AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0668160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0668160 MtrunA17_Chr4g0006981 92.405 237 9 1 1 228 77 313 3.74e-159 442
Msa0668160 MtrunA17_Chr4g0047431 47.368 114 53 2 114 227 147 253 1.04e-26 107
Msa0668160 MtrunA17_Chr4g0047431 35.758 165 87 7 64 222 334 485 2.80e-22 94.4
Msa0668160 MtrunA17_Chr4g0047431 40.385 104 59 1 119 222 277 377 3.90e-20 88.2
Msa0668160 MtrunA17_Chr2g0332591 35.417 96 59 1 127 222 55 147 1.83e-18 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0668160 AT2G38270.1 67.521 234 61 2 2 226 65 292 2.01e-117 337
Msa0668160 AT3G54900.1 44.828 116 57 2 111 222 51 163 2.35e-28 105
Msa0668160 AT4G04950.1 41.935 124 56 2 104 227 143 250 9.19e-24 99.0
Msa0668160 AT4G04950.1 41.667 96 53 1 127 222 390 482 4.55e-21 91.3
Msa0668160 AT4G04950.1 40.000 100 57 1 123 222 279 375 1.63e-17 81.3
Msa0668160 AT3G15660.2 38.384 99 58 1 124 222 62 157 2.78e-20 84.7
Msa0668160 AT3G15660.1 38.384 99 58 1 124 222 62 157 2.78e-20 84.7

Find 67 sgRNAs with CRISPR-Local

Find 469 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCACATAACGGCGCACTTC+TGG 0.276069 4_4:+9017235 None:intergenic
TTGGATGAAGATTATAACTA+TGG 0.276665 4_4:-9017149 Msa0668160:CDS
TCTTACCCAAGTGGCGTTTC+CGG 0.280532 4_4:+9017385 None:intergenic
GCGTTTCCGGATTCATTTCC+AGG 0.302092 4_4:+9017398 None:intergenic
CAAGTTGGTAAAAGAGAATA+AGG 0.302408 4_4:-9017279 Msa0668160:CDS
CGAAGATCAGCCTTCTTCTT+AGG 0.340552 4_4:+9017356 None:intergenic
GGATTCTCTCAGAGGGTAAT+AGG 0.345382 4_4:-9017215 Msa0668160:CDS
CCATCCAAGACTTCCATGCT+TGG 0.410922 4_4:+9017453 None:intergenic
TGGGTCAAAGATTCTCTGTC+AGG 0.419390 4_4:+9017473 None:intergenic
AACCATCACCGGCGAGGTAT+TGG 0.424170 4_4:+9022826 None:intergenic
TACTATATAGGTTGGGGTAG+TGG 0.427837 4_4:-9017501 Msa0668160:intron
CATCCAAGACTTCCATGCTT+GGG 0.448569 4_4:+9017454 None:intergenic
TGTCTCGGCACACCGGAAAT+CGG 0.455138 4_4:-9022684 Msa0668160:intron
CGCCAATACCTCGCCGGTGA+TGG 0.455943 4_4:-9022828 Msa0668160:CDS
TGACCCAAGCATGGAAGTCT+TGG 0.456099 4_4:-9017457 Msa0668160:CDS
CTCACCGTTCTTATCATAAA+CGG 0.466803 4_4:+9022745 None:intergenic
GGTAATAGGCATTCTTGAAA+AGG 0.467989 4_4:-9017201 Msa0668160:CDS
GAAGAACTTCCGTCGGGTGC+CGG 0.476879 4_4:-9022776 Msa0668160:CDS
TCAGCCTTCTTCTTAGGCTG+TGG 0.482968 4_4:+9017362 None:intergenic
TTGACCTCCATGTTTGAGAA+AGG 0.485069 4_4:-9017038 Msa0668160:CDS
AAGATTATAACTATGGATTG+AGG 0.490227 4_4:-9017142 Msa0668160:CDS
TTATGAGAGTGTAGATGTAT+TGG 0.491403 4_4:-9017168 Msa0668160:CDS
GTTCCACCTGGAAATGAATC+CGG 0.492241 4_4:-9017404 Msa0668160:CDS
CACTTCACCTTTCTCAAACA+TGG 0.492756 4_4:+9017031 None:intergenic
AACGGTGAGCTTCAGTTCAT+CGG 0.500069 4_4:-9022731 Msa0668160:CDS
TCCAGAAGTGCGCCGTTATG+TGG 0.500421 4_4:-9017236 Msa0668160:CDS
ATCATAAACGGCGTAAACTC+CGG 0.503980 4_4:+9022757 None:intergenic
AGATTATAACTATGGATTGA+GGG 0.506926 4_4:-9017141 Msa0668160:CDS
TTGAATGGTGAACTTGTTGG+TGG 0.513486 4_4:-9017071 Msa0668160:CDS
ATGAATCCGGAAACGCCACT+TGG 0.525120 4_4:-9017391 Msa0668160:CDS
TAATATTGCTGCTACTGTCT+CGG 0.542229 4_4:-9022699 Msa0668160:CDS
ACCCGACGGAAGTTCTTCTC+CGG 0.545914 4_4:+9022781 None:intergenic
TGAAGAGCTCGTGGACAAGT+TGG 0.551751 4_4:-9017294 Msa0668160:CDS
TAAGGTAGTTGCATTCATCA+AGG 0.556799 4_4:-9017261 Msa0668160:CDS
TTTGAGAAAGGTGAAGTGGC+TGG 0.570458 4_4:-9017026 Msa0668160:CDS
CCAAGCATGGAAGTCTTGGA+TGG 0.573626 4_4:-9017453 Msa0668160:CDS
GTTAGTTGCACGTGACGACC+AGG 0.575913 4_4:+9017326 None:intergenic
CTCGCCGGTGATGGTTTCGT+CGG 0.576030 4_4:-9022819 Msa0668160:CDS
AAGACCACAGCCTAAGAAGA+AGG 0.577244 4_4:-9017366 Msa0668160:CDS
ACCGGAGAAGAACTTCCGTC+GGG 0.581537 4_4:-9022782 Msa0668160:CDS
GAGAATCTTTGACCCAAGCA+TGG 0.586957 4_4:-9017466 Msa0668160:CDS
CGTCCCTCTTGAAGAGCTCG+TGG 0.588084 4_4:-9017303 Msa0668160:CDS
CACGAGCTCTTCAAGAGGGA+CGG 0.589016 4_4:+9017304 None:intergenic
AAGAACACATAAAGATCAGT+GGG 0.590962 4_4:-9017430 Msa0668160:CDS
ATCAGTGGGAAAGTTCCACC+TGG 0.600855 4_4:-9017416 Msa0668160:CDS
CGTTATGTGGATTCTCTCAG+AGG 0.601281 4_4:-9017223 Msa0668160:CDS
GAAGAACACATAAAGATCAG+TGG 0.602390 4_4:-9017431 Msa0668160:CDS
TCGGAAAACGATGAAGTCAC+CGG 0.605187 4_4:-9022800 Msa0668160:CDS
ATAGGCATTCTTGAAAAGGA+AGG 0.610176 4_4:-9017197 Msa0668160:CDS
CTCTGAGAGAATCCACATAA+CGG 0.611300 4_4:+9017224 None:intergenic
TTGTCCACGAGCTCTTCAAG+AGG 0.611733 4_4:+9017299 None:intergenic
TGAATCCGGAAACGCCACTT+GGG 0.613599 4_4:-9017390 Msa0668160:CDS
AAGGTAGTTGCATTCATCAA+GGG 0.614128 4_4:-9017260 Msa0668160:CDS
CACCGGAGAAGAACTTCCGT+CGG 0.622393 4_4:-9022783 Msa0668160:CDS
AAACCTCGCCAATACCTCGC+CGG 0.629225 4_4:-9022834 Msa0668160:CDS
CTGCTACTGTCTCGGCACAC+CGG 0.638462 4_4:-9022691 Msa0668160:CDS
GCGTAAACTCCGGCACCCGA+CGG 0.641123 4_4:+9022767 None:intergenic
GCTGATCTTCGATTAACACC+TGG 0.649446 4_4:-9017344 Msa0668160:CDS
TGTCCACGAGCTCTTCAAGA+GGG 0.653430 4_4:+9017300 None:intergenic
TACGCCGTTTATGATAAGAA+CGG 0.658415 4_4:-9022749 Msa0668160:CDS
CATGTTTGAGAAAGGTGAAG+TGG 0.660920 4_4:-9017030 Msa0668160:CDS
GTTATGTGGATTCTCTCAGA+GGG 0.661671 4_4:-9017222 Msa0668160:CDS
TTTCCGGATTCATTTCCAGG+TGG 0.667945 4_4:+9017401 None:intergenic
AGGCTGTGGTCTTACCCAAG+TGG 0.670747 4_4:+9017376 None:intergenic
CGACGAAACCATCACCGGCG+AGG 0.693003 4_4:+9022820 None:intergenic
TTCACCTTTCTCAAACATGG+AGG 0.696862 4_4:+9017034 None:intergenic
TCACCGGCGAGGTATTGGCG+AGG 0.717042 4_4:+9022831 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTATATTTTTTTT+TGG - chr4_4:9019105-9019124 Msa0668160:intron 0.0%
!!! TTTATTTTATATTTTTTTTT+GGG - chr4_4:9019106-9019125 Msa0668160:intron 0.0%
!! TAAAAATAAAAAATAAAATA+TGG + chr4_4:9020029-9020048 None:intergenic 0.0%
!!! AAAAATTTAAAAAATATTTT+TGG - chr4_4:9020170-9020189 Msa0668160:intron 0.0%
!!! TTTTTTTTTTAAAAAAATAT+TGG + chr4_4:9020665-9020684 None:intergenic 0.0%
!! AAAAAAAAAAAAAAATTTAA+CGG + chr4_4:9022236-9022255 None:intergenic 0.0%
!!! ATTTTTGTTTAAATCTTATA+AGG + chr4_4:9017520-9017539 None:intergenic 10.0%
!! ATCTAAAAAAAATAATTACA+GGG + chr4_4:9018964-9018983 None:intergenic 10.0%
!! AATCTAAAAAAAATAATTAC+AGG + chr4_4:9018965-9018984 None:intergenic 10.0%
!! AAAACAAAAAAAATTTATGA+GGG + chr4_4:9018991-9019010 None:intergenic 10.0%
!!! TTATTTCCAAATTTTTTTTT+TGG - chr4_4:9019672-9019691 Msa0668160:intron 10.0%
!!! TATTTCCAAATTTTTTTTTT+GGG - chr4_4:9019673-9019692 Msa0668160:intron 10.0%
!!! AAGAAATTCATATTTTTTTT+CGG + chr4_4:9019915-9019934 None:intergenic 10.0%
!! TTAAAAAAATGAAAAAATTC+TGG + chr4_4:9020001-9020020 None:intergenic 10.0%
!!! AAAACAAAATAATTTTATGA+GGG - chr4_4:9020853-9020872 Msa0668160:intron 10.0%
!!! TCTAAAAAATTTTTTTTACA+TGG - chr4_4:9020881-9020900 Msa0668160:intron 10.0%
!!! CTAAAAAATTTTTTTTACAT+GGG - chr4_4:9020882-9020901 Msa0668160:intron 10.0%
!!! ATATTGAGTTAATTTTGAAT+TGG - chr4_4:9017591-9017610 Msa0668160:intron 15.0%
!!! AATAACATTTTTAAGATTTC+CGG + chr4_4:9018584-9018603 None:intergenic 15.0%
!!! TTAAAAATGTTATTTCAAAC+AGG - chr4_4:9018590-9018609 Msa0668160:intron 15.0%
!! TGTTTGATTGTTTATAAAAT+AGG - chr4_4:9018670-9018689 Msa0668160:intron 15.0%
!! GTTTGATTGTTTATAAAATA+GGG - chr4_4:9018671-9018690 Msa0668160:intron 15.0%
!!! GTGATACTTTATTTAATATA+GGG - chr4_4:9018890-9018909 Msa0668160:intron 15.0%
!! TCTAAAAAAAATAATTACAG+GGG + chr4_4:9018963-9018982 None:intergenic 15.0%
!! CAAAACAAAAAAAATTTATG+AGG + chr4_4:9018992-9019011 None:intergenic 15.0%
!!! CTCATAAATTTTTTTTGTTT+TGG - chr4_4:9018990-9019009 Msa0668160:intron 15.0%
!!! AATTTTTTTTGTTTTGGTTT+TGG - chr4_4:9018996-9019015 Msa0668160:intron 15.0%
!! CTGAAAATATTAAAAAATTC+TGG - chr4_4:9019208-9019227 Msa0668160:intron 15.0%
!! TCTGAAAAAAATTAAAATTC+TGG - chr4_4:9019413-9019432 Msa0668160:intron 15.0%
!!! CGAAATTTTAATTAAAATTC+TGG - chr4_4:9019450-9019469 Msa0668160:intron 15.0%
!! TAAAAATTGTGAAAAAATTC+TGG - chr4_4:9019503-9019522 Msa0668160:intron 15.0%
!! AAATTCCCAAAAAAAAAATT+TGG + chr4_4:9019681-9019700 None:intergenic 15.0%
!! TAAAAATGAAAACAAAAATC+TGG + chr4_4:9020059-9020078 None:intergenic 15.0%
!! GAAATCAAAAAATAAGTTAA+GGG - chr4_4:9020470-9020489 Msa0668160:intron 15.0%
!! GAAACAAAAAAATAAGTTAA+GGG - chr4_4:9020501-9020520 Msa0668160:intron 15.0%
!!! AAATTATTTTGTTTTGGTTT+TGG + chr4_4:9020848-9020867 None:intergenic 15.0%
!!! CTCATAAAATTATTTTGTTT+TGG + chr4_4:9020854-9020873 None:intergenic 15.0%
!!! CAAAACAAAATAATTTTATG+AGG - chr4_4:9020852-9020871 Msa0668160:intron 15.0%
!! AAGTCTCTTAATATATTAAA+GGG + chr4_4:9020955-9020974 None:intergenic 15.0%
!!! TAATTGTTTAGAACAATTTG+TGG - chr4_4:9017417-9017436 Msa0668160:CDS 20.0%
!! ATTTGTGTATTTCAAAATTC+AGG + chr4_4:9017641-9017660 None:intergenic 20.0%
!!! TTTGTAAATTTTATTGCAGT+AGG - chr4_4:9017660-9017679 Msa0668160:intron 20.0%
!! TAAAATCACATCCTTAATTT+CGG - chr4_4:9017754-9017773 Msa0668160:intron 20.0%
!! AAAGCTTCAAAACAATTATA+GGG + chr4_4:9017930-9017949 None:intergenic 20.0%
!!! TATAATTGTTTTGAAGCTTT+GGG - chr4_4:9017930-9017949 Msa0668160:intron 20.0%
!!! GTCATTTTTCGAATTATAAT+CGG + chr4_4:9018105-9018124 None:intergenic 20.0%
!! AATTCAATGTAATAATGTGT+CGG - chr4_4:9018127-9018146 Msa0668160:intron 20.0%
!! TCTGCTTATTATAAGAAAAT+GGG - chr4_4:9018250-9018269 Msa0668160:intron 20.0%
!!! TTCTTTTATAGTCTTTCATA+AGG - chr4_4:9018460-9018479 Msa0668160:intron 20.0%
!!! GGTGATACTTTATTTAATAT+AGG - chr4_4:9018889-9018908 Msa0668160:intron 20.0%
!! TATTTATAAACCGAGAATAA+GGG - chr4_4:9019706-9019725 Msa0668160:intron 20.0%
!!! TTTTCATTAGTATTTTTTCC+AGG - chr4_4:9019791-9019810 Msa0668160:intron 20.0%
!!! ATGAATTTTTTTCCGTTATA+CGG - chr4_4:9019871-9019890 Msa0668160:intron 20.0%
!!! TTCCAAATTTTTTTCAATAC+CGG + chr4_4:9019947-9019966 None:intergenic 20.0%
!!! TTTTGGCTTAATTAATGATT+TGG - chr4_4:9020187-9020206 Msa0668160:intron 20.0%
!! TTGTAACGTTAATAACTTAT+GGG + chr4_4:9020590-9020609 None:intergenic 20.0%
!! ATTGTAACGTTAATAACTTA+TGG + chr4_4:9020589-9020608 None:intergenic 20.0%
!! AAGTTATTAACGTTACAATT+TGG - chr4_4:9020247-9020266 Msa0668160:intron 20.0%
!!! ACGAAACTTTTAATAGTTAA+GGG + chr4_4:9020530-9020549 None:intergenic 20.0%
!!! AACGAAACTTTTAATAGTTA+AGG + chr4_4:9020529-9020548 None:intergenic 20.0%
!!! AACTATTAAAAGTTTCGTTT+TGG - chr4_4:9020307-9020326 Msa0668160:intron 20.0%
!! GAAACCAAAAATTAAGTTAA+GGG + chr4_4:9020334-9020353 None:intergenic 20.0%
!! GAAACCTAAAAATAAGTTAA+GGG - chr4_4:9020439-9020458 Msa0668160:intron 20.0%
!!! CTTATTTTTTGATTTCGTTT+TGG + chr4_4:9020466-9020485 None:intergenic 20.0%
!! CGAAATCAAAAAATAAGTTA+AGG - chr4_4:9020469-9020488 Msa0668160:intron 20.0%
!!! CTTATTTTTTTGTTTCGTTT+TGG + chr4_4:9020497-9020516 None:intergenic 20.0%
!! CGAAACAAAAAAATAAGTTA+AGG - chr4_4:9020500-9020519 Msa0668160:intron 20.0%
!!! AACTATTAAAAGTTTCGTTT+TGG + chr4_4:9020307-9020326 None:intergenic 20.0%
!!! AACGAAACTTTTAATAGTTA+AGG - chr4_4:9020529-9020548 Msa0668160:intron 20.0%
!!! ACGAAACTTTTAATAGTTAA+GGG - chr4_4:9020530-9020549 Msa0668160:intron 20.0%
!! AAGTTATTAACGTTACAATT+TGG + chr4_4:9020247-9020266 None:intergenic 20.0%
!! ATTGTAACGTTAATAACTTA+TGG - chr4_4:9020589-9020608 Msa0668160:intron 20.0%
!! TTGTAACGTTAATAACTTAT+GGG - chr4_4:9020590-9020609 Msa0668160:intron 20.0%
!! GAAGTCTCTTAATATATTAA+AGG + chr4_4:9020956-9020975 None:intergenic 20.0%
!!! AAATACCTTTGAAAAGATAA+AGG + chr4_4:9021184-9021203 None:intergenic 20.0%
!! TGTAATATACAAACAGTATT+TGG - chr4_4:9022198-9022217 Msa0668160:intron 20.0%
!! GAATAATAGTCTTAAAGAGT+TGG - chr4_4:9017684-9017703 Msa0668160:intron 25.0%
! TTGGTTACTCAATTGTAAAT+TGG - chr4_4:9017703-9017722 Msa0668160:intron 25.0%
! AATTTGATCCAATTTCATTG+TGG - chr4_4:9017804-9017823 Msa0668160:intron 25.0%
! ATTTGATCCAATTTCATTGT+GGG - chr4_4:9017805-9017824 Msa0668160:intron 25.0%
! AAGCTTCAAAACAATTATAG+GGG + chr4_4:9017929-9017948 None:intergenic 25.0%
! CAAAGCTTCAAAACAATTAT+AGG + chr4_4:9017931-9017950 None:intergenic 25.0%
!!! CTATAATTGTTTTGAAGCTT+TGG - chr4_4:9017929-9017948 Msa0668160:intron 25.0%
!! TTTGAAGCATATATATTCCT+CGG + chr4_4:9018204-9018223 None:intergenic 25.0%
! GAATATATATGCTTCAAAGA+TGG - chr4_4:9018206-9018225 Msa0668160:intron 25.0%
!! CATTTTCTTATAATAAGCAG+AGG + chr4_4:9018251-9018270 None:intergenic 25.0%
! CTCTGCTTATTATAAGAAAA+TGG - chr4_4:9018249-9018268 Msa0668160:intron 25.0%
! CTGCTTATTATAAGAAAATG+GGG - chr4_4:9018251-9018270 Msa0668160:intron 25.0%
!!! AAGTTCATTTTTTACGATGA+AGG - chr4_4:9018282-9018301 Msa0668160:intron 25.0%
! TAATGGAAAGGATACTTATT+AGG - chr4_4:9018431-9018450 Msa0668160:intron 25.0%
! TTATAGTCTTTCATAAGGAA+AGG - chr4_4:9018465-9018484 Msa0668160:intron 25.0%
! TCATAAGGAAAGGAAATAAT+TGG - chr4_4:9018475-9018494 Msa0668160:intron 25.0%
! TGTTACAATGTTATTCTTGA+TGG - chr4_4:9018552-9018571 Msa0668160:intron 25.0%
!! AAAAGACAAATGCCAAATTT+TGG - chr4_4:9018696-9018715 Msa0668160:intron 25.0%
! TATGAGTTAGAACCAAAATT+TGG + chr4_4:9018711-9018730 None:intergenic 25.0%
!! ATATGATGATAGTTTGAAGT+TGG - chr4_4:9018732-9018751 Msa0668160:intron 25.0%
!!! TTGAAGTTGGTAAGAAATAT+TGG - chr4_4:9018745-9018764 Msa0668160:intron 25.0%
!!! TAAGAAATATTGGTTCAGTT+TGG - chr4_4:9018755-9018774 Msa0668160:intron 25.0%
! ACAAAAAAAATTTATGAGGG+TGG + chr4_4:9018988-9019007 None:intergenic 25.0%
! TATATATATATGTCGAGCTT+AGG - chr4_4:9019635-9019654 Msa0668160:intron 25.0%
! GTATTTATAAACCGAGAATA+AGG - chr4_4:9019705-9019724 Msa0668160:intron 25.0%
!!! CATATTTTTTCCCTTATTCT+CGG + chr4_4:9019719-9019738 None:intergenic 25.0%
!!! TGAATTTCTTTCATTTTTCC+CGG - chr4_4:9019925-9019944 Msa0668160:intron 25.0%
!!! TCCAAATTTTTTTCAATACC+GGG + chr4_4:9019946-9019965 None:intergenic 25.0%
! GTAACCAACAAATAACTTAA+GGG + chr4_4:9020621-9020640 None:intergenic 25.0%
! TGTAACCAACAAATAACTTA+AGG + chr4_4:9020620-9020639 None:intergenic 25.0%
!!! GTTATTTGTTGGTTACATTT+TGG - chr4_4:9020218-9020237 Msa0668160:intron 25.0%
! GAAACCAAAAAGTAACTTAA+GGG + chr4_4:9020561-9020580 None:intergenic 25.0%
! CGAAACCAAAAATTAAGTTA+AGG + chr4_4:9020335-9020354 None:intergenic 25.0%
!!! CTTAATTTTTGGTTTCGTTT+TGG - chr4_4:9020338-9020357 Msa0668160:intron 25.0%
!!! CTTATTTTTAGGTTTCGTTT+TGG + chr4_4:9020435-9020454 None:intergenic 25.0%
! CGAAACCTAAAAATAAGTTA+AGG - chr4_4:9020438-9020457 Msa0668160:intron 25.0%
! GAAACCAAAAAGTAACTTAA+GGG - chr4_4:9020561-9020580 Msa0668160:intron 25.0%
!!! GTTATTTGTTGGTTACATTT+TGG + chr4_4:9020218-9020237 None:intergenic 25.0%
! TGTAACCAACAAATAACTTA+AGG - chr4_4:9020620-9020639 Msa0668160:intron 25.0%
! GTAACCAACAAATAACTTAA+GGG - chr4_4:9020621-9020640 Msa0668160:intron 25.0%
!!! TATTGGCTTAATTACTCTTT+TGG + chr4_4:9020648-9020667 None:intergenic 25.0%
!! ACAAAATAATTTTATGAGGG+TGG - chr4_4:9020856-9020875 Msa0668160:intron 25.0%
!!! TTTTTAGCCCATGTAATATA+GGG + chr4_4:9020923-9020942 None:intergenic 25.0%
! TTCATGATTAACATTGGATA+GGG - chr4_4:9020973-9020992 Msa0668160:intron 25.0%
!! GTGAAAAGTTTGCTTTAATT+TGG - chr4_4:9021225-9021244 Msa0668160:intron 25.0%
! ACTTCTTAAACACAATAAGT+GGG - chr4_4:9021846-9021865 Msa0668160:intron 25.0%
! AAATCTCCAAAAGAAATTGT+GGG + chr4_4:9021930-9021949 None:intergenic 25.0%
! AAAATCTCCAAAAGAAATTG+TGG + chr4_4:9021931-9021950 None:intergenic 25.0%
! AATTGAAAAGTCTCAAATCA+TGG + chr4_4:9022089-9022108 None:intergenic 25.0%
! AAATGCAGAAAAAGACATAT+GGG + chr4_4:9022153-9022172 None:intergenic 25.0%
! AAAATGCAGAAAAAGACATA+TGG + chr4_4:9022154-9022173 None:intergenic 25.0%
! TGTTTGTATATTACATCTGT+AGG + chr4_4:9022193-9022212 None:intergenic 25.0%
! ATCATCAGGAAAGTAATATT+TGG + chr4_4:9022311-9022330 None:intergenic 25.0%
! ACAATGAAAAATTCATCATC+AGG + chr4_4:9022325-9022344 None:intergenic 25.0%
! TGTGAAATTGTCTACTATAT+AGG - chr4_4:9022342-9022361 Msa0668160:intron 25.0%
! AAATTGTCTACTATATAGGT+TGG - chr4_4:9022346-9022365 Msa0668160:intron 25.0%
! AATTGTCTACTATATAGGTT+GGG - chr4_4:9022347-9022366 Msa0668160:intron 25.0%
! TTGGATGAAGATTATAACTA+TGG - chr4_4:9022706-9022725 Msa0668160:CDS 25.0%
!! AAGATTATAACTATGGATTG+AGG - chr4_4:9022713-9022732 Msa0668160:CDS 25.0%
!! AGATTATAACTATGGATTGA+GGG - chr4_4:9022714-9022733 Msa0668160:CDS 25.0%
!! CACTTAAAAAGTATAGCAAT+TGG - chr4_4:9022740-9022759 Msa0668160:CDS 25.0%
AACTGAGAATCTTACCTTAA+CGG + chr4_4:9017315-9017334 None:intergenic 30.0%
AGTAATAGTAACTAAGTTCG+TGG + chr4_4:9017880-9017899 None:intergenic 30.0%
!! AAGCTTTGGGATATAATTGA+GGG - chr4_4:9017943-9017962 Msa0668160:intron 30.0%
CCATCAACATTTATTCTAAG+AGG + chr4_4:9018030-9018049 None:intergenic 30.0%
CCTCTTAGAATAAATGTTGA+TGG - chr4_4:9018027-9018046 Msa0668160:intron 30.0%
ACACAATACATATTCAACAC+CGG - chr4_4:9018167-9018186 Msa0668160:intron 30.0%
! ATATATATTCCTCGGATTAG+GGG + chr4_4:9018196-9018215 None:intergenic 30.0%
CATATATATTCCTCGGATTA+GGG + chr4_4:9018197-9018216 None:intergenic 30.0%
ATATATGCTTCAAAGATGGA+AGG - chr4_4:9018210-9018229 Msa0668160:intron 30.0%
GATGGAAGGAAAAGAAAAAA+TGG - chr4_4:9018224-9018243 Msa0668160:intron 30.0%
TTATGATTCCCAGTGTAATT+AGG - chr4_4:9018317-9018336 Msa0668160:intron 30.0%
TTTCTTAGCCTAATTACACT+GGG + chr4_4:9018328-9018347 None:intergenic 30.0%
!! AGGCTAAGAAAGAGTATTTA+AGG - chr4_4:9018337-9018356 Msa0668160:intron 30.0%
! TTATTCTTGATGGATGAAAC+CGG - chr4_4:9018562-9018581 Msa0668160:intron 30.0%
CAGGAATAGTAATTGAAACA+TGG - chr4_4:9018609-9018628 Msa0668160:intron 30.0%
AAGGTCTATATCATCATTAC+CGG - chr4_4:9018789-9018808 Msa0668160:intron 30.0%
GTTCGAGAGAAATTTAAGAA+AGG - chr4_4:9018816-9018835 Msa0668160:intron 30.0%
TTAAGAAAGGTCATAAGAGA+TGG - chr4_4:9018829-9018848 Msa0668160:intron 30.0%
! ATGGAAGAGATTCTAACTTT+TGG - chr4_4:9018848-9018867 Msa0668160:intron 30.0%
! AAGAGATTCTAACTTTTGGA+CGG - chr4_4:9018852-9018871 Msa0668160:intron 30.0%
TGTATTTATAAACCGAGCTT+AGG - chr4_4:9019739-9019758 Msa0668160:intron 30.0%
ATACACAAAAAACCTAAGCT+CGG + chr4_4:9019754-9019773 None:intergenic 30.0%
! TCCCGGTATTGAAAAAAATT+TGG - chr4_4:9019942-9019961 Msa0668160:intron 30.0%
CGAAACCAAAAAGTAACTTA+AGG + chr4_4:9020560-9020579 None:intergenic 30.0%
!!! GTTACTTTTTGGTTTCGTTT+TGG - chr4_4:9020278-9020297 Msa0668160:intron 30.0%
! TGGTCCCTTAACTTAATTTT+TGG - chr4_4:9020327-9020346 Msa0668160:intron 30.0%
GATGAATGTATTAGCGTTAA+GGG - chr4_4:9020408-9020427 Msa0668160:intron 30.0%
!! TGGTCCCTTAACTTATTTTT+AGG + chr4_4:9020446-9020465 None:intergenic 30.0%
!!! GTTACTTTTTGGTTTCGTTT+TGG + chr4_4:9020278-9020297 None:intergenic 30.0%
CGAAACCAAAAAGTAACTTA+AGG - chr4_4:9020560-9020579 Msa0668160:intron 30.0%
!! ATGTAATATAGGGCACTTTT+GGG + chr4_4:9020913-9020932 None:intergenic 30.0%
!! AAAAGTGCCCTATATTACAT+GGG - chr4_4:9020913-9020932 Msa0668160:intron 30.0%
!!! GTTTTTAGCCCATGTAATAT+AGG + chr4_4:9020924-9020943 None:intergenic 30.0%
AGAGACTTCATGATTAACAT+TGG - chr4_4:9020967-9020986 Msa0668160:intron 30.0%
CTTCATGATTAACATTGGAT+AGG - chr4_4:9020972-9020991 Msa0668160:intron 30.0%
TCATGATTAACATTGGATAG+GGG - chr4_4:9020974-9020993 Msa0668160:intron 30.0%
!!! CTTTTCAAAGGTATTTTGAG+TGG - chr4_4:9021188-9021207 Msa0668160:intron 30.0%
!! TTTAGGCATGAAGGTTTTAA+TGG - chr4_4:9021293-9021312 Msa0668160:intron 30.0%
!! TTAGGCATGAAGGTTTTAAT+GGG - chr4_4:9021294-9021313 Msa0668160:intron 30.0%
TGTGTTTAAGAAGTCTCATA+TGG + chr4_4:9021840-9021859 None:intergenic 30.0%
GACTTCTTAAACACAATAAG+TGG - chr4_4:9021845-9021864 Msa0668160:intron 30.0%
! ATATTTGGAGATTTAGAGCA+TGG + chr4_4:9022296-9022315 None:intergenic 30.0%
ATTGTCTACTATATAGGTTG+GGG - chr4_4:9022348-9022367 Msa0668160:intron 30.0%
AAGAACACATAAAGATCAGT+GGG - chr4_4:9022425-9022444 Msa0668160:intron 30.0%
!! CAAGTTGGTAAAAGAGAATA+AGG - chr4_4:9022576-9022595 Msa0668160:intron 30.0%
! TTATGAGAGTGTAGATGTAT+TGG - chr4_4:9022687-9022706 Msa0668160:CDS 30.0%
AAAAATATCTGAGGGAATGT+AGG + chr4_4:9022766-9022785 None:intergenic 30.0%
!! TTCCCTCAGATATTTTTGAA+TGG - chr4_4:9022769-9022788 Msa0668160:CDS 30.0%
CACCATTCAAAAATATCTGA+GGG + chr4_4:9022774-9022793 None:intergenic 30.0%
TCACCATTCAAAAATATCTG+AGG + chr4_4:9022775-9022794 None:intergenic 30.0%
! TTTTTGAATGGTGAACTTGT+TGG - chr4_4:9022781-9022800 Msa0668160:CDS 30.0%
TACGCCGTTTATGATAAGAA+CGG - chr4_4:9017106-9017125 Msa0668160:CDS 35.0%
CTCACCGTTCTTATCATAAA+CGG + chr4_4:9017113-9017132 None:intergenic 35.0%
TAATATTGCTGCTACTGTCT+CGG - chr4_4:9017156-9017175 Msa0668160:CDS 35.0%
ACATCCTTAATTTCGGAGTT+TGG - chr4_4:9017761-9017780 Msa0668160:intron 35.0%
ATGACCAAACTCCGAAATTA+AGG + chr4_4:9017768-9017787 None:intergenic 35.0%
GTAACTAAGTTCGTGGAAAT+GGG + chr4_4:9017873-9017892 None:intergenic 35.0%
AGTAACTAAGTTCGTGGAAA+TGG + chr4_4:9017874-9017893 None:intergenic 35.0%
!! GAAGCTTTGGGATATAATTG+AGG - chr4_4:9017942-9017961 Msa0668160:intron 35.0%
!! AGCTTTGGGATATAATTGAG+GGG - chr4_4:9017944-9017963 Msa0668160:intron 35.0%
ACTCTCTCAAGGTTAAAGAA+AGG - chr4_4:9017971-9017990 Msa0668160:intron 35.0%
CTCTCTCAAGGTTAAAGAAA+GGG - chr4_4:9017972-9017991 Msa0668160:intron 35.0%
TATGAAGCACAAACTCAGAT+AGG - chr4_4:9018056-9018075 Msa0668160:intron 35.0%
GCATATATATTCCTCGGATT+AGG + chr4_4:9018198-9018217 None:intergenic 35.0%
CTTTCTTAGCCTAATTACAC+TGG + chr4_4:9018329-9018348 None:intergenic 35.0%
!! GAGTATTTAAGGCGCTTTTT+AGG - chr4_4:9018348-9018367 Msa0668160:intron 35.0%
!! TAAGGCGCTTTTTAGGAATA+AGG - chr4_4:9018355-9018374 Msa0668160:intron 35.0%
!! AAGGCGCTTTTTAGGAATAA+GGG - chr4_4:9018356-9018375 Msa0668160:intron 35.0%
TCTTCCTTTACTTCTCTACA+AGG - chr4_4:9018407-9018426 Msa0668160:intron 35.0%
CTTCCTTTACTTCTCTACAA+GGG - chr4_4:9018408-9018427 Msa0668160:intron 35.0%
TTACCCTTGTAGAGAAGTAA+AGG + chr4_4:9018414-9018433 None:intergenic 35.0%
TTACTTCTCTACAAGGGTAA+TGG - chr4_4:9018414-9018433 Msa0668160:intron 35.0%
AAGGAAAGGAAATAATTGGC+AGG - chr4_4:9018479-9018498 Msa0668160:intron 35.0%
! AATAATTGGCAGGTGGTTTT+AGG - chr4_4:9018489-9018508 Msa0668160:intron 35.0%
! GAAACATGGTTTCAAGTACT+AGG - chr4_4:9018623-9018642 Msa0668160:intron 35.0%
TTCAAGTACTAGGAAACAGA+AGG - chr4_4:9018633-9018652 Msa0668160:intron 35.0%
!! GAAATATTGGTTCAGTTTGG+TGG - chr4_4:9018758-9018777 Msa0668160:intron 35.0%
AGGTCTATATCATCATTACC+GGG - chr4_4:9018790-9018809 Msa0668160:intron 35.0%
AAAAGTGGCCTATATTACAG+GGG + chr4_4:9018932-9018951 None:intergenic 35.0%
CAAAAGTGGCCTATATTACA+GGG + chr4_4:9018933-9018952 None:intergenic 35.0%
!!! CTGTAATATAGGCCACTTTT+GGG - chr4_4:9018932-9018951 Msa0668160:intron 35.0%
!!! ATTTTTTTTTGGGGTACACG+TGG - chr4_4:9019116-9019135 Msa0668160:intron 35.0%
TCGGAATACACAAAAATTCC+TGG + chr4_4:9019812-9019831 None:intergenic 35.0%
! TTTTTGTGTATTCCGAGCTT+AGG - chr4_4:9019816-9019835 Msa0668160:intron 35.0%
CTTGTCATTCAACCGTATAA+CGG + chr4_4:9019886-9019905 None:intergenic 35.0%
TGGTCCCTTAAGTTATTTGT+TGG - chr4_4:9020207-9020226 Msa0668160:intron 35.0%
!!! TGGTCCCTTAAGTTACTTTT+TGG - chr4_4:9020267-9020286 Msa0668160:intron 35.0%
ACATTCATCCTATCGTAAAG+AGG + chr4_4:9020397-9020416 None:intergenic 35.0%
GGATGAATGTATTAGCGTTA+AGG - chr4_4:9020407-9020426 Msa0668160:intron 35.0%
!!! TGGTCCCTTAAGTTACTTTT+TGG + chr4_4:9020267-9020286 None:intergenic 35.0%
TGGTCCCTTAAGTTATTTGT+TGG + chr4_4:9020207-9020226 None:intergenic 35.0%
AAAAAATCAGAAATGCCACG+TGG - chr4_4:9020720-9020739 Msa0668160:intron 35.0%
ATAGATTCTGTTGAGTCACA+GGG - chr4_4:9020814-9020833 Msa0668160:intron 35.0%
!! CATGTAATATAGGGCACTTT+TGG + chr4_4:9020914-9020933 None:intergenic 35.0%
!! CAAAAGTGCCCTATATTACA+TGG - chr4_4:9020912-9020931 Msa0668160:intron 35.0%
CATGATTAACATTGGATAGG+GGG - chr4_4:9020975-9020994 Msa0668160:intron 35.0%
ATGATTAACATTGGATAGGG+GGG - chr4_4:9020976-9020995 Msa0668160:intron 35.0%
!! AGAATGGAATGGATTAAGAG+TGG - chr4_4:9021027-9021046 Msa0668160:intron 35.0%
! ATGGATTAAGAGTGGTGAAT+TGG - chr4_4:9021035-9021054 Msa0668160:intron 35.0%
TAAGAGTGGTGAATTGGAAT+TGG - chr4_4:9021041-9021060 Msa0668160:intron 35.0%
ATTTCATTGGGAAGAAGAGT+TGG - chr4_4:9021078-9021097 Msa0668160:intron 35.0%
! GAGCACCTTTATCTTTTCAA+AGG - chr4_4:9021176-9021195 Msa0668160:intron 35.0%
!!! TTCAAAGGTATTTTGAGTGG+AGG - chr4_4:9021191-9021210 Msa0668160:intron 35.0%
TTTCCAATGTCACGACTATT+TGG - chr4_4:9021249-9021268 Msa0668160:intron 35.0%
ATTCCAAATAGTCGTGACAT+TGG + chr4_4:9021255-9021274 None:intergenic 35.0%
! TCACGACTATTTGGAATACT+AGG - chr4_4:9021258-9021277 Msa0668160:intron 35.0%
!! TAGGCATGAAGGTTTTAATG+GGG - chr4_4:9021295-9021314 Msa0668160:intron 35.0%
ATTCTCAAGAGCAAGCTTAA+AGG - chr4_4:9021344-9021363 Msa0668160:intron 35.0%
TTAAACTCTGTGGCTTGATT+TGG - chr4_4:9021395-9021414 Msa0668160:intron 35.0%
! TTAATTCTTGCTGCCTTGTT+TGG - chr4_4:9021546-9021565 Msa0668160:intron 35.0%
GACTGAAAAACAACCAAACA+AGG + chr4_4:9021562-9021581 None:intergenic 35.0%
!! TGCTGTGATTGATTTTTCTG+TGG - chr4_4:9021785-9021804 Msa0668160:intron 35.0%
!! TGATTGATTTTTCTGTGGAG+TGG - chr4_4:9021790-9021809 Msa0668160:intron 35.0%
TCTTTCAACACTATTTCGCT+GGG + chr4_4:9021893-9021912 None:intergenic 35.0%
! AGCGAAATAGTGTTGAAAGA+GGG - chr4_4:9021893-9021912 Msa0668160:intron 35.0%
! CTGTAACCCACAATTTCTTT+TGG - chr4_4:9021921-9021940 Msa0668160:intron 35.0%
TTTAGCCCAAACCATTGTTT+GGG + chr4_4:9022039-9022058 None:intergenic 35.0%
GAAGAACACATAAAGATCAG+TGG - chr4_4:9022424-9022443 Msa0668160:intron 35.0%
TAAGGTAGTTGCATTCATCA+AGG - chr4_4:9022594-9022613 Msa0668160:intron 35.0%
AAGGTAGTTGCATTCATCAA+GGG - chr4_4:9022595-9022614 Msa0668160:intron 35.0%
GGTAATAGGCATTCTTGAAA+AGG - chr4_4:9022654-9022673 Msa0668160:intron 35.0%
ATAGGCATTCTTGAAAAGGA+AGG - chr4_4:9022658-9022677 Msa0668160:intron 35.0%
ATCATAAACGGCGTAAACTC+CGG + chr4_4:9017101-9017120 None:intergenic 40.0%
TGTGGCATTAATGTAGCTTG+AGG - chr4_4:9017435-9017454 Msa0668160:CDS 40.0%
ATTTCGGAGTTTGGTCATGA+TGG - chr4_4:9017770-9017789 Msa0668160:intron 40.0%
AGTTGCTCCCACAATGAAAT+TGG + chr4_4:9017815-9017834 None:intergenic 40.0%
AGAAAGGGTGATTCTTGCAT+AGG - chr4_4:9017987-9018006 Msa0668160:intron 40.0%
!! TCTCTACAAGGGTAATGGAA+AGG - chr4_4:9018419-9018438 Msa0668160:intron 40.0%
GAAAGGAAATAATTGGCAGG+TGG - chr4_4:9018482-9018501 Msa0668160:intron 40.0%
!! ATATTGGTTCAGTTTGGTGG+AGG - chr4_4:9018761-9018780 Msa0668160:intron 40.0%
!! TATTGGTTCAGTTTGGTGGA+GGG - chr4_4:9018762-9018781 Msa0668160:intron 40.0%
GGTCTATATCATCATTACCG+GGG - chr4_4:9018791-9018810 Msa0668160:intron 40.0%
! TAACTTTTGGACGGATCTGT+TGG - chr4_4:9018861-9018880 Msa0668160:intron 40.0%
! GCTTTTAGCCCCTGTAATAT+AGG - chr4_4:9018921-9018940 Msa0668160:intron 40.0%
CCAAAAGTGGCCTATATTAC+AGG + chr4_4:9018934-9018953 None:intergenic 40.0%
!! CCTGTAATATAGGCCACTTT+TGG - chr4_4:9018931-9018950 Msa0668160:intron 40.0%
!! AAAGATTCTGCTGACTCAAG+GGG + chr4_4:9019030-9019049 None:intergenic 40.0%
!! CAAAGATTCTGCTGACTCAA+GGG + chr4_4:9019031-9019050 None:intergenic 40.0%
!! TCAAAGATTCTGCTGACTCA+AGG + chr4_4:9019032-9019051 None:intergenic 40.0%
CTTGTCATTCAACCTAAGCT+CGG + chr4_4:9019831-9019850 None:intergenic 40.0%
TATCGTAAAGAGGACCAAAG+TGG + chr4_4:9020387-9020406 None:intergenic 40.0%
ACTTTGGTCCTCTTTACGAT+AGG - chr4_4:9020386-9020405 Msa0668160:intron 40.0%
TGTGTAAATGAATGTCCACG+TGG + chr4_4:9020738-9020757 None:intergenic 40.0%
TGGACATTCATTTACACACG+TGG - chr4_4:9020740-9020759 Msa0668160:intron 40.0%
ACTCAACAGAATCTATGAGG+TGG + chr4_4:9020810-9020829 None:intergenic 40.0%
GTGACTCAACAGAATCTATG+AGG + chr4_4:9020813-9020832 None:intergenic 40.0%
CATAGATTCTGTTGAGTCAC+AGG - chr4_4:9020813-9020832 Msa0668160:intron 40.0%
TAGATTCTGTTGAGTCACAG+GGG - chr4_4:9020815-9020834 Msa0668160:intron 40.0%
!! AGTTGGTGGAGGTATTTCAA+GGG - chr4_4:9021095-9021114 Msa0668160:intron 40.0%
!! TATTTCAAGGGCTAGCTGTA+GGG - chr4_4:9021107-9021126 Msa0668160:intron 40.0%
! CAAACTTTTCACGAACCTTC+CGG + chr4_4:9021217-9021236 None:intergenic 40.0%
TTGGAATACTAGGAATGCCA+CGG - chr4_4:9021268-9021287 Msa0668160:intron 40.0%
!! TGAAGGTTTTAATGGGGAGA+AGG - chr4_4:9021301-9021320 Msa0668160:intron 40.0%
!!! AGAAGGCGGAAATTTTAGCT+TGG - chr4_4:9021318-9021337 Msa0668160:intron 40.0%
!! TTAGCTTTTCGCTTAACCAG+TGG - chr4_4:9021369-9021388 Msa0668160:intron 40.0%
! GTGCAATTCTGTTTTGCAGT+CGG - chr4_4:9021637-9021656 Msa0668160:intron 40.0%
GTCGAATGTTTCTTGTGTAG+CGG - chr4_4:9021721-9021740 Msa0668160:intron 40.0%
TCAGCACAAAACTCTCAATC+AGG + chr4_4:9021762-9021781 None:intergenic 40.0%
!! TGTGGAGTGGCTTTTTAGTA+TGG - chr4_4:9021803-9021822 Msa0668160:intron 40.0%
CTCTTTCAACACTATTTCGC+TGG + chr4_4:9021894-9021913 None:intergenic 40.0%
! CAGCGAAATAGTGTTGAAAG+AGG - chr4_4:9021892-9021911 Msa0668160:intron 40.0%
!! ACCATGTTTGGTTCTCTGTT+TGG - chr4_4:9022013-9022032 Msa0668160:intron 40.0%
TTTGGCCCAAACAATGGTTT+GGG - chr4_4:9022031-9022050 Msa0668160:intron 40.0%
CTTTAGCCCAAACCATTGTT+TGG + chr4_4:9022040-9022059 None:intergenic 40.0%
! TACTATATAGGTTGGGGTAG+TGG - chr4_4:9022354-9022373 Msa0668160:intron 40.0%
! CTCTGAGAGAATCCACATAA+CGG + chr4_4:9022634-9022653 None:intergenic 40.0%
GTTATGTGGATTCTCTCAGA+GGG - chr4_4:9022633-9022652 Msa0668160:intron 40.0%
!! TTGAATGGTGAACTTGTTGG+TGG - chr4_4:9022784-9022803 Msa0668160:CDS 40.0%
TTGACCTCCATGTTTGAGAA+AGG - chr4_4:9022817-9022836 Msa0668160:CDS 40.0%
TTCACCTTTCTCAAACATGG+AGG + chr4_4:9022824-9022843 None:intergenic 40.0%
CACTTCACCTTTCTCAAACA+TGG + chr4_4:9022827-9022846 None:intergenic 40.0%
CATGTTTGAGAAAGGTGAAG+TGG - chr4_4:9022825-9022844 Msa0668160:CDS 40.0%
! TTTTCCGACGAAACCATCAC+CGG + chr4_4:9017043-9017062 None:intergenic 45.0%
TCGGAAAACGATGAAGTCAC+CGG - chr4_4:9017055-9017074 Msa0668160:CDS 45.0%
AACGGTGAGCTTCAGTTCAT+CGG - chr4_4:9017124-9017143 Msa0668160:CDS 45.0%
TGAGGGGATATACTCTCTCA+AGG - chr4_4:9017960-9017979 Msa0668160:intron 45.0%
GCACAAACTCAGATAGGAAC+AGG - chr4_4:9018062-9018081 Msa0668160:intron 45.0%
ACTCAGATAGGAACAGGACA+CGG - chr4_4:9018068-9018087 Msa0668160:intron 45.0%
!! ATAATGTGTCGGTGTCGTGT+TGG - chr4_4:9018138-9018157 Msa0668160:intron 45.0%
GCAACATGCTGAAGTGGAAT+TGG - chr4_4:9018382-9018401 Msa0668160:intron 45.0%
! CAGTTTGGTGGAGGGATTTA+AGG - chr4_4:9018770-9018789 Msa0668160:intron 45.0%
CTATATCATCATTACCGGGG+TGG - chr4_4:9018794-9018813 Msa0668160:intron 45.0%
AAATTTCTCTCGAACCACCC+CGG + chr4_4:9018811-9018830 None:intergenic 45.0%
!! AAGATTCTGCTGACTCAAGG+GGG + chr4_4:9019029-9019048 None:intergenic 45.0%
AGTCAGCAGAATCTTTGACG+TGG - chr4_4:9019034-9019053 Msa0668160:intron 45.0%
GCGTGACACGTCATCAAAAA+AGG + chr4_4:9019072-9019091 None:intergenic 45.0%
GTTGACGGAGGAAGAGTTAA+GGG + chr4_4:9020365-9020384 None:intergenic 45.0%
AAGAGGACCAAAGTGGTTGA+CGG + chr4_4:9020380-9020399 None:intergenic 45.0%
CTCTACAACCATGTCTGCAA+AGG + chr4_4:9021006-9021025 None:intergenic 45.0%
CTTTGCAGACATGGTTGTAG+AGG - chr4_4:9021004-9021023 Msa0668160:intron 45.0%
GACATGGTTGTAGAGGAGAA+TGG - chr4_4:9021011-9021030 Msa0668160:intron 45.0%
GGTTGTAGAGGAGAATGGAA+TGG - chr4_4:9021016-9021035 Msa0668160:intron 45.0%
GAGTGGTGAATTGGAATTGG+AGG - chr4_4:9021044-9021063 Msa0668160:intron 45.0%
TGGTGAATTGGAATTGGAGG+TGG - chr4_4:9021047-9021066 Msa0668160:intron 45.0%
TGAATTGGAATTGGAGGTGG+CGG - chr4_4:9021050-9021069 Msa0668160:intron 45.0%
! GTGGCGGAGACTATTTCATT+GGG - chr4_4:9021066-9021085 Msa0668160:intron 45.0%
TCATTGGGAAGAAGAGTTGG+TGG - chr4_4:9021081-9021100 Msa0668160:intron 45.0%
!! GAGTTGGTGGAGGTATTTCA+AGG - chr4_4:9021094-9021113 Msa0668160:intron 45.0%
!! GTATTTCAAGGGCTAGCTGT+AGG - chr4_4:9021106-9021125 Msa0668160:intron 45.0%
!! AAGGTATTTTGAGTGGAGGC+CGG - chr4_4:9021195-9021214 Msa0668160:intron 45.0%
!! AGGTTTTAATGGGGAGAAGG+CGG - chr4_4:9021304-9021323 Msa0668160:intron 45.0%
!!! AGGCGGAAATTTTAGCTTGG+AGG - chr4_4:9021321-9021340 Msa0668160:intron 45.0%
CCACAGAGTTTAAAAGCCAC+TGG + chr4_4:9021388-9021407 None:intergenic 45.0%
! CCAGTGGCTTTTAAACTCTG+TGG - chr4_4:9021385-9021404 Msa0668160:intron 45.0%
AGCAATACCAGAACACGCAA+GGG + chr4_4:9021439-9021458 None:intergenic 45.0%
AAGCAATACCAGAACACGCA+AGG + chr4_4:9021440-9021459 None:intergenic 45.0%
TTGCGTGTTCTGGTATTGCT+TGG - chr4_4:9021439-9021458 Msa0668160:intron 45.0%
TGTTCTGGTATTGCTTGGTC+AGG - chr4_4:9021444-9021463 Msa0668160:intron 45.0%
! TTGTTTGCTTGAGGGGGTAT+GGG - chr4_4:9021485-9021504 Msa0668160:intron 45.0%
CTGCAAGCAAAGCTGCAAAA+AGG + chr4_4:9021584-9021603 None:intergenic 45.0%
CTGCATCTTCATCTGTGCAT+TGG - chr4_4:9021604-9021623 Msa0668160:intron 45.0%
CATCTTCATCTGTGCATTGG+AGG - chr4_4:9021607-9021626 Msa0668160:intron 45.0%
! GTCGCAGCAGTTTCATTTTC+CGG - chr4_4:9021697-9021716 Msa0668160:intron 45.0%
! TCGCAGCAGTTTCATTTTCC+GGG - chr4_4:9021698-9021717 Msa0668160:intron 45.0%
ACACAAGAAACATTCGACCC+CGG + chr4_4:9021719-9021738 None:intergenic 45.0%
TTTCTTGTGTAGCGGTTCCA+GGG - chr4_4:9021729-9021748 Msa0668160:intron 45.0%
GTGTGGACAAACATAGAGCA+TGG + chr4_4:9021974-9021993 None:intergenic 45.0%
GCCAAACAGAGAACCAAACA+TGG + chr4_4:9022017-9022036 None:intergenic 45.0%
TCTCTGTTTGGCCCAAACAA+TGG - chr4_4:9022025-9022044 Msa0668160:intron 45.0%
GTTTGGCCCAAACAATGGTT+TGG - chr4_4:9022030-9022049 Msa0668160:intron 45.0%
TGGGTCAAAGATTCTCTGTC+AGG + chr4_4:9022385-9022404 None:intergenic 45.0%
GAGAATCTTTGACCCAAGCA+TGG - chr4_4:9022389-9022408 Msa0668160:intron 45.0%
CATCCAAGACTTCCATGCTT+GGG + chr4_4:9022404-9022423 None:intergenic 45.0%
GTTCCACCTGGAAATGAATC+CGG - chr4_4:9022451-9022470 Msa0668160:intron 45.0%
TTTCCGGATTCATTTCCAGG+TGG + chr4_4:9022457-9022476 None:intergenic 45.0%
AAGACCACAGCCTAAGAAGA+AGG - chr4_4:9022489-9022508 Msa0668160:intron 45.0%
CGAAGATCAGCCTTCTTCTT+AGG + chr4_4:9022502-9022521 None:intergenic 45.0%
GCTGATCTTCGATTAACACC+TGG - chr4_4:9022511-9022530 Msa0668160:intron 45.0%
CGTTATGTGGATTCTCTCAG+AGG - chr4_4:9022632-9022651 Msa0668160:intron 45.0%
GGATTCTCTCAGAGGGTAAT+AGG - chr4_4:9022640-9022659 Msa0668160:intron 45.0%
TTTGAGAAAGGTGAAGTGGC+TGG - chr4_4:9022829-9022848 Msa0668160:CDS 45.0%
!!! TTATTTTATATTTTTTTTTG+GGG - chr4_4:9019107-9019126 Msa0668160:intron 5.0%
!! TTTAAAAAATTAAAAAATTC+TGG - chr4_4:9019150-9019169 Msa0668160:intron 5.0%
!! TGAAAAAAATTTAAAAAATA+CGG - chr4_4:9019285-9019304 Msa0668160:intron 5.0%
!!! ATGAAATTTTTTAAAAAAAT+TGG + chr4_4:9020091-9020110 None:intergenic 5.0%
!! NNNNCTCCGGCACCGATTTC+CGG + chr4_4:9017186-9017205 None:intergenic 50.0%
GGGAAAGCAACATGCTGAAG+TGG - chr4_4:9018376-9018395 Msa0668160:intron 50.0%
! TGGACGGATCTGTTGGTTGA+TGG - chr4_4:9018868-9018887 Msa0668160:intron 50.0%
ACAGGGGCTAAACCCAAAAG+TGG + chr4_4:9018947-9018966 None:intergenic 50.0%
GGTTGACGGAGGAAGAGTTA+AGG + chr4_4:9020366-9020385 None:intergenic 50.0%
TCTTCCTCCGTCAACCACTT+TGG - chr4_4:9020370-9020389 Msa0668160:intron 50.0%
!! GGTGGCGGAGACTATTTCAT+TGG - chr4_4:9021065-9021084 Msa0668160:intron 50.0%
!! TTGGGAAGAAGAGTTGGTGG+AGG - chr4_4:9021084-9021103 Msa0668160:intron 50.0%
!! TATTTTGAGTGGAGGCCGGA+AGG - chr4_4:9021199-9021218 Msa0668160:intron 50.0%
! CTAGGAATGCCACGGCTTTT+AGG - chr4_4:9021276-9021295 Msa0668160:intron 50.0%
ACCTTCATGCCTAAAAGCCG+TGG + chr4_4:9021288-9021307 None:intergenic 50.0%
!! TGGCTTGATTTGGAGCAAGC+AGG - chr4_4:9021405-9021424 Msa0668160:intron 50.0%
!! GGCTTGATTTGGAGCAAGCA+GGG - chr4_4:9021406-9021425 Msa0668160:intron 50.0%
AGTTAAGCCCTTGCGTGTTC+TGG - chr4_4:9021429-9021448 Msa0668160:intron 50.0%
TGTCCCTGCTTGTTTGCTTG+AGG - chr4_4:9021476-9021495 Msa0668160:intron 50.0%
GTCCCTGCTTGTTTGCTTGA+GGG - chr4_4:9021477-9021496 Msa0668160:intron 50.0%
TCCCTGCTTGTTTGCTTGAG+GGG - chr4_4:9021478-9021497 Msa0668160:intron 50.0%
CTTGTTTGCTTGAGGGGGTA+TGG - chr4_4:9021484-9021503 Msa0668160:intron 50.0%
GAGATAGTGCGAGGTTAGCA+GGG - chr4_4:9021516-9021535 Msa0668160:intron 50.0%
AGATAGTGCGAGGTTAGCAG+GGG - chr4_4:9021517-9021536 Msa0668160:intron 50.0%
! CGCAGCAGTTTCATTTTCCG+GGG - chr4_4:9021699-9021718 Msa0668160:intron 50.0%
GTTTCTTGTGTAGCGGTTCC+AGG - chr4_4:9021728-9021747 Msa0668160:intron 50.0%
CTCAATCAGGTCAAGATCCC+TGG + chr4_4:9021749-9021768 None:intergenic 50.0%
TGACCCAAGCATGGAAGTCT+TGG - chr4_4:9022398-9022417 Msa0668160:intron 50.0%
CCATCCAAGACTTCCATGCT+TGG + chr4_4:9022405-9022424 None:intergenic 50.0%
CCAAGCATGGAAGTCTTGGA+TGG - chr4_4:9022402-9022421 Msa0668160:intron 50.0%
ATCAGTGGGAAAGTTCCACC+TGG - chr4_4:9022439-9022458 Msa0668160:intron 50.0%
GCGTTTCCGGATTCATTTCC+AGG + chr4_4:9022460-9022479 None:intergenic 50.0%
ATGAATCCGGAAACGCCACT+TGG - chr4_4:9022464-9022483 Msa0668160:intron 50.0%
TGAATCCGGAAACGCCACTT+GGG - chr4_4:9022465-9022484 Msa0668160:intron 50.0%
TCTTACCCAAGTGGCGTTTC+CGG + chr4_4:9022473-9022492 None:intergenic 50.0%
TCAGCCTTCTTCTTAGGCTG+TGG + chr4_4:9022496-9022515 None:intergenic 50.0%
TGTCCACGAGCTCTTCAAGA+GGG + chr4_4:9022558-9022577 None:intergenic 50.0%
TTGTCCACGAGCTCTTCAAG+AGG + chr4_4:9022559-9022578 None:intergenic 50.0%
TGAAGAGCTCGTGGACAAGT+TGG - chr4_4:9022561-9022580 Msa0668160:intron 50.0%
AAACCTCGCCAATACCTCGC+CGG - chr4_4:9017021-9017040 Msa0668160:CDS 55.0%
AACCATCACCGGCGAGGTAT+TGG + chr4_4:9017032-9017051 None:intergenic 55.0%
CACCGGAGAAGAACTTCCGT+CGG - chr4_4:9017072-9017091 Msa0668160:CDS 55.0%
ACCGGAGAAGAACTTCCGTC+GGG - chr4_4:9017073-9017092 Msa0668160:CDS 55.0%
ACCCGACGGAAGTTCTTCTC+CGG + chr4_4:9017077-9017096 None:intergenic 55.0%
TGTCTCGGCACACCGGAAAT+CGG - chr4_4:9017171-9017190 Msa0668160:CDS 55.0%
!! TGTCGGTGTCGTGTTGGTGT+GGG - chr4_4:9018144-9018163 Msa0668160:intron 55.0%
!! TTCCTCGGATTAGGGGTGTC+CGG + chr4_4:9018189-9018208 None:intergenic 55.0%
AGGACCAAAGTGGTTGACGG+AGG + chr4_4:9020377-9020396 None:intergenic 55.0%
TCTGTTGAGTCACAGGGGTC+AGG - chr4_4:9020820-9020839 Msa0668160:intron 55.0%
CTGTTGAGTCACAGGGGTCA+GGG - chr4_4:9020821-9020840 Msa0668160:intron 55.0%
TGTTGAGTCACAGGGGTCAG+GGG - chr4_4:9020822-9020841 Msa0668160:intron 55.0%
GGGGATCTCCTTTGCAGACA+TGG - chr4_4:9020995-9021014 Msa0668160:intron 55.0%
!! TTCAAGGGCTAGCTGTAGGG+AGG - chr4_4:9021110-9021129 Msa0668160:intron 55.0%
!! TCAAGGGCTAGCTGTAGGGA+GGG - chr4_4:9021111-9021130 Msa0668160:intron 55.0%
GGAGAATGGCAGAAGGGAGT+GGG - chr4_4:9021134-9021153 Msa0668160:intron 55.0%
GAGAATGGCAGAAGGGAGTG+GGG - chr4_4:9021135-9021154 Msa0668160:intron 55.0%
! GCCACGGCTTTTAGGCATGA+AGG - chr4_4:9021284-9021303 Msa0668160:intron 55.0%
GGTATTGCTTGGTCAGGTGC+TGG - chr4_4:9021450-9021469 Msa0668160:intron 55.0%
CCCCCTCAAGCAAACAAGCA+GGG + chr4_4:9021482-9021501 None:intergenic 55.0%
CCCTGCTTGTTTGCTTGAGG+GGG - chr4_4:9021479-9021498 Msa0668160:intron 55.0%
ACCCCCTCAAGCAAACAAGC+AGG + chr4_4:9021483-9021502 None:intergenic 55.0%
! TTGCTTGAGGGGGTATGGGT+TGG - chr4_4:9021489-9021508 Msa0668160:intron 55.0%
CGAGATAGTGCGAGGTTAGC+AGG - chr4_4:9021515-9021534 Msa0668160:intron 55.0%
! CTGTTTTGCAGTCGGTGTGC+TGG - chr4_4:9021645-9021664 Msa0668160:intron 55.0%
! AGGCTGTGGTCTTACCCAAG+TGG + chr4_4:9022482-9022501 None:intergenic 55.0%
GTTAGTTGCACGTGACGACC+AGG + chr4_4:9022532-9022551 None:intergenic 55.0%
CACGAGCTCTTCAAGAGGGA+CGG + chr4_4:9022554-9022573 None:intergenic 55.0%
! TCCAGAAGTGCGCCGTTATG+TGG - chr4_4:9022619-9022638 Msa0668160:intron 55.0%
TCCACATAACGGCGCACTTC+TGG + chr4_4:9022623-9022642 None:intergenic 55.0%
! CTCGCCGGTGATGGTTTCGT+CGG - chr4_4:9017036-9017055 Msa0668160:CDS 60.0%
GAAGAACTTCCGTCGGGTGC+CGG - chr4_4:9017079-9017098 Msa0668160:CDS 60.0%
CTGCTACTGTCTCGGCACAC+CGG - chr4_4:9017164-9017183 Msa0668160:CDS 60.0%
!! GTGTCGGTGTCGTGTTGGTG+TGG - chr4_4:9018143-9018162 Msa0668160:intron 60.0%
!! TGCTGACTCAAGGGGGTCAG+GGG + chr4_4:9019022-9019041 None:intergenic 60.0%
!! CTGCTGACTCAAGGGGGTCA+GGG + chr4_4:9019023-9019042 None:intergenic 60.0%
!! TCTGCTGACTCAAGGGGGTC+AGG + chr4_4:9019024-9019043 None:intergenic 60.0%
!! TCTATGAGGTGGCGCTGACG+TGG + chr4_4:9020799-9020818 None:intergenic 60.0%
!! CAAGGGCTAGCTGTAGGGAG+GGG - chr4_4:9021112-9021131 Msa0668160:intron 60.0%
!! AAGGGCTAGCTGTAGGGAGG+GGG - chr4_4:9021113-9021132 Msa0668160:intron 60.0%
AGCTGTAGGGAGGGGGAGAA+TGG - chr4_4:9021120-9021139 Msa0668160:intron 60.0%
GGAGGGGGAGAATGGCAGAA+GGG - chr4_4:9021128-9021147 Msa0668160:intron 60.0%
GGGAGAATGGCAGAAGGGAG+TGG - chr4_4:9021133-9021152 Msa0668160:intron 60.0%
AATGGCAGAAGGGAGTGGGG+AGG - chr4_4:9021138-9021157 Msa0668160:intron 60.0%
!! CTTGAGGGGGTATGGGTTGG+AGG - chr4_4:9021492-9021511 Msa0668160:intron 60.0%
GTTGGAGGCGAGATAGTGCG+AGG - chr4_4:9021507-9021526 Msa0668160:intron 60.0%
CGTCCCTCTTGAAGAGCTCG+TGG - chr4_4:9022552-9022571 Msa0668160:intron 60.0%
!! TCACCGGCGAGGTATTGGCG+AGG + chr4_4:9017027-9017046 None:intergenic 65.0%
CGCCAATACCTCGCCGGTGA+TGG - chr4_4:9017027-9017046 Msa0668160:CDS 65.0%
CGACGAAACCATCACCGGCG+AGG + chr4_4:9017038-9017057 None:intergenic 65.0%
GCGTAAACTCCGGCACCCGA+CGG + chr4_4:9017091-9017110 None:intergenic 65.0%
GGCACACCGGAAATCGGTGC+CGG - chr4_4:9017177-9017196 Msa0668160:CDS 65.0%
CACCGGACACCCCTAATCCG+AGG - chr4_4:9018184-9018203 Msa0668160:intron 65.0%
GGGAGGGGGAGAATGGCAGA+AGG - chr4_4:9021127-9021146 Msa0668160:intron 65.0%
GCAGAAGGGAGTGGGGAGGA+GGG - chr4_4:9021142-9021161 Msa0668160:intron 65.0%
GTGCGAGGTTAGCAGGGGCT+TGG - chr4_4:9021522-9021541 Msa0668160:intron 65.0%
GGCAGAAGGGAGTGGGGAGG+AGG - chr4_4:9021141-9021160 Msa0668160:intron 70.0%
AGGGAGTGGGGAGGAGGGAG+CGG - chr4_4:9021147-9021166 Msa0668160:intron 70.0%
GGGAGTGGGGAGGAGGGAGC+GGG - chr4_4:9021148-9021167 Msa0668160:intron 75.0%
GGAGTGGGGAGGAGGGAGCG+GGG - chr4_4:9021149-9021168 Msa0668160:intron 75.0%
GAGTGGGGAGGAGGGAGCGG+GGG - chr4_4:9021150-9021169 Msa0668160:intron 75.0%
! GGGGAGGAGGGAGCGGGGGC+TGG - chr4_4:9021154-9021173 Msa0668160:intron 85.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 9017010 9022867 9017010 ID=Msa0668160;Name=Msa0668160
chr4_4 mRNA 9017010 9022867 9017010 ID=Msa0668160-mRNA-1;Parent=Msa0668160;Name=Msa0668160-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|0|1|2|0|228
chr4_4 exon 9022685 9022867 9022685 ID=Msa0668160-mRNA-1:exon:2872;Parent=Msa0668160-mRNA-1
chr4_4 exon 9017010 9017513 9017010 ID=Msa0668160-mRNA-1:exon:2871;Parent=Msa0668160-mRNA-1
chr4_4 CDS 9022685 9022867 9022685 ID=Msa0668160-mRNA-1:cds;Parent=Msa0668160-mRNA-1
chr4_4 CDS 9017010 9017513 9017010 ID=Msa0668160-mRNA-1:cds;Parent=Msa0668160-mRNA-1
Gene Sequence

>Msa0668160

ATGGCAGTGAAAAACCTCGCCAATACCTCGCCGGTGATGGTTTCGTCGGAAAACGATGAAGTCACCGGAGAAGAACTTCCGTCGGGTGCCGGAGTTTACGCCGTTTATGATAAGAACGGTGAGCTTCAGTTCATCGGTTTGTCGCGTAATATTGCTGCTACTGTCTCGGCACACCGGAAATCGGTTGGGGTAGTGGATGAACCTGACAGAGAATCTTTGACCCAAGCATGGAAGTCTTGGATGGAAGAACACATAAAGATCAGTGGGAAAGTTCCACCTGGAAATGAATCCGGAAACGCCACTTGGGTAAGACCACAGCCTAAGAAGAAGGCTGATCTTCGATTAACACCTGGTCGTCACGTGCAACTAACCGTCCCTCTTGAAGAGCTCGTGGACAAGTTGGTAAAAGAGAATAAGGTAGTTGCATTCATCAAGGGATCCAGAAGTGCGCCGTTATGTGGATTCTCTCAGAGGGTAATAGGCATTCTTGAAAAGGAAGGAGTAGATTATGAGAGTGTAGATGTATTGGATGAAGATTATAACTATGGATTGAGGGAGACACTTAAAAAGTATAGCAATTGGCCTACATTCCCTCAGATATTTTTGAATGGTGAACTTGTTGGTGGTTGTGATATATTGACCTCCATGTTTGAGAAAGGTGAAGTGGCTGGTTTGTTCAAAAAGTAA

Protein sequence

>Msa0668160

MAVKNLANTSPVMVSSENDEVTGEELPSGAGVYAVYDKNGELQFIGLSRNIAATVSAHRKSVGVVDEPDRESLTQAWKSWMEEHIKISGKVPPGNESGNATWVRPQPKKKADLRLTPGRHVQLTVPLEELVDKLVKENKVVAFIKGSRSAPLCGFSQRVIGILEKEGVDYESVDVLDEDYNYGLRETLKKYSNWPTFPQIFLNGELVGGCDILTSMFEKGEVAGLFKK*