGACCAGGAAGCCCTTGTT+GGG - chr5_4:68296699-68296718 None:intergenic 55.0%
CCCCATGAGCCCAAGCAAAT+TGG - chr5_4:68296726-68296745 None:intergenic 55.0%
! GCCAAAGCCGGCCTTTTGTC+CGG + chr5_4:68289673-68289692 Msa0866550:intron 60.0%
CTCGTTGCCGGACAAAAGGC+CGG - chr5_4:68289683-68289702 None:intergenic 60.0%
! GGCCTTTTGTCCGGCAACGA+GGG + chr5_4:68289682-68289701 Msa0866550:intron 60.0%
TGCCCTCGTTGCCGGACAAA+AGG - chr5_4:68289687-68289706 None:intergenic 60.0%
GCGTGGGTAACCACGGGTAT+GGG - chr5_4:68290671-68290690 None:intergenic 60.0%
CACGGGTATGGGACGGGTAA+CGG + chr5_4:68290769-68290788 Msa0866550:intron 60.0%
ACGGGTATGGGACGGGTAAC+GGG + chr5_4:68290770-68290789 Msa0866550:intron 60.0%
CGGGTTTGGGTATGGGTTCG+AGG - chr5_4:68290810-68290829 None:intergenic 60.0%
! TGCGAGGATGGTGATGAGGC+GGG + chr5_4:68291042-68291061 Msa0866550:intron 60.0%
ATACCCGAATCCGTCGGGGA+CGG + chr5_4:68291066-68291085 Msa0866550:intron 60.0%
AGCTAGGCATGGCAATGGGG+CGG - chr5_4:68291194-68291213 None:intergenic 60.0%
GGCAGCTAGGCATGGCAATG+GGG - chr5_4:68291197-68291216 None:intergenic 60.0%
TGCCATGCCTAGCTGCCATC+CGG + chr5_4:68291200-68291219 Msa0866550:intron 60.0%
GTCAATCCCGGATGGCAGCT+AGG - chr5_4:68291210-68291229 None:intergenic 60.0%
TAAGGGTGGGGTGACCTCCA+AGG + chr5_4:68291527-68291546 Msa0866550:intron 60.0%
AAGGGTGGGGTGACCTCCAA+GGG + chr5_4:68291528-68291547 Msa0866550:intron 60.0%
! ACCTCCAAGGGTGTGCCCTT+GGG + chr5_4:68291540-68291559 Msa0866550:intron 60.0%
!! GGTGCTGTTCTGAAGCCTGC+TGG + chr5_4:68293158-68293177 Msa0866550:intron 60.0%
GCTTGAGCCGGTCTAGTGGA+TGG - chr5_4:68293353-68293372 None:intergenic 60.0%
CTGAGCTTGAGCCGGTCTAG+TGG - chr5_4:68293357-68293376 None:intergenic 60.0%
! CACTAGACCGGCTCAAGCTC+AGG + chr5_4:68293355-68293374 Msa0866550:intron 60.0%
TGGTGCAGCGCCTCATTGGT+GGG + chr5_4:68294375-68294394 Msa0866550:intron 60.0%
GTAGTTTGACCAGCGTGGGC+AGG + chr5_4:68296491-68296510 Msa0866550:intron 60.0%
CAGGACCAGGAAGCCCTTGT+TGG - chr5_4:68296700-68296719 None:intergenic 60.0%
! GCCGGACAAAAGGCCGGCTT+TGG - chr5_4:68289677-68289696 None:intergenic 65.0%
! CGGCCTTTTGTCCGGCAACG+AGG + chr5_4:68289681-68289700 Msa0866550:intron 65.0%
CGCGTGGGTAACCACGGGTA+TGG - chr5_4:68290672-68290691 None:intergenic 65.0%
! GCGAGGATGGTGATGAGGCG+GGG + chr5_4:68291043-68291062 Msa0866550:intron 65.0%
GCGGGGATACCCGAATCCGT+CGG + chr5_4:68291060-68291079 Msa0866550:intron 65.0%
CGGGGATACCCGAATCCGTC+GGG + chr5_4:68291061-68291080 Msa0866550:intron 65.0%
GGGGATACCCGAATCCGTCG+GGG + chr5_4:68291062-68291081 Msa0866550:intron 65.0%
TACCCGAATCCGTCGGGGAC+GGG + chr5_4:68291067-68291086 Msa0866550:intron 65.0%
! ATCCCCGTCCCCGACGGATT+CGG - chr5_4:68291073-68291092 None:intergenic 65.0%
AATCCGTCGGGGACGGGGAT+GGG + chr5_4:68291073-68291092 Msa0866550:intron 65.0%
CTAGGCATGGCAATGGGGCG+GGG - chr5_4:68291192-68291211 None:intergenic 65.0%
GCTAGGCATGGCAATGGGGC+GGG - chr5_4:68291193-68291212 None:intergenic 65.0%
GCCATGCCTAGCTGCCATCC+GGG + chr5_4:68291201-68291220 Msa0866550:intron 65.0%
TCCCGGATGGCAGCTAGGCA+TGG - chr5_4:68291205-68291224 None:intergenic 65.0%
! GACCTCCAAGGGTGTGCCCT+TGG + chr5_4:68291539-68291558 Msa0866550:intron 65.0%
! CCTCCAAGGGTGTGCCCTTG+GGG + chr5_4:68291541-68291560 Msa0866550:intron 65.0%
! GTACCCCAAGGGCACACCCT+TGG - chr5_4:68291547-68291566 None:intergenic 65.0%
CTGGTGCAGCGCCTCATTGG+TGG + chr5_4:68294374-68294393 Msa0866550:intron 65.0%
GGTGCAGCGCCTCATTGGTG+GGG + chr5_4:68294376-68294395 Msa0866550:intron 65.0%
GTGCAGCGCCTCATTGGTGG+GGG + chr5_4:68294377-68294396 Msa0866550:intron 65.0%
TGCAGCGCCTCATTGGTGGG+GGG + chr5_4:68294378-68294397 Msa0866550:intron 65.0%
ACCCGAATCCGTCGGGGACG+GGG + chr5_4:68291068-68291087 Msa0866550:intron 70.0%
! TCCCCGTCCCCGACGGATTC+GGG - chr5_4:68291072-68291091 None:intergenic 70.0%
GAATCCGTCGGGGACGGGGA+TGG + chr5_4:68291072-68291091 Msa0866550:intron 70.0%
ATCCGTCGGGGACGGGGATG+GGG + chr5_4:68291074-68291093 Msa0866550:intron 70.0%
AACCCCATCCCCGTCCCCGA+CGG - chr5_4:68291079-68291098 None:intergenic 70.0%
CATGGCAATGGGGCGGGGTG+GGG - chr5_4:68291187-68291206 None:intergenic 70.0%
GCATGGCAATGGGGCGGGGT+GGG - chr5_4:68291188-68291207 None:intergenic 70.0%
! CCCCAAGGGCACACCCTTGG+AGG - chr5_4:68291544-68291563 None:intergenic 70.0%
CCACGACCCAAGCCCAAGCC+CGG - chr5_4:68291647-68291666 None:intergenic 70.0%
CGGGCTTGGGCTTGGGTCGT+GGG + chr5_4:68291645-68291664 Msa0866550:intron 70.0%
TGGGCTTGGGTCGTGGGTCG+TGG + chr5_4:68291651-68291670 Msa0866550:intron 70.0%
GGGCTTGGGTCGTGGGTCGT+GGG + chr5_4:68291652-68291671 Msa0866550:intron 70.0%
CAATGGGGCGGGGTGGGGAC+GGG - chr5_4:68291182-68291201 None:intergenic 75.0%
GCAATGGGGCGGGGTGGGGA+CGG - chr5_4:68291183-68291202 None:intergenic 75.0%
GGCATGGCAATGGGGCGGGG+TGG - chr5_4:68291189-68291208 None:intergenic 75.0%
CGACGACGACGCCGTCCGAC+CGG + chr5_4:68291616-68291635 Msa0866550:intron 75.0%
ACCCAAGCCCAAGCCCGGCC+CGG - chr5_4:68291642-68291661 None:intergenic 75.0%
CCGGGCTTGGGCTTGGGTCG+TGG + chr5_4:68291644-68291663 Msa0866550:intron 75.0%
CAGCGTGGGCAGGCACCTGC+CGG + chr5_4:68296501-68296520 Msa0866550:intron 75.0%
AGCGTGGGCAGGCACCTGCC+GGG + chr5_4:68296502-68296521 Msa0866550:intron 75.0%
! GACGACGCCGTCCGACCGGC+CGG + chr5_4:68291620-68291639 Msa0866550:intron 80.0%
! ACGACGCCGTCCGACCGGCC+GGG + chr5_4:68291621-68291640 Msa0866550:intron 80.0%
! AAGCCCAAGCCCGGCCCGGC+CGG - chr5_4:68291638-68291657 None:intergenic 80.0%
! GCCGGGCCGGGCTTGGGCTT+GGG + chr5_4:68291638-68291657 Msa0866550:intron 80.0%
! CGGCAGGTGCCTGCCCACGC+TGG - chr5_4:68296503-68296522 None:intergenic 80.0%
! CCAAGCCCGGCCCGGCCGGT+CGG - chr5_4:68291634-68291653 None:intergenic 85.0%
! CGACCGGCCGGGCCGGGCTT+GGG + chr5_4:68291632-68291651 Msa0866550:intron 85.0%
! GGCCGGGCCGGGCTTGGGCT+TGG + chr5_4:68291637-68291656 Msa0866550:intron 85.0%
! CGCCGTCCGACCGGCCGGGC+CGG + chr5_4:68291625-68291644 Msa0866550:intron 90.0%
! GCCGTCCGACCGGCCGGGCC+GGG + chr5_4:68291626-68291645 Msa0866550:intron 90.0%
! GCCCGGCCCGGCCGGTCGGA+CGG - chr5_4:68291630-68291649 None:intergenic 90.0%
! CCGACCGGCCGGGCCGGGCT+TGG + chr5_4:68291631-68291650 Msa0866550:intron 90.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 68289091 68297190 68289091 ID=Msa0866550;Name=Msa0866550
chr5_4 mRNA 68289091 68297190 68289091 ID=Msa0866550-mRNA-1;Parent=Msa0866550;Name=Msa0866550-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.33|0.5|0.5|0.33|0.75|4|409|119
chr5_4 exon 68289091 68289096 68289091 ID=Msa0866550-mRNA-1:exon:21615;Parent=Msa0866550-mRNA-1
chr5_4 exon 68290232 68290238 68290232 ID=Msa0866550-mRNA-1:exon:21616;Parent=Msa0866550-mRNA-1
chr5_4 exon 68296162 68296328 68296162 ID=Msa0866550-mRNA-1:exon:21617;Parent=Msa0866550-mRNA-1
chr5_4 exon 68296602 68297190 68296602 ID=Msa0866550-mRNA-1:exon:21618;Parent=Msa0866550-mRNA-1
chr5_4 CDS 68289091 68289096 68289091 ID=Msa0866550-mRNA-1:cds;Parent=Msa0866550-mRNA-1
chr5_4 CDS 68290232 68290238 68290232 ID=Msa0866550-mRNA-1:cds;Parent=Msa0866550-mRNA-1
chr5_4 CDS 68296162 68296328 68296162 ID=Msa0866550-mRNA-1:cds;Parent=Msa0866550-mRNA-1
chr5_4 CDS 68296602 68296781 68296602 ID=Msa0866550-mRNA-1:cds;Parent=Msa0866550-mRNA-1
chr5_4 three_prime_UTR 68296782 68297190 68296782 ID=Msa0866550-mRNA-1:three_prime_utr;Parent=Msa0866550-mRNA-1
Gene Sequence

>Msa0866550

ATGAACATTATTGATGATGATTCTGACGAGAGTGATGGCGTTGAATCTGCTGAGGATAATGATGATGAAGAGGATACTTTCGTGCAGTCTTATTCTGATGCTATGAATGAACAACTAAAGGCAACGACCCTTCAGAAAAGTTTTGTTCGTGCTAATGAACAAATTCCAAAGAAGGATGAGGGAACATCACATGCAGCAGAAGATATGGATGAGGACTTCTCTCCTGTAGATGTGGATGTAAATTTAGTAAAAAGCTTGCTTGATTCCTTTTCTTCCCAACAAGGGCTTCCTGGTCCTGCATCCAATTTGCTTGGGCTCATGGGGGTGCAGTTCCCACAAGATGCTAAGAAGGGCAAGTGA
Protein sequence

>Msa0866550

MNIIDDDSDESDGVESAEDNDDEEDTFVQSYSDAMNEQLKATTLQKSFVRANEQIPKKDEGTSHAAEDMDEDFSPVDVDVNLVKSLLDSFSSQQGLPGPASNLLGLMGVQFPQDAKKGK*