Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625510 | XP_003604116.1 | 89.518 | 353 | 31 | 2 | 63 | 411 | 31 | 381 | 0.0 | 629 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625510 | G7JUF2 | 89.518 | 353 | 31 | 2 | 63 | 411 | 31 | 381 | 0.0 | 629 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038860 | Msa0625510 | 0.814085 | 1.843384e-51 | -8.615850e-47 |
| Msa0617010 | Msa0625510 | 0.806540 | 7.828658e-50 | -8.615850e-47 |
| Msa0625510 | Msa0766880 | 0.808420 | 3.125056e-50 | -8.615850e-47 |
| Msa0625510 | Msa0786970 | 0.838720 | 2.432307e-57 | -8.615850e-47 |
| Msa0625510 | Msa0794040 | 0.802594 | 5.209878e-49 | -8.615850e-47 |
| Msa0625510 | Msa0799150 | 0.813716 | 2.222797e-51 | -8.615850e-47 |
| Msa0625510 | Msa0807840 | 0.808539 | 2.946709e-50 | -8.615850e-47 |
| Msa0625510 | Msa0822380 | 0.842808 | 2.062574e-58 | -8.615850e-47 |
| Msa0625510 | Msa1044520 | 0.827579 | 1.447137e-54 | -8.615850e-47 |
| Msa0625510 | Msa1057320 | 0.840902 | 6.574144e-58 | -8.615850e-47 |
| Msa0625510 | Msa1084630 | 0.846275 | 2.405895e-59 | -8.615850e-47 |
| Msa0625510 | Msa1132540 | 0.809657 | 1.698163e-50 | -8.615850e-47 |
| Msa0625510 | Msa1173410 | 0.801828 | 7.488511e-49 | -8.615850e-47 |
| Msa0625510 | Msa1175970 | 0.819031 | 1.437571e-52 | -8.615850e-47 |
| Msa0625510 | Msa1190320 | 0.813923 | 2.002174e-51 | -8.615850e-47 |
| Msa0625510 | Msa1199690 | 0.800573 | 1.352830e-48 | -8.615850e-47 |
| Msa0625510 | Msa1226330 | 0.811240 | 7.728595e-51 | -8.615850e-47 |
| Msa0625510 | Msa1264300 | 0.823082 | 1.677705e-53 | -8.615850e-47 |
| Msa0625510 | Msa1286910 | 0.814960 | 1.180537e-51 | -8.615850e-47 |
| Msa0625510 | Msa1316160 | 0.823425 | 1.394974e-53 | -8.615850e-47 |
| Msa0625510 | Msa1327040 | 0.808722 | 2.693704e-50 | -8.615850e-47 |
| Msa0625510 | Msa1351380 | 0.803938 | 2.745323e-49 | -8.615850e-47 |
| Msa0625510 | Msa1368180 | 0.821913 | 3.135760e-53 | -8.615850e-47 |
| Msa0625510 | Msa1385580 | 0.827573 | 1.452182e-54 | -8.615850e-47 |
| Msa0625510 | Msa1397040 | 0.808819 | 2.567248e-50 | -8.615850e-47 |
| Msa0625510 | Msa1400330 | 0.846177 | 2.558936e-59 | -8.615850e-47 |
| Msa0181740 | Msa0625510 | 0.804290 | 2.318596e-49 | -8.615850e-47 |
| Msa0186750 | Msa0625510 | 0.810814 | 9.560046e-51 | -8.615850e-47 |
| Msa0189880 | Msa0625510 | 0.807736 | 4.369480e-50 | -8.615850e-47 |
| Msa0190710 | Msa0625510 | 0.800824 | 1.202035e-48 | -8.615850e-47 |
| Msa0216010 | Msa0625510 | 0.848710 | 5.153342e-60 | -8.615850e-47 |
| Msa0216560 | Msa0625510 | 0.821542 | 3.821322e-53 | -8.615850e-47 |
| Msa0228320 | Msa0625510 | 0.944751 | 1.094490e-103 | -8.615850e-47 |
| Msa0369580 | Msa0625510 | 0.820233 | 7.644354e-53 | -8.615850e-47 |
| Msa0377460 | Msa0625510 | 0.812013 | 5.247559e-51 | -8.615850e-47 |
| Msa0417000 | Msa0625510 | 0.847116 | 1.417522e-59 | -8.615850e-47 |
| Msa0424940 | Msa0625510 | 0.809253 | 2.073488e-50 | -8.615850e-47 |
| Msa0426860 | Msa0625510 | 0.818960 | 1.492432e-52 | -8.615850e-47 |
| Msa0426890 | Msa0625510 | 0.826015 | 3.420178e-54 | -8.615850e-47 |
| Msa0439940 | Msa0625510 | 0.813274 | 2.780590e-51 | -8.615850e-47 |
| Msa0274530 | Msa0625510 | 0.853433 | 2.396726e-61 | -8.615850e-47 |
| Msa0274690 | Msa0625510 | 0.816251 | 6.089150e-52 | -8.615850e-47 |
| Msa0293000 | Msa0625510 | 0.823822 | 1.126215e-53 | -8.615850e-47 |
| Msa0295840 | Msa0625510 | 0.801395 | 9.188548e-49 | -8.615850e-47 |
| Msa0516340 | Msa0625510 | 0.814642 | 1.388570e-51 | -8.615850e-47 |
| Msa0517400 | Msa0625510 | 0.808362 | 3.214408e-50 | -8.615850e-47 |
| Msa0577920 | Msa0625510 | 0.928619 | 2.234552e-92 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625510 | MtrunA17_Chr4g0000091 | 89.518 | 353 | 31 | 2 | 63 | 411 | 31 | 381 | 0.0 | 629 |
| Msa0625510 | MtrunA17_Chr3g0127861 | 30.938 | 320 | 189 | 8 | 75 | 379 | 94 | 396 | 4.78e-40 | 147 |
| Msa0625510 | MtrunA17_Chr1g0189151 | 31.293 | 294 | 173 | 9 | 99 | 379 | 91 | 368 | 1.82e-36 | 137 |
| Msa0625510 | MtrunA17_Chr5g0395041 | 25.672 | 335 | 232 | 7 | 75 | 401 | 111 | 436 | 8.26e-30 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625510 | AT1G55960.1 | 59.509 | 326 | 122 | 4 | 94 | 411 | 77 | 400 | 4.21e-140 | 406 |
| Msa0625510 | AT3G13062.1 | 55.820 | 378 | 157 | 7 | 41 | 410 | 24 | 399 | 1.63e-139 | 404 |
| Msa0625510 | AT3G13062.2 | 55.820 | 378 | 157 | 7 | 41 | 410 | 24 | 399 | 6.60e-139 | 404 |
| Msa0625510 | AT3G13062.3 | 54.404 | 386 | 158 | 7 | 41 | 410 | 24 | 407 | 7.08e-137 | 398 |
| Msa0625510 | AT1G55960.2 | 53.067 | 326 | 118 | 5 | 94 | 411 | 77 | 375 | 2.61e-116 | 344 |
| Msa0625510 | AT1G64720.1 | 30.573 | 314 | 182 | 9 | 81 | 379 | 66 | 358 | 2.30e-40 | 148 |
| Msa0625510 | AT4G14500.1 | 32.016 | 253 | 161 | 5 | 92 | 337 | 129 | 377 | 7.85e-39 | 145 |
| Msa0625510 | AT5G54170.1 | 28.483 | 323 | 213 | 7 | 95 | 410 | 124 | 435 | 1.98e-36 | 139 |
| Msa0625510 | AT3G23080.2 | 31.481 | 216 | 139 | 4 | 98 | 306 | 88 | 301 | 1.27e-31 | 124 |
| Msa0625510 | AT3G23080.3 | 31.481 | 216 | 139 | 4 | 98 | 306 | 88 | 301 | 1.27e-31 | 124 |
| Msa0625510 | AT3G23080.1 | 31.472 | 197 | 127 | 3 | 117 | 306 | 137 | 332 | 1.39e-31 | 124 |
| Msa0625510 | AT4G14500.2 | 29.801 | 151 | 101 | 3 | 92 | 239 | 129 | 277 | 1.98e-17 | 82.8 |
Find 85 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTTAGGTTTGCAGGATT+TGG | 0.251778 | 4_3:-4598031 | None:intergenic |
| ATCAGTAACCTTAGGTTTGC+AGG | 0.256518 | 4_3:-4598037 | None:intergenic |
| ACTATTGGCTAACAACTTCT+TGG | 0.298347 | 4_3:-4601099 | None:intergenic |
| ATCTAAATGAGAATGCTAAA+TGG | 0.314684 | 4_3:+4597965 | Msa0625510:CDS |
| CCAATAGTGTGCTGCTTGTA+GGG | 0.339546 | 4_3:+4601114 | Msa0625510:CDS |
| GACCGTGTTCAATAATATTT+CGG | 0.348371 | 4_3:+4599142 | Msa0625510:CDS |
| CTAGAGAATACGTGCTAACT+TGG | 0.350444 | 4_3:+4599309 | Msa0625510:CDS |
| GTACCTAGATGGGTTTAAAT+TGG | 0.366540 | 4_3:-4597645 | None:intergenic |
| GCCAATAGTGTGCTGCTTGT+AGG | 0.372270 | 4_3:+4601113 | Msa0625510:CDS |
| AATATTGTTTGGTTGAAACT+TGG | 0.375184 | 4_3:+4601454 | Msa0625510:three_prime_UTR |
| ATGAACATCTATGGCAGTTC+GGG | 0.381365 | 4_3:+4597485 | Msa0625510:CDS |
| TTCAGTCAATTTAATGCAAA+AGG | 0.385709 | 4_3:+4600395 | Msa0625510:CDS |
| GAAATAGGTACGTACCTAGA+TGG | 0.396481 | 4_3:-4597656 | None:intergenic |
| TTAGGAATGTGAACATACTT+TGG | 0.398158 | 4_3:+4599830 | Msa0625510:intron |
| GACTGAACTGTTAACTGAAC+TGG | 0.403147 | 4_3:-4600379 | None:intergenic |
| GAATGTGGAGATGGCAAAAC+TGG | 0.403229 | 4_3:+4600275 | Msa0625510:CDS |
| AGAGAGATTCGTTGTGTGGA+GGG | 0.403527 | 4_3:+4597446 | Msa0625510:CDS |
| CTACCAATTTAAACCCATCT+AGG | 0.411083 | 4_3:+4597642 | Msa0625510:CDS |
| TCTAAATGAGAATGCTAAAT+GGG | 0.425962 | 4_3:+4597966 | Msa0625510:CDS |
| TTGGAAATTGTGGGAGGGGA+AGG | 0.429664 | 4_3:+4599328 | Msa0625510:CDS |
| TGGGTTTAAATTGGTAGAAT+CGG | 0.437970 | 4_3:-4597636 | None:intergenic |
| GTAAAGATGATGAACATCTA+TGG | 0.441520 | 4_3:+4597476 | Msa0625510:CDS |
| CCCTACAAGCAGCACACTAT+TGG | 0.441576 | 4_3:-4601114 | None:intergenic |
| GATGAACATCTATGGCAGTT+CGG | 0.444323 | 4_3:+4597484 | Msa0625510:CDS |
| ATGAAGGAGTATCACAAGAT+AGG | 0.454770 | 4_3:+4597380 | Msa0625510:CDS |
| TACAAAGCTCCATATGCCTT+TGG | 0.455824 | 4_3:-4600304 | None:intergenic |
| ACGTGCTAACTTGGAAATTG+TGG | 0.456235 | 4_3:+4599318 | Msa0625510:CDS |
| CAAGTTAGCACGTATTCTCT+AGG | 0.463689 | 4_3:-4599308 | None:intergenic |
| AAATCTGATGGTTCTGAAGT+TGG | 0.471935 | 4_3:+4599254 | Msa0625510:CDS |
| TGTATAGGTACCGGCTTGCT+TGG | 0.473815 | 4_3:+4600980 | Msa0625510:intron |
| TATTCTCTAGGTTTCAAAAG+AGG | 0.479731 | 4_3:-4599296 | None:intergenic |
| GTTTGATCATGAATGATAGT+AGG | 0.489865 | 4_3:-4601035 | None:intergenic |
| GGATGTTGTTGTTGTTGAAT+CGG | 0.499572 | 4_3:-4597603 | None:intergenic |
| CGTGCTAACTTGGAAATTGT+GGG | 0.500606 | 4_3:+4599319 | Msa0625510:CDS |
| CAATGACTACAGAAAACAAT+GGG | 0.504178 | 4_3:+4599193 | Msa0625510:CDS |
| CACGGCAGAATAAATATGTA+CGG | 0.508876 | 4_3:+4599856 | Msa0625510:CDS |
| AGATTCGTTGTGTGGAGGGG+AGG | 0.509697 | 4_3:+4597450 | Msa0625510:CDS |
| CTAGGTGCTAAAGTTGCAAT+GGG | 0.510640 | 4_3:+4601170 | Msa0625510:CDS |
| ATGTTTCATCAAGAAGATGC+TGG | 0.515286 | 4_3:+4600249 | Msa0625510:CDS |
| GGGAACACGGGGAGAAATGA+AGG | 0.518515 | 4_3:+4597364 | None:intergenic |
| CCTAGGTGCTAAAGTTGCAA+TGG | 0.518576 | 4_3:+4601169 | Msa0625510:CDS |
| TAACTTGGAAATTGTGGGAG+GGG | 0.526844 | 4_3:+4599324 | Msa0625510:CDS |
| ATTCTCTAGGTTTCAAAAGA+GGG | 0.532340 | 4_3:-4599295 | None:intergenic |
| TTGGCTAACAACTTCTTGGA+TGG | 0.533883 | 4_3:-4601095 | None:intergenic |
| TGCCAAATCCTGCAAACCTA+AGG | 0.543122 | 4_3:+4598029 | Msa0625510:CDS |
| AAATAGGTACGTACCTAGAT+GGG | 0.548158 | 4_3:-4597655 | None:intergenic |
| TCACGTGGTCACTCTAGCCT+AGG | 0.548358 | 4_3:+4601152 | Msa0625510:CDS |
| GAAGATACTCTGCTGCAAGC+TGG | 0.548902 | 4_3:+4600349 | Msa0625510:CDS |
| GAGAGATTCGTTGTGTGGAG+GGG | 0.551270 | 4_3:+4597447 | Msa0625510:CDS |
| ATCTCACAGGCATTTCTACC+AGG | 0.552255 | 4_3:-4600222 | None:intergenic |
| AAGAGAGATTCGTTGTGTGG+AGG | 0.557552 | 4_3:+4597445 | Msa0625510:CDS |
| GGTAGAATCGGAGACGAAAG+AGG | 0.558156 | 4_3:-4597624 | None:intergenic |
| GGTTGAGCACAATCAACTGC+AGG | 0.572742 | 4_3:+4599226 | Msa0625510:CDS |
| ATGAAACATTGTGATCTCAC+AGG | 0.577864 | 4_3:-4600235 | None:intergenic |
| ATGGAGCTTTGTATGCAAGA+TGG | 0.577968 | 4_3:+4600314 | Msa0625510:CDS |
| AGTATCACAAGATAGGTTTG+TGG | 0.584877 | 4_3:+4597387 | Msa0625510:CDS |
| CCATTGCAACTTTAGCACCT+AGG | 0.588447 | 4_3:-4601169 | None:intergenic |
| CTGCAGGTGGACAAATCTGA+TGG | 0.593077 | 4_3:+4599242 | Msa0625510:CDS |
| ACGGCAGAATAAATATGTAC+GGG | 0.595469 | 4_3:+4599857 | Msa0625510:CDS |
| CGTACATATTTATTCTGCCG+TGG | 0.595658 | 4_3:-4599855 | None:intergenic |
| GTGAACATACTTTGGCTCCA+CGG | 0.602406 | 4_3:+4599838 | Msa0625510:CDS |
| TAAAAGAGAGATTCGTTGTG+TGG | 0.605518 | 4_3:+4597442 | Msa0625510:CDS |
| CTAACTTGGAAATTGTGGGA+GGG | 0.610138 | 4_3:+4599323 | Msa0625510:CDS |
| GTCACACTCAAATATCTCAA+GGG | 0.610413 | 4_3:-4599122 | None:intergenic |
| TGCTGGTTTGAATGTGGAGA+TGG | 0.613421 | 4_3:+4600266 | Msa0625510:CDS |
| TTGTACGATTTATGTATACG+TGG | 0.613425 | 4_3:+4601337 | Msa0625510:three_prime_UTR |
| GTCATGTATAATTTATGACA+TGG | 0.615943 | 4_3:+4601519 | Msa0625510:three_prime_UTR |
| CAATAGTGTGCTGCTTGTAG+GGG | 0.617598 | 4_3:+4601115 | Msa0625510:CDS |
| TGTACGATTTATGTATACGT+GGG | 0.620327 | 4_3:+4601338 | Msa0625510:three_prime_UTR |
| GGTCACACTCAAATATCTCA+AGG | 0.625085 | 4_3:-4599123 | None:intergenic |
| GTACTAGATTCCAAGCAAGC+CGG | 0.626519 | 4_3:-4600990 | None:intergenic |
| AATAGTGTGCTGCTTGTAGG+GGG | 0.627038 | 4_3:+4601116 | Msa0625510:CDS |
| AGAAGATGCTGGTTTGAATG+TGG | 0.629014 | 4_3:+4600260 | Msa0625510:CDS |
| TTCATTTGTCACAATCTCCG+AGG | 0.636784 | 4_3:-4597908 | None:intergenic |
| TGAGCACAATCAACTGCAGG+TGG | 0.636879 | 4_3:+4599229 | Msa0625510:CDS |
| TGTCATCAATTGCAGAACCT+CGG | 0.647597 | 4_3:+4597891 | Msa0625510:intron |
| GATGCTAAGAAACTTCTACA+TGG | 0.648028 | 4_3:+4599169 | Msa0625510:CDS |
| TCACACTCAAATATCTCAAG+GGG | 0.652492 | 4_3:-4599121 | None:intergenic |
| GCTAACTTGGAAATTGTGGG+AGG | 0.653551 | 4_3:+4599322 | Msa0625510:CDS |
| ACAATGACTACAGAAAACAA+TGG | 0.653588 | 4_3:+4599192 | Msa0625510:CDS |
| AGCCGAAATATTATTGAACA+CGG | 0.666524 | 4_3:-4599144 | None:intergenic |
| AAGTGCGTGTGATATCAAGA+AGG | 0.674822 | 4_3:+4601072 | Msa0625510:CDS |
| TCTGGCTGGCGAATAAGACA+AGG | 0.684761 | 4_3:+4599894 | Msa0625510:CDS |
| AAAACAATGGGATAAGACAG+TGG | 0.709971 | 4_3:+4599205 | Msa0625510:CDS |
| GGTGCAATATGTCTGTCACG+TGG | 0.761442 | 4_3:+4601137 | Msa0625510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTATTTATAAATTAAA+TGG | + | chr4_3:4598701-4598720 | Msa0625510:intron | 0.0% |
| !!! | TATAATTAGTTATATGTTTT+AGG | + | chr4_3:4598980-4598999 | Msa0625510:intron | 10.0% |
| !!! | TGTAATTTTAAATTTGAATT+TGG | + | chr4_3:4599037-4599056 | Msa0625510:intron | 10.0% |
| !! | AGTAATTAAAATTTAAAAGT+TGG | - | chr4_3:4600611-4600630 | None:intergenic | 10.0% |
| !! | AAATTAAATCAATTAATCAA+TGG | - | chr4_3:4600835-4600854 | None:intergenic | 10.0% |
| !!! | TCATATATTTTGTGAAATTT+AGG | + | chr4_3:4597710-4597729 | Msa0625510:intron | 15.0% |
| !!! | CATATATTTTGTGAAATTTA+GGG | + | chr4_3:4597711-4597730 | Msa0625510:intron | 15.0% |
| !! | GACATTATTATAATTTATCT+TGG | + | chr4_3:4598082-4598101 | Msa0625510:intron | 15.0% |
| !!! | ATTTATATTTTTCCTTAACT+TGG | - | chr4_3:4598338-4598357 | None:intergenic | 15.0% |
| !!! | ATTAGAAACAATATTTTAAC+TGG | + | chr4_3:4598840-4598859 | Msa0625510:intron | 15.0% |
| !!! | AACATTTTACTGTTATATAA+AGG | + | chr4_3:4599355-4599374 | Msa0625510:CDS | 15.0% |
| !!! | AATTTTTTTCTTTTCATCTT+TGG | + | chr4_3:4599797-4599816 | Msa0625510:intron | 15.0% |
| !! | ACAACGAAATATAAATAAAA+AGG | - | chr4_3:4600134-4600153 | None:intergenic | 15.0% |
| !!! | AAATTTAAAAGTTGGTTTAT+TGG | - | chr4_3:4600603-4600622 | None:intergenic | 15.0% |
| !! | AAGTAAAATGAAATTGAAGA+AGG | - | chr4_3:4597684-4597703 | None:intergenic | 20.0% |
| !! | TTGATTGTAAAACTGTTATA+TGG | - | chr4_3:4597819-4597838 | None:intergenic | 20.0% |
| !!! | GAAGTTTTTAATGATGATTT+TGG | + | chr4_3:4597936-4597955 | Msa0625510:CDS | 20.0% |
| !!! | TTTTTAATGATGATTTTGGA+TGG | + | chr4_3:4597940-4597959 | Msa0625510:CDS | 20.0% |
| !! | CATTTCAAGAATGATATTAA+AGG | - | chr4_3:4598636-4598655 | None:intergenic | 20.0% |
| !!! | AAATGGAAGATATTTTTTGT+TGG | + | chr4_3:4598718-4598737 | Msa0625510:intron | 20.0% |
| !!! | AATATTGTTTCTAATCATCT+TGG | - | chr4_3:4598835-4598854 | None:intergenic | 20.0% |
| !!! | CTTTTTTGAATAAACATGTT+TGG | - | chr4_3:4598903-4598922 | None:intergenic | 20.0% |
| !! | GGAGTTTAAATTTAATTCTT+TGG | + | chr4_3:4599001-4599020 | Msa0625510:intron | 20.0% |
| !!! | ATTTAAAATTACATGCTTGA+AGG | - | chr4_3:4599030-4599049 | None:intergenic | 20.0% |
| !! | TTCTTGATCAATATATTTCT+AGG | - | chr4_3:4599571-4599590 | None:intergenic | 20.0% |
| !!! | TTTTTCCGTGAATTTTTTAT+GGG | + | chr4_3:4599939-4599958 | Msa0625510:intron | 20.0% |
| !! | ATATTCCCATAAAAAATTCA+CGG | - | chr4_3:4599947-4599966 | None:intergenic | 20.0% |
| !!! | TTTTTCTATCCTCATAAAAA+TGG | + | chr4_3:4599986-4600005 | Msa0625510:intron | 20.0% |
| !!! | TCAACATTTAATGTATTTTC+TGG | + | chr4_3:4600444-4600463 | Msa0625510:intron | 20.0% |
| !! | TGCCTTGTAAATTATAATTA+CGG | + | chr4_3:4600495-4600514 | Msa0625510:intron | 20.0% |
| !! | TCAAAATAAAATGCTAAAGA+TGG | + | chr4_3:4600550-4600569 | Msa0625510:intron | 20.0% |
| !! | TTAAGTTAAATGAAAGAATG+CGG | - | chr4_3:4600719-4600738 | None:intergenic | 20.0% |
| !! | AGTTCACTAAAAATATTGTT+TGG | + | chr4_3:4601443-4601462 | Msa0625510:three_prime_UTR | 20.0% |
| ! | AAATTGAAGAAGGAAGAAAT+AGG | - | chr4_3:4597674-4597693 | None:intergenic | 25.0% |
| ! | ATCTAAATGAGAATGCTAAA+TGG | + | chr4_3:4597965-4597984 | Msa0625510:CDS | 25.0% |
| ! | TCTAAATGAGAATGCTAAAT+GGG | + | chr4_3:4597966-4597985 | Msa0625510:CDS | 25.0% |
| ! | ATCATATAACAATTCAAGCT+TGG | - | chr4_3:4598163-4598182 | None:intergenic | 25.0% |
| !! | AATCTATTTTGTCCAAGTTA+AGG | + | chr4_3:4598323-4598342 | Msa0625510:intron | 25.0% |
| ! | AAAATTTGAATGAACTATGC+TGG | + | chr4_3:4598607-4598626 | Msa0625510:intron | 25.0% |
| !!! | TAAGAAAAATTGACTTGTGT+AGG | - | chr4_3:4598962-4598981 | None:intergenic | 25.0% |
| ! | AGAAATTAGAGATTAGAACT+TGG | + | chr4_3:4599587-4599606 | Msa0625510:intron | 25.0% |
| ! | TGATAATAGTGATATACTAG+TGG | - | chr4_3:4599642-4599661 | None:intergenic | 25.0% |
| ! | TGTGCAAATATTTGAGAATA+TGG | - | chr4_3:4599672-4599691 | None:intergenic | 25.0% |
| !! | TTCTCATTCTGTACATATTT+TGG | + | chr4_3:4599708-4599727 | Msa0625510:intron | 25.0% |
| !! | GTTTTTCCGTGAATTTTTTA+TGG | + | chr4_3:4599938-4599957 | Msa0625510:intron | 25.0% |
| ! | TTCAGTCAATTTAATGCAAA+AGG | + | chr4_3:4600395-4600414 | Msa0625510:CDS | 25.0% |
| ! | GCCTTGTAAATTATAATTAC+GGG | + | chr4_3:4600496-4600515 | Msa0625510:intron | 25.0% |
| ! | TCCCGTAATTATAATTTACA+AGG | - | chr4_3:4600500-4600519 | None:intergenic | 25.0% |
| ! | CTCAATGAAAAATTTCCATA+GGG | - | chr4_3:4600769-4600788 | None:intergenic | 25.0% |
| ! | ACTCAATGAAAAATTTCCAT+AGG | - | chr4_3:4600770-4600789 | None:intergenic | 25.0% |
| !! | GGATTGTTTGTTAGTTATAT+CGG | - | chr4_3:4600956-4600975 | None:intergenic | 25.0% |
| ! | AATATTGTTTGGTTGAAACT+TGG | + | chr4_3:4601454-4601473 | Msa0625510:three_prime_UTR | 25.0% |
| ! | GTCATGTATAATTTATGACA+TGG | + | chr4_3:4601519-4601538 | Msa0625510:three_prime_UTR | 25.0% |
| GTAAAGATGATGAACATCTA+TGG | + | chr4_3:4597476-4597495 | Msa0625510:CDS | 30.0% | |
| TGGGTTTAAATTGGTAGAAT+CGG | - | chr4_3:4597639-4597658 | None:intergenic | 30.0% | |
| ACAATAGTTTCACTGGAATA+TGG | + | chr4_3:4597737-4597756 | Msa0625510:intron | 30.0% | |
| GAGAATAAGGACTTTACTTT+AGG | + | chr4_3:4597759-4597778 | Msa0625510:intron | 30.0% | |
| ! | AAGGACTTTACTTTAGGAAT+AGG | + | chr4_3:4597765-4597784 | Msa0625510:intron | 30.0% |
| ATGGACATGAATGATATACA+AGG | - | chr4_3:4597800-4597819 | None:intergenic | 30.0% | |
| AGGATAAAATCAGTAACCTT+AGG | - | chr4_3:4598048-4598067 | None:intergenic | 30.0% | |
| !!! | TACTGATTTTATCCTTCAAC+TGG | + | chr4_3:4598053-4598072 | Msa0625510:intron | 30.0% |
| !! | ACTGATTTTATCCTTCAACT+GGG | + | chr4_3:4598054-4598073 | Msa0625510:intron | 30.0% |
| TAATTTATCTTGGCTACTCT+TGG | + | chr4_3:4598092-4598111 | Msa0625510:intron | 30.0% | |
| ATAACAATTCAAGCTTGGTA+TGG | - | chr4_3:4598158-4598177 | None:intergenic | 30.0% | |
| TTAGAAAAAGGGAAAACATG+GGG | - | chr4_3:4598197-4598216 | None:intergenic | 30.0% | |
| GTTAGAAAAAGGGAAAACAT+GGG | - | chr4_3:4598198-4598217 | None:intergenic | 30.0% | |
| AGTTAGAAAAAGGGAAAACA+TGG | - | chr4_3:4598199-4598218 | None:intergenic | 30.0% | |
| CATTGTGCAAGTTAGAAAAA+GGG | - | chr4_3:4598208-4598227 | None:intergenic | 30.0% | |
| ACATTGTGCAAGTTAGAAAA+AGG | - | chr4_3:4598209-4598228 | None:intergenic | 30.0% | |
| ACCTCCTAAAATACAAGTTT+AGG | + | chr4_3:4598558-4598577 | Msa0625510:intron | 30.0% | |
| CCTCCTAAAATACAAGTTTA+GGG | + | chr4_3:4598559-4598578 | Msa0625510:intron | 30.0% | |
| ! | TGTCCCTAAACTTGTATTTT+AGG | - | chr4_3:4598565-4598584 | None:intergenic | 30.0% |
| AAATACAAGTTTAGGGACAA+AGG | + | chr4_3:4598566-4598585 | Msa0625510:intron | 30.0% | |
| !!! | TGGAAGATATTTTTTGTTGG+TGG | + | chr4_3:4598721-4598740 | Msa0625510:intron | 30.0% |
| !!! | TATTTTTTGTTGGTGGTGTA+AGG | + | chr4_3:4598728-4598747 | Msa0625510:intron | 30.0% |
| !!! | ATTTTTTGTTGGTGGTGTAA+GGG | + | chr4_3:4598729-4598748 | Msa0625510:intron | 30.0% |
| !!! | ATTTTATTGTTGTTTCTCCC+TGG | + | chr4_3:4599084-4599103 | Msa0625510:intron | 30.0% |
| GACCGTGTTCAATAATATTT+CGG | + | chr4_3:4599142-4599161 | Msa0625510:CDS | 30.0% | |
| AGCCGAAATATTATTGAACA+CGG | - | chr4_3:4599147-4599166 | None:intergenic | 30.0% | |
| ACAATGACTACAGAAAACAA+TGG | + | chr4_3:4599192-4599211 | Msa0625510:CDS | 30.0% | |
| CAATGACTACAGAAAACAAT+GGG | + | chr4_3:4599193-4599212 | Msa0625510:CDS | 30.0% | |
| ATTCTCTAGGTTTCAAAAGA+GGG | - | chr4_3:4599298-4599317 | None:intergenic | 30.0% | |
| TATTCTCTAGGTTTCAAAAG+AGG | - | chr4_3:4599299-4599318 | None:intergenic | 30.0% | |
| AAAGGTAATACATCCGATTA+TGG | + | chr4_3:4599373-4599392 | Msa0625510:intron | 30.0% | |
| AAGGTAATACATCCGATTAT+GGG | + | chr4_3:4599374-4599393 | Msa0625510:intron | 30.0% | |
| ACATGTGCATTAACACTAAA+AGG | - | chr4_3:4599432-4599451 | None:intergenic | 30.0% | |
| TTCTCATATGGATGTTGTTA+TGG | + | chr4_3:4599477-4599496 | Msa0625510:intron | 30.0% | |
| TCTCATATGGATGTTGTTAT+GGG | + | chr4_3:4599478-4599497 | Msa0625510:intron | 30.0% | |
| AATTCTTCTTGTTCAATGAC+AGG | - | chr4_3:4599546-4599565 | None:intergenic | 30.0% | |
| ATATTTGAGAATATGGTGAC+TGG | - | chr4_3:4599665-4599684 | None:intergenic | 30.0% | |
| TCATTGCTTGAAAAAAAGGT+AGG | - | chr4_3:4599767-4599786 | None:intergenic | 30.0% | |
| GCAATCATTGCTTGAAAAAA+AGG | - | chr4_3:4599771-4599790 | None:intergenic | 30.0% | |
| TTAGGAATGTGAACATACTT+TGG | + | chr4_3:4599830-4599849 | Msa0625510:intron | 30.0% | |
| !! | AGATCTTCACCATTTTTATG+AGG | - | chr4_3:4599998-4600017 | None:intergenic | 30.0% |
| ! | TGTATTTCCGTGCATTTTTA+TGG | + | chr4_3:4600086-4600105 | Msa0625510:intron | 30.0% |
| TTAACCTCCATAAAAATGCA+CGG | - | chr4_3:4600096-4600115 | None:intergenic | 30.0% | |
| TTTATTGGTAAACGACGTAA+CGG | - | chr4_3:4600588-4600607 | None:intergenic | 30.0% | |
| AAAATAAATAGCCTACCCTA+TGG | + | chr4_3:4600751-4600770 | Msa0625510:intron | 30.0% | |
| ATGAAAAATTTCCATAGGGT+AGG | - | chr4_3:4600765-4600784 | None:intergenic | 30.0% | |
| ! | TCTTTTGTGTGTATCATTCT+TGG | + | chr4_3:4600861-4600880 | Msa0625510:intron | 30.0% |
| TTAAGCTACATATCGCAATT+AGG | - | chr4_3:4600925-4600944 | None:intergenic | 30.0% | |
| GTTTGATCATGAATGATAGT+AGG | - | chr4_3:4601038-4601057 | None:intergenic | 30.0% | |
| TTGTACGATTTATGTATACG+TGG | + | chr4_3:4601337-4601356 | Msa0625510:three_prime_UTR | 30.0% | |
| TGTACGATTTATGTATACGT+GGG | + | chr4_3:4601338-4601357 | Msa0625510:three_prime_UTR | 30.0% | |
| !! | ATGAAGGAGTATCACAAGAT+AGG | + | chr4_3:4597380-4597399 | Msa0625510:CDS | 35.0% |
| AGTATCACAAGATAGGTTTG+TGG | + | chr4_3:4597387-4597406 | Msa0625510:CDS | 35.0% | |
| TAAAAGAGAGATTCGTTGTG+TGG | + | chr4_3:4597442-4597461 | Msa0625510:CDS | 35.0% | |
| ! | GGATGTTGTTGTTGTTGAAT+CGG | - | chr4_3:4597606-4597625 | None:intergenic | 35.0% |
| CTACCAATTTAAACCCATCT+AGG | + | chr4_3:4597642-4597661 | Msa0625510:CDS | 35.0% | |
| ! | GTACCTAGATGGGTTTAAAT+TGG | - | chr4_3:4597648-4597667 | None:intergenic | 35.0% |
| AAATAGGTACGTACCTAGAT+GGG | - | chr4_3:4597658-4597677 | None:intergenic | 35.0% | |
| TCACTGGAATATGGAGAATA+AGG | + | chr4_3:4597746-4597765 | Msa0625510:intron | 35.0% | |
| ! | GACTTTACTTTAGGAATAGG+AGG | + | chr4_3:4597768-4597787 | Msa0625510:intron | 35.0% |
| ! | CTGATTTTATCCTTCAACTG+GGG | + | chr4_3:4598055-4598074 | Msa0625510:intron | 35.0% |
| !! | CCCTAAACTTGTATTTTAGG+AGG | - | chr4_3:4598562-4598581 | None:intergenic | 35.0% |
| AACAATAGCTCAACACCTAA+AGG | - | chr4_3:4598761-4598780 | None:intergenic | 35.0% | |
| !!! | CAATATTTTAACTGGACACC+CGG | + | chr4_3:4598848-4598867 | Msa0625510:intron | 35.0% |
| ATGTGTCAAACACTCTTAAC+CGG | - | chr4_3:4598870-4598889 | None:intergenic | 35.0% | |
| ACAATCAACCTATCAAGCAT+GGG | - | chr4_3:4598933-4598952 | None:intergenic | 35.0% | |
| TCACACTCAAATATCTCAAG+GGG | - | chr4_3:4599124-4599143 | None:intergenic | 35.0% | |
| GTCACACTCAAATATCTCAA+GGG | - | chr4_3:4599125-4599144 | None:intergenic | 35.0% | |
| GATGCTAAGAAACTTCTACA+TGG | + | chr4_3:4599169-4599188 | Msa0625510:CDS | 35.0% | |
| AAAACAATGGGATAAGACAG+TGG | + | chr4_3:4599205-4599224 | Msa0625510:CDS | 35.0% | |
| !! | AAATCTGATGGTTCTGAAGT+TGG | + | chr4_3:4599254-4599273 | Msa0625510:CDS | 35.0% |
| AGGTAATACATCCGATTATG+GGG | + | chr4_3:4599375-4599394 | Msa0625510:intron | 35.0% | |
| TATCAATGCAACCCCATAAT+CGG | - | chr4_3:4599389-4599408 | None:intergenic | 35.0% | |
| TACAGAATGAGAAGTCAGAA+CGG | - | chr4_3:4599701-4599720 | None:intergenic | 35.0% | |
| ATCTTTGGTGAAACCTTGTT+AGG | + | chr4_3:4599812-4599831 | Msa0625510:intron | 35.0% | |
| GTATGTTCACATTCCTAACA+AGG | - | chr4_3:4599828-4599847 | None:intergenic | 35.0% | |
| CACGGCAGAATAAATATGTA+CGG | + | chr4_3:4599856-4599875 | Msa0625510:CDS | 35.0% | |
| ACGGCAGAATAAATATGTAC+GGG | + | chr4_3:4599857-4599876 | Msa0625510:CDS | 35.0% | |
| ! | ATTTCCGTGCATTTTTATGG+AGG | + | chr4_3:4600089-4600108 | Msa0625510:intron | 35.0% |
| TCACAAAACAGTCATGTCAT+AGG | - | chr4_3:4600184-4600203 | None:intergenic | 35.0% | |
| ATGAAACATTGTGATCTCAC+AGG | - | chr4_3:4600238-4600257 | None:intergenic | 35.0% | |
| ATGTTTCATCAAGAAGATGC+TGG | + | chr4_3:4600249-4600268 | Msa0625510:CDS | 35.0% | |
| ! | AATTTACAAGGCATCAGCAT+GGG | - | chr4_3:4600488-4600507 | None:intergenic | 35.0% |
| ! | TAATTTACAAGGCATCAGCA+TGG | - | chr4_3:4600489-4600508 | None:intergenic | 35.0% |
| GCACTTGAAATGAAAGAGAT+CGG | - | chr4_3:4600689-4600708 | None:intergenic | 35.0% | |
| ACAAACAATCCCTTGTGTAT+AGG | + | chr4_3:4600965-4600984 | Msa0625510:intron | 35.0% | |
| ! | ACTATTGGCTAACAACTTCT+TGG | - | chr4_3:4601102-4601121 | None:intergenic | 35.0% |
| !!! | TCACTCAGCTTTGTTTTGTT+TGG | - | chr4_3:4601238-4601257 | None:intergenic | 35.0% |
| CTCAACGTGACTCAAAAATT+TGG | + | chr4_3:4601404-4601423 | Msa0625510:three_prime_UTR | 35.0% | |
| GATGAACATCTATGGCAGTT+CGG | + | chr4_3:4597484-4597503 | Msa0625510:CDS | 40.0% | |
| ATGAACATCTATGGCAGTTC+GGG | + | chr4_3:4597485-4597504 | Msa0625510:CDS | 40.0% | |
| GAAATAGGTACGTACCTAGA+TGG | - | chr4_3:4597659-4597678 | None:intergenic | 40.0% | |
| AGGGCTTACAATAGTTTCAC+TGG | + | chr4_3:4597730-4597749 | Msa0625510:intron | 40.0% | |
| TGTCATCAATTGCAGAACCT+CGG | + | chr4_3:4597891-4597910 | Msa0625510:intron | 40.0% | |
| TTCATTTGTCACAATCTCCG+AGG | - | chr4_3:4597911-4597930 | None:intergenic | 40.0% | |
| AACCTTAGGTTTGCAGGATT+TGG | - | chr4_3:4598034-4598053 | None:intergenic | 40.0% | |
| ATCAGTAACCTTAGGTTTGC+AGG | - | chr4_3:4598040-4598059 | None:intergenic | 40.0% | |
| AATGTCTATACCCCAGTTGA+AGG | - | chr4_3:4598068-4598087 | None:intergenic | 40.0% | |
| ! | TTCTAACTTGCACAATGTGC+TGG | + | chr4_3:4598211-4598230 | Msa0625510:intron | 40.0% |
| ! | TCTAACTTGCACAATGTGCT+GGG | + | chr4_3:4598212-4598231 | Msa0625510:intron | 40.0% |
| CTGCATTTATGTCAGTGACT+AGG | - | chr4_3:4598241-4598260 | None:intergenic | 40.0% | |
| TCAACTAAATGCTGCTCAGA+TGG | - | chr4_3:4598464-4598483 | None:intergenic | 40.0% | |
| TAGGGACAAAGGATGAATAG+AGG | + | chr4_3:4598577-4598596 | Msa0625510:intron | 40.0% | |
| !! | TAGGTGTTGAGCTATTGTTG+AGG | + | chr4_3:4598762-4598781 | Msa0625510:intron | 40.0% |
| GTTTGTGTCTCAGCTGTATT+TGG | + | chr4_3:4598802-4598821 | Msa0625510:intron | 40.0% | |
| TGTGTCAAACACTCTTAACC+GGG | - | chr4_3:4598869-4598888 | None:intergenic | 40.0% | |
| GACAATCAACCTATCAAGCA+TGG | - | chr4_3:4598934-4598953 | None:intergenic | 40.0% | |
| GGTCACACTCAAATATCTCA+AGG | - | chr4_3:4599126-4599145 | None:intergenic | 40.0% | |
| CAAGTTAGCACGTATTCTCT+AGG | - | chr4_3:4599311-4599330 | None:intergenic | 40.0% | |
| CTAGAGAATACGTGCTAACT+TGG | + | chr4_3:4599309-4599328 | Msa0625510:CDS | 40.0% | |
| ACGTGCTAACTTGGAAATTG+TGG | + | chr4_3:4599318-4599337 | Msa0625510:CDS | 40.0% | |
| CGTGCTAACTTGGAAATTGT+GGG | + | chr4_3:4599319-4599338 | Msa0625510:CDS | 40.0% | |
| CTAACTTGGAAATTGTGGGA+GGG | + | chr4_3:4599323-4599342 | Msa0625510:CDS | 40.0% | |
| TAACTTGGAAATTGTGGGAG+GGG | + | chr4_3:4599324-4599343 | Msa0625510:CDS | 40.0% | |
| ! | ATGACAGGACAAAAAGTGCA+GGG | - | chr4_3:4599531-4599550 | None:intergenic | 40.0% |
| ! | AATGACAGGACAAAAAGTGC+AGG | - | chr4_3:4599532-4599551 | None:intergenic | 40.0% |
| CGTACATATTTATTCTGCCG+TGG | - | chr4_3:4599858-4599877 | None:intergenic | 40.0% | |
| !! | TTGAGTTTTTCAGATCTGGC+TGG | + | chr4_3:4599880-4599899 | Msa0625510:CDS | 40.0% |
| ! | TGACATGACTGTTTTGTGAC+TGG | + | chr4_3:4600185-4600204 | Msa0625510:intron | 40.0% |
| CTGGCGATTATTATAGTACC+TGG | + | chr4_3:4600204-4600223 | Msa0625510:intron | 40.0% | |
| !! | AGAAGATGCTGGTTTGAATG+TGG | + | chr4_3:4600260-4600279 | Msa0625510:CDS | 40.0% |
| ! | GCAAAACTGGCATTTTCCAA+AGG | + | chr4_3:4600288-4600307 | Msa0625510:CDS | 40.0% |
| !! | TGGCATTTTCCAAAGGCATA+TGG | + | chr4_3:4600295-4600314 | Msa0625510:CDS | 40.0% |
| TACAAAGCTCCATATGCCTT+TGG | - | chr4_3:4600307-4600326 | None:intergenic | 40.0% | |
| ! | ATGGAGCTTTGTATGCAAGA+TGG | + | chr4_3:4600314-4600333 | Msa0625510:CDS | 40.0% |
| GACTGAACTGTTAACTGAAC+TGG | - | chr4_3:4600382-4600401 | None:intergenic | 40.0% | |
| ATCAGCATGGGAAAATTGGA+AGG | - | chr4_3:4600476-4600495 | None:intergenic | 40.0% | |
| GCATGATGTATAACGTAGAC+AGG | - | chr4_3:4600635-4600654 | None:intergenic | 40.0% | |
| TTTCCTGCAACTGTGTTCTT+TGG | + | chr4_3:4600802-4600821 | Msa0625510:intron | 40.0% | |
| TTCCTGCAACTGTGTTCTTT+GGG | + | chr4_3:4600803-4600822 | Msa0625510:intron | 40.0% | |
| AATCCCTTGTGTATAGGTAC+CGG | + | chr4_3:4600971-4600990 | Msa0625510:intron | 40.0% | |
| AAGTGCGTGTGATATCAAGA+AGG | + | chr4_3:4601072-4601091 | Msa0625510:CDS | 40.0% | |
| TTGGCTAACAACTTCTTGGA+TGG | - | chr4_3:4601098-4601117 | None:intergenic | 40.0% | |
| CTAGGTGCTAAAGTTGCAAT+GGG | + | chr4_3:4601170-4601189 | Msa0625510:CDS | 40.0% | |
| !!! | ATTTTTGAGTCACGTTGAGC+TGG | - | chr4_3:4601403-4601422 | None:intergenic | 40.0% |
| AAGAGAGATTCGTTGTGTGG+AGG | + | chr4_3:4597445-4597464 | Msa0625510:CDS | 45.0% | |
| AGAGAGATTCGTTGTGTGGA+GGG | + | chr4_3:4597446-4597465 | Msa0625510:CDS | 45.0% | |
| TGCCAAATCCTGCAAACCTA+AGG | + | chr4_3:4598029-4598048 | Msa0625510:CDS | 45.0% | |
| TAGTGAACAAAGTGTGCCAG+AGG | - | chr4_3:4598275-4598294 | None:intergenic | 45.0% | |
| CTGAGCAGCATTTAGTTGAG+AGG | + | chr4_3:4598465-4598484 | Msa0625510:intron | 45.0% | |
| GTGTAAGGGTTGTGTCCTTT+AGG | + | chr4_3:4598743-4598762 | Msa0625510:intron | 45.0% | |
| !! | TCTCAGCTGTATTTGGTGCA+TGG | + | chr4_3:4598809-4598828 | Msa0625510:intron | 45.0% |
| GCTAACTTGGAAATTGTGGG+AGG | + | chr4_3:4599322-4599341 | Msa0625510:CDS | 45.0% | |
| TTCGCGACTGCTTTCTCATA+TGG | + | chr4_3:4599465-4599484 | Msa0625510:intron | 45.0% | |
| ! | TGACAGGACAAAAAGTGCAG+GGG | - | chr4_3:4599530-4599549 | None:intergenic | 45.0% |
| ! | GTGAACATACTTTGGCTCCA+CGG | + | chr4_3:4599838-4599857 | Msa0625510:CDS | 45.0% |
| !! | CGGGTTGAGTTTTTCAGATC+TGG | + | chr4_3:4599876-4599895 | Msa0625510:CDS | 45.0% |
| ATCTCACAGGCATTTCTACC+AGG | - | chr4_3:4600225-4600244 | None:intergenic | 45.0% | |
| !! | TGCTGGTTTGAATGTGGAGA+TGG | + | chr4_3:4600266-4600285 | Msa0625510:CDS | 45.0% |
| GAATGTGGAGATGGCAAAAC+TGG | + | chr4_3:4600275-4600294 | Msa0625510:CDS | 45.0% | |
| AGGCATCAGCATGGGAAAAT+TGG | - | chr4_3:4600480-4600499 | None:intergenic | 45.0% | |
| !! | AATTACGGGAGTGTTGCTTG+AGG | + | chr4_3:4600510-4600529 | Msa0625510:intron | 45.0% |
| TTCCCAAAGAACACAGTTGC+AGG | - | chr4_3:4600808-4600827 | None:intergenic | 45.0% | |
| GCTACATATCGCAATTAGGC+TGG | - | chr4_3:4600921-4600940 | None:intergenic | 45.0% | |
| AAGCCGGTACCTATACACAA+GGG | - | chr4_3:4600977-4600996 | None:intergenic | 45.0% | |
| GTACTAGATTCCAAGCAAGC+CGG | - | chr4_3:4600993-4601012 | None:intergenic | 45.0% | |
| !! | CCAATAGTGTGCTGCTTGTA+GGG | + | chr4_3:4601114-4601133 | Msa0625510:CDS | 45.0% |
| !! | CAATAGTGTGCTGCTTGTAG+GGG | + | chr4_3:4601115-4601134 | Msa0625510:CDS | 45.0% |
| !! | AATAGTGTGCTGCTTGTAGG+GGG | + | chr4_3:4601116-4601135 | Msa0625510:CDS | 45.0% |
| CCATTGCAACTTTAGCACCT+AGG | - | chr4_3:4601172-4601191 | None:intergenic | 45.0% | |
| CCTAGGTGCTAAAGTTGCAA+TGG | + | chr4_3:4601169-4601188 | Msa0625510:CDS | 45.0% | |
| GAGAGATTCGTTGTGTGGAG+GGG | + | chr4_3:4597447-4597466 | Msa0625510:CDS | 50.0% | |
| GGTAGAATCGGAGACGAAAG+AGG | - | chr4_3:4597627-4597646 | None:intergenic | 50.0% | |
| AACTTGCACAATGTGCTGGG+AGG | + | chr4_3:4598215-4598234 | Msa0625510:intron | 50.0% | |
| TGCAGAGTCAAACCATCCTC+TGG | + | chr4_3:4598256-4598275 | Msa0625510:intron | 50.0% | |
| GAACAAAGTGTGCCAGAGGA+TGG | - | chr4_3:4598271-4598290 | None:intergenic | 50.0% | |
| GTTGAGGCTGTGTGTCTAAG+AGG | + | chr4_3:4598778-4598797 | Msa0625510:intron | 50.0% | |
| !! | GAGAAGTGCCCATGCTTGAT+AGG | + | chr4_3:4598922-4598941 | Msa0625510:intron | 50.0% |
| TCTCCCTGGATGTTGCAGAA+TGG | + | chr4_3:4599098-4599117 | Msa0625510:intron | 50.0% | |
| GGTTGAGCACAATCAACTGC+AGG | + | chr4_3:4599226-4599245 | Msa0625510:CDS | 50.0% | |
| TGAGCACAATCAACTGCAGG+TGG | + | chr4_3:4599229-4599248 | Msa0625510:CDS | 50.0% | |
| CTGCAGGTGGACAAATCTGA+TGG | + | chr4_3:4599242-4599261 | Msa0625510:CDS | 50.0% | |
| TTGGAAATTGTGGGAGGGGA+AGG | + | chr4_3:4599328-4599347 | Msa0625510:CDS | 50.0% | |
| AAAGCAGTCGCGAACACATG+AGG | - | chr4_3:4599459-4599478 | None:intergenic | 50.0% | |
| AGTGCAGGGGAAGAGAAAGA+GGG | - | chr4_3:4599517-4599536 | None:intergenic | 50.0% | |
| AAGTGCAGGGGAAGAGAAAG+AGG | - | chr4_3:4599518-4599537 | None:intergenic | 50.0% | |
| TCTGGCTGGCGAATAAGACA+AGG | + | chr4_3:4599894-4599913 | Msa0625510:CDS | 50.0% | |
| GAAGATACTCTGCTGCAAGC+TGG | + | chr4_3:4600349-4600368 | Msa0625510:CDS | 50.0% | |
| CAAGCCGGTACCTATACACA+AGG | - | chr4_3:4600978-4600997 | None:intergenic | 50.0% | |
| !! | TGTATAGGTACCGGCTTGCT+TGG | + | chr4_3:4600980-4600999 | Msa0625510:intron | 50.0% |
| !! | GCCAATAGTGTGCTGCTTGT+AGG | + | chr4_3:4601113-4601132 | Msa0625510:CDS | 50.0% |
| CCCTACAAGCAGCACACTAT+TGG | - | chr4_3:4601117-4601136 | None:intergenic | 50.0% | |
| GGTGCAATATGTCTGTCACG+TGG | + | chr4_3:4601137-4601156 | Msa0625510:CDS | 50.0% | |
| AGATTCGTTGTGTGGAGGGG+AGG | + | chr4_3:4597450-4597469 | Msa0625510:CDS | 55.0% | |
| GGGCCATTCTGCAACATCCA+GGG | - | chr4_3:4599104-4599123 | None:intergenic | 55.0% | |
| AGAGAAAGAGGGCGGGGATA+TGG | - | chr4_3:4599506-4599525 | None:intergenic | 55.0% | |
| TCACGTGGTCACTCTAGCCT+AGG | + | chr4_3:4601152-4601171 | Msa0625510:CDS | 55.0% | |
| GGGGCCATTCTGCAACATCC+AGG | - | chr4_3:4599105-4599124 | None:intergenic | 60.0% | |
| AGGGGAAGAGAAAGAGGGCG+GGG | - | chr4_3:4599512-4599531 | None:intergenic | 60.0% | |
| CAGGGGAAGAGAAAGAGGGC+GGG | - | chr4_3:4599513-4599532 | None:intergenic | 60.0% | |
| GCAGGGGAAGAGAAAGAGGG+CGG | - | chr4_3:4599514-4599533 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 4597375 | 4601558 | 4597375 | ID=Msa0625510;Name=Msa0625510 |
| chr4_3 | mRNA | 4597375 | 4601558 | 4597375 | ID=Msa0625510-mRNA-1;Parent=Msa0625510;Name=Msa0625510-mRNA-1;_AED=0.06;_eAED=0.06;_QI=5|1|1|1|1|1|6|305|411 |
| chr4_3 | exon | 4597375 | 4597663 | 4597375 | ID=Msa0625510-mRNA-1:exon:1239;Parent=Msa0625510-mRNA-1 |
| chr4_3 | exon | 4597906 | 4598050 | 4597906 | ID=Msa0625510-mRNA-1:exon:1240;Parent=Msa0625510-mRNA-1 |
| chr4_3 | exon | 4599116 | 4599376 | 4599116 | ID=Msa0625510-mRNA-1:exon:1241;Parent=Msa0625510-mRNA-1 |
| chr4_3 | exon | 4599834 | 4599915 | 4599834 | ID=Msa0625510-mRNA-1:exon:1242;Parent=Msa0625510-mRNA-1 |
| chr4_3 | exon | 4600220 | 4600416 | 4600220 | ID=Msa0625510-mRNA-1:exon:1243;Parent=Msa0625510-mRNA-1 |
| chr4_3 | exon | 4600987 | 4601558 | 4600987 | ID=Msa0625510-mRNA-1:exon:1244;Parent=Msa0625510-mRNA-1 |
| chr4_3 | five_prime_UTR | 4597375 | 4597379 | 4597375 | ID=Msa0625510-mRNA-1:five_prime_utr;Parent=Msa0625510-mRNA-1 |
| chr4_3 | CDS | 4597380 | 4597663 | 4597380 | ID=Msa0625510-mRNA-1:cds;Parent=Msa0625510-mRNA-1 |
| chr4_3 | CDS | 4597906 | 4598050 | 4597906 | ID=Msa0625510-mRNA-1:cds;Parent=Msa0625510-mRNA-1 |
| chr4_3 | CDS | 4599116 | 4599376 | 4599116 | ID=Msa0625510-mRNA-1:cds;Parent=Msa0625510-mRNA-1 |
| chr4_3 | CDS | 4599834 | 4599915 | 4599834 | ID=Msa0625510-mRNA-1:cds;Parent=Msa0625510-mRNA-1 |
| chr4_3 | CDS | 4600220 | 4600416 | 4600220 | ID=Msa0625510-mRNA-1:cds;Parent=Msa0625510-mRNA-1 |
| chr4_3 | CDS | 4600987 | 4601253 | 4600987 | ID=Msa0625510-mRNA-1:cds;Parent=Msa0625510-mRNA-1 |
| chr4_3 | three_prime_UTR | 4601254 | 4601558 | 4601254 | ID=Msa0625510-mRNA-1:three_prime_utr;Parent=Msa0625510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
