AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00883

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00883.t1 MTR_2g022200 100.000 205 0 0 1 205 1 205 1.01e-149 414
MS.gene00883.t1 MTR_4g073560 97.468 79 2 0 117 195 118 196 1.31e-47 155
MS.gene00883.t1 MTR_8g077540 41.566 166 89 2 18 182 17 175 1.20e-38 131
MS.gene00883.t1 MTR_8g077540 41.566 166 89 2 18 182 43 201 3.54e-38 131
MS.gene00883.t1 MTR_5g034130 34.831 178 105 2 5 180 5 173 4.78e-37 127
MS.gene00883.t1 MTR_5g034125 34.831 178 105 2 5 180 5 173 4.78e-37 127
MS.gene00883.t1 MTR_7g109960 34.831 178 105 2 5 180 5 173 5.09e-37 127
MS.gene00883.t1 MTR_6g005820 34.831 178 105 2 5 180 5 173 5.32e-37 127
MS.gene00883.t1 MTR_1g086480 34.831 178 105 2 5 180 5 173 5.38e-37 127
MS.gene00883.t1 MTR_5g016540 34.682 173 102 2 10 180 10 173 2.89e-36 125
MS.gene00883.t1 MTR_4g128910 35.135 185 107 2 4 185 4 178 5.74e-35 122
MS.gene00883.t1 MTR_1g076550 34.973 183 106 2 1 180 1 173 3.16e-32 115
MS.gene00883.t1 MTR_5g015370 32.787 183 110 2 7 182 2 178 1.57e-30 110
MS.gene00883.t1 MTR_5g007810 31.250 192 121 2 1 190 1 183 2.80e-29 107
MS.gene00883.t1 MTR_4g026950 32.727 165 105 1 18 182 1 159 3.32e-29 107
MS.gene00883.t1 MTR_4g077640 31.579 190 119 2 1 188 1 181 3.40e-29 107
MS.gene00883.t1 MTR_5g078090 32.240 183 111 2 7 182 2 178 2.74e-28 105
MS.gene00883.t1 MTR_5g007820 30.102 196 122 3 1 191 1 186 4.44e-27 102
MS.gene00883.t1 MTR_7g112090 37.584 149 81 3 7 155 15 151 2.01e-23 92.8
MS.gene00883.t1 MTR_2g034640 37.267 161 83 4 1 155 3 151 4.22e-23 92.0
MS.gene00883.t1 MTR_4g121860 37.267 161 83 4 1 155 3 151 4.87e-22 89.4
MS.gene00883.t1 MTR_8g077540 37.500 104 58 1 18 121 17 113 7.64e-19 79.3
MS.gene00883.t1 MTR_5g007840 22.467 227 118 4 1 191 1 205 5.02e-13 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00883.t1 AT5G52210 79.798 198 40 0 1 198 1 198 1.13e-115 328
MS.gene00883.t1 AT5G52210 79.798 198 40 0 1 198 1 198 1.13e-115 328
MS.gene00883.t1 AT5G14670 34.831 178 105 2 5 180 5 173 5.00e-37 127
MS.gene00883.t1 AT5G14670 34.831 178 105 2 5 180 5 173 5.00e-37 127
MS.gene00883.t1 AT5G14670 34.831 178 105 2 5 180 5 173 6.29e-37 127
MS.gene00883.t1 AT1G70490 34.831 178 105 2 5 180 5 173 7.38e-37 127
MS.gene00883.t1 AT1G70490 34.831 178 105 2 5 180 5 173 7.38e-37 127
MS.gene00883.t1 AT1G70490 34.831 178 105 2 5 180 5 173 7.38e-37 127
MS.gene00883.t1 AT1G70490 34.831 178 105 2 5 180 5 173 7.38e-37 127
MS.gene00883.t1 AT1G70490 34.831 178 105 2 5 180 5 173 7.38e-37 127
MS.gene00883.t1 AT1G70490 34.831 178 105 2 5 180 5 173 7.38e-37 127
MS.gene00883.t1 AT1G23490 34.831 178 105 2 5 180 5 173 7.38e-37 127
MS.gene00883.t1 AT1G70490 34.831 178 105 2 5 180 5 173 7.38e-37 127
MS.gene00883.t1 AT1G10630 34.831 178 105 2 5 180 5 173 7.46e-37 127
MS.gene00883.t1 AT1G10630 34.831 178 105 2 5 180 5 173 7.46e-37 127
MS.gene00883.t1 AT2G47170 34.831 178 105 2 5 180 5 173 1.05e-36 126
MS.gene00883.t1 AT2G47170 34.831 178 105 2 5 180 5 173 1.05e-36 126
MS.gene00883.t1 AT2G47170 34.831 178 105 2 5 180 5 173 1.05e-36 126
MS.gene00883.t1 AT3G62290 34.831 178 105 2 5 180 5 173 1.31e-36 126
MS.gene00883.t1 AT3G62290 34.831 178 105 2 5 180 5 173 1.31e-36 126
MS.gene00883.t1 AT3G62290 34.831 178 105 2 5 180 5 173 1.31e-36 126
MS.gene00883.t1 AT2G18390 39.759 166 92 2 18 182 17 175 3.15e-36 125
MS.gene00883.t1 AT2G15310 33.500 200 118 3 1 194 1 191 5.95e-35 123
MS.gene00883.t1 AT2G24765 34.783 184 109 2 4 185 4 178 1.31e-34 121
MS.gene00883.t1 AT3G22950 34.831 178 103 2 8 182 8 175 4.24e-32 115
MS.gene00883.t1 AT3G22950 34.831 178 103 2 8 182 8 175 4.24e-32 115
MS.gene00883.t1 AT5G67560 33.333 189 113 2 7 188 2 184 3.05e-31 112
MS.gene00883.t1 AT3G49870 33.708 178 112 1 5 182 7 178 3.66e-31 112
MS.gene00883.t1 AT3G49870 34.783 161 99 1 22 182 5 159 2.21e-29 107
MS.gene00883.t1 AT3G03120 30.918 207 125 3 1 205 1 191 2.34e-29 108
MS.gene00883.t1 AT5G37680 33.333 183 109 2 7 182 2 178 5.87e-29 107
MS.gene00883.t1 AT5G17060 31.053 190 120 2 1 188 1 181 1.18e-28 106
MS.gene00883.t1 AT5G17060 31.053 190 120 2 1 188 1 181 1.18e-28 106
MS.gene00883.t1 AT2G24765 37.778 135 71 2 4 135 4 128 4.42e-26 98.2
MS.gene00883.t1 AT1G02440 29.032 186 113 5 12 186 12 189 2.07e-25 97.8
MS.gene00883.t1 AT5G37680 35.878 131 84 0 52 182 1 131 2.45e-24 93.6
MS.gene00883.t1 AT3G49860 30.120 166 110 1 17 182 11 170 5.22e-24 94.0
MS.gene00883.t1 AT1G02430 27.957 186 115 5 12 186 12 189 3.83e-23 92.0
MS.gene00883.t1 AT4G02080 38.255 149 80 3 7 155 15 151 6.76e-23 91.7
MS.gene00883.t1 AT3G62560 39.041 146 77 3 7 152 15 148 8.99e-23 91.3
MS.gene00883.t1 AT1G56330 37.267 161 83 4 1 155 3 151 1.45e-22 90.5
MS.gene00883.t1 AT3G03120 33.094 139 82 2 1 137 1 130 3.60e-22 88.2
MS.gene00883.t1 AT1G09180 37.179 156 90 3 1 155 3 151 1.19e-21 88.2
MS.gene00883.t1 AT1G02430 27.564 156 98 4 12 160 12 159 1.93e-18 79.0

Find 48 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTGGTCTTCGCTCAATC+TGG 0.301799 2.3:+65649104 MS.gene00883:intron
TCTTCAGATGATACTGCTTC+AGG 0.332255 2.3:-65649562 None:intergenic
CAAATAGAAAACTTGTGTTC+TGG 0.340227 2.3:+65648420 MS.gene00883:CDS
AATGTTGCAGGCTGGGGATC+AGG 0.347707 2.3:+65650071 MS.gene00883:intron
CCAACTGTGGGATTGAATAT+TGG 0.365635 2.3:+65648383 MS.gene00883:CDS
AAATAGAAAACTTGTGTTCT+GGG 0.404046 2.3:+65648421 MS.gene00883:CDS
AAAACTTGTGTTCTGGGACC+TGG 0.431630 2.3:+65648427 MS.gene00883:CDS
GACTGAAATGTTGAGATTGC+GGG 0.443386 2.3:+65650138 MS.gene00883:CDS
GTTCTGGGACCTGGGCGGCC+AGG 0.460687 2.3:+65648436 MS.gene00883:CDS
AAACTTGTGTTCTGGGACCT+GGG 0.461013 2.3:+65648428 MS.gene00883:CDS
CGGGCAGGTGCAATGGGTCC+AGG 0.467778 2.3:+65650157 MS.gene00883:CDS
GTATCTAGATTTAAAGAAGC+TGG 0.477589 2.3:+65649594 MS.gene00883:CDS
GAGATTGCGGGCAGGTGCAA+TGG 0.494160 2.3:+65650150 MS.gene00883:CDS
AGATTGCGGGCAGGTGCAAT+GGG 0.499243 2.3:+65650151 MS.gene00883:CDS
CAGGACCTCTAGGCAGGACC+TGG 0.515509 2.3:-65650175 None:intergenic
ACAGTTGGAACAATTCGATC+AGG 0.520181 2.3:-65648368 None:intergenic
GCTTGGTCTTCGCTCAATCT+GGG 0.527000 2.3:+65649105 MS.gene00883:intron
ATGTTGCAGGCTGGGGATCA+GGG 0.529063 2.3:+65650072 MS.gene00883:intron
CCAATATTCAATCCCACAGT+TGG 0.529873 2.3:-65648383 None:intergenic
GAAGCCGTGTCAGCATATGA+TGG 0.535295 2.3:+65649637 MS.gene00883:CDS
GATTGACAAGGCTGGCAAAA+CGG 0.536788 2.3:+65648195 MS.gene00883:CDS
TTGTTTGCTAATATCAAAAG+AGG 0.540730 2.3:-65649396 None:intergenic
TCTAGGCAGGACCTCTAGGC+AGG 0.545863 2.3:-65650181 None:intergenic
GAAGATGCAAAGTCTGCACT+TGG 0.546377 2.3:+65649193 MS.gene00883:CDS
TTTATGATACCTGGCCGCCC+AGG 0.548036 2.3:-65648445 None:intergenic
GAATATTGGTCGAATTGAAG+TGG 0.551287 2.3:+65648397 MS.gene00883:CDS
TGTTTGCTAATATCAAAAGA+GGG 0.557064 2.3:-65649395 None:intergenic
GATCGAATTGTTCCAACTGT+GGG 0.562879 2.3:+65648371 MS.gene00883:CDS
GGACTGAAATGTTGAGATTG+CGG 0.582621 2.3:+65650137 MS.gene00883:CDS
TGATCGAATTGTTCCAACTG+TGG 0.589660 2.3:+65648370 MS.gene00883:CDS
AGAAAAGGTGCTTCGACATG+AGG 0.590643 2.3:+65649359 MS.gene00883:intron
TGGGTCCAGGTCCTGCCTAG+AGG 0.592022 2.3:+65650170 MS.gene00883:CDS
AAGCCGTGTCAGCATATGAT+GGG 0.595990 2.3:+65649638 MS.gene00883:CDS
GGAAAGTGCAGAATGGCTTG+TGG 0.602944 2.3:+65650093 MS.gene00883:CDS
TCGGTGTACACAAACGTAGA+AGG 0.604189 2.3:+65648338 MS.gene00883:CDS
TATCATCTGAAGAACTAGCT+CGG 0.614679 2.3:+65649572 MS.gene00883:CDS
CTGGGAGAAATATTATGAAG+AGG 0.615056 2.3:+65649123 MS.gene00883:CDS
GGATCAGGGAAAGTGCAGAA+TGG 0.620734 2.3:+65650086 MS.gene00883:CDS
TTTGCTTGAGAAGATAAAGT+CGG 0.631382 2.3:+65648319 MS.gene00883:CDS
TTACCCATCATATGCTGACA+CGG 0.632005 2.3:-65649641 None:intergenic
AAGTGATGGAGAGAAGCAAG+AGG 0.637928 2.3:+65650116 MS.gene00883:CDS
CTTCGACATGAGGATCTCAA+AGG 0.639558 2.3:+65649369 MS.gene00883:CDS
GAAATGTTGAGATTGCGGGC+AGG 0.639681 2.3:+65650142 MS.gene00883:CDS
GTTGGAACAATTCGATCAGG+AGG 0.646916 2.3:-65648365 None:intergenic
AGAATGGCTTGTGGAAGTGA+TGG 0.647620 2.3:+65650102 MS.gene00883:CDS
TTTGCATCTTCAAATCGTGA+CGG 0.660305 2.3:-65649181 None:intergenic
GTTTGCTAATATCAAAAGAG+GGG 0.667030 2.3:-65649394 None:intergenic
CTTGTGTTCTGGGACCTGGG+CGG 0.788115 2.3:+65648431 MS.gene00883:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTCTATAATTATGATATT+TGG + chr2.3:65648493-65648512 MS.gene00883:intron 10.0%
!! ACTAAATTTATACTAATTTA+AGG + chr2.3:65649248-65649267 MS.gene00883:intron 10.0%
!! TTTATCTTATAATATGAAAA+GGG - chr2.3:65649058-65649077 None:intergenic 10.0%
!!! TTTTATCTTATAATATGAAA+AGG - chr2.3:65649059-65649078 None:intergenic 10.0%
!! AGTAGTTTCTTAAAAAATAA+GGG - chr2.3:65648237-65648256 None:intergenic 15.0%
!! ATTATTAATTAATGAGTGAT+AGG + chr2.3:65649853-65649872 MS.gene00883:intron 15.0%
!! TAAGAAAAAAATAACCATTA+AGG + chr2.3:65649749-65649768 MS.gene00883:intron 15.0%
!! AAACATAAAAAATAAGACCT+CGG - chr2.3:65648644-65648663 None:intergenic 20.0%
!! ATATAAAGTAACAGTTCTTA+TGG - chr2.3:65648818-65648837 None:intergenic 20.0%
!! CAGTAGTTTCTTAAAAAATA+AGG - chr2.3:65648238-65648257 None:intergenic 20.0%
!! GAAATGTAATACAAAGAATT+AGG - chr2.3:65650026-65650045 None:intergenic 20.0%
!! TATTGAAAATGAAATGGTAA+TGG - chr2.3:65649710-65649729 None:intergenic 20.0%
!!! TTACCATTTCATTTTCAATA+AGG + chr2.3:65649710-65649729 MS.gene00883:intron 20.0%
! AAATAGAAAACTTGTGTTCT+GGG + chr2.3:65648421-65648440 MS.gene00883:CDS 25.0%
! AACATAAAAAATAAGACCTC+GGG - chr2.3:65648643-65648662 None:intergenic 25.0%
! ATCATTTCATTCTACTTCAA+TGG + chr2.3:65648586-65648605 MS.gene00883:intron 25.0%
! GATCCTTATTGAAAATGAAA+TGG - chr2.3:65649716-65649735 None:intergenic 25.0%
! GTTGCCTAAAAATAATAAGT+GGG + chr2.3:65649889-65649908 MS.gene00883:intron 25.0%
! TACTTCATTATGTACCTTAA+TGG - chr2.3:65649766-65649785 None:intergenic 25.0%
! TATGTTGAAATTAAACAGCA+CGG + chr2.3:65649308-65649327 MS.gene00883:intron 25.0%
! TGTTGCCTAAAAATAATAAG+TGG + chr2.3:65649888-65649907 MS.gene00883:intron 25.0%
! TTGCCTAAAAATAATAAGTG+GGG + chr2.3:65649890-65649909 MS.gene00883:intron 25.0%
! TTTATACTAATTTAAGGAGC+TGG + chr2.3:65649254-65649273 MS.gene00883:intron 25.0%
!! GATGAATTGTTAATTTGACT+TGG + chr2.3:65648515-65648534 MS.gene00883:intron 25.0%
!! TGTTTGCTAATATCAAAAGA+GGG - chr2.3:65649398-65649417 None:intergenic 25.0%
!! TTGTTTGCTAATATCAAAAG+AGG - chr2.3:65649399-65649418 None:intergenic 25.0%
!!! TTTCGTTATTTTATGGACTT+TGG + chr2.3:65648128-65648147 MS.gene00883:CDS 25.0%
AAATAATAAGTGGGGTTGAA+AGG + chr2.3:65649898-65649917 MS.gene00883:intron 30.0%
AATCAAATGTTCGTGCATAT+TGG - chr2.3:65648934-65648953 None:intergenic 30.0%
AATGATCTGTTTACCAGAAA+AGG + chr2.3:65649344-65649363 MS.gene00883:intron 30.0%
AGAATAACACAGAACTTCAA+GGG - chr2.3:65649979-65649998 None:intergenic 30.0%
CAAATAGAAAACTTGTGTTC+TGG + chr2.3:65648420-65648439 MS.gene00883:CDS 30.0%
CATAAAAAGGGTGAAATAGA+TGG - chr2.3:65648866-65648885 None:intergenic 30.0%
CTAAACATTTGAGTCAATTG+GGG + chr2.3:65649925-65649944 MS.gene00883:intron 30.0%
GACTATCTATTTATGATACC+TGG - chr2.3:65648457-65648476 None:intergenic 30.0%
GCTAAACATTTGAGTCAATT+GGG + chr2.3:65649924-65649943 MS.gene00883:intron 30.0%
GTATCTAGATTTAAAGAAGC+TGG + chr2.3:65649594-65649613 MS.gene00883:CDS 30.0%
TCAAACTTCAGCCATAAAAA+GGG - chr2.3:65648878-65648897 None:intergenic 30.0%
TGCATACGAACTATGTTATT+TGG + chr2.3:65648839-65648858 MS.gene00883:intron 30.0%
TTCAAACTTCAGCCATAAAA+AGG - chr2.3:65648879-65648898 None:intergenic 30.0%
TTCTCTCTGAACAATTCTTT+GGG + chr2.3:65648714-65648733 MS.gene00883:intron 30.0%
TTTCTCTCTGAACAATTCTT+TGG + chr2.3:65648713-65648732 MS.gene00883:intron 30.0%
TTTGCTTGAGAAGATAAAGT+CGG + chr2.3:65648319-65648338 MS.gene00883:CDS 30.0%
! CAATTGACTCAAATGTTTAG+CGG - chr2.3:65649925-65649944 None:intergenic 30.0%
! CATCTATTTCACCCTTTTTA+TGG + chr2.3:65648864-65648883 MS.gene00883:intron 30.0%
! GTTTGCTAATATCAAAAGAG+GGG - chr2.3:65649397-65649416 None:intergenic 30.0%
!! CAACCCCACTTATTATTTTT+AGG - chr2.3:65649896-65649915 None:intergenic 30.0%
!! TTCATTGACTCTAGCTTTAT+GGG + chr2.3:65648551-65648570 MS.gene00883:intron 30.0%
!! TTTATCCTTTGAAATGTTGC+AGG + chr2.3:65650059-65650078 MS.gene00883:intron 30.0%
AAAAAAATCCCCTAGACTAC+AGG - chr2.3:65650002-65650021 None:intergenic 35.0%
AAACACACACTAAGCCAATT+AGG - chr2.3:65648756-65648775 None:intergenic 35.0%
AAATAGGATCACAACTAACG+AGG - chr2.3:65649470-65649489 None:intergenic 35.0%
AACTACTGAACTTTGTCTTG+TGG + chr2.3:65648250-65648269 MS.gene00883:intron 35.0%
CCAAAGATGGCGAAAAAAAT+AGG - chr2.3:65649486-65649505 None:intergenic 35.0%
CGCTAAACATTTGAGTCAAT+TGG + chr2.3:65649923-65649942 MS.gene00883:intron 35.0%
CTGAACATTCTTCTTATTGC+AGG + chr2.3:65649534-65649553 MS.gene00883:intron 35.0%
CTGGGAGAAATATTATGAAG+AGG + chr2.3:65649123-65649142 MS.gene00883:CDS 35.0%
GAATATTGGTCGAATTGAAG+TGG + chr2.3:65648397-65648416 MS.gene00883:CDS 35.0%
GAGAATAACACAGAACTTCA+AGG - chr2.3:65649980-65649999 None:intergenic 35.0%
TATCATCTGAAGAACTAGCT+CGG + chr2.3:65649572-65649591 MS.gene00883:CDS 35.0%
TCCCTGTCCTATAAAATGTT+CGG + chr2.3:65649441-65649460 MS.gene00883:intron 35.0%
TGTTATTCTCCTGTAGTCTA+GGG + chr2.3:65649990-65650009 MS.gene00883:intron 35.0%
TTTGCATCTTCAAATCGTGA+CGG - chr2.3:65649184-65649203 None:intergenic 35.0%
! AACCGAACATTTTATAGGAC+AGG - chr2.3:65649446-65649465 None:intergenic 35.0%
! ACCGAACATTTTATAGGACA+GGG - chr2.3:65649445-65649464 None:intergenic 35.0%
! AGCTTCGTGTACTCATTTTA+GGG + chr2.3:65648173-65648192 MS.gene00883:CDS 35.0%
! CTGATATGTATGTCACTTGA+GGG + chr2.3:65649806-65649825 MS.gene00883:intron 35.0%
! GAGGAAACCGAACATTTTAT+AGG - chr2.3:65649451-65649470 None:intergenic 35.0%
! TCTGATATGTATGTCACTTG+AGG + chr2.3:65649805-65649824 MS.gene00883:intron 35.0%
!! AAATGGTAATGGATCATCAC+AGG - chr2.3:65649699-65649718 None:intergenic 35.0%
!! ACTCATTTTAGGGATTGACA+AGG + chr2.3:65648183-65648202 MS.gene00883:CDS 35.0%
!! GTTCATTGACTCTAGCTTTA+TGG + chr2.3:65648550-65648569 MS.gene00883:intron 35.0%
!!! CCTATTTTTTTCGCCATCTT+TGG + chr2.3:65649483-65649502 MS.gene00883:intron 35.0%
ACAGTTGGAACAATTCGATC+AGG - chr2.3:65648371-65648390 None:intergenic 40.0%
CACTAAGCCAATTAGGTTAG+TGG - chr2.3:65648749-65648768 None:intergenic 40.0%
CCAACTGTGGGATTGAATAT+TGG + chr2.3:65648383-65648402 MS.gene00883:CDS 40.0%
CCAATATTCAATCCCACAGT+TGG - chr2.3:65648386-65648405 None:intergenic 40.0%
GACTGAAATGTTGAGATTGC+GGG + chr2.3:65650138-65650157 MS.gene00883:CDS 40.0%
GATCGAATTGTTCCAACTGT+GGG + chr2.3:65648371-65648390 MS.gene00883:CDS 40.0%
GGACTGAAATGTTGAGATTG+CGG + chr2.3:65650137-65650156 MS.gene00883:CDS 40.0%
GTTATTCTCCTGTAGTCTAG+GGG + chr2.3:65649991-65650010 MS.gene00883:intron 40.0%
GTTGATACACACACCAAAGA+TGG - chr2.3:65649499-65649518 None:intergenic 40.0%
TCTACATTACATAGTTCCCG+AGG + chr2.3:65648624-65648643 MS.gene00883:intron 40.0%
TCTTCAGATGATACTGCTTC+AGG - chr2.3:65649565-65649584 None:intergenic 40.0%
TGATCGAATTGTTCCAACTG+TGG + chr2.3:65648370-65648389 MS.gene00883:CDS 40.0%
TTACCCATCATATGCTGACA+CGG - chr2.3:65649644-65649663 None:intergenic 40.0%
! CTCTGAACAATTCTTTGGGA+AGG + chr2.3:65648718-65648737 MS.gene00883:intron 40.0%
! GAGCTTCGTGTACTCATTTT+AGG + chr2.3:65648172-65648191 MS.gene00883:CDS 40.0%
! GTGTTATTCTCCTGTAGTCT+AGG + chr2.3:65649989-65650008 MS.gene00883:intron 40.0%
!! ATTTTAGGGATTGACAAGGC+TGG + chr2.3:65648187-65648206 MS.gene00883:CDS 40.0%
AAGCCGTGTCAGCATATGAT+GGG + chr2.3:65649638-65649657 MS.gene00883:CDS 45.0%
AATTTCCCCGCTTATCAGCT+TGG + chr2.3:65649088-65649107 MS.gene00883:intron 45.0%
AGTGATAGCAAGATGTGCAG+AGG - chr2.3:65649031-65649050 None:intergenic 45.0%
CTTCGACATGAGGATCTCAA+AGG + chr2.3:65649369-65649388 MS.gene00883:CDS 45.0%
GAAGATGCAAAGTCTGCACT+TGG + chr2.3:65649193-65649212 MS.gene00883:CDS 45.0%
GATTGACAAGGCTGGCAAAA+CGG + chr2.3:65648195-65648214 MS.gene00883:CDS 45.0%
GGCTACTCCACTAACCTAAT+TGG + chr2.3:65648739-65648758 MS.gene00883:intron 45.0%
GGTGTGTGTATCAACAGTGA+TGG + chr2.3:65649504-65649523 MS.gene00883:intron 45.0%
GTTGGAACAATTCGATCAGG+AGG - chr2.3:65648368-65648387 None:intergenic 45.0%
TCGGTGTACACAAACGTAGA+AGG + chr2.3:65648338-65648357 MS.gene00883:CDS 45.0%
TTGAGTCAATTGGGGCCTTT+GGG + chr2.3:65649933-65649952 MS.gene00883:intron 45.0%
TTTGAGTCAATTGGGGCCTT+TGG + chr2.3:65649932-65649951 MS.gene00883:intron 45.0%
! AAGTGATGGAGAGAAGCAAG+AGG + chr2.3:65650116-65650135 MS.gene00883:CDS 45.0%
! AGAATGGCTTGTGGAAGTGA+TGG + chr2.3:65650102-65650121 MS.gene00883:CDS 45.0%
!! AAAACTTGTGTTCTGGGACC+TGG + chr2.3:65648427-65648446 MS.gene00883:CDS 45.0%
!! AAACTTGTGTTCTGGGACCT+GGG + chr2.3:65648428-65648447 MS.gene00883:CDS 45.0%
!! AGAAAAGGTGCTTCGACATG+AGG + chr2.3:65649359-65649378 MS.gene00883:intron 45.0%
!! CCTTTGAAATGTTGCAGGCT+GGG + chr2.3:65650064-65650083 MS.gene00883:intron 45.0%
!! CTTTGAAATGTTGCAGGCTG+GGG + chr2.3:65650065-65650084 MS.gene00883:intron 45.0%
!! TCATGTCGAAGCACCTTTTC+TGG - chr2.3:65649360-65649379 None:intergenic 45.0%
!! TCCTTTGAAATGTTGCAGGC+TGG + chr2.3:65650063-65650082 MS.gene00883:intron 45.0%
!!! GTTTTTTTATTTTAAATTAT+AGG + chr2.3:65648772-65648791 MS.gene00883:intron 5.0%
CCCAGCCTGCAACATTTCAA+AGG - chr2.3:65650067-65650086 None:intergenic 50.0%
CGAAGACCAAGCTGATAAGC+GGG - chr2.3:65649097-65649116 None:intergenic 50.0%
GAAATGTTGAGATTGCGGGC+AGG + chr2.3:65650142-65650161 MS.gene00883:CDS 50.0%
GAAGACCAAGCTGATAAGCG+GGG - chr2.3:65649096-65649115 None:intergenic 50.0%
GAAGCCGTGTCAGCATATGA+TGG + chr2.3:65649637-65649656 MS.gene00883:CDS 50.0%
GCGAAGACCAAGCTGATAAG+CGG - chr2.3:65649098-65649117 None:intergenic 50.0%
TCCTGCTACTACAAGTGTGC+AGG - chr2.3:65648986-65649005 None:intergenic 50.0%
! AGCTTGGTCTTCGCTCAATC+TGG + chr2.3:65649104-65649123 MS.gene00883:intron 50.0%
! GCTTGGTCTTCGCTCAATCT+GGG + chr2.3:65649105-65649124 MS.gene00883:intron 50.0%
! GGAAAGTGCAGAATGGCTTG+TGG + chr2.3:65650093-65650112 MS.gene00883:CDS 50.0%
! GGATCAGGGAAAGTGCAGAA+TGG + chr2.3:65650086-65650105 MS.gene00883:CDS 50.0%
AATGTTGCAGGCTGGGGATC+AGG + chr2.3:65650071-65650090 MS.gene00883:intron 55.0%
AGATTGCGGGCAGGTGCAAT+GGG + chr2.3:65650151-65650170 MS.gene00883:CDS 55.0%
ATGTTGCAGGCTGGGGATCA+GGG + chr2.3:65650072-65650091 MS.gene00883:intron 55.0%
CAATTGGGGCCTTTGGGCAT+TGG + chr2.3:65649939-65649958 MS.gene00883:intron 55.0%
GCCTGCACACTTGTAGTAGC+AGG + chr2.3:65648982-65649001 MS.gene00883:intron 55.0%
TTTATGATACCTGGCCGCCC+AGG - chr2.3:65648448-65648467 None:intergenic 55.0%
GAGATTGCGGGCAGGTGCAA+TGG + chr2.3:65650150-65650169 MS.gene00883:CDS 60.0%
TGCCCCCTACCAATGCCCAA+AGG - chr2.3:65649951-65649970 None:intergenic 60.0%
!! CTTGTGTTCTGGGACCTGGG+CGG + chr2.3:65648431-65648450 MS.gene00883:CDS 60.0%
!! GGCCTTTGGGCATTGGTAGG+GGG + chr2.3:65649946-65649965 MS.gene00883:intron 60.0%
!! GGGCCTTTGGGCATTGGTAG+GGG + chr2.3:65649945-65649964 MS.gene00883:intron 60.0%
!! GGGGCCTTTGGGCATTGGTA+GGG + chr2.3:65649944-65649963 MS.gene00883:intron 60.0%
!! TGGGGCCTTTGGGCATTGGT+AGG + chr2.3:65649943-65649962 MS.gene00883:intron 60.0%
!! TGGGCATTGGTAGGGGGCAC+AGG + chr2.3:65649952-65649971 MS.gene00883:intron 65.0%
CGGGCAGGTGCAATGGGTCC+AGG + chr2.3:65650157-65650176 MS.gene00883:CDS 70.0%
!! GTTCTGGGACCTGGGCGGCC+AGG + chr2.3:65648436-65648455 MS.gene00883:CDS 75.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 65648124 65650189 65648124 ID=MS.gene00883
chr2.3 mRNA 65648124 65650189 65648124 ID=MS.gene00883.t1;Parent=MS.gene00883
chr2.3 exon 65648124 65648216 65648124 ID=MS.gene00883.t1.exon1;Parent=MS.gene00883.t1
chr2.3 CDS 65648124 65648216 65648124 ID=cds.MS.gene00883.t1;Parent=MS.gene00883.t1
chr2.3 exon 65648317 65648457 65648317 ID=MS.gene00883.t1.exon2;Parent=MS.gene00883.t1
chr2.3 CDS 65648317 65648457 65648317 ID=cds.MS.gene00883.t1;Parent=MS.gene00883.t1
chr2.3 exon 65649106 65649214 65649106 ID=MS.gene00883.t1.exon3;Parent=MS.gene00883.t1
chr2.3 CDS 65649106 65649214 65649106 ID=cds.MS.gene00883.t1;Parent=MS.gene00883.t1
chr2.3 exon 65649361 65649422 65649361 ID=MS.gene00883.t1.exon4;Parent=MS.gene00883.t1
chr2.3 CDS 65649361 65649422 65649361 ID=cds.MS.gene00883.t1;Parent=MS.gene00883.t1
chr2.3 exon 65649556 65649659 65649556 ID=MS.gene00883.t1.exon5;Parent=MS.gene00883.t1
chr2.3 CDS 65649556 65649659 65649556 ID=cds.MS.gene00883.t1;Parent=MS.gene00883.t1
chr2.3 exon 65650081 65650189 65650081 ID=MS.gene00883.t1.exon6;Parent=MS.gene00883.t1
chr2.3 CDS 65650081 65650189 65650081 ID=cds.MS.gene00883.t1;Parent=MS.gene00883.t1
Gene Sequence

>MS.gene00883

ATGTTTTCGTTATTTTATGGACTTTGGCAGTTCATGTTCAGCAAGTTAGAGCTTCGTGTACTCATTTTAGGGATTGACAAGGCTGGCAAAACGGTAATATATCTTTCAATCCCTTATTTTTTAAGAAACTACTGAACTTTGTCTTGTGGCTCTGAGTTGTTTTATAATTGCTATATAATGAATAATTGTGTAGACTTTGCTTGAGAAGATAAAGTCGGTGTACACAAACGTAGAAGGTCTTCCTCCTGATCGAATTGTTCCAACTGTGGGATTGAATATTGGTCGAATTGAAGTGGCAAATAGAAAACTTGTGTTCTGGGACCTGGGCGGCCAGGTATCATAAATAGATAGTCAATACTTATCTTTGTAAATTCTATAATTATGATATTTGGATGAATTGTTAATTTGACTTGGCAAAGTAATTTTGTTCATTGACTCTAGCTTTATGGGCTGCTTGTCAAAATCATTTCATTCTACTTCAATGGCTAATATAATAAACATCTACATTACATAGTTCCCGAGGTCTTATTTTTTATGTTTCTTTATAAAGTTAAAATGCAATTAATTAATGAAAGAACAAGAAACTGTTTTTCTCTCTGAACAATTCTTTGGGAAGGCTACTCCACTAACCTAATTGGCTTAGTGTGTGTTTTTTTATTTTAAATTATAGGTTTGTTATTTTATCTTCAATCCATAAGAACTGTTACTTTATATATGCATACGAACTATGTTATTTGGACCATCTATTTCACCCTTTTTATGGCTGAAGTTTGAATTTACAAGAGATTTTGTGTTTACAAAATTAGTCCAATATGCACGAACATTTGATTCAGTACTTCATTTTTAACTGAAATATAAGCCTGCACACTTGTAGTAGCAGGAATAGAATGTATCATTTTGTGTACCTCTGCACATCTTGCTATCACTATGTCCCTTTTCATATTATAAGATAAAATGTTAATTTAATTTCCCCGCTTATCAGCTTGGTCTTCGCTCAATCTGGGAGAAATATTATGAAGAGGCACATGCTGTTGTATTTGTTATAGACGCATCTTGTCCGTCACGATTTGAAGATGCAAAGTCTGCACTTGGTTAGTGAGACTTGATTTTAGTATTTGTAAATAACTAAATTTATACTAATTTAAGGAGCTGGCTTGCAGTTGCAAGTTTGCAATAGTACTATATATGTTGAAATTAAACAGCACGGTGATAATTTAATAAATGATCTGTTTACCAGAAAAGGTGCTTCGACATGAGGATCTCAAAGGAGCCCCTCTTTTGATATTAGCAAACAAGCAAGTGAGTGTGACTATTCACTCCCTGTCCTATAAAATGTTCGGTTTCCTCGTTAGTTGTGATCCTATTTTTTTCGCCATCTTTGGTGTGTGTATCAACAGTGATGGCTGCATGCTGAACATTCTTCTTATTGCAGGATCTTCCTGAAGCAGTATCATCTGAAGAACTAGCTCGGTATCTAGATTTAAAGAAGCTGGACGAAAGAGTCTACATGTTTGAAGCCGTGTCAGCATATGATGGGTAAGTGAGAAGTTGTATAAAATTTTCAAATCTTAACCTGTGATGATCCATTACCATTTCATTTTCAATAAGGATCGAGATATCTGATGTAAGAAAAAAATAACCATTAAGGTACATAATGAAGTACTTACTGAATGAACTTTATTCTGATATGTATGTCACTTGAGGGAATTAGTTAGTTAGTCTGTTTGTTATTATTAATTAATGAGTGATAGGAAAAATAAGACATGTTGCCTAAAAATAATAAGTGGGGTTGAAAGGACCGCTAAACATTTGAGTCAATTGGGGCCTTTGGGCATTGGTAGGGGGCACAGGACCCTTGAAGTTCTGTGTTATTCTCCTGTAGTCTAGGGGATTTTTTTTCCTAATTCTTTGTATTACATTTCTAGTTCACATCACTTTATCCTTTGAAATGTTGCAGGCTGGGGATCAGGGAAAGTGCAGAATGGCTTGTGGAAGTGATGGAGAGAAGCAAGAGGACTGAAATGTTGAGATTGCGGGCAGGTGCAATGGGTCCAGGTCCTGCCTAG
Protein sequence

>MS.gene00883.t1

MFSLFYGLWQFMFSKLELRVLILGIDKAGKTTLLEKIKSVYTNVEGLPPDRIVPTVGLNIGRIEVANRKLVFWDLGGQLGLRSIWEKYYEEAHAVVFVIDASCPSRFEDAKSALEKVLRHEDLKGAPLLILANKQDLPEAVSSEELARYLDLKKLDERVYMFEAVSAYDGLGIRESAEWLVEVMERSKRTEMLRLRAGAMGPGPA