AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0391430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0391430 MtrunA17_Chr3g0098611 96.599 147 5 0 1 147 1 147 1.58e-106 300
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0391430 AT5G54855.1 68.493 146 46 0 1 146 1 146 3.07e-73 216

Find 47 sgRNAs with CRISPR-Local

Find 526 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGATGATGGTGTTTGTTT+TGG 0.243628 3_2:+3145671 Msa0391430:CDS
CGTCTTGGTGGTGGTAGTTC+GGG 0.246569 3_2:+3151537 Msa0391430:CDS
TTTGTCCCTAACGAAATATT+TGG 0.254410 3_2:+3145488 None:intergenic
TGATAGAAAATCATTGTAAA+TGG 0.285973 3_2:+3151827 Msa0391430:three_prime_UTR
GTTTGTGGTGATTCTTCTCT+TGG 0.332875 3_2:+3145741 Msa0391430:CDS
TCGTCTTGGTGGTGGTAGTT+CGG 0.336867 3_2:+3151536 Msa0391430:CDS
CGGCGAAGTTCTAAATTATC+AGG 0.338733 3_2:+3151404 Msa0391430:CDS
TGTTAATCATGACTATTCAT+AGG 0.382659 3_2:-3151936 None:intergenic
CCTTCAAGAACATGATCTTC+AGG 0.398537 3_2:-3145765 None:intergenic
ATGTTTATGCAGGAAACAAT+AGG 0.408789 3_2:-3151970 None:intergenic
ATTTAGAACTTCGCCGGACT+TGG 0.414951 3_2:-3151397 None:intergenic
TTCAGTTACAATCATCCATC+GGG 0.416663 3_2:+3151567 Msa0391430:CDS
ATTGATTGTGTTGTTGATGA+TGG 0.430127 3_2:+3145659 Msa0391430:CDS
CCTGAAGATCATGTTCTTGA+AGG 0.449881 3_2:+3145765 Msa0391430:CDS
CATGAGCACTGCACTCGTCT+TGG 0.451233 3_2:+3151522 Msa0391430:CDS
TATGAACACATGCAAATGAA+TGG 0.465890 3_2:+3151882 Msa0391430:three_prime_UTR
CATGATTAACCTATCTAAGA+TGG 0.482710 3_2:-3151855 None:intergenic
TCAGGCATTTACAGATGCTA+AGG 0.492192 3_2:+3151422 Msa0391430:CDS
CAGTATGTTGGAACATTGAC+AGG 0.497172 3_2:-3151624 None:intergenic
GTTCTTTGCATAACCAAGTC+CGG 0.497448 3_2:+3151384 Msa0391430:CDS
TTGGGTGTAAGTGGTTGGAC+TGG 0.499194 3_2:+3145690 Msa0391430:CDS
CAAGACGAGTGCAGTGCTCA+TGG 0.501517 3_2:-3151521 None:intergenic
ATGGTATTGCCATCTTAGAT+AGG 0.508832 3_2:+3151846 Msa0391430:three_prime_UTR
AGAGTTGTTTGTGATGTTTG+TGG 0.528736 3_2:+3145726 Msa0391430:CDS
TGCTCATGGAAACTACTGAT+TGG 0.530403 3_2:-3151507 None:intergenic
CAGGCATTTACAGATGCTAA+GGG 0.533023 3_2:+3151423 Msa0391430:CDS
GAGCACTGCACTCGTCTTGG+TGG 0.534296 3_2:+3151525 Msa0391430:CDS
GCATCCCAACGATCACTCTC+AGG 0.535746 3_2:-3151471 None:intergenic
CTGATAATTTAGAACTTCGC+CGG 0.538086 3_2:-3151403 None:intergenic
CACTGCACTCGTCTTGGTGG+TGG 0.544640 3_2:+3151528 Msa0391430:CDS
ATTCAGTTACAATCATCCAT+CGG 0.553429 3_2:+3151566 Msa0391430:CDS
AATGCCTGAGAGTGATCGTT+GGG 0.564183 3_2:+3151467 Msa0391430:CDS
CAATGCCTGAGAGTGATCGT+TGG 0.565355 3_2:+3151466 Msa0391430:CDS
GTCTTGGTGGTGGTAGTTCG+GGG 0.567915 3_2:+3151538 Msa0391430:CDS
ATATATCAGATGCAGTATGT+TGG 0.578522 3_2:-3151636 None:intergenic
AGTGATTCAGCGAGTGTCGG+TGG 0.585112 3_2:+3145532 Msa0391430:five_prime_UTR
CTCAGTGATTCAGCGAGTGT+CGG 0.594439 3_2:+3145529 Msa0391430:five_prime_UTR
GGTTGGACTGGTGAAATTCG+TGG 0.595778 3_2:+3145702 Msa0391430:CDS
ATGTTGGAACATTGACAGGT+TGG 0.603546 3_2:-3151620 None:intergenic
ATTGACAGGTTGGTAAACAA+AGG 0.608179 3_2:-3151610 None:intergenic
ATCAATGAAGCAGAAGATGA+TGG 0.608676 3_2:+3145632 Msa0391430:CDS
AGCCCATAAGCGCAAAAGTG+CGG 0.626874 3_2:+3145575 Msa0391430:five_prime_UTR
AATGAAGCAGAAGATGATGG+TGG 0.643061 3_2:+3145635 Msa0391430:CDS
ACAGCATGTGAATGCCCCGA+TGG 0.652310 3_2:-3151582 None:intergenic
TAATCATGACTATTCATAGG+TGG 0.664580 3_2:-3151933 None:intergenic
AGGCATTTACAGATGCTAAG+GGG 0.710498 3_2:+3151424 Msa0391430:CDS
TCAGTTACAATCATCCATCG+GGG 0.758006 3_2:+3151568 Msa0391430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAATAATATTGAGT+CGG + chr3_2:3149906-3149925 Msa0391430:intron 10.0%
!!! CATTTTAAAAATTAGTAAAT+CGG + chr3_2:3150492-3150511 Msa0391430:intron 10.0%
!!! ATTTTAAAAATTAGTAAATC+GGG + chr3_2:3150493-3150512 Msa0391430:intron 10.0%
!! TAATTTACTCAAATTATTAC+AGG - chr3_2:3145991-3146010 None:intergenic 15.0%
!! ATTTCATTTACAAATAAGTA+GGG + chr3_2:3146103-3146122 Msa0391430:intron 15.0%
!! TAATTTACTCAAATTATTAC+AGG - chr3_2:3145991-3146010 None:intergenic 15.0%
!! ATTTCATTTACAAATAAGTA+GGG + chr3_2:3146103-3146122 Msa0391430:intron 15.0%
!!! TATTTTTAAGGTTATACAAA+GGG - chr3_2:3149855-3149874 None:intergenic 15.0%
!!! ATATTTTTAAGGTTATACAA+AGG - chr3_2:3149856-3149875 None:intergenic 15.0%
!! TAGATACCAATAATAATTTA+AGG + chr3_2:3150903-3150922 Msa0391430:intron 15.0%
!! CTATTTCCTTAAATTATTAT+TGG - chr3_2:3150912-3150931 None:intergenic 15.0%
!! ATTCATGTTAAAATAAATCT+GGG - chr3_2:3151284-3151303 None:intergenic 15.0%
!! TATTCATGTTAAAATAAATC+TGG - chr3_2:3151285-3151304 None:intergenic 15.0%
!!! TTTTGATTGAGTTTATGAAA+TGG + chr3_2:3145833-3145852 Msa0391430:intron 20.0%
!! TTTGATTGAGTTTATGAAAT+GGG + chr3_2:3145834-3145853 Msa0391430:intron 20.0%
!!! GTGAATTCTATATATGATTT+TGG + chr3_2:3145863-3145882 Msa0391430:intron 20.0%
!! GATTTCATTTACAAATAAGT+AGG + chr3_2:3146102-3146121 Msa0391430:intron 20.0%
!! TACGTATTTATGTAAATCTT+AGG + chr3_2:3146814-3146833 Msa0391430:intron 20.0%
!!! TATCAAATTTGCTTCTAAAT+AGG - chr3_2:3147978-3147997 None:intergenic 20.0%
!! GATTTCATTTACAAATAAGT+AGG + chr3_2:3146102-3146121 Msa0391430:intron 20.0%
!! CAAATTATTATTCTTCTATC+GGG - chr3_2:3149010-3149029 None:intergenic 20.0%
!! GCAAATTATTATTCTTCTAT+CGG - chr3_2:3149011-3149030 None:intergenic 20.0%
!!! ATAGAAGAATAATAATTTGC+AGG + chr3_2:3149011-3149030 Msa0391430:intron 20.0%
!!! TAGAAGAATAATAATTTGCA+GGG + chr3_2:3149012-3149031 Msa0391430:intron 20.0%
!! ATATCTTTCAACTTCTTAAA+TGG - chr3_2:3150066-3150085 None:intergenic 20.0%
!!! TCACTTTTAATTTTTGTTTC+TGG + chr3_2:3150219-3150238 Msa0391430:intron 20.0%
!! TAAAGAATGAGATATTGTAA+TGG - chr3_2:3150753-3150772 None:intergenic 20.0%
!! AATATCTCATTCTTTAAGTA+AGG + chr3_2:3150757-3150776 Msa0391430:intron 20.0%
!! TTTAAACAATGATACAACAA+AGG + chr3_2:3150792-3150811 Msa0391430:intron 20.0%
!!! AAAAACCATTTCAAACTTTT+TGG + chr3_2:3151237-3151256 Msa0391430:intron 20.0%
!! TTAAACCAAAAAGTTTGAAA+TGG - chr3_2:3151245-3151264 None:intergenic 20.0%
!! TTCATGTTAAAATAAATCTG+GGG - chr3_2:3151283-3151302 None:intergenic 20.0%
!!! TTTCATGATCTAATTTTACT+AGG - chr3_2:3151770-3151789 None:intergenic 20.0%
!!! TTATTTTATCAGATTGCATA+TGG + chr3_2:3151791-3151810 Msa0391430:three_prime_UTR 20.0%
!! TGATAGAAAATCATTGTAAA+TGG + chr3_2:3151827-3151846 Msa0391430:three_prime_UTR 20.0%
!! TTTTGGTAGAGTTTATGAAA+TGG + chr3_2:3145880-3145899 Msa0391430:intron 25.0%
! TTTGGTAGAGTTTATGAAAT+GGG + chr3_2:3145881-3145900 Msa0391430:intron 25.0%
!!! CATTTTGGTGGAAAATTATA+AGG - chr3_2:3145950-3145969 None:intergenic 25.0%
!! TTATGTGTCAGTATTCATTT+TGG - chr3_2:3145965-3145984 None:intergenic 25.0%
! TATAATCACCTCACTTTATT+AGG + chr3_2:3146235-3146254 Msa0391430:intron 25.0%
!! TTGTTACTCCATAAAGATTT+TGG + chr3_2:3146329-3146348 Msa0391430:intron 25.0%
! TTACTGAACCAAAATCTTTA+TGG - chr3_2:3146340-3146359 None:intergenic 25.0%
! CTTTATGGGGAAATATTAAT+AGG + chr3_2:3146468-3146487 Msa0391430:intron 25.0%
! AAGTTGTGTGTTAAATGTAT+TGG - chr3_2:3146579-3146598 None:intergenic 25.0%
! GTATTTATGTAAATCTTAGG+CGG + chr3_2:3146817-3146836 Msa0391430:intron 25.0%
! TATTCCTAAGAAAGACTTAA+TGG - chr3_2:3147073-3147092 None:intergenic 25.0%
! AATAAAGTAAAAAGTGAGAG+AGG - chr3_2:3147524-3147543 None:intergenic 25.0%
! ATCAAAACCATACCTAATTT+CGG - chr3_2:3147565-3147584 None:intergenic 25.0%
!!! CATTTTGGTGGAAAATTATA+AGG - chr3_2:3145950-3145969 None:intergenic 25.0%
!! TTATGTGTCAGTATTCATTT+TGG - chr3_2:3145965-3145984 None:intergenic 25.0%
! TATAATCACCTCACTTTATT+AGG + chr3_2:3146235-3146254 Msa0391430:intron 25.0%
!! TTGTTACTCCATAAAGATTT+TGG + chr3_2:3146329-3146348 Msa0391430:intron 25.0%
! TTACTGAACCAAAATCTTTA+TGG - chr3_2:3146340-3146359 None:intergenic 25.0%
! CTTTATGGGGAAATATTAAT+AGG + chr3_2:3146468-3146487 Msa0391430:intron 25.0%
! AAGTTGTGTGTTAAATGTAT+TGG - chr3_2:3146579-3146598 None:intergenic 25.0%
!! AGAAGAATAATAATTTGCAG+GGG + chr3_2:3149013-3149032 Msa0391430:intron 25.0%
! TAAATAGTGTATAAGAGAGA+GGG - chr3_2:3149324-3149343 None:intergenic 25.0%
! GGAAAAGAGAATATTTCAAA+GGG - chr3_2:3149382-3149401 None:intergenic 25.0%
! AGGAAAAGAGAATATTTCAA+AGG - chr3_2:3149383-3149402 None:intergenic 25.0%
! GATATGTAATAACAGTATAG+CGG - chr3_2:3149691-3149710 None:intergenic 25.0%
! GCTATACTGTTATTACATAT+CGG + chr3_2:3149690-3149709 Msa0391430:intron 25.0%
! CTATACTGTTATTACATATC+GGG + chr3_2:3149691-3149710 Msa0391430:intron 25.0%
!! TAATGATGATGTTAGGAAAT+AGG + chr3_2:3150109-3150128 Msa0391430:intron 25.0%
! AGTTCAATACAACTAATAAC+CGG - chr3_2:3150178-3150197 None:intergenic 25.0%
!!! TGAGATTTTGAGTTTTATGT+CGG + chr3_2:3150298-3150317 Msa0391430:intron 25.0%
! GTTAATGTTTATTTCACAAG+TGG + chr3_2:3150458-3150477 Msa0391430:intron 25.0%
!!! CATACAAATGAGTCATTTTT+AGG - chr3_2:3150563-3150582 None:intergenic 25.0%
!! ATTTGCGTATTTAACCATTT+TGG + chr3_2:3150712-3150731 Msa0391430:intron 25.0%
! TTCCTATTAAAACAATGAAG+TGG + chr3_2:3151327-3151346 Msa0391430:intron 25.0%
!!! AACCACTTCATTGTTTTAAT+AGG - chr3_2:3151332-3151351 None:intergenic 25.0%
! TGTTAATCATGACTATTCAT+AGG - chr3_2:3151939-3151958 None:intergenic 25.0%
! ATTGATTGTGTTGTTGATGA+TGG + chr3_2:3145659-3145678 Msa0391430:CDS 30.0%
!!! TTGATGATGGTGTTTGTTTT+GGG + chr3_2:3145672-3145691 Msa0391430:CDS 30.0%
ATCTTTGTCTCTCTCTAATT+AGG + chr3_2:3145789-3145808 Msa0391430:intron 30.0%
ATATCCAACACAAACTCAAT+TGG - chr3_2:3146030-3146049 None:intergenic 30.0%
AGTTGATTGCAAGAACATTA+GGG - chr3_2:3146450-3146469 None:intergenic 30.0%
! AAGTTGATTGCAAGAACATT+AGG - chr3_2:3146451-3146470 None:intergenic 30.0%
TGTTCTTGCAATCAACTTTA+TGG + chr3_2:3146453-3146472 Msa0391430:intron 30.0%
GTTCTTGCAATCAACTTTAT+GGG + chr3_2:3146454-3146473 Msa0391430:intron 30.0%
TTCTTGCAATCAACTTTATG+GGG + chr3_2:3146455-3146474 Msa0391430:intron 30.0%
CAGTCTTTAAGCACTTTAAA+TGG - chr3_2:3146617-3146636 None:intergenic 30.0%
CTTTCTTAGGAATATCATGA+CGG + chr3_2:3147079-3147098 Msa0391430:intron 30.0%
TTAGGAAAAAAGAAGAAGCT+TGG - chr3_2:3147439-3147458 None:intergenic 30.0%
! ACATTTCTATTTTCCAACAC+AGG + chr3_2:3147488-3147507 Msa0391430:intron 30.0%
!! AACTGGGATACTTTTTATCA+AGG + chr3_2:3147694-3147713 Msa0391430:intron 30.0%
!! ACTGGGATACTTTTTATCAA+GGG + chr3_2:3147695-3147714 Msa0391430:intron 30.0%
! ACTTTTTATCAAGGGTTACA+CGG + chr3_2:3147703-3147722 Msa0391430:intron 30.0%
!! TTTTGCAGAAGAAGTTTTAG+CGG + chr3_2:3147918-3147937 Msa0391430:intron 30.0%
ATATCCAACACAAACTCAAT+TGG - chr3_2:3146030-3146049 None:intergenic 30.0%
AGTTGATTGCAAGAACATTA+GGG - chr3_2:3146450-3146469 None:intergenic 30.0%
! AAGTTGATTGCAAGAACATT+AGG - chr3_2:3146451-3146470 None:intergenic 30.0%
TGTTCTTGCAATCAACTTTA+TGG + chr3_2:3146453-3146472 Msa0391430:intron 30.0%
GTTCTTGCAATCAACTTTAT+GGG + chr3_2:3146454-3146473 Msa0391430:intron 30.0%
TTCTTGCAATCAACTTTATG+GGG + chr3_2:3146455-3146474 Msa0391430:intron 30.0%
CAGTCTTTAAGCACTTTAAA+TGG - chr3_2:3146617-3146636 None:intergenic 30.0%
! GAAGAATAATAATTTGCAGG+GGG + chr3_2:3149014-3149033 Msa0391430:intron 30.0%
AAATTCGTTGTTTAAGTGCA+GGG - chr3_2:3149068-3149087 None:intergenic 30.0%
TACTTGAAATCTACATCCAA+CGG - chr3_2:3149144-3149163 None:intergenic 30.0%
GTAAATAGTGTATAAGAGAG+AGG - chr3_2:3149325-3149344 None:intergenic 30.0%
TTACACAAAATCCTTCTACT+TGG + chr3_2:3149341-3149360 Msa0391430:intron 30.0%
TACACAAAATCCTTCTACTT+GGG + chr3_2:3149342-3149361 Msa0391430:intron 30.0%
! GTTTTGTCTTCACTACTATT+AGG - chr3_2:3149520-3149539 None:intergenic 30.0%
GTAGTGAAGACAAAACTTAT+TGG + chr3_2:3149524-3149543 Msa0391430:intron 30.0%
!!! GCATAAACCTTTTAAAACCT+TGG + chr3_2:3149638-3149657 Msa0391430:intron 30.0%
! GTTATTACATATCGGGATTT+TGG + chr3_2:3149698-3149717 Msa0391430:intron 30.0%
ATCCGTTATTGCTTAAATAG+CGG + chr3_2:3149799-3149818 Msa0391430:intron 30.0%
TTCCGCTATTTAAGCAATAA+CGG - chr3_2:3149804-3149823 None:intergenic 30.0%
!! CAGCTCACATGATATTTTTA+AGG - chr3_2:3149867-3149886 None:intergenic 30.0%
AGTGAAGAGATAAGATAGAA+AGG - chr3_2:3150004-3150023 None:intergenic 30.0%
! ATGAGGATAATGATGATGTT+AGG + chr3_2:3150102-3150121 Msa0391430:intron 30.0%
TACTTATATCAACCACTTTG+TGG + chr3_2:3150362-3150381 Msa0391430:intron 30.0%
CAAGACAGTGTGATTAATAA+CGG - chr3_2:3150431-3150450 None:intergenic 30.0%
!! AGTATTGATTCTATGACTTG+TGG + chr3_2:3150634-3150653 Msa0391430:intron 30.0%
! GACTCTTGTCTTATTGTATT+TGG + chr3_2:3150673-3150692 Msa0391430:intron 30.0%
AATGGTTAAATACGCAAATG+TGG - chr3_2:3150711-3150730 None:intergenic 30.0%
!! AAATAGTCATCCTCTAGAAT+TGG + chr3_2:3150831-3150850 Msa0391430:intron 30.0%
ATGACTTAAACCAATTCTAG+AGG - chr3_2:3150844-3150863 None:intergenic 30.0%
TATATGTAGCATCAACACTT+AGG - chr3_2:3151012-3151031 None:intergenic 30.0%
!!! AACCCTTTTGCTATTATAGA+AGG + chr3_2:3151031-3151050 Msa0391430:intron 30.0%
!!! ACCCTTTTGCTATTATAGAA+GGG + chr3_2:3151032-3151051 Msa0391430:intron 30.0%
TCCCTTCTATAATAGCAAAA+GGG - chr3_2:3151036-3151055 None:intergenic 30.0%
TTCCCTTCTATAATAGCAAA+AGG - chr3_2:3151037-3151056 None:intergenic 30.0%
!!! TTTTGCTATTATAGAAGGGA+AGG + chr3_2:3151036-3151055 Msa0391430:intron 30.0%
ATCAGTTACAGATCTATTGT+AGG + chr3_2:3151105-3151124 Msa0391430:intron 30.0%
TGCAGTGTAACAAGATATTA+CGG - chr3_2:3151175-3151194 None:intergenic 30.0%
ATAACAGCACAAAAGTTAGA+GGG - chr3_2:3151199-3151218 None:intergenic 30.0%
!! TAACTTTTGTGCTGTTATGA+AGG + chr3_2:3151201-3151220 Msa0391430:intron 30.0%
ATTCAGTTACAATCATCCAT+CGG + chr3_2:3151566-3151585 Msa0391430:CDS 30.0%
ATATATCAGATGCAGTATGT+TGG - chr3_2:3151639-3151658 None:intergenic 30.0%
!!! CTATACTGACTTTTGTTGTT+TGG + chr3_2:3151660-3151679 Msa0391430:three_prime_UTR 30.0%
CATGATTAACCTATCTAAGA+TGG - chr3_2:3151858-3151877 None:intergenic 30.0%
TATGAACACATGCAAATGAA+TGG + chr3_2:3151882-3151901 Msa0391430:three_prime_UTR 30.0%
TAATCATGACTATTCATAGG+TGG - chr3_2:3151936-3151955 None:intergenic 30.0%
ATCAATGAAGCAGAAGATGA+TGG + chr3_2:3145632-3145651 Msa0391430:CDS 35.0%
!!! GTTGATGATGGTGTTTGTTT+TGG + chr3_2:3145671-3145690 Msa0391430:CDS 35.0%
AGAGTTGTTTGTGATGTTTG+TGG + chr3_2:3145726-3145745 Msa0391430:CDS 35.0%
! TGTGTCAGTATTCATTTTGG+TGG - chr3_2:3145962-3145981 None:intergenic 35.0%
GTAACCAATTGAGTTTGTGT+TGG + chr3_2:3146023-3146042 Msa0391430:intron 35.0%
!!! AAGTAGGGTTTTTGAAGTGT+TGG + chr3_2:3146118-3146137 Msa0391430:intron 35.0%
GATAGCAACCTAATAAAGTG+AGG - chr3_2:3146246-3146265 None:intergenic 35.0%
AAACACTTATGTGCATAGCA+AGG - chr3_2:3146366-3146385 None:intergenic 35.0%
! CAAGTGTTATTCACATAAGC+AGG + chr3_2:3146395-3146414 Msa0391430:intron 35.0%
ATAAGCAGGTTCTTGTTAGA+AGG + chr3_2:3146409-3146428 Msa0391430:intron 35.0%
TAAGCAGGTTCTTGTTAGAA+GGG + chr3_2:3146410-3146429 Msa0391430:intron 35.0%
GTTGATTGCAAGAACATTAG+GGG - chr3_2:3146449-3146468 None:intergenic 35.0%
CCTGTACTTGTCAAAAAGTA+CGG + chr3_2:3146650-3146669 Msa0391430:intron 35.0%
! ACTTGTCAAAAAGTACGGTA+AGG + chr3_2:3146655-3146674 Msa0391430:intron 35.0%
! AAAAGTACGGTAAGGATTCT+AGG + chr3_2:3146663-3146682 Msa0391430:intron 35.0%
AAAGTACGGTAAGGATTCTA+GGG + chr3_2:3146664-3146683 Msa0391430:intron 35.0%
AGGCTATAAATACCACTCTT+GGG - chr3_2:3146745-3146764 None:intergenic 35.0%
AAGGCTATAAATACCACTCT+TGG - chr3_2:3146746-3146765 None:intergenic 35.0%
TGGTATTTATAGCCTTCCTT+GGG + chr3_2:3146750-3146769 Msa0391430:intron 35.0%
TTACTTGGTTTCCAAGCAAT+AGG + chr3_2:3146785-3146804 Msa0391430:intron 35.0%
TACTTGGTTTCCAAGCAATA+GGG + chr3_2:3146786-3146805 Msa0391430:intron 35.0%
! TTTCTAGAAGACCAATAGGT+CGG + chr3_2:3146840-3146859 Msa0391430:intron 35.0%
TAAATCATAGAACGCCCAAA+CGG - chr3_2:3147177-3147196 None:intergenic 35.0%
CGTTCTATGATTTACGCTTA+AGG + chr3_2:3147183-3147202 Msa0391430:intron 35.0%
TTTACGCTTAAGGTTCTACT+TGG + chr3_2:3147193-3147212 Msa0391430:intron 35.0%
! TAAGGTTCTACTTGGAGTTT+TGG + chr3_2:3147201-3147220 Msa0391430:intron 35.0%
!!! CTTTTTTCCTAACTTCCTTC+CGG + chr3_2:3147447-3147466 Msa0391430:intron 35.0%
! CTTTTTATCAAGGGTTACAC+GGG + chr3_2:3147704-3147723 Msa0391430:intron 35.0%
! TTTTTATCAAGGGTTACACG+GGG + chr3_2:3147705-3147724 Msa0391430:intron 35.0%
TTTGCTTCTAAATAGGTCCA+TGG - chr3_2:3147971-3147990 None:intergenic 35.0%
AAATTTGATATCTCCGCTAC+CGG + chr3_2:3147988-3148007 Msa0391430:intron 35.0%
! TGTGTCAGTATTCATTTTGG+TGG - chr3_2:3145962-3145981 None:intergenic 35.0%
GTAACCAATTGAGTTTGTGT+TGG + chr3_2:3146023-3146042 Msa0391430:intron 35.0%
!!! AAGTAGGGTTTTTGAAGTGT+TGG + chr3_2:3146118-3146137 Msa0391430:intron 35.0%
GATAGCAACCTAATAAAGTG+AGG - chr3_2:3146246-3146265 None:intergenic 35.0%
AAACACTTATGTGCATAGCA+AGG - chr3_2:3146366-3146385 None:intergenic 35.0%
! CAAGTGTTATTCACATAAGC+AGG + chr3_2:3146395-3146414 Msa0391430:intron 35.0%
ATAAGCAGGTTCTTGTTAGA+AGG + chr3_2:3146409-3146428 Msa0391430:intron 35.0%
TAAGCAGGTTCTTGTTAGAA+GGG + chr3_2:3146410-3146429 Msa0391430:intron 35.0%
GTTGATTGCAAGAACATTAG+GGG - chr3_2:3146449-3146468 None:intergenic 35.0%
CCTTTACAAATCCAGCAATT+CGG + chr3_2:3148961-3148980 Msa0391430:intron 35.0%
CAAATTCGTTGTTTAAGTGC+AGG - chr3_2:3149069-3149088 None:intergenic 35.0%
CTGCACTTAAACAACGAATT+TGG + chr3_2:3149067-3149086 Msa0391430:intron 35.0%
TTTGGATACCTTGCAATTAC+AGG + chr3_2:3149085-3149104 Msa0391430:intron 35.0%
ATTCACGTAGCTAGATACAT+CGG + chr3_2:3149115-3149134 Msa0391430:intron 35.0%
ACACAAAATCCTTCTACTTG+GGG + chr3_2:3149343-3149362 Msa0391430:intron 35.0%
ATAGTGTTAGAGATCAGCAA+AGG - chr3_2:3149407-3149426 None:intergenic 35.0%
TAACATACTCTCTAGCAAAC+AGG - chr3_2:3149555-3149574 None:intergenic 35.0%
CATAAACTCATTCTCCCAAA+AGG + chr3_2:3149607-3149626 Msa0391430:intron 35.0%
! TTATGCGCATCAAACCTTTT+GGG - chr3_2:3149624-3149643 None:intergenic 35.0%
! TTTATGCGCATCAAACCTTT+TGG - chr3_2:3149625-3149644 None:intergenic 35.0%
!!! CACTGAACCAAGGTTTTAAA+AGG - chr3_2:3149648-3149667 None:intergenic 35.0%
TACTTAACAACACTGAACCA+AGG - chr3_2:3149658-3149677 None:intergenic 35.0%
! GTTCAGTGTTGTTAAGTAAC+CGG + chr3_2:3149660-3149679 Msa0391430:intron 35.0%
AAAGGTTGTTTAGTGATGAG+AGG - chr3_2:3149980-3149999 None:intergenic 35.0%
GAGATAAGATAGAAAGGCAA+AGG - chr3_2:3149998-3150017 None:intergenic 35.0%
TTCACACTAGATAGAACTAC+CGG + chr3_2:3150156-3150175 Msa0391430:intron 35.0%
CGTTATTAATCACACTGTCT+TGG + chr3_2:3150429-3150448 Msa0391430:intron 35.0%
ACTAAATGCTGCTAAAAGAG+CGG - chr3_2:3150617-3150636 None:intergenic 35.0%
ACTATGACTCATCACCAAAA+TGG - chr3_2:3150729-3150748 None:intergenic 35.0%
ACAATGATACAACAAAGGAC+AGG + chr3_2:3150797-3150816 Msa0391430:intron 35.0%
! TGTAACCACATGTTTTGTGT+TGG + chr3_2:3150943-3150962 Msa0391430:intron 35.0%
! CTTAGGATTAAAGGTGTGTT+CGG - chr3_2:3150995-3151014 None:intergenic 35.0%
GCATCAACACTTAGGATTAA+AGG - chr3_2:3151004-3151023 None:intergenic 35.0%
GCAGTGTAACAAGATATTAC+GGG - chr3_2:3151174-3151193 None:intergenic 35.0%
CATAACAGCACAAAAGTTAG+AGG - chr3_2:3151200-3151219 None:intergenic 35.0%
!!! GGTTTTGAATGCTTTGATGT+AGG + chr3_2:3151348-3151367 Msa0391430:intron 35.0%
! CTGATAATTTAGAACTTCGC+CGG - chr3_2:3151406-3151425 None:intergenic 35.0%
TTCAGTTACAATCATCCATC+GGG + chr3_2:3151567-3151586 Msa0391430:CDS 35.0%
!! ATTGACAGGTTGGTAAACAA+AGG - chr3_2:3151613-3151632 None:intergenic 35.0%
ATGGTATTGCCATCTTAGAT+AGG + chr3_2:3151846-3151865 Msa0391430:three_prime_UTR 35.0%
! AATGAAGCAGAAGATGATGG+TGG + chr3_2:3145635-3145654 Msa0391430:CDS 40.0%
!!! GTGTTTGTTTTGGGTGTAAG+TGG + chr3_2:3145681-3145700 Msa0391430:CDS 40.0%
!!! TTGTTTTGGGTGTAAGTGGT+TGG + chr3_2:3145685-3145704 Msa0391430:CDS 40.0%
GTTTGTGGTGATTCTTCTCT+TGG + chr3_2:3145741-3145760 Msa0391430:CDS 40.0%
CCTTCAAGAACATGATCTTC+AGG - chr3_2:3145768-3145787 None:intergenic 40.0%
CCTGAAGATCATGTTCTTGA+AGG + chr3_2:3145765-3145784 Msa0391430:CDS 40.0%
GAGTTATGTTACGATGTCAC+TGG + chr3_2:3146150-3146169 Msa0391430:intron 40.0%
AACTGACAAACTTCCTCCAT+TGG - chr3_2:3146186-3146205 None:intergenic 40.0%
!! CCGTACTTTTTGACAAGTAC+AGG - chr3_2:3146653-3146672 None:intergenic 40.0%
TAGGGTTAGGAATCGTATAC+TGG + chr3_2:3146682-3146701 Msa0391430:intron 40.0%
AGGGTTAGGAATCGTATACT+GGG + chr3_2:3146683-3146702 Msa0391430:intron 40.0%
! GAATCGTATACTGGGGTTTT+TGG + chr3_2:3146691-3146710 Msa0391430:intron 40.0%
! GCTTGATGATTAGATGCCTT+GGG + chr3_2:3146713-3146732 Msa0391430:intron 40.0%
GTGGTATTTATAGCCTTCCT+TGG + chr3_2:3146749-3146768 Msa0391430:intron 40.0%
ACTTGGTTTCCAAGCAATAG+GGG + chr3_2:3146787-3146806 Msa0391430:intron 40.0%
ACGTAAATACCCCTATTGCT+TGG - chr3_2:3146799-3146818 None:intergenic 40.0%
GAGGCCATTAAGTCTTTCTT+AGG + chr3_2:3147066-3147085 Msa0391430:intron 40.0%
! AAGAATACGAAGCGTCTAGA+AGG - chr3_2:3147268-3147287 None:intergenic 40.0%
GTCATTTAGATCTTGACACG+TGG - chr3_2:3147308-3147327 None:intergenic 40.0%
!! GTCTTTTTAAAGGACGCGTT+TGG + chr3_2:3147373-3147392 Msa0391430:intron 40.0%
TAACTTCCTTCCGGTTTAAG+CGG + chr3_2:3147456-3147475 Msa0391430:intron 40.0%
GTAAAAAGTGAGAGAGGATG+AGG - chr3_2:3147518-3147537 None:intergenic 40.0%
TGAGAGTCCGAAATTAGGTA+TGG + chr3_2:3147555-3147574 Msa0391430:intron 40.0%
TGATTAGAGAATGCGATGAG+AGG + chr3_2:3147581-3147600 Msa0391430:intron 40.0%
GATTAGAGAATGCGATGAGA+GGG + chr3_2:3147582-3147601 Msa0391430:intron 40.0%
ATTAGAGAATGCGATGAGAG+GGG + chr3_2:3147583-3147602 Msa0391430:intron 40.0%
TCCGAATGGGGTTATTAACT+GGG + chr3_2:3147678-3147697 Msa0391430:intron 40.0%
TCCCAGTTAATAACCCCATT+CGG - chr3_2:3147682-3147701 None:intergenic 40.0%
ATCTCTACTTGAGTTAACGC+TGG - chr3_2:3147761-3147780 None:intergenic 40.0%
! TGTTTCTTTCTGCCACTTCA+GGG + chr3_2:3147791-3147810 Msa0391430:intron 40.0%
AACCTGGTGATAGCTTAGTA+GGG + chr3_2:3147887-3147906 Msa0391430:intron 40.0%
TCCTTTCTCACGTTTCGAAA+TGG + chr3_2:3148137-3148156 Msa0391430:intron 40.0%
TCCATTTCGAAACGTGAGAA+AGG - chr3_2:3148141-3148160 None:intergenic 40.0%
ACACTCAAAACCCCGAATAA+AGG - chr3_2:3148217-3148236 None:intergenic 40.0%
GAGTTATGTTACGATGTCAC+TGG + chr3_2:3146150-3146169 Msa0391430:intron 40.0%
AACTGACAAACTTCCTCCAT+TGG - chr3_2:3146186-3146205 None:intergenic 40.0%
TGGATTTGTAAAGGACGCTA+GGG - chr3_2:3148955-3148974 None:intergenic 40.0%
CCGAATTGCTGGATTTGTAA+AGG - chr3_2:3148964-3148983 None:intergenic 40.0%
GGTAGAGTACAGAATCTAGA+AGG + chr3_2:3149035-3149054 Msa0391430:intron 40.0%
GTATCTAGCTACGTGAATGT+GGG - chr3_2:3149113-3149132 None:intergenic 40.0%
TGTATCTAGCTACGTGAATG+TGG - chr3_2:3149114-3149133 None:intergenic 40.0%
ATGTAGCTGAGTGAGTGATA+TGG + chr3_2:3149241-3149260 Msa0391430:intron 40.0%
TGTAGCTGAGTGAGTGATAT+GGG + chr3_2:3149242-3149261 Msa0391430:intron 40.0%
ATATGGGAAATCTGTGTGCA+GGG + chr3_2:3149258-3149277 Msa0391430:intron 40.0%
! GTAGGCATTGTTTGCGAATT+TGG - chr3_2:3149287-3149306 None:intergenic 40.0%
AACAACTAACCCCAAGTAGA+AGG - chr3_2:3149355-3149374 None:intergenic 40.0%
TGTTAGAGATCAGCAAAGGA+AGG - chr3_2:3149403-3149422 None:intergenic 40.0%
TGAAATGGAGGGAATGTGAT+TGG - chr3_2:3149439-3149458 None:intergenic 40.0%
CAATGACAAGACAGCTGAAA+TGG - chr3_2:3149454-3149473 None:intergenic 40.0%
!! TATCGTATCGGCTTTCATCA+TGG - chr3_2:3149729-3149748 None:intergenic 40.0%
GCAGAATCGCAATATCGTAT+CGG - chr3_2:3149741-3149760 None:intergenic 40.0%
! TGGCAGTGCATTTTGCATAT+CGG + chr3_2:3149772-3149791 Msa0391430:intron 40.0%
TATTGAGTCGGTGATGAGAT+AGG + chr3_2:3149918-3149937 Msa0391430:intron 40.0%
ATTGAGTCGGTGATGAGATA+GGG + chr3_2:3149919-3149938 Msa0391430:intron 40.0%
CCTCAGAATCAATGTCTTGA+AGG - chr3_2:3150040-3150059 None:intergenic 40.0%
!! CCTTCAAGACATTGATTCTG+AGG + chr3_2:3150037-3150056 Msa0391430:intron 40.0%
! ATCCTCATTTTGCGATAGTG+AGG - chr3_2:3150090-3150109 None:intergenic 40.0%
! AAATAGCGGAAACCACAAAG+TGG - chr3_2:3150377-3150396 None:intergenic 40.0%
!! GTGTGATTAATAACGGATCG+CGG - chr3_2:3150424-3150443 None:intergenic 40.0%
TAAATGCTGCTAAAAGAGCG+GGG - chr3_2:3150615-3150634 None:intergenic 40.0%
CTAAATGCTGCTAAAAGAGC+GGG - chr3_2:3150616-3150635 None:intergenic 40.0%
!! TGAAGCATTGACATAGACAC+AGG + chr3_2:3150865-3150884 Msa0391430:intron 40.0%
AGTCTGACATGTGTTAGAGT+CGG - chr3_2:3150972-3150991 None:intergenic 40.0%
TGCTATTATAGAAGGGAAGG+TGG + chr3_2:3151039-3151058 Msa0391430:intron 40.0%
TAACTGATCCAACCCTTCAT+AGG - chr3_2:3151093-3151112 None:intergenic 40.0%
! GTGCTGTTATGAAGGAAAAG+AGG + chr3_2:3151209-3151228 Msa0391430:intron 40.0%
GTTCTTTGCATAACCAAGTC+CGG + chr3_2:3151384-3151403 Msa0391430:CDS 40.0%
!! CGGCGAAGTTCTAAATTATC+AGG + chr3_2:3151404-3151423 Msa0391430:CDS 40.0%
TCAGGCATTTACAGATGCTA+AGG + chr3_2:3151422-3151441 Msa0391430:CDS 40.0%
CAGGCATTTACAGATGCTAA+GGG + chr3_2:3151423-3151442 Msa0391430:CDS 40.0%
AGGCATTTACAGATGCTAAG+GGG + chr3_2:3151424-3151443 Msa0391430:CDS 40.0%
TGCTCATGGAAACTACTGAT+TGG - chr3_2:3151510-3151529 None:intergenic 40.0%
TCAGTTACAATCATCCATCG+GGG + chr3_2:3151568-3151587 Msa0391430:CDS 40.0%
ATGTTGGAACATTGACAGGT+TGG - chr3_2:3151623-3151642 None:intergenic 40.0%
CAGTATGTTGGAACATTGAC+AGG - chr3_2:3151627-3151646 None:intergenic 40.0%
! AACCGCACTTTTGCGCTTAT+GGG - chr3_2:3145580-3145599 None:intergenic 45.0%
! AAACCGCACTTTTGCGCTTA+TGG - chr3_2:3145581-3145600 None:intergenic 45.0%
!!! GCGCAAAAGTGCGGTTTTTT+AGG + chr3_2:3145584-3145603 Msa0391430:five_prime_UTR 45.0%
!!! AGGGTTTTTGAAGTGTTGGC+TGG + chr3_2:3146122-3146141 Msa0391430:intron 45.0%
!!! GGGTTTTTGAAGTGTTGGCT+GGG + chr3_2:3146123-3146142 Msa0391430:intron 45.0%
!! CACTGGTGTTGTATGACCAA+TGG + chr3_2:3146167-3146186 Msa0391430:intron 45.0%
!! TGGTGTTGTATGACCAATGG+AGG + chr3_2:3146170-3146189 Msa0391430:intron 45.0%
! AAAGTGCTTAAAGACTGCCC+CGG + chr3_2:3146620-3146639 Msa0391430:intron 45.0%
ACAAGTACAGGTTCATACCC+GGG - chr3_2:3146641-3146660 None:intergenic 45.0%
GACAAGTACAGGTTCATACC+CGG - chr3_2:3146642-3146661 None:intergenic 45.0%
!! ACGGTAAGGATTCTAGGGTT+AGG + chr3_2:3146669-3146688 Msa0391430:intron 45.0%
GGGTTAGGAATCGTATACTG+GGG + chr3_2:3146684-3146703 Msa0391430:intron 45.0%
! GGCTTGATGATTAGATGCCT+TGG + chr3_2:3146712-3146731 Msa0391430:intron 45.0%
TTTATAGCCTTCCTTGGGCT+TGG + chr3_2:3146755-3146774 Msa0391430:intron 45.0%
TTATAGCCTTCCTTGGGCTT+GGG + chr3_2:3146756-3146775 Msa0391430:intron 45.0%
! GCGGTTTCTAGAAGACCAAT+AGG + chr3_2:3146836-3146855 Msa0391430:intron 45.0%
AGGCCCTAGGAATATCATGA+CGG + chr3_2:3146975-3146994 Msa0391430:intron 45.0%
GGACCGTCATGATATTCCTA+GGG - chr3_2:3146981-3147000 None:intergenic 45.0%
TGGACCGTCATGATATTCCT+AGG - chr3_2:3146982-3147001 None:intergenic 45.0%
TTGTCCCAAGACTTGTGCTT+GGG - chr3_2:3147011-3147030 None:intergenic 45.0%
! AAGGCGAAGTGATGATGACA+AGG + chr3_2:3147029-3147048 Msa0391430:intron 45.0%
! AGGCGAAGTGATGATGACAA+GGG + chr3_2:3147030-3147049 Msa0391430:intron 45.0%
! AAGTGATGATGACAAGGGGA+TGG + chr3_2:3147035-3147054 Msa0391430:intron 45.0%
AAGACTTAATGGCCTCCAGA+AGG - chr3_2:3147062-3147081 None:intergenic 45.0%
TTGTCCCAAGACTTGTGCTT+GGG - chr3_2:3147011-3147030 None:intergenic 45.0%
! ACGCGTCCTTTAAAAAGACG+AGG - chr3_2:3147372-3147391 None:intergenic 45.0%
AAGAAGCTTGGCACAGCAAA+CGG - chr3_2:3147427-3147446 None:intergenic 45.0%
GCTTAAACCGGAAGGAAGTT+AGG - chr3_2:3147457-3147476 None:intergenic 45.0%
TATGCTGAAGCCGCTTAAAC+CGG - chr3_2:3147469-3147488 None:intergenic 45.0%
AGGATGAGGAATACCTGTGT+TGG - chr3_2:3147504-3147523 None:intergenic 45.0%
CTTCGTGAGAGTCCGAAATT+AGG + chr3_2:3147550-3147569 Msa0391430:intron 45.0%
TTAGAGAATGCGATGAGAGG+GGG + chr3_2:3147584-3147603 Msa0391430:intron 45.0%
GTCCGAATGGGGTTATTAAC+TGG + chr3_2:3147677-3147696 Msa0391430:intron 45.0%
! GTGTTTCTTTCTGCCACTTC+AGG + chr3_2:3147790-3147809 Msa0391430:intron 45.0%
! CCAAATCAGACAACGGATTC+TGG - chr3_2:3147858-3147877 None:intergenic 45.0%
CCAGAATCCGTTGTCTGATT+TGG + chr3_2:3147855-3147874 Msa0391430:intron 45.0%
CCTTCTGCCAAATCAGACAA+CGG - chr3_2:3147865-3147884 None:intergenic 45.0%
!! CGTTGTCTGATTTGGCAGAA+GGG + chr3_2:3147863-3147882 Msa0391430:intron 45.0%
!! GTTGTCTGATTTGGCAGAAG+GGG + chr3_2:3147864-3147883 Msa0391430:intron 45.0%
GAACCTGGTGATAGCTTAGT+AGG + chr3_2:3147886-3147905 Msa0391430:intron 45.0%
ATCCCTACTAAGCTATCACC+AGG - chr3_2:3147892-3147911 None:intergenic 45.0%
TGGTGATAGCTTAGTAGGGA+TGG + chr3_2:3147891-3147910 Msa0391430:intron 45.0%
!! TGCAGAAGAAGTTTTAGCGG+AGG + chr3_2:3147921-3147940 Msa0391430:intron 45.0%
GCTTCTAAATAGGTCCATGG+CGG - chr3_2:3147968-3147987 None:intergenic 45.0%
! CGTGCTGAAGTATCTCAATG+TGG + chr3_2:3148161-3148180 Msa0391430:intron 45.0%
!!! AGGGTTTTTGAAGTGTTGGC+TGG + chr3_2:3146122-3146141 Msa0391430:intron 45.0%
!!! GGGTTTTTGAAGTGTTGGCT+GGG + chr3_2:3146123-3146142 Msa0391430:intron 45.0%
!! CACTGGTGTTGTATGACCAA+TGG + chr3_2:3146167-3146186 Msa0391430:intron 45.0%
!! TGGTGTTGTATGACCAATGG+AGG + chr3_2:3146170-3146189 Msa0391430:intron 45.0%
! AAAGTGCTTAAAGACTGCCC+CGG + chr3_2:3146620-3146639 Msa0391430:intron 45.0%
CTGGATTTGTAAAGGACGCT+AGG - chr3_2:3148956-3148975 None:intergenic 45.0%
TGTGGGAACCTGTAATTGCA+AGG - chr3_2:3149096-3149115 None:intergenic 45.0%
CACTCACTCAGCTACATCAT+CGG - chr3_2:3149238-3149257 None:intergenic 45.0%
GATATGGGAAATCTGTGTGC+AGG + chr3_2:3149257-3149276 Msa0391430:intron 45.0%
AGGGAACAGAATGATGAGGT+AGG - chr3_2:3149305-3149324 None:intergenic 45.0%
AGAGAGGGAACAGAATGATG+AGG - chr3_2:3149309-3149328 None:intergenic 45.0%
GACAAGACAGCTGAAATGGA+GGG - chr3_2:3149450-3149469 None:intergenic 45.0%
TGACAAGACAGCTGAAATGG+AGG - chr3_2:3149451-3149470 None:intergenic 45.0%
TCAGCTGTCTTGTCATTGTG+TGG + chr3_2:3149456-3149475 Msa0391430:intron 45.0%
TGTGTGGTACCCTCAGTAAT+TGG + chr3_2:3149472-3149491 Msa0391430:intron 45.0%
!! TAACAGTATAGCGGTGCTAC+CGG - chr3_2:3149682-3149701 None:intergenic 45.0%
CGATTCTGCTATCACTGCAA+TGG + chr3_2:3149752-3149771 Msa0391430:intron 45.0%
TACCTAGCTCATGGGGTTTA+GGG - chr3_2:3149956-3149975 None:intergenic 45.0%
TTACCTAGCTCATGGGGTTT+AGG - chr3_2:3149957-3149976 None:intergenic 45.0%
TGAGAGGTTACCTAGCTCAT+GGG - chr3_2:3149964-3149983 None:intergenic 45.0%
ATGAGAGGTTACCTAGCTCA+TGG - chr3_2:3149965-3149984 None:intergenic 45.0%
TGCCTCACTATCGCAAAATG+AGG + chr3_2:3150085-3150104 Msa0391430:intron 45.0%
!! AAAATAGCGGATAGCGTAGC+GGG - chr3_2:3150401-3150420 None:intergenic 45.0%
!! GAAAATAGCGGATAGCGTAG+CGG - chr3_2:3150402-3150421 None:intergenic 45.0%
! TAACGGATCGCGGAAAATAG+CGG - chr3_2:3150414-3150433 None:intergenic 45.0%
GCATTGGGACATTGCATCAA+AGG - chr3_2:3150586-3150605 None:intergenic 45.0%
AGAGCGGGGAATATAGCATT+GGG - chr3_2:3150601-3150620 None:intergenic 45.0%
AAGAGCGGGGAATATAGCAT+TGG - chr3_2:3150602-3150621 None:intergenic 45.0%
CAACAAAGGACAGGTGAATG+TGG + chr3_2:3150806-3150825 Msa0391430:intron 45.0%
GGACACCAACACAAAACATG+TGG - chr3_2:3150951-3150970 None:intergenic 45.0%
TGTAGAGCTGTTGCTGTAGT+GGG + chr3_2:3151065-3151084 Msa0391430:intron 45.0%
! CTGTAGTGGGATCCTATGAA+GGG + chr3_2:3151078-3151097 Msa0391430:intron 45.0%
! ATTTAGAACTTCGCCGGACT+TGG - chr3_2:3151400-3151419 None:intergenic 45.0%
AATGCCTGAGAGTGATCGTT+GGG + chr3_2:3151467-3151486 Msa0391430:CDS 45.0%
CTCAGTGATTCAGCGAGTGT+CGG + chr3_2:3145529-3145548 Msa0391430:five_prime_UTR 50.0%
AGCCCATAAGCGCAAAAGTG+CGG + chr3_2:3145575-3145594 Msa0391430:five_prime_UTR 50.0%
TTGGGTGTAAGTGGTTGGAC+TGG + chr3_2:3145690-3145709 Msa0391430:CDS 50.0%
!! GGTTGGACTGGTGAAATTCG+TGG + chr3_2:3145702-3145721 Msa0391430:CDS 50.0%
CTCTTGTTAACGAGTGCTCC+CGG + chr3_2:3146491-3146510 Msa0391430:intron 50.0%
TCTTGTTAACGAGTGCTCCC+GGG + chr3_2:3146492-3146511 Msa0391430:intron 50.0%
!! AGATGCTTAAAGAGTGCCCC+GGG - chr3_2:3146512-3146531 None:intergenic 50.0%
!! GAGATGCTTAAAGAGTGCCC+CGG - chr3_2:3146513-3146532 None:intergenic 50.0%
AAGTGCTTAAAGACTGCCCC+GGG + chr3_2:3146621-3146640 Msa0391430:intron 50.0%
CAAGTACAGGTTCATACCCG+GGG - chr3_2:3146640-3146659 None:intergenic 50.0%
CACTCTTGGGATCATTCCCA+AGG - chr3_2:3146732-3146751 None:intergenic 50.0%
CTTGGGAATGATCCCAAGAG+TGG + chr3_2:3146730-3146749 Msa0391430:intron 50.0%
TAGAGGTCTTACGCCCCTTA+AGG + chr3_2:3146922-3146941 Msa0391430:intron 50.0%
GACTCCAAGACCTCCTTAAG+GGG - chr3_2:3146938-3146957 None:intergenic 50.0%
GGACTCCAAGACCTCCTTAA+GGG - chr3_2:3146939-3146958 None:intergenic 50.0%
AGGACTCCAAGACCTCCTTA+AGG - chr3_2:3146940-3146959 None:intergenic 50.0%
AAGGAGGTCTTGGAGTCCTT+CGG + chr3_2:3146941-3146960 Msa0391430:intron 50.0%
TGTCCCAAGACTTGTGCTTG+GGG - chr3_2:3147010-3147029 None:intergenic 50.0%
CTTGTCCCAAGACTTGTGCT+TGG - chr3_2:3147012-3147031 None:intergenic 50.0%
CAAGCACAAGTCTTGGGACA+AGG + chr3_2:3147010-3147029 Msa0391430:intron 50.0%
! GGCGAAGTGATGATGACAAG+GGG + chr3_2:3147031-3147050 Msa0391430:intron 50.0%
TGTCCCAAGACTTGTGCTTG+GGG - chr3_2:3147010-3147029 None:intergenic 50.0%
CTTGTCCCAAGACTTGTGCT+TGG - chr3_2:3147012-3147031 None:intergenic 50.0%
CAAGCACAAGTCTTGGGACA+AGG + chr3_2:3147010-3147029 Msa0391430:intron 50.0%
! TCAGTTGATGCACGCCGTTT+GGG + chr3_2:3147160-3147179 Msa0391430:intron 50.0%
TGGCGTTCTTGAGACAACGT+CGG + chr3_2:3147238-3147257 Msa0391430:intron 50.0%
TCTTGACACGTGGCGATCAT+CGG - chr3_2:3147298-3147317 None:intergenic 50.0%
TAAAAAGACGAGGCCGCCTT+GGG - chr3_2:3147362-3147381 None:intergenic 50.0%
TTAAAAAGACGAGGCCGCCT+TGG - chr3_2:3147363-3147382 None:intergenic 50.0%
! AGGCGGCCTCGTCTTTTTAA+AGG + chr3_2:3147363-3147382 Msa0391430:intron 50.0%
ATCCCACTGATCCATCTGAG+AGG + chr3_2:3147617-3147636 Msa0391430:intron 50.0%
TCCCACTGATCCATCTGAGA+GGG + chr3_2:3147618-3147637 Msa0391430:intron 50.0%
TCCCTCTCAGATGGATCAGT+GGG - chr3_2:3147622-3147641 None:intergenic 50.0%
ATCCCTCTCAGATGGATCAG+TGG - chr3_2:3147623-3147642 None:intergenic 50.0%
CTGATCCATCTGAGAGGGAT+CGG + chr3_2:3147623-3147642 Msa0391430:intron 50.0%
! GAGTGTCTGAGACATGCAAC+TGG + chr3_2:3147655-3147674 Msa0391430:intron 50.0%
AGACATGCAACTGGTCCGAA+TGG + chr3_2:3147664-3147683 Msa0391430:intron 50.0%
GACATGCAACTGGTCCGAAT+GGG + chr3_2:3147665-3147684 Msa0391430:intron 50.0%
ACATGCAACTGGTCCGAATG+GGG + chr3_2:3147666-3147685 Msa0391430:intron 50.0%
TTATCAAGGGTTACACGGGG+AGG + chr3_2:3147708-3147727 Msa0391430:intron 50.0%
TGAGTTAACGCTGGAGTCAC+TGG - chr3_2:3147752-3147771 None:intergenic 50.0%
!! CCGTTGTCTGATTTGGCAGA+AGG + chr3_2:3147862-3147881 Msa0391430:intron 50.0%
CTTCGTATATACCGCCGTAC+TGG + chr3_2:3148095-3148114 Msa0391430:intron 50.0%
TACGCCGAACTCTTCCAGTA+CGG - chr3_2:3148112-3148131 None:intergenic 50.0%
ACTGGAAGAGTTCGGCGTAA+AGG + chr3_2:3148113-3148132 Msa0391430:intron 50.0%
GAATAAAGGCCCAGCTGTTG+GGG - chr3_2:3148203-3148222 None:intergenic 50.0%
CGAATAAAGGCCCAGCTGTT+GGG - chr3_2:3148204-3148223 None:intergenic 50.0%
CCAACAGCTGGGCCTTTATT+CGG + chr3_2:3148202-3148221 Msa0391430:intron 50.0%
CAACAGCTGGGCCTTTATTC+GGG + chr3_2:3148203-3148222 Msa0391430:intron 50.0%
AACAGCTGGGCCTTTATTCG+GGG + chr3_2:3148204-3148223 Msa0391430:intron 50.0%
CTCTTGTTAACGAGTGCTCC+CGG + chr3_2:3146491-3146510 Msa0391430:intron 50.0%
TCTTGTTAACGAGTGCTCCC+GGG + chr3_2:3146492-3146511 Msa0391430:intron 50.0%
!! AGATGCTTAAAGAGTGCCCC+GGG - chr3_2:3146512-3146531 None:intergenic 50.0%
!! GAGATGCTTAAAGAGTGCCC+CGG - chr3_2:3146513-3146532 None:intergenic 50.0%
AAGTGCTTAAAGACTGCCCC+GGG + chr3_2:3146621-3146640 Msa0391430:intron 50.0%
CAAATCCAGCAATTCGGCAG+AGG + chr3_2:3148967-3148986 Msa0391430:intron 50.0%
CTAGATACATCGGTAGCCGT+TGG + chr3_2:3149125-3149144 Msa0391430:intron 50.0%
CACTCAGCTACATCATCGGT+GGG - chr3_2:3149234-3149253 None:intergenic 50.0%
TCACTCAGCTACATCATCGG+TGG - chr3_2:3149235-3149254 None:intergenic 50.0%
ACCTAGCTCATGGGGTTTAG+GGG - chr3_2:3149955-3149974 None:intergenic 50.0%
GAGAGGTTACCTAGCTCATG+GGG - chr3_2:3149963-3149982 None:intergenic 50.0%
!! ATAGCGTAGCGGGCAAATAG+CGG - chr3_2:3150391-3150410 None:intergenic 50.0%
CTGTAGAGCTGTTGCTGTAG+TGG + chr3_2:3151064-3151083 Msa0391430:intron 50.0%
! GCTGTAGTGGGATCCTATGA+AGG + chr3_2:3151077-3151096 Msa0391430:intron 50.0%
AGTGGGATCCTATGAAGGGT+TGG + chr3_2:3151082-3151101 Msa0391430:intron 50.0%
CAATGCCTGAGAGTGATCGT+TGG + chr3_2:3151466-3151485 Msa0391430:CDS 50.0%
!! TCGTCTTGGTGGTGGTAGTT+CGG + chr3_2:3151536-3151555 Msa0391430:CDS 50.0%
!! AGTGATTCAGCGAGTGTCGG+TGG + chr3_2:3145532-3145551 Msa0391430:five_prime_UTR 55.0%
CTTGTTAACGAGTGCTCCCG+GGG + chr3_2:3146493-3146512 Msa0391430:intron 55.0%
GTAACCAAAGCCCAAGCCCA+AGG - chr3_2:3146769-3146788 None:intergenic 55.0%
! GGGCTTGGGCTTTGGTTACT+TGG + chr3_2:3146770-3146789 Msa0391430:intron 55.0%
! GGGGCGTAAGACCTCTAGAA+GGG - chr3_2:3146919-3146938 None:intergenic 55.0%
! AGGGGCGTAAGACCTCTAGA+AGG - chr3_2:3146920-3146939 None:intergenic 55.0%
AGGTCTTACGCCCCTTAAGG+AGG + chr3_2:3146925-3146944 Msa0391430:intron 55.0%
TACGCCCCTTAAGGAGGTCT+TGG + chr3_2:3146931-3146950 Msa0391430:intron 55.0%
AGGAGGTCTTGGAGTCCTTC+GGG + chr3_2:3146942-3146961 Msa0391430:intron 55.0%
GTCCTTCGGGAGGTCTTCTA+AGG + chr3_2:3146955-3146974 Msa0391430:intron 55.0%
TCCCAAGACTTGTGCTTGGG+GGG - chr3_2:3147008-3147027 None:intergenic 55.0%
GTCCCAAGACTTGTGCTTGG+GGG - chr3_2:3147009-3147028 None:intergenic 55.0%
TGACAAGGGGATGGACCTTC+TGG + chr3_2:3147044-3147063 Msa0391430:intron 55.0%
TCCCAAGACTTGTGCTTGGG+GGG - chr3_2:3147008-3147027 None:intergenic 55.0%
GTCCCAAGACTTGTGCTTGG+GGG - chr3_2:3147009-3147028 None:intergenic 55.0%
AGTCTTGGGACAAGGCGAAG+TGG + chr3_2:3147018-3147037 Msa0391430:intron 55.0%
! GTCAGTTGATGCACGCCGTT+TGG + chr3_2:3147159-3147178 Msa0391430:intron 55.0%
! TTTTGGCGACGTTCCTCGTG+TGG + chr3_2:3147218-3147237 Msa0391430:intron 55.0%
TGTCTCAAGAACGCCACACG+AGG - chr3_2:3147234-3147253 None:intergenic 55.0%
TTGACACGTGGCGATCATCG+GGG - chr3_2:3147296-3147315 None:intergenic 55.0%
CTTGACACGTGGCGATCATC+GGG - chr3_2:3147297-3147316 None:intergenic 55.0%
CGTTTCAGACACGCTTCCCA+AGG + chr3_2:3147343-3147362 Msa0391430:intron 55.0%
TTCAGACACGCTTCCCAAGG+CGG + chr3_2:3147346-3147365 Msa0391430:intron 55.0%
CTGAAGCCGCTTAAACCGGA+AGG - chr3_2:3147465-3147484 None:intergenic 55.0%
CTGACGATTCGTCCCTGAAG+TGG - chr3_2:3147806-3147825 None:intergenic 55.0%
CACTTCAGGGACGAATCGTC+AGG + chr3_2:3147804-3147823 Msa0391430:intron 55.0%
TTCAGGGACGAATCGTCAGG+AGG + chr3_2:3147807-3147826 Msa0391430:intron 55.0%
GATTTGGCAGAAGGGGAACC+TGG + chr3_2:3147871-3147890 Msa0391430:intron 55.0%
AGCGGAGGAATCGTTGTACG+TGG + chr3_2:3147936-3147955 Msa0391430:intron 55.0%
AAAGAACCACGTCCTCCTCG+CGG - chr3_2:3148014-3148033 None:intergenic 55.0%
ACGCGTCTGTGACCAAGAGA+CGG + chr3_2:3148053-3148072 Msa0391430:intron 55.0%
ACCGCCGTACTGGAAGAGTT+CGG + chr3_2:3148105-3148124 Msa0391430:intron 55.0%
CCGAATAAAGGCCCAGCTGT+TGG - chr3_2:3148205-3148224 None:intergenic 55.0%
CTTGTTAACGAGTGCTCCCG+GGG + chr3_2:3146493-3146512 Msa0391430:intron 55.0%
AGGACGCTAGGGTTCATACC+CGG - chr3_2:3148944-3148963 None:intergenic 55.0%
GGTGGGAGTTGGATCGAGAT+CGG - chr3_2:3149217-3149236 None:intergenic 55.0%
GCTACATCATCGGTGGGAGT+TGG - chr3_2:3149228-3149247 None:intergenic 55.0%
ACCCCTAAACCCCATGAGCT+AGG + chr3_2:3149951-3149970 Msa0391430:intron 55.0%
GCATCCCAACGATCACTCTC+AGG - chr3_2:3151474-3151493 None:intergenic 55.0%
CAAGACGAGTGCAGTGCTCA+TGG - chr3_2:3151524-3151543 None:intergenic 55.0%
! CATGAGCACTGCACTCGTCT+TGG + chr3_2:3151522-3151541 Msa0391430:CDS 55.0%
!! CGTCTTGGTGGTGGTAGTTC+GGG + chr3_2:3151537-3151556 Msa0391430:CDS 55.0%
!! GTCTTGGTGGTGGTAGTTCG+GGG + chr3_2:3151538-3151557 Msa0391430:CDS 55.0%
ACAGCATGTGAATGCCCCGA+TGG - chr3_2:3151585-3151604 None:intergenic 55.0%
CCAAAGCCCAAGCCCAAGGA+AGG - chr3_2:3146765-3146784 None:intergenic 60.0%
CCTTCCTTGGGCTTGGGCTT+TGG + chr3_2:3146762-3146781 Msa0391430:intron 60.0%
! GGCCTAGGGGTCCTTTTGGA+GGG + chr3_2:3146885-3146904 Msa0391430:intron 60.0%
AGGTCTTGGAGTCCTTCGGG+AGG + chr3_2:3146945-3146964 Msa0391430:intron 60.0%
GGCCTTAGAAGACCTCCCGA+AGG - chr3_2:3146960-3146979 None:intergenic 60.0%
!! GGGAGGTCTTCTAAGGCCCT+AGG + chr3_2:3146962-3146981 Msa0391430:intron 60.0%
AGCCCCCCAAGCACAAGTCT+TGG + chr3_2:3147003-3147022 Msa0391430:intron 60.0%
GCCCCCCAAGCACAAGTCTT+GGG + chr3_2:3147004-3147023 Msa0391430:intron 60.0%
CAAGGGGATGGACCTTCTGG+AGG + chr3_2:3147047-3147066 Msa0391430:intron 60.0%
AGCCCCCCAAGCACAAGTCT+TGG + chr3_2:3147003-3147022 Msa0391430:intron 60.0%
GCCCCCCAAGCACAAGTCTT+GGG + chr3_2:3147004-3147023 Msa0391430:intron 60.0%
GGCGTGCATCAACTGACGTC+AGG - chr3_2:3147156-3147175 None:intergenic 60.0%
CGCAACCGATCCCTCTCAGA+TGG - chr3_2:3147631-3147650 None:intergenic 60.0%
TCGTCAGGAGGACGAGTGTC+TGG + chr3_2:3147819-3147838 Msa0391430:intron 60.0%
GTACGTGGATGTGTCCGCCA+TGG + chr3_2:3147951-3147970 Msa0391430:intron 60.0%
TGGTCACAGACGCGTTCGTC+AGG - chr3_2:3148048-3148067 None:intergenic 60.0%
CGCGTCTGTGACCAAGAGAC+GGG + chr3_2:3148054-3148073 Msa0391430:intron 60.0%
GCGTCTGTGACCAAGAGACG+GGG + chr3_2:3148055-3148074 Msa0391430:intron 60.0%
CGTCTGTGACCAAGAGACGG+GGG + chr3_2:3148056-3148075 Msa0391430:intron 60.0%
TGTGACCAAGAGACGGGGGA+GGG + chr3_2:3148060-3148079 Msa0391430:intron 60.0%
GCCGAACTCTTCCAGTACGG+CGG - chr3_2:3148109-3148128 None:intergenic 60.0%
! CTGTTGGGGCGGATTTGGGT+GGG - chr3_2:3148189-3148208 None:intergenic 60.0%
! CCAGCTGTTGGGGCGGATTT+GGG - chr3_2:3148193-3148212 None:intergenic 60.0%
CCAAATCCGCCCCAACAGCT+GGG + chr3_2:3148191-3148210 Msa0391430:intron 60.0%
TAAAGGCCCAGCTGTTGGGG+CGG - chr3_2:3148200-3148219 None:intergenic 60.0%
GACGCTAGGGTTCATACCCG+GGG - chr3_2:3148942-3148961 None:intergenic 60.0%
GGACGCTAGGGTTCATACCC+GGG - chr3_2:3148943-3148962 None:intergenic 60.0%
CTCTGCCTCTGCCGAATTGC+TGG - chr3_2:3148975-3148994 None:intergenic 60.0%
! GAGCACTGCACTCGTCTTGG+TGG + chr3_2:3151525-3151544 Msa0391430:CDS 60.0%
CACTGCACTCGTCTTGGTGG+TGG + chr3_2:3151528-3151547 Msa0391430:CDS 60.0%
!! TGCTAGGGGCGCCGACCTAT+TGG - chr3_2:3146854-3146873 None:intergenic 65.0%
CCAAAAGGACCCCTAGGCCC+TGG - chr3_2:3146884-3146903 None:intergenic 65.0%
! CCAGGGCCTAGGGGTCCTTT+TGG + chr3_2:3146881-3146900 Msa0391430:intron 65.0%
! GGGCCTAGGGGTCCTTTTGG+AGG + chr3_2:3146884-3146903 Msa0391430:intron 65.0%
CGCCCTCCAAAAGGACCCCT+AGG - chr3_2:3146890-3146909 None:intergenic 65.0%
GGGCATGAGCGCCCTCCAAA+AGG - chr3_2:3146899-3146918 None:intergenic 65.0%
GGGCGCTCATGCCCTTCTAG+AGG + chr3_2:3146905-3146924 Msa0391430:intron 65.0%
GACTTGTGCTTGGGGGGCTG+TGG - chr3_2:3147002-3147021 None:intergenic 65.0%
GACTTGTGCTTGGGGGGCTG+TGG - chr3_2:3147002-3147021 None:intergenic 65.0%
CTGTGACCAAGAGACGGGGG+AGG + chr3_2:3148059-3148078 Msa0391430:intron 65.0%
! GCTGTTGGGGCGGATTTGGG+TGG - chr3_2:3148190-3148209 None:intergenic 65.0%
CCCAAATCCGCCCCAACAGC+TGG + chr3_2:3148190-3148209 Msa0391430:intron 65.0%
! CCCAGCTGTTGGGGCGGATT+TGG - chr3_2:3148194-3148213 None:intergenic 65.0%
GCCCCTAGCAGAACGCGCCA+GGG + chr3_2:3146864-3146883 Msa0391430:intron 70.0%
GCCCTGGCGCGTTCTGCTAG+GGG - chr3_2:3146868-3146887 None:intergenic 70.0%
GGCCCTGGCGCGTTCTGCTA+GGG - chr3_2:3146869-3146888 None:intergenic 70.0%
AGGCCCTGGCGCGTTCTGCT+AGG - chr3_2:3146870-3146889 None:intergenic 70.0%
AGCAGAACGCGCCAGGGCCT+AGG + chr3_2:3146870-3146889 Msa0391430:intron 70.0%
GCAGAACGCGCCAGGGCCTA+GGG + chr3_2:3146871-3146890 Msa0391430:intron 70.0%
CAGAACGCGCCAGGGCCTAG+GGG + chr3_2:3146872-3146891 Msa0391430:intron 70.0%
TATCTCCGCTACCGGCCGCG+AGG + chr3_2:3147996-3148015 Msa0391430:intron 70.0%
AACCACGTCCTCCTCGCGGC+CGG - chr3_2:3148010-3148029 None:intergenic 70.0%
CATCGCCCTCCCCCGTCTCT+TGG - chr3_2:3148068-3148087 None:intergenic 70.0%
CGCCCCTAGCAGAACGCGCC+AGG + chr3_2:3146863-3146882 Msa0391430:intron 75.0%
GTCCTCCTCGCGGCCGGTAG+CGG - chr3_2:3148004-3148023 None:intergenic 75.0%
TACCGGCCGCGAGGAGGACG+TGG + chr3_2:3148005-3148024 Msa0391430:intron 75.0%
! CTCCGCTACCGGCCGCGAGG+AGG + chr3_2:3147999-3148018 Msa0391430:intron 80.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 3145503 3151983 3145503 ID=Msa0391430;Name=Msa0391430
chr3_2 mRNA 3145503 3151983 3145503 ID=Msa0391430-mRNA-1;Parent=Msa0391430;Name=Msa0391430-mRNA-1;_AED=0.20;_eAED=0.20;_QI=124|1|1|1|1|1|2|330|147
chr3_2 exon 3145503 3145786 3145503 ID=Msa0391430-mRNA-1:exon:977;Parent=Msa0391430-mRNA-1
chr3_2 exon 3151370 3151983 3151370 ID=Msa0391430-mRNA-1:exon:978;Parent=Msa0391430-mRNA-1
chr3_2 five_prime_UTR 3145503 3145626 3145503 ID=Msa0391430-mRNA-1:five_prime_utr;Parent=Msa0391430-mRNA-1
chr3_2 CDS 3145627 3145786 3145627 ID=Msa0391430-mRNA-1:cds;Parent=Msa0391430-mRNA-1
chr3_2 CDS 3151370 3151653 3151370 ID=Msa0391430-mRNA-1:cds;Parent=Msa0391430-mRNA-1
chr3_2 three_prime_UTR 3151654 3151983 3151654 ID=Msa0391430-mRNA-1:three_prime_utr;Parent=Msa0391430-mRNA-1
Gene Sequence

>Msa0391430

ATGCAATCAATGAAGCAGAAGATGATGGTGGAATTGATTGTGTTGTTGATGATGGTGTTTGTTTTGGGTGTAAGTGGTTGGACTGGTGAAATTCGTGGAAGAGTTGTTTGTGATGTTTGTGGTGATTCTTCTCTTGGTCCTGAAGATCATGTTCTTGAAGGTGCTGAAGTTGCTGTTCTTTGCATAACCAAGTCCGGCGAAGTTCTAAATTATCAGGCATTTACAGATGCTAAGGGGATATACACAGTAGCTGAGACAATGCCTGAGAGTGATCGTTGGGATGCATGTCTTGCTCGACCAATCAGTAGTTTCCATGAGCACTGCACTCGTCTTGGTGGTGGTAGTTCGGGGATTAAATTCAGTTACAATCATCCATCGGGGCATTCACATGCTGTCAGAACCTTTGTTTACCAACCTGTCAATGTTCCAACATACTGCATCTGA

Protein sequence

>Msa0391430

MQSMKQKMMVELIVLLMMVFVLGVSGWTGEIRGRVVCDVCGDSSLGPEDHVLEGAEVAVLCITKSGEVLNYQAFTDAKGIYTVAETMPESDRWDACLARPISSFHEHCTRLGGGSSGIKFSYNHPSGHSHAVRTFVYQPVNVPTYCI*