AlfalfaGEDB | Msa0098380

M. sativa cultivar zhongmu-4 / Msa0098380

KEGG: -
GO: -
PFAM: PF00481.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0098380	XP_003589034.1	98.256	344	6	0	1	344	1	344	0.0	705

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0098380	sp\|Q9XGZ9\|P2C72_ARATH	53.529	340	140	8	1	333	1	329	9.34e-105	313

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0098380	G7JMS8	98.256	344	6	0	1	344	1	344	0.0	705

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000800	Msa0098380	0.836843	7.378332e-57	-8.615850e-47
Msa0002690	Msa0098380	-0.806345	8.607437e-50	-8.615850e-47
Msa0002700	Msa0098380	-0.803477	3.422153e-49	-8.615850e-47
Msa0004180	Msa0098380	-0.848540	5.743174e-60	-8.615850e-47
Msa0004900	Msa0098380	0.802326	5.915918e-49	-8.615850e-47
Msa0004940	Msa0098380	0.899393	2.071322e-77	-8.615850e-47
Msa0004990	Msa0098380	0.893150	8.214415e-75	-8.615850e-47
Msa0005560	Msa0098380	0.800164	1.638506e-48	-8.615850e-47
Msa0011010	Msa0098380	0.857677	1.386807e-62	-8.615850e-47
Msa0011040	Msa0098380	0.860140	2.542089e-63	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0098380	MtrunA17_Chr1g0151781	98.256	344	6	0	1	344	1	344	0.0	705
Msa0098380	MtrunA17_Chr7g0249421	46.386	332	149	4	33	335	60	391	7.53e-97	296
Msa0098380	MtrunA17_Chr4g0022171	46.965	313	152	3	33	331	61	373	1.30e-96	294
Msa0098380	MtrunA17_Chr7g0243571	45.631	309	155	3	37	332	60	368	9.52e-96	291
Msa0098380	MtrunA17_Chr2g0324061	47.756	312	150	3	33	331	55	366	7.95e-94	287
Msa0098380	MtrunA17_Chr7g0221691	47.799	318	142	6	33	328	93	408	2.67e-93	285
Msa0098380	MtrunA17_Chr4g0004971	45.574	305	156	5	40	336	49	351	4.84e-86	263
Msa0098380	MtrunA17_Chr1g0192421	43.771	297	165	2	35	329	55	351	1.14e-84	259
Msa0098380	MtrunA17_Chr8g0342431	44.277	332	142	6	33	329	50	373	2.23e-82	256
Msa0098380	MtrunA17_Chr4g0067711	40.741	324	182	6	21	337	41	361	7.76e-82	253

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0098380	AT5G26010.1	53.529	340	140	8	1	333	1	329	9.50e-106	313
Msa0098380	AT4G32950.1	48.980	343	145	7	1	333	1	323	6.42e-101	301
Msa0098380	AT5G36250.1	45.758	330	152	5	33	335	62	391	2.80e-99	301
Msa0098380	AT1G16220.1	48.598	321	143	5	31	329	57	377	3.75e-98	299
Msa0098380	AT1G79630.1	43.750	368	157	5	11	336	48	407	8.08e-98	299
Msa0098380	AT1G03590.1	46.110	347	167	4	1	331	23	365	1.25e-97	297
Msa0098380	AT1G79630.8	43.750	368	157	5	11	336	44	403	1.33e-97	298
Msa0098380	AT5G36250.2	44.186	344	151	6	33	335	62	405	2.87e-95	291
Msa0098380	AT4G03415.1	47.712	306	145	5	41	331	70	375	3.45e-91	281
Msa0098380	AT4G03415.3	47.712	306	145	5	41	331	70	375	3.45e-91	281

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Find 75 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGGTGATACCAAATATC+TGG	0.385349	1_3:+4302044	None:intergenic
AAAGAAGTTTCCTTCCTCTA+GGG	0.562358	1_3:-4301791	Msa0098380:CDS
AAAGTCTCTTAGTCTCATTT+TGG	0.297664	1_3:+4304004	None:intergenic
AACCACATGTCCAACGAGTA+TGG	0.432459	1_3:-4302151	Msa0098380:CDS
AACCATACTCGTTGGACATG+TGG	0.563398	1_3:+4302149	None:intergenic
AACTTGGAGTATATGGACAG+TGG	0.675658	1_3:-4301721	Msa0098380:CDS
AAGAGAATAAGGAGTTGCAA+CGG	0.664540	1_3:-4302197	Msa0098380:CDS
AAGAGGTTGCATCAATTGTG+TGG	0.658363	1_3:-4301876	Msa0098380:CDS
AAGGATTATGGGATGAAAGA+TGG	0.481239	1_3:-4303330	Msa0098380:CDS
AATCTAGATTGTTCTTGTAG+TGG	0.537196	1_3:-4303072	Msa0098380:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGGCCATGCAAATTATTTAA+AGG	+	chr1_3:4301911-4301930	None:intergenic	30.0%
ATGAGAGAATTAAAACCTTG+TGG	+	chr1_3:4301931-4301950	None:intergenic	30.0%
TCTTCAAATTCTACACAACT+TGG	+	chr1_3:4302034-4302053	None:intergenic	30.0%
CAATCTGAGTCAAGATATTA+AGG	+	chr1_3:4302349-4302368	None:intergenic	30.0%
AGAAACAAAAGGGAGATATA+TGG	+	chr1_3:4302444-4302463	None:intergenic	30.0%
AATCTAGATTGTTCTTGTAG+TGG	-	chr1_3:4302732-4302751	Msa0098380:intron	30.0%
ATAATTGAAAAGAAGCTGCA+TGG	+	chr1_3:4303005-4303024	None:intergenic	30.0%
AACTGTTAAACTAAGGTGTA+TGG	+	chr1_3:4303198-4303217	None:intergenic	30.0%
CAAATAAGAGACTTCTAGAT+AGG	-	chr1_3:4303254-4303273	Msa0098380:CDS	30.0%
TTAAACGTCAATAATGACAC+AGG	-	chr1_3:4303403-4303422	Msa0098380:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	4301708	4304118	4301708	ID=Msa0098380;Name=Msa0098380
chr1_3	mRNA	4301708	4304118	4301708	ID=Msa0098380-mRNA-1;Parent=Msa0098380;Name=Msa0098380-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0\|0\|1\|1\|1\|5\|0\|344
chr1_3	exon	4303942	4304118	4303942	ID=Msa0098380-mRNA-1:exon:1477;Parent=Msa0098380-mRNA-1
chr1_3	exon	4303044	4303349	4303044	ID=Msa0098380-mRNA-1:exon:1476;Parent=Msa0098380-mRNA-1
chr1_3	exon	4302847	4302961	4302847	ID=Msa0098380-mRNA-1:exon:1475;Parent=Msa0098380-mRNA-1
chr1_3	exon	4302004	4302227	4302004	ID=Msa0098380-mRNA-1:exon:1474;Parent=Msa0098380-mRNA-1
chr1_3	exon	4301708	4301920	4301708	ID=Msa0098380-mRNA-1:exon:1473;Parent=Msa0098380-mRNA-1
chr1_3	CDS	4303942	4304118	4303942	ID=Msa0098380-mRNA-1:cds;Parent=Msa0098380-mRNA-1
chr1_3	CDS	4303044	4303349	4303044	ID=Msa0098380-mRNA-1:cds;Parent=Msa0098380-mRNA-1
chr1_3	CDS	4302847	4302961	4302847	ID=Msa0098380-mRNA-1:cds;Parent=Msa0098380-mRNA-1
chr1_3	CDS	4302004	4302227	4302004	ID=Msa0098380-mRNA-1:cds;Parent=Msa0098380-mRNA-1
chr1_3	CDS	4301708	4301920	4301708	ID=Msa0098380-mRNA-1:cds;Parent=Msa0098380-mRNA-1

Gene Sequence

>Msa0098380

ATGGGTATCTGCATATCCGTTGCATCTTCAGAGATTCATGGAATCCCTCAAGTTCATGATGAGAATGTCATGATATTTGAAGCAAGCAAGGTCCAAAATGAGACTAAGAGACTTTGCTCCGTTTACTCTAAACAAGGTACTAAGGGTCTCAACCAAGATGCTGCTTCTCTTCACCAGGATTATGGGATGAAAGATGGAGCATTTTGTGGTGTTTATGATGGACATGGAAAAAATGGACATATAGTGAGCAAAATAGTAAACAATACTTTACCATCTCTCATTTTGAGCCAAAAGAATGCTCTTGAGGAGATTAATACAACAAAAAATGGTGTTGACAACAAACAAAACAAATTTTCAAACAACTATCTAAGATGGAAAGAAGCTATTCTTGGAGCTTTCAATGTAATGGATGAAGAGGTGAAGCAACAAGAGAATCTAGATTGTTCTTGTAGTGGAACTACTGCTGTAGTTGTCATAAGACAGGGTGAAGGTCTTATCATAGTTAACCTTGGTGACTCAAGAGCAATATTAGGAACAATCCAAGATGAAAAACTAAAAGCCATTCAATTGACCACTGATTTGAAGCCTGGATTGCCTTGCGAAGCAAAGAGAATAAGGAGTTGCAACGGTTGTGTTTATGCGTTAAAGGAAGAACCACATGTCCAACGAGTATGGTTGCCCAATGAGAACTACCCTGGCCTAGCCATGTCTCGAGCTTTCGGAGATTTCATACTTAAAGACCATGGTGTTATTGCTACACCAGATATTTGGTATCACCGTTTAACATCAAGTGTCCAATTTATTGTTCTTGCAAGTGATGGGGTGTGGGATGTACTAAGTAATGAAGAGGTTGCATCAATTGTGTGGATGGTAGAGAGTGAAGAGGAAGCTGCAAGGGCAGTGGTGGAAGCAGCCACAGCTGCATGGGCAAAGAAGTTTCCTTCCTCTAGGGTAGATGATTGCACCGTGGTTTGCCATTTCCTGCAGAAGAAACCACAAAACTTGGAGTATATGGACAGTGGAAAATTAGGTTAA

Protein sequence

>Msa0098380

MGICISVASSEIHGIPQVHDENVMIFEASKVQNETKRLCSVYSKQGTKGLNQDAASLHQDYGMKDGAFCGVYDGHGKNGHIVSKIVNNTLPSLILSQKNALEEINTTKNGVDNKQNKFSNNYLRWKEAILGAFNVMDEEVKQQENLDCSCSGTTAVVVIRQGEGLIIVNLGDSRAILGTIQDEKLKAIQLTTDLKPGLPCEAKRIRSCNGCVYALKEEPHVQRVWLPNENYPGLAMSRAFGDFILKDHGVIATPDIWYHRLTSSVQFIVLASDGVWDVLSNEEVASIVWMVESEEEAARAVVEAATAAWAKKFPSSRVDDCTVVCHFLQKKPQNLEYMDSGKLG*