AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1156100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1156100 MtrunA17_Chr7g0249441 93.590 312 15 2 1 311 1 308 0.0 549
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1156100 AT1G65230.1 62.545 275 87 5 42 311 23 286 4.86e-122 352

Find 81 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTCAGCATGAAGAATTT+TGG 0.125608 7_4:+44335277 Msa1156100:CDS
GAATGACTTGTCCACTAATT+TGG 0.200921 7_4:-44335260 None:intergenic
AATTTGGTTAAGCGTAAATT+TGG 0.268859 7_4:-44335244 None:intergenic
ATCAGAGTTCTCTTCTTTCT+TGG 0.276153 7_4:-44335424 None:intergenic
CTGGTGTTTGTCTACGTATC+TGG 0.277689 7_4:+44333701 Msa1156100:five_prime_UTR
AAAATTAGCACTCAAATTCT+TGG 0.285342 7_4:-44335397 None:intergenic
TTCAGATGTTGCTGATAAAA+TGG 0.295505 7_4:+44334115 Msa1156100:CDS
TTATGAACTTCGCTATTTGA+TGG 0.299508 7_4:-44336935 None:intergenic
GATATTTATCCAGATCCTTC+TGG 0.318352 7_4:+44335444 Msa1156100:CDS
TTTACGCTTAACCAAATTAG+TGG 0.347218 7_4:+44335249 Msa1156100:CDS
TGATGTTTAATGAAAACTTA+AGG 0.351733 7_4:+44333597 None:intergenic
AAAAGTATAAGAGACCTCTA+TGG 0.372478 7_4:+44334407 Msa1156100:CDS
GATGTTTAATGAAAACTTAA+GGG 0.374615 7_4:+44333598 None:intergenic
AGTATCAAGTGGACAATTAG+AGG 0.378287 7_4:+44335165 Msa1156100:CDS
TCAGAGTTCTCTTCTTTCTT+GGG 0.383027 7_4:-44335423 None:intergenic
ATTGTTTGCAGGATCCTATC+AGG 0.388892 7_4:+44334368 Msa1156100:intron
CACACTATCCTCCACGGAAT+GGG 0.402608 7_4:+44333747 Msa1156100:five_prime_UTR
ACACCAGCTAGAACAGATTT+AGG 0.403229 7_4:-44335192 None:intergenic
GGTTGAATCTGTGAAAGATT+TGG 0.404444 7_4:+44335365 Msa1156100:CDS
GTGGAGGATAGTGTGTTGTT+TGG 0.416104 7_4:-44333739 None:intergenic
GTAAAATGCAGATCACAATA+AGG 0.422991 7_4:-44336661 None:intergenic
TGGAGGATAGTGTGTTGTTT+GGG 0.425424 7_4:-44333738 None:intergenic
TTCGGTCCTATCAGCATCAT+TGG 0.433294 7_4:-44334060 None:intergenic
CTGCCAGGAGTAGTGCAATC+TGG 0.441053 7_4:-44336585 None:intergenic
GTTGAAAGCCGTCGTCCCTC+TGG 0.459959 7_4:-44336552 None:intergenic
TAATTTAAACTCACCACAGA+TGG 0.463620 7_4:-44334451 None:intergenic
TGCTGTTTCTGTCACTTACA+AGG 0.463924 7_4:+44334271 Msa1156100:CDS
GTTGGATCACCAGAAGGATC+TGG 0.473479 7_4:-44335453 None:intergenic
CGACCACTAAAACTCCTGAT+AGG 0.474517 7_4:-44334382 None:intergenic
CTCGTGATATATTTGAGCTA+AGG 0.495749 7_4:+44334222 Msa1156100:CDS
CAGTTGCCAATGATGCTGAT+AGG 0.508689 7_4:+44334054 Msa1156100:intron
GTTTGGGAAACAGACTGTGC+AGG 0.512122 7_4:+44335113 Msa1156100:intron
TCTGTTCTAGCTGGTGTAGG+AGG 0.514108 7_4:+44335198 Msa1156100:CDS
ATAAGAGAACTCACCTTGGT+TGG 0.519117 7_4:-44335471 None:intergenic
ATCGCGTGTTCTGTTTGCTA+CGG 0.519764 7_4:+44335344 Msa1156100:CDS
ATGGTTGATAGTATCGACTT+TGG 0.522738 7_4:+44334134 Msa1156100:CDS
ATCTTCACCTGCTAGTGCAC+AGG 0.532447 7_4:+44335308 Msa1156100:CDS
GTGGTGATGACGGAAGGAGA+AGG 0.540371 7_4:-44333890 None:intergenic
TGTGGTATCAGATGATAGTT+CGG 0.542233 7_4:-44334078 None:intergenic
ACACACTATCCTCCACGGAA+TGG 0.543373 7_4:+44333746 Msa1156100:five_prime_UTR
AGGAGTGGGAATCGAGCACT+TGG 0.543642 7_4:+44334242 Msa1156100:CDS
AAGCCTAAATCTGTTCTAGC+TGG 0.546046 7_4:+44335189 Msa1156100:CDS
CTGTTCTAGCTGGTGTAGGA+GGG 0.562411 7_4:+44335199 Msa1156100:CDS
CCACAAAATATATAACTGCC+AGG 0.563060 7_4:-44336600 None:intergenic
TGGTGATGACGGAAGGAGAA+GGG 0.566529 7_4:-44333889 None:intergenic
ACGAGCAAGTTGTCTTGCAG+TGG 0.572718 7_4:-44334204 None:intergenic
ACTCCAGATTGCACTACTCC+TGG 0.574194 7_4:+44336582 Msa1156100:CDS
AAATCTGTTCTAGCTGGTGT+AGG 0.576290 7_4:+44335195 Msa1156100:CDS
CACCACTCTTCTTCATTGCG+AGG 0.581012 7_4:+44333916 Msa1156100:CDS
AAAGTATAAGAGACCTCTAT+GGG 0.587841 7_4:+44334408 Msa1156100:CDS
AATTTAAACTCACCACAGAT+GGG 0.588338 7_4:-44334450 None:intergenic
GATATATTTGAGCTAAGGAG+TGG 0.589959 7_4:+44334227 Msa1156100:CDS
GTGGTGGTGGTGATGACGGA+AGG 0.590436 7_4:-44333896 None:intergenic
ACACTATCCTCCACGGAATG+GGG 0.594565 7_4:+44333748 Msa1156100:five_prime_UTR
TGAGTGCAATAGTAGTCCCT+CGG 0.596094 7_4:+44334175 Msa1156100:CDS
ATTCATGTCTCCCCATTCCG+TGG 0.596739 7_4:-44333758 None:intergenic
TGTTCTAGCTGGTGTAGGAG+GGG 0.597266 7_4:+44335200 Msa1156100:CDS
CTTGCAGTGGATTCAACCGA+GGG 0.597295 7_4:-44334191 None:intergenic
CAGTTCTTCCAGAGGGACGA+CGG 0.599235 7_4:+44336544 Msa1156100:intron
GTATCAAGTGGACAATTAGA+GGG 0.600715 7_4:+44335166 Msa1156100:CDS
GAACAAGAACAAGAAAGTGC+GGG 0.620208 7_4:-44333787 None:intergenic
ATGAAGAAGAGTGGTGGTGG+TGG 0.621338 7_4:-44333909 None:intergenic
TGTTGGATGTATTGTTGCGG+TGG 0.621579 7_4:-44333846 None:intergenic
GTTGCGGTGGAGTGCAGCGG+AGG 0.626825 7_4:-44333833 None:intergenic
GCATGTACGTACTACTATGT+TGG 0.627095 7_4:-44333863 None:intergenic
GGAGGAAAGAGAAGAAGTAG+CGG 0.628597 7_4:-44333815 None:intergenic
ATATATTTGAGCTAAGGAGT+GGG 0.636515 7_4:+44334228 Msa1156100:CDS
ACCTTGGTTGGATCACCAGA+AGG 0.644200 7_4:-44335459 None:intergenic
CTATGTTGGATGTATTGTTG+CGG 0.649341 7_4:-44333849 None:intergenic
AGAACAAGAACAAGAAAGTG+CGG 0.649734 7_4:-44333788 None:intergenic
TCTTGCAGTGGATTCAACCG+AGG 0.655059 7_4:-44334192 None:intergenic
AAACAACACACTATCCTCCA+CGG 0.657287 7_4:+44333741 Msa1156100:five_prime_UTR
CTCGCAATGAAGAAGAGTGG+TGG 0.661528 7_4:-44333915 None:intergenic
GTAAGTGACAGAAACAGCAT+AGG 0.662129 7_4:-44334267 None:intergenic
GCAATGAAGAAGAGTGGTGG+TGG 0.667864 7_4:-44333912 None:intergenic
TGCACTTGAAAACCCATCTG+TGG 0.671005 7_4:+44334438 Msa1156100:CDS
TCCTTCTGGTGATCCAACCA+AGG 0.672407 7_4:+44335458 Msa1156100:CDS
AGTGCAGTGATAGCCCATAG+AGG 0.679550 7_4:-44334421 None:intergenic
CATGTCTCCCCATTCCGTGG+AGG 0.679841 7_4:-44333755 None:intergenic
TACCTCGCAATGAAGAAGAG+TGG 0.682340 7_4:-44333918 None:intergenic
ATTGTTGCGGTGGAGTGCAG+CGG 0.685877 7_4:-44333836 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAGGTATTATTCATTTTA+TGG - chr7_4:44333640-44333659 None:intergenic 15.0%
!!! TTTTTCCTTTTTAATTTGAT+GGG + chr7_4:44334579-44334598 Msa1156100:intron 15.0%
!!! ATAAAGTCAAATTGTTTTAT+AGG + chr7_4:44336219-44336238 Msa1156100:intron 15.0%
!! GATTGTATTATTCATTTATT+TGG + chr7_4:44336471-44336490 Msa1156100:intron 15.0%
!!! CATTTTATGGAAAATTACAT+TGG - chr7_4:44333627-44333646 None:intergenic 20.0%
!! GAATATTGATATATGTTATG+TGG + chr7_4:44334020-44334039 Msa1156100:intron 20.0%
!! ATAAAAGATATAAAGTCCAA+AGG - chr7_4:44334321-44334340 None:intergenic 20.0%
!!! ATGTTTTTTTTATTGTTTGC+AGG + chr7_4:44334357-44334376 Msa1156100:intron 20.0%
!!! GTTTTTCCTTTTTAATTTGA+TGG + chr7_4:44334578-44334597 Msa1156100:intron 20.0%
!! TAACAATTAAATTCGACAAA+AGG + chr7_4:44335062-44335081 Msa1156100:intron 20.0%
!!! TTATGATATCTGTTTTGTTT+GGG + chr7_4:44335097-44335116 Msa1156100:intron 20.0%
!!! TCTTATCTTTTATCTTCTTA+AGG + chr7_4:44335525-44335544 Msa1156100:intron 20.0%
!!! TTTATCTTCTTAAGGTATTT+TGG + chr7_4:44335533-44335552 Msa1156100:intron 20.0%
!!! GCTATTATCTTTTTTTTGAA+TGG + chr7_4:44335601-44335620 Msa1156100:intron 20.0%
!!! TTATTGTTTTTTTTTCTTCC+GGG - chr7_4:44335778-44335797 None:intergenic 20.0%
!!! GTTATTGTTTTTTTTTCTTC+CGG - chr7_4:44335779-44335798 None:intergenic 20.0%
!! AAAGAAATAAACTAGAAGAT+TGG - chr7_4:44336381-44336400 None:intergenic 20.0%
!!! TTTTTACCATTATTACATGA+TGG + chr7_4:44336405-44336424 Msa1156100:intron 20.0%
!!! TTTCATGCTTCTTTTTTCTA+TGG - chr7_4:44333663-44333682 None:intergenic 25.0%
! TGAAAAAGAAGAAAAAGAAG+AGG + chr7_4:44333678-44333697 Msa1156100:five_prime_UTR 25.0%
! TACAAAATGTTGTCAGATAA+CGG + chr7_4:44334713-44334732 Msa1156100:intron 25.0%
! TAGAATGGTGAAATAAAACA+TGG - chr7_4:44335015-44335034 None:intergenic 25.0%
! GAAAGTGAAATCTAATAGAA+TGG - chr7_4:44335030-44335049 None:intergenic 25.0%
! AATTAAATTCGACAAAAGGA+AGG + chr7_4:44335066-44335085 Msa1156100:intron 25.0%
!!! GTTATGATATCTGTTTTGTT+TGG + chr7_4:44335096-44335115 Msa1156100:intron 25.0%
! AATTTGGTTAAGCGTAAATT+TGG - chr7_4:44335247-44335266 None:intergenic 25.0%
! AAAATTAGCACTCAAATTCT+TGG - chr7_4:44335400-44335419 None:intergenic 25.0%
!!! AAGGTATTTTGGTTACTTTT+TGG + chr7_4:44335544-44335563 Msa1156100:intron 25.0%
! TCTACTATGAGTTCTTAATT+AGG - chr7_4:44335578-44335597 None:intergenic 25.0%
!!! TATTGTTTTTTTTTCTTCCG+GGG - chr7_4:44335777-44335796 None:intergenic 25.0%
! AAAAAAACAATAACACTTGC+AGG + chr7_4:44335785-44335804 Msa1156100:intron 25.0%
! AAAAAACAATAACACTTGCA+GGG + chr7_4:44335786-44335805 Msa1156100:intron 25.0%
!! AATGATATAATCTTTTCTGG+TGG - chr7_4:44335955-44335974 None:intergenic 25.0%
! CAGAAAAGATTATATCATTC+CGG + chr7_4:44335956-44335975 Msa1156100:intron 25.0%
!!! TTTTAGTTTGGCATGTTATT+TGG - chr7_4:44335996-44336015 None:intergenic 25.0%
!!! TCATTTTTAATAAGCTATCC+AGG - chr7_4:44336262-44336281 None:intergenic 25.0%
! TTCATACCATCATGTAATAA+TGG - chr7_4:44336414-44336433 None:intergenic 25.0%
!! CTTTTCATGACTTTAATTGT+TGG + chr7_4:44336507-44336526 Msa1156100:intron 25.0%
!!! AAGCTTTTATGACTTTGTTT+AGG + chr7_4:44336799-44336818 Msa1156100:three_prime_UTR 25.0%
!!! TCATAAGTTGTTTTAGAGTA+CGG + chr7_4:44336952-44336971 Msa1156100:three_prime_UTR 25.0%
!!! GCTTCTTTTTTCTATGGATA+AGG - chr7_4:44333657-44333676 None:intergenic 30.0%
!! TGAATATGATTTTTCAGCTG+TGG - chr7_4:44334099-44334118 None:intergenic 30.0%
TTCAGATGTTGCTGATAAAA+TGG + chr7_4:44334115-44334134 Msa1156100:CDS 30.0%
ATATATTTGAGCTAAGGAGT+GGG + chr7_4:44334228-44334247 Msa1156100:CDS 30.0%
! TGTCTTTAATGCTTTTCCTT+TGG + chr7_4:44334302-44334321 Msa1156100:intron 30.0%
! AAAAGTATAAGAGACCTCTA+TGG + chr7_4:44334407-44334426 Msa1156100:CDS 30.0%
AAAGTATAAGAGACCTCTAT+GGG + chr7_4:44334408-44334427 Msa1156100:CDS 30.0%
AATTTAAACTCACCACAGAT+GGG - chr7_4:44334453-44334472 None:intergenic 30.0%
TAATTTAAACTCACCACAGA+TGG - chr7_4:44334454-44334473 None:intergenic 30.0%
!! TGATTAGTCTATGAAGCAAT+AGG + chr7_4:44334474-44334493 Msa1156100:intron 30.0%
!! GATTAGTCTATGAAGCAATA+GGG + chr7_4:44334475-44334494 Msa1156100:intron 30.0%
TCTAGCCCATCAAATTAAAA+AGG - chr7_4:44334587-44334606 None:intergenic 30.0%
TATAGCACTGTAGTATATAG+TGG + chr7_4:44334641-44334660 Msa1156100:intron 30.0%
TATAACATACTGCAAAACAC+TGG - chr7_4:44334690-44334709 None:intergenic 30.0%
AAAGACATGAAATTGATCAG+TGG - chr7_4:44334847-44334866 None:intergenic 30.0%
AATCGATGGAATATATGAGA+AGG - chr7_4:44334887-44334906 None:intergenic 30.0%
!! GAAGTTTTTAAAGGAATCGA+TGG - chr7_4:44334901-44334920 None:intergenic 30.0%
! CCTCAAATGGAAGTTTTTAA+AGG - chr7_4:44334910-44334929 None:intergenic 30.0%
! CCTTTAAAAACTTCCATTTG+AGG + chr7_4:44334907-44334926 Msa1156100:intron 30.0%
!! CAAGTGTTTTAAGTATCAAG+TGG + chr7_4:44335154-44335173 Msa1156100:CDS 30.0%
TTTACGCTTAACCAAATTAG+TGG + chr7_4:44335249-44335268 Msa1156100:CDS 30.0%
! TCATTCAGCATGAAGAATTT+TGG + chr7_4:44335277-44335296 Msa1156100:CDS 30.0%
! CATTCAGCATGAAGAATTTT+GGG + chr7_4:44335278-44335297 Msa1156100:CDS 30.0%
CTAGAAGAATCTTAAACTTG+TGG + chr7_4:44335494-44335513 Msa1156100:intron 30.0%
!!! TTTTTTGATTGCTGTTTTGG+CGG - chr7_4:44335673-44335692 None:intergenic 30.0%
!!! GTGTTTTTTGATTGCTGTTT+TGG - chr7_4:44335676-44335695 None:intergenic 30.0%
AACACAACAAAAAAAACCTG+AGG + chr7_4:44335691-44335710 Msa1156100:intron 30.0%
ACACAACAAAAAAAACCTGA+GGG + chr7_4:44335692-44335711 Msa1156100:intron 30.0%
!!! TTTCTCTTTTTGGTGTTTCT+GGG - chr7_4:44335751-44335770 None:intergenic 30.0%
!!! TTTTCTCTTTTTGGTGTTTC+TGG - chr7_4:44335752-44335771 None:intergenic 30.0%
! CGGAATGATATAATCTTTTC+TGG - chr7_4:44335958-44335977 None:intergenic 30.0%
AATGAGCTGAAAACAACTTA+CGG + chr7_4:44336277-44336296 Msa1156100:intron 30.0%
! ATTTTATTCAGTTCTTCCAG+AGG + chr7_4:44336536-44336555 Msa1156100:intron 30.0%
! TTTTATTCAGTTCTTCCAGA+GGG + chr7_4:44336537-44336556 Msa1156100:intron 30.0%
GTAAAATGCAGATCACAATA+AGG - chr7_4:44336664-44336683 None:intergenic 30.0%
TTATGAACTTCGCTATTTGA+TGG - chr7_4:44336938-44336957 None:intergenic 30.0%
!!! CATAAGTTGTTTTAGAGTAC+GGG + chr7_4:44336953-44336972 Msa1156100:three_prime_UTR 30.0%
!!! ATAAGTTGTTTTAGAGTACG+GGG + chr7_4:44336954-44336973 Msa1156100:three_prime_UTR 30.0%
AAAGAAGAAAAAGAAGAGGC+TGG + chr7_4:44333682-44333701 Msa1156100:five_prime_UTR 35.0%
AGAACAAGAACAAGAAAGTG+CGG - chr7_4:44333791-44333810 None:intergenic 35.0%
CTATGTTGGATGTATTGTTG+CGG - chr7_4:44333852-44333871 None:intergenic 35.0%
TGTGGTATCAGATGATAGTT+CGG - chr7_4:44334081-44334100 None:intergenic 35.0%
!! ATGGTTGATAGTATCGACTT+TGG + chr7_4:44334134-44334153 Msa1156100:CDS 35.0%
CTCGTGATATATTTGAGCTA+AGG + chr7_4:44334222-44334241 Msa1156100:CDS 35.0%
GATATATTTGAGCTAAGGAG+TGG + chr7_4:44334227-44334246 Msa1156100:CDS 35.0%
TCTTAGACAGTTACCTCAAA+TGG - chr7_4:44334923-44334942 None:intergenic 35.0%
AAATTCGACAAAAGGAAGGT+AGG + chr7_4:44335070-44335089 Msa1156100:intron 35.0%
AGTATCAAGTGGACAATTAG+AGG + chr7_4:44335165-44335184 Msa1156100:CDS 35.0%
GTATCAAGTGGACAATTAGA+GGG + chr7_4:44335166-44335185 Msa1156100:CDS 35.0%
! GAATGACTTGTCCACTAATT+TGG - chr7_4:44335263-44335282 None:intergenic 35.0%
GGTTGAATCTGTGAAAGATT+TGG + chr7_4:44335365-44335384 Msa1156100:CDS 35.0%
TCAGAGTTCTCTTCTTTCTT+GGG - chr7_4:44335426-44335445 None:intergenic 35.0%
ATCAGAGTTCTCTTCTTTCT+TGG - chr7_4:44335427-44335446 None:intergenic 35.0%
GATATTTATCCAGATCCTTC+TGG + chr7_4:44335444-44335463 Msa1156100:CDS 35.0%
!!! GATTAGGGTTGCTTTTAGTT+TGG - chr7_4:44336008-44336027 None:intergenic 35.0%
!! GTTGTTTTCATAAACTGTCC+TGG + chr7_4:44336241-44336260 Msa1156100:intron 35.0%
ATGAGCTGAAAACAACTTAC+GGG + chr7_4:44336278-44336297 Msa1156100:intron 35.0%
CCACAAAATATATAACTGCC+AGG - chr7_4:44336603-44336622 None:intergenic 35.0%
! CCTGGCAGTTATATATTTTG+TGG + chr7_4:44336600-44336619 Msa1156100:CDS 35.0%
! ATTTTGTGGTACAAGTTCTG+AGG + chr7_4:44336614-44336633 Msa1156100:CDS 35.0%
!! TGGAGGATAGTGTGTTGTTT+GGG - chr7_4:44333741-44333760 None:intergenic 40.0%
AAACAACACACTATCCTCCA+CGG + chr7_4:44333741-44333760 Msa1156100:five_prime_UTR 40.0%
! GAACAAGAACAAGAAAGTGC+GGG - chr7_4:44333790-44333809 None:intergenic 40.0%
GCATGTACGTACTACTATGT+TGG - chr7_4:44333866-44333885 None:intergenic 40.0%
GTAAGTGACAGAAACAGCAT+AGG - chr7_4:44334270-44334289 None:intergenic 40.0%
!! TGCTGTTTCTGTCACTTACA+AGG + chr7_4:44334271-44334290 Msa1156100:CDS 40.0%
ATTGTTTGCAGGATCCTATC+AGG + chr7_4:44334368-44334387 Msa1156100:intron 40.0%
!! GATCCTATCAGGAGTTTTAG+TGG + chr7_4:44334379-44334398 Msa1156100:CDS 40.0%
ATCTCAGTGATGTCAGATAG+CGG + chr7_4:44334615-44334634 Msa1156100:intron 40.0%
AAGCCTAAATCTGTTCTAGC+TGG + chr7_4:44335189-44335208 Msa1156100:CDS 40.0%
ACACCAGCTAGAACAGATTT+AGG - chr7_4:44335195-44335214 None:intergenic 40.0%
! AAATCTGTTCTAGCTGGTGT+AGG + chr7_4:44335195-44335214 Msa1156100:CDS 40.0%
ATAAGAGAACTCACCTTGGT+TGG - chr7_4:44335474-44335493 None:intergenic 40.0%
CTAGATAAGAGAACTCACCT+TGG - chr7_4:44335478-44335497 None:intergenic 40.0%
ACCAAAAAGAGAAAACACCC+CGG + chr7_4:44335757-44335776 Msa1156100:intron 40.0%
!! AAATCGGTAAGGTTTTGTCG+TGG - chr7_4:44335902-44335921 None:intergenic 40.0%
ATCATTCCGGAAAGTCCAAT+TGG + chr7_4:44335969-44335988 Msa1156100:intron 40.0%
TTTGGACCAATTGGACTTTC+CGG - chr7_4:44335978-44335997 None:intergenic 40.0%
! GGCATGTTATTTGGACCAAT+TGG - chr7_4:44335987-44336006 None:intergenic 40.0%
CTACAGTTTCTGAGTTTCCT+GGG - chr7_4:44336054-44336073 None:intergenic 40.0%
CAGGAAACTCAGAAACTGTA+GGG + chr7_4:44336053-44336072 Msa1156100:intron 40.0%
GCAAAAGATAAACAGAAGCG+CGG + chr7_4:44336149-44336168 Msa1156100:intron 40.0%
CTGGTGTTTGTCTACGTATC+TGG + chr7_4:44333701-44333720 Msa1156100:five_prime_UTR 45.0%
! GTGGAGGATAGTGTGTTGTT+TGG - chr7_4:44333742-44333761 None:intergenic 45.0%
GGAGGAAAGAGAAGAAGTAG+CGG - chr7_4:44333818-44333837 None:intergenic 45.0%
TGTTGGATGTATTGTTGCGG+TGG - chr7_4:44333849-44333868 None:intergenic 45.0%
TACCTCGCAATGAAGAAGAG+TGG - chr7_4:44333921-44333940 None:intergenic 45.0%
CAGTTGCCAATGATGCTGAT+AGG + chr7_4:44334054-44334073 Msa1156100:intron 45.0%
TTCGGTCCTATCAGCATCAT+TGG - chr7_4:44334063-44334082 None:intergenic 45.0%
TGAGTGCAATAGTAGTCCCT+CGG + chr7_4:44334175-44334194 Msa1156100:CDS 45.0%
CGACCACTAAAACTCCTGAT+AGG - chr7_4:44334385-44334404 None:intergenic 45.0%
TGCACTTGAAAACCCATCTG+TGG + chr7_4:44334438-44334457 Msa1156100:CDS 45.0%
! GTTGTCAGATAACGGCTAAG+CGG + chr7_4:44334721-44334740 Msa1156100:intron 45.0%
ATGTCGTCAATCGCGAATAG+CGG - chr7_4:44334783-44334802 None:intergenic 45.0%
AAAAATGCCTGTGCACTAGC+AGG - chr7_4:44335318-44335337 None:intergenic 45.0%
! CTAGTGCACAGGCATTTTTC+TGG + chr7_4:44335319-44335338 Msa1156100:CDS 45.0%
! ATCGCGTGTTCTGTTTGCTA+CGG + chr7_4:44335344-44335363 Msa1156100:CDS 45.0%
!! TCCGGGGTGTTTTCTCTTTT+TGG - chr7_4:44335761-44335780 None:intergenic 45.0%
AGATAGAGAGAGACATCTCG+AGG + chr7_4:44335813-44335832 Msa1156100:intron 45.0%
GATAGAGAGAGACATCTCGA+GGG + chr7_4:44335814-44335833 Msa1156100:intron 45.0%
ATAGAGAGAGACATCTCGAG+GGG + chr7_4:44335815-44335834 Msa1156100:intron 45.0%
!! AACCTTACCGATTTCAGCAC+AGG + chr7_4:44335908-44335927 Msa1156100:intron 45.0%
TTCCTGTGCTGAAATCGGTA+AGG - chr7_4:44335913-44335932 None:intergenic 45.0%
!! TTACCGATTTCAGCACAGGA+AGG + chr7_4:44335912-44335931 Msa1156100:intron 45.0%
!! TACCGATTTCAGCACAGGAA+GGG + chr7_4:44335913-44335932 Msa1156100:intron 45.0%
CGGGGAAGAGAGTTAGATTA+GGG - chr7_4:44336023-44336042 None:intergenic 45.0%
TCGGGGAAGAGAGTTAGATT+AGG - chr7_4:44336024-44336043 None:intergenic 45.0%
TTTCTGAGTTTCCTGGGCTT+AGG - chr7_4:44336048-44336067 None:intergenic 45.0%
CCTACAGTTTCTGAGTTTCC+TGG - chr7_4:44336055-44336074 None:intergenic 45.0%
CCAGGAAACTCAGAAACTGT+AGG + chr7_4:44336052-44336071 Msa1156100:intron 45.0%
AACTCAGAAACTGTAGGGCT+AGG + chr7_4:44336058-44336077 Msa1156100:intron 45.0%
!! TATCAGCTCTCTGGTTTGCT+GGG - chr7_4:44336108-44336127 None:intergenic 45.0%
GCACATCTACTCTTACTGTG+TGG - chr7_4:44336131-44336150 None:intergenic 45.0%
TCTCTCAAGTAGTCTCGCAA+GGG + chr7_4:44336326-44336345 Msa1156100:intron 45.0%
ACACACTATCCTCCACGGAA+TGG + chr7_4:44333746-44333765 Msa1156100:five_prime_UTR 50.0%
CACACTATCCTCCACGGAAT+GGG + chr7_4:44333747-44333766 Msa1156100:five_prime_UTR 50.0%
ACACTATCCTCCACGGAATG+GGG + chr7_4:44333748-44333767 Msa1156100:five_prime_UTR 50.0%
ATTCATGTCTCCCCATTCCG+TGG - chr7_4:44333761-44333780 None:intergenic 50.0%
!! TGGTGATGACGGAAGGAGAA+GGG - chr7_4:44333892-44333911 None:intergenic 50.0%
!! ATGAAGAAGAGTGGTGGTGG+TGG - chr7_4:44333912-44333931 None:intergenic 50.0%
GCAATGAAGAAGAGTGGTGG+TGG - chr7_4:44333915-44333934 None:intergenic 50.0%
CTCGCAATGAAGAAGAGTGG+TGG - chr7_4:44333918-44333937 None:intergenic 50.0%
CACCACTCTTCTTCATTGCG+AGG + chr7_4:44333916-44333935 Msa1156100:CDS 50.0%
! CTTGCAGTGGATTCAACCGA+GGG - chr7_4:44334194-44334213 None:intergenic 50.0%
! TCTTGCAGTGGATTCAACCG+AGG - chr7_4:44334195-44334214 None:intergenic 50.0%
ACGAGCAAGTTGTCTTGCAG+TGG - chr7_4:44334207-44334226 None:intergenic 50.0%
AGTGCAGTGATAGCCCATAG+AGG - chr7_4:44334424-44334443 None:intergenic 50.0%
GTTTGGGAAACAGACTGTGC+AGG + chr7_4:44335113-44335132 Msa1156100:intron 50.0%
! TCTGTTCTAGCTGGTGTAGG+AGG + chr7_4:44335198-44335217 Msa1156100:CDS 50.0%
! CTGTTCTAGCTGGTGTAGGA+GGG + chr7_4:44335199-44335218 Msa1156100:CDS 50.0%
! TGTTCTAGCTGGTGTAGGAG+GGG + chr7_4:44335200-44335219 Msa1156100:CDS 50.0%
ATCTTCACCTGCTAGTGCAC+AGG + chr7_4:44335308-44335327 Msa1156100:CDS 50.0%
GTTGGATCACCAGAAGGATC+TGG - chr7_4:44335456-44335475 None:intergenic 50.0%
TCCTTCTGGTGATCCAACCA+AGG + chr7_4:44335458-44335477 Msa1156100:CDS 50.0%
ACCTTGGTTGGATCACCAGA+AGG - chr7_4:44335462-44335481 None:intergenic 50.0%
TCCTTTGTTGGGGTGTGAGT+TGG - chr7_4:44335718-44335737 None:intergenic 50.0%
TCACACCCCAACAAAGGACA+CGG + chr7_4:44335720-44335739 Msa1156100:intron 50.0%
TAGCTCCGTGTCCTTTGTTG+GGG - chr7_4:44335728-44335747 None:intergenic 50.0%
GTAGCTCCGTGTCCTTTGTT+GGG - chr7_4:44335729-44335748 None:intergenic 50.0%
AGCCCTTCCTGTGCTGAAAT+CGG - chr7_4:44335918-44335937 None:intergenic 50.0%
AGTTTCCTGGGCTTAGGATC+GGG - chr7_4:44336042-44336061 None:intergenic 50.0%
GAGTTTCCTGGGCTTAGGAT+CGG - chr7_4:44336043-44336062 None:intergenic 50.0%
AAACTGTAGGGCTAGGCCTA+GGG + chr7_4:44336065-44336084 Msa1156100:intron 50.0%
TGGGTGTATGTGTTTCCCCT+AGG - chr7_4:44336084-44336103 None:intergenic 50.0%
! GTATCAGCTCTCTGGTTTGC+TGG - chr7_4:44336109-44336128 None:intergenic 50.0%
ACTGTGTGGTATCAGCTCTC+TGG - chr7_4:44336117-44336136 None:intergenic 50.0%
CTCTCTCAAGTAGTCTCGCA+AGG + chr7_4:44336325-44336344 Msa1156100:intron 50.0%
ACTCCAGATTGCACTACTCC+TGG + chr7_4:44336582-44336601 Msa1156100:CDS 50.0%
ATTGTTGCGGTGGAGTGCAG+CGG - chr7_4:44333839-44333858 None:intergenic 55.0%
!! GTGGTGATGACGGAAGGAGA+AGG - chr7_4:44333893-44333912 None:intergenic 55.0%
!! AGTGGTGGTGGTGGTGATGA+CGG - chr7_4:44333903-44333922 None:intergenic 55.0%
AGGAGTGGGAATCGAGCACT+TGG + chr7_4:44334242-44334261 Msa1156100:CDS 55.0%
! CGCGAATAGCGGAAGATAGC+TGG - chr7_4:44334772-44334791 None:intergenic 55.0%
!!! TGCTGTTTTGGCGGCGCTTT+TGG - chr7_4:44335664-44335683 None:intergenic 55.0%
GCCAACTCACACCCCAACAA+AGG + chr7_4:44335714-44335733 Msa1156100:intron 55.0%
GGTAGCTCCGTGTCCTTTGT+TGG - chr7_4:44335730-44335749 None:intergenic 55.0%
! TTCTGGTGGCTTGCCTTCAG+TGG - chr7_4:44335941-44335960 None:intergenic 55.0%
GTTTCCTGGGCTTAGGATCG+GGG - chr7_4:44336041-44336060 None:intergenic 55.0%
GAAACTGTAGGGCTAGGCCT+AGG + chr7_4:44336064-44336083 Msa1156100:intron 55.0%
AACTGTAGGGCTAGGCCTAG+GGG + chr7_4:44336066-44336085 Msa1156100:intron 55.0%
!! GCTCTCTGGTTTGCTGGGTT+GGG - chr7_4:44336103-44336122 None:intergenic 55.0%
!! AGCTCTCTGGTTTGCTGGGT+TGG - chr7_4:44336104-44336123 None:intergenic 55.0%
CAGTTCTTCCAGAGGGACGA+CGG + chr7_4:44336544-44336563 Msa1156100:intron 55.0%
CTGCCAGGAGTAGTGCAATC+TGG - chr7_4:44336588-44336607 None:intergenic 55.0%
CATGTCTCCCCATTCCGTGG+AGG - chr7_4:44333758-44333777 None:intergenic 60.0%
!! GTGGTGGTGGTGATGACGGA+AGG - chr7_4:44333899-44333918 None:intergenic 60.0%
GAGAGAGACATCTCGAGGGG+AGG + chr7_4:44335818-44335837 Msa1156100:intron 60.0%
GAGACATCTCGAGGGGAGGA+CGG + chr7_4:44335822-44335841 Msa1156100:intron 60.0%
TCGAGGGGAGGACGGACAAA+GGG + chr7_4:44335830-44335849 Msa1156100:intron 60.0%
TCGAGCCTGAGGCTGTCTGT+GGG - chr7_4:44335877-44335896 None:intergenic 60.0%
TTGTCGTGGAGTCGAGCCTG+AGG - chr7_4:44335888-44335907 None:intergenic 60.0%
CACAGGAAGGGCTCCACTGA+AGG + chr7_4:44335925-44335944 Msa1156100:intron 60.0%
TCTTCCCCGATCCTAAGCCC+AGG + chr7_4:44336034-44336053 Msa1156100:intron 60.0%
GTTGAAAGCCGTCGTCCCTC+TGG - chr7_4:44336555-44336574 None:intergenic 60.0%
! TGGGGTGTGAGTTGGCCCTC+AGG - chr7_4:44335710-44335729 None:intergenic 65.0%
CTCGAGGGGAGGACGGACAA+AGG + chr7_4:44335829-44335848 Msa1156100:intron 65.0%
AGGGGAGGACGGACAAAGGG+AGG + chr7_4:44335833-44335852 Msa1156100:intron 65.0%
TGAGGCTGTCTGTGGGGTGG+GGG - chr7_4:44335870-44335889 None:intergenic 65.0%
CTGAGGCTGTCTGTGGGGTG+GGG - chr7_4:44335871-44335890 None:intergenic 65.0%
CCTGAGGCTGTCTGTGGGGT+GGG - chr7_4:44335872-44335891 None:intergenic 65.0%
CGAGCCTGAGGCTGTCTGTG+GGG - chr7_4:44335876-44335895 None:intergenic 65.0%
GTCGAGCCTGAGGCTGTCTG+TGG - chr7_4:44335878-44335897 None:intergenic 65.0%
GTTGCGGTGGAGTGCAGCGG+AGG - chr7_4:44333836-44333855 None:intergenic 70.0%
GCTGTCTGTGGGGTGGGGGT+GGG - chr7_4:44335866-44335885 None:intergenic 70.0%
CCCACCCCACAGACAGCCTC+AGG + chr7_4:44335869-44335888 Msa1156100:intron 70.0%
GCCTGAGGCTGTCTGTGGGG+TGG - chr7_4:44335873-44335892 None:intergenic 70.0%
GGCTGTCTGTGGGGTGGGGG+TGG - chr7_4:44335867-44335886 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 44333599 44337042 44333599 ID=Msa1156100;Name=Msa1156100
chr7_4 mRNA 44333599 44337042 44333599 ID=Msa1156100-mRNA-1;Parent=Msa1156100;Name=Msa1156100-mRNA-1;_AED=0.01;_eAED=0.01;_QI=176|1|1|1|1|1|5|394|311
chr7_4 exon 44333599 44333937 44333599 ID=Msa1156100-mRNA-1:exon:11268;Parent=Msa1156100-mRNA-1
chr7_4 exon 44334057 44334292 44334057 ID=Msa1156100-mRNA-1:exon:11269;Parent=Msa1156100-mRNA-1
chr7_4 exon 44334379 44334459 44334379 ID=Msa1156100-mRNA-1:exon:11270;Parent=Msa1156100-mRNA-1
chr7_4 exon 44335126 44335479 44335126 ID=Msa1156100-mRNA-1:exon:11271;Parent=Msa1156100-mRNA-1
chr7_4 exon 44336547 44337042 44336547 ID=Msa1156100-mRNA-1:exon:11272;Parent=Msa1156100-mRNA-1
chr7_4 five_prime_UTR 44333599 44333774 44333599 ID=Msa1156100-mRNA-1:five_prime_utr;Parent=Msa1156100-mRNA-1
chr7_4 CDS 44333775 44333937 44333775 ID=Msa1156100-mRNA-1:cds;Parent=Msa1156100-mRNA-1
chr7_4 CDS 44334057 44334292 44334057 ID=Msa1156100-mRNA-1:cds;Parent=Msa1156100-mRNA-1
chr7_4 CDS 44334379 44334459 44334379 ID=Msa1156100-mRNA-1:cds;Parent=Msa1156100-mRNA-1
chr7_4 CDS 44335126 44335479 44335126 ID=Msa1156100-mRNA-1:cds;Parent=Msa1156100-mRNA-1
chr7_4 CDS 44336547 44336648 44336547 ID=Msa1156100-mRNA-1:cds;Parent=Msa1156100-mRNA-1
chr7_4 three_prime_UTR 44336649 44337042 44336649 ID=Msa1156100-mRNA-1:three_prime_utr;Parent=Msa1156100-mRNA-1
Gene Sequence

>Msa1156100

ATGAATCTGACACCCGCACTTTCTTGTTCTTGTTCTCTCGCCGCTACTTCTTCTCTTTCCTCCGCTGCACTCCACCGCAACAATACATCCAACATAGTAGTACGTACATGCACACCCTTCTCCTTCCGTCATCACCACCACCACCACTCTTCTTCATTGCGAGTTGCCAATGATGCTGATAGGACCGAACTATCATCTGATACCACAGCTGAAAAATCATATTCAGATGTTGCTGATAAAATGGTTGATAGTATCGACTTTGGTGAGCTATGTAATGAGTTTGAGTGCAATAGTAGTCCCTCGGTTGAATCCACTGCAAGACAACTTGCTCGTGATATATTTGAGCTAAGGAGTGGGAATCGAGCACTTGGAACCTATGCTGTTTCTGTCACTTACAAGGATCCTATCAGGAGTTTTAGTGGTCGTGAAAAGTATAAGAGACCTCTATGGGCTATCACTGCACTTGAAAACCCATCTGTGACTGTGCAGGAAATGACAATGCTGTCAACAAGTGTTTTAAGTATCAAGTGGACAATTAGAGGGAAGCCTAAATCTGTTCTAGCTGGTGTAGGAGGGGAACTCATACTTAGAGTTACTTCCAAATTTACGCTTAACCAAATTAGTGGACAAGTCATTCAGCATGAAGAATTTTGGGACTTATCATCTTCACCTGCTAGTGCACAGGCATTTTTCTGGTCATCGCGTGTTCTGTTTGCTACGGTTGAATCTGTGAAAGATTTGGTTGATAGTGCCAAGAATTTGAGTGCTAATTTTTCACCCAAGAAAGAAGAGAACTCTGATATTTATCCAGATCCTTCTGGTGATCCAACCAAGTTCTTCCAGAGGGACGACGGCTTTCAACAAGATGTACTCCAGATTGCACTACTCCTGGCAGTTATATATTTTGTGGTACAAGTTCTGAGGATAACTTTGTAA

Protein sequence

>Msa1156100

MNLTPALSCSCSLAATSSLSSAALHRNNTSNIVVRTCTPFSFRHHHHHHSSSLRVANDADRTELSSDTTAEKSYSDVADKMVDSIDFGELCNEFECNSSPSVESTARQLARDIFELRSGNRALGTYAVSVTYKDPIRSFSGREKYKRPLWAITALENPSVTVQEMTMLSTSVLSIKWTIRGKPKSVLAGVGGELILRVTSKFTLNQISGQVIQHEEFWDLSSSPASAQAFFWSSRVLFATVESVKDLVDSAKNLSANFSPKKEENSDIYPDPSGDPTKFFQRDDGFQQDVLQIALLLAVIYFVVQVLRITL*