AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene20886


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20886.t1 MTR_1g086480 100.000 181 0 0 1 181 1 181 2.45e-135 375
MS.gene20886.t1 MTR_5g034130 99.448 181 1 0 1 181 1 181 6.88e-135 374
MS.gene20886.t1 MTR_5g034125 99.448 181 1 0 1 181 1 181 6.88e-135 374
MS.gene20886.t1 MTR_7g109960 98.895 181 2 0 1 181 1 181 2.18e-134 373
MS.gene20886.t1 MTR_6g005820 98.895 181 2 0 1 181 1 181 2.71e-134 373
MS.gene20886.t1 MTR_5g016540 86.667 180 24 0 1 180 1 180 4.00e-120 337
MS.gene20886.t1 MTR_4g128910 63.277 177 65 0 1 177 1 177 5.77e-84 246
MS.gene20886.t1 MTR_5g007810 61.582 177 68 0 1 177 1 177 7.27e-83 243
MS.gene20886.t1 MTR_4g077640 60.452 177 70 0 1 177 1 177 1.49e-80 238
MS.gene20886.t1 MTR_5g007820 55.495 182 79 1 1 180 1 182 1.39e-75 224
MS.gene20886.t1 MTR_1g076550 51.934 181 87 0 1 181 1 181 1.47e-67 204
MS.gene20886.t1 MTR_5g007840 42.723 213 77 2 1 180 1 201 4.40e-57 178
MS.gene20886.t1 MTR_8g077540 48.485 165 82 3 18 180 17 180 9.90e-50 159
MS.gene20886.t1 MTR_8g077540 48.485 165 82 3 18 180 43 206 1.47e-49 159
MS.gene20886.t1 MTR_2g022200 34.831 178 105 2 5 173 5 180 4.75e-37 127
MS.gene20886.t1 MTR_5g078090 34.659 176 112 2 1 173 1 176 3.95e-31 111
MS.gene20886.t1 MTR_5g015370 32.065 184 122 2 1 181 1 184 3.84e-30 108
MS.gene20886.t1 MTR_8g077540 51.020 98 46 2 18 114 17 113 1.77e-28 103
MS.gene20886.t1 MTR_4g026950 31.847 157 106 1 18 173 1 157 5.60e-26 97.8
MS.gene20886.t1 MTR_2g034640 31.638 177 105 2 15 177 18 192 1.07e-24 95.5
MS.gene20886.t1 MTR_7g112090 31.073 177 106 2 15 177 18 192 2.71e-24 94.4
MS.gene20886.t1 MTR_4g121860 31.638 177 105 2 15 177 18 192 8.95e-23 90.5
MS.gene20886.t1 MTR_1g062760 34.118 85 52 1 18 98 15 99 2.44e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20886.t1 AT1G10630 98.895 181 2 0 1 181 1 181 4.60e-134 372
MS.gene20886.t1 AT1G10630 98.895 181 2 0 1 181 1 181 4.60e-134 372
MS.gene20886.t1 AT5G14670 98.895 181 2 0 1 181 1 181 8.06e-134 372
MS.gene20886.t1 AT5G14670 98.895 181 2 0 1 181 1 181 8.06e-134 372
MS.gene20886.t1 AT3G62290 98.895 181 2 0 1 181 1 181 8.70e-134 372
MS.gene20886.t1 AT3G62290 98.895 181 2 0 1 181 1 181 8.70e-134 372
MS.gene20886.t1 AT3G62290 98.895 181 2 0 1 181 1 181 8.70e-134 372
MS.gene20886.t1 AT1G70490 98.895 181 2 0 1 181 1 181 1.12e-133 371
MS.gene20886.t1 AT1G70490 98.895 181 2 0 1 181 1 181 1.12e-133 371
MS.gene20886.t1 AT1G70490 98.895 181 2 0 1 181 1 181 1.12e-133 371
MS.gene20886.t1 AT1G70490 98.895 181 2 0 1 181 1 181 1.12e-133 371
MS.gene20886.t1 AT1G70490 98.895 181 2 0 1 181 1 181 1.12e-133 371
MS.gene20886.t1 AT1G70490 98.895 181 2 0 1 181 1 181 1.12e-133 371
MS.gene20886.t1 AT1G23490 98.895 181 2 0 1 181 1 181 1.12e-133 371
MS.gene20886.t1 AT1G70490 98.895 181 2 0 1 181 1 181 1.12e-133 371
MS.gene20886.t1 AT2G47170 98.895 181 2 0 1 181 1 181 1.17e-133 371
MS.gene20886.t1 AT2G47170 98.895 181 2 0 1 181 1 181 1.17e-133 371
MS.gene20886.t1 AT2G47170 98.895 181 2 0 1 181 1 181 1.17e-133 371
MS.gene20886.t1 AT5G14670 98.343 181 3 0 1 181 1 181 5.85e-133 370
MS.gene20886.t1 AT2G15310 67.403 181 59 0 1 181 1 181 3.02e-91 265
MS.gene20886.t1 AT2G24765 62.147 177 67 0 1 177 1 177 2.02e-84 247
MS.gene20886.t1 AT5G17060 58.659 179 74 0 1 179 1 179 1.95e-81 239
MS.gene20886.t1 AT5G17060 58.659 179 74 0 1 179 1 179 1.95e-81 239
MS.gene20886.t1 AT3G03120 59.887 177 71 0 1 177 1 177 1.21e-80 238
MS.gene20886.t1 AT3G22950 53.039 181 85 0 1 181 1 181 1.13e-70 212
MS.gene20886.t1 AT3G22950 53.039 181 85 0 1 181 1 181 1.13e-70 212
MS.gene20886.t1 AT2G24765 64.844 128 45 0 1 128 1 128 1.70e-60 184
MS.gene20886.t1 AT3G03120 62.308 130 49 0 1 130 1 130 1.30e-59 182
MS.gene20886.t1 AT1G02430 48.936 188 82 5 1 176 1 186 6.56e-57 177
MS.gene20886.t1 AT1G02440 45.699 186 91 4 1 176 1 186 2.48e-55 173
MS.gene20886.t1 AT2G18390 48.485 165 82 3 18 180 17 180 3.63e-49 157
MS.gene20886.t1 AT1G02430 47.205 161 75 4 1 153 1 159 3.40e-45 147
MS.gene20886.t1 AT5G52210 34.091 176 109 1 5 173 5 180 6.30e-36 124
MS.gene20886.t1 AT5G52210 34.091 176 109 1 5 173 5 180 6.30e-36 124
MS.gene20886.t1 AT3G49870 34.091 176 113 2 1 173 1 176 2.20e-32 115
MS.gene20886.t1 AT5G67560 33.742 163 107 1 12 173 14 176 2.58e-31 112
MS.gene20886.t1 AT5G37680 33.523 176 114 2 1 173 1 176 2.02e-30 109
MS.gene20886.t1 AT3G49870 33.121 157 104 1 18 173 1 157 5.13e-29 105
MS.gene20886.t1 AT3G49860 32.530 166 111 1 16 180 10 175 2.10e-28 104
MS.gene20886.t1 AT1G02440 33.117 154 67 3 1 153 1 119 3.74e-26 97.1
MS.gene20886.t1 AT1G09180 32.961 179 104 2 13 177 16 192 2.89e-25 97.1
MS.gene20886.t1 AT3G62560 31.638 177 105 2 15 177 18 192 1.36e-24 95.1
MS.gene20886.t1 AT5G37680 32.812 128 86 0 46 173 2 129 4.36e-24 92.4
MS.gene20886.t1 AT1G56330 31.638 177 105 2 15 177 18 192 5.17e-24 93.6
MS.gene20886.t1 AT4G02080 31.073 177 106 2 15 177 18 192 5.69e-24 93.6

Find 41 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGAGTCCTTGTGTATTT+TGG 0.168116 1.3:-61256621 None:intergenic
AAGTATACGCATCTCTTTCT+TGG 0.288003 1.3:-61255714 None:intergenic
TCAGCAGCATTCATAGCATT+TGG 0.364943 1.3:-61256969 None:intergenic
AGAACATCAGCTTCACTGTC+TGG 0.385102 1.3:+61255934 MS.gene20886:CDS
GAAAGAGATGCGTATACTTA+TGG 0.386945 1.3:+61255718 MS.gene20886:CDS
ATTCTTTATAAGCTCAAGCT+TGG 0.418391 1.3:+61255770 MS.gene20886:CDS
CAGAGCACATGTGCCACATC+TGG 0.447819 1.3:+61257138 MS.gene20886:CDS
TGTCTGGGATGTCGGAGGTC+AGG 0.455909 1.3:+61255950 MS.gene20886:CDS
ACTCTCTCCGTCAGCGTCAC+TGG 0.468160 1.3:+61257015 MS.gene20886:CDS
CATTCACGAAGCTGTTTAGC+CGG 0.473064 1.3:+61255684 MS.gene20886:CDS
AGCTTCACTGTCTGGGATGT+CGG 0.473789 1.3:+61255942 MS.gene20886:CDS
CAGATGTGGCACATGTGCTC+TGG 0.476593 1.3:-61257137 None:intergenic
AAGCTTGAGCTTATAAAGAA+TGG 0.497488 1.3:-61255768 None:intergenic
GTAAGATACATACCGATAGT+AGG 0.498973 1.3:-61255812 None:intergenic
CTCAAACAACATTGCAAACA+AGG 0.503713 1.3:+61257191 MS.gene20886:CDS
AAGCTAGAGATGAGCTGCAC+AGG 0.506543 1.3:+61256680 MS.gene20886:CDS
TCTCTTTCTTGGCAAATAGC+CGG 0.506749 1.3:-61255703 None:intergenic
TTGTGGTTGATAGCAATGAC+AGG 0.519491 1.3:+61256644 MS.gene20886:CDS
GAACATCAGCTTCACTGTCT+GGG 0.522077 1.3:+61255935 MS.gene20886:CDS
ATGGTAGGTCTCGATGCAGC+TGG 0.562008 1.3:+61255737 MS.gene20886:CDS
GACTTTATGAAGGACTTGAC+TGG 0.563819 1.3:+61257166 MS.gene20886:CDS
ATAAAGTCCTTCACCAGATG+TGG 0.566017 1.3:-61257151 None:intergenic
TCTGGTGAAGGACTTTATGA+AGG 0.585343 1.3:+61257156 MS.gene20886:CDS
AGTAATGTCTCCACAGAGGA+CGG 0.585615 1.3:-61256597 None:intergenic
CCCTGTAGATCCGTCCTCTG+TGG 0.597050 1.3:+61256587 MS.gene20886:intron
GTTACAACCATTCCTACTAT+CGG 0.597928 1.3:+61255800 MS.gene20886:CDS
ATACATACCGATAGTAGGAA+TGG 0.605406 1.3:-61255807 None:intergenic
CTTGAGCTTATAAAGAATGG+TGG 0.605632 1.3:-61255765 None:intergenic
GCTGAGATAACTGATAAGCT+TGG 0.619937 1.3:+61256987 MS.gene20886:CDS
TTCACTGTCTGGGATGTCGG+AGG 0.622588 1.3:+61255945 MS.gene20886:CDS
GAGATGCGTATACTTATGGT+AGG 0.623901 1.3:+61255722 MS.gene20886:CDS
TAGTTTACCAGTGACGCTGA+CGG 0.637651 1.3:-61257022 None:intergenic
ACATGTGCCACATCTGGTGA+AGG 0.638525 1.3:+61257144 MS.gene20886:CDS
GGATGTCGGAGGTCAGGACA+AGG 0.643668 1.3:+61255956 MS.gene20886:CDS
CATTACTTCCAAAATACACA+AGG 0.651419 1.3:+61256613 MS.gene20886:CDS
TGTGGTTGATAGCAATGACA+GGG 0.656079 1.3:+61256645 MS.gene20886:CDS
AGGGTTCAATGTGGAAACAG+TGG 0.658334 1.3:+61255905 MS.gene20886:intron
CATCTCTAGCTTCAACAACA+CGG 0.660245 1.3:-61256669 None:intergenic
TGTATATGTAGGGTTCAATG+TGG 0.687704 1.3:+61255896 MS.gene20886:intron
GCTGCACAGGATGTTGAATG+AGG 0.712176 1.3:+61256693 MS.gene20886:CDS
TGGAAGTAATGTCTCCACAG+AGG 0.750469 1.3:-61256601 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGATGTACTATAATCTTT+CGG + chr1.3:61256465-61256484 MS.gene20886:intron 20.0%
!! TCACTTATTCAACATATATT+TGG - chr1.3:61256780-61256799 None:intergenic 20.0%
!!! AATGAAAGGTTGATTATTTA+TGG + chr1.3:61256743-61256762 MS.gene20886:intron 20.0%
!!! ACATATATTTTTCACATTTG+TGG + chr1.3:61256223-61256242 MS.gene20886:intron 20.0%
!!! ATTAGAACTGAAATTTTGAA+AGG - chr1.3:61256124-61256143 None:intergenic 20.0%
!!! CATATATTTTTCACATTTGT+GGG + chr1.3:61256224-61256243 MS.gene20886:intron 20.0%
! AAAAAAAAATCACTGCACAT+TGG - chr1.3:61256261-61256280 None:intergenic 25.0%
! AATAAGTGAAAATGAAAGGT+TGG + chr1.3:61256791-61256810 MS.gene20886:intron 25.0%
! AATGGATCATTGTATATGTA+GGG + chr1.3:61255886-61255905 MS.gene20886:intron 25.0%
! ATGATGTACTATAATCTTTC+GGG + chr1.3:61256466-61256485 MS.gene20886:intron 25.0%
! ATTATGGCTCATTGTATTAA+TGG + chr1.3:61255868-61255887 MS.gene20886:intron 25.0%
! ATTTCATTGATGCTATAACA+TGG + chr1.3:61256045-61256064 MS.gene20886:intron 25.0%
! GTATCTTACTATGTTTGTAT+TGG + chr1.3:61255826-61255845 MS.gene20886:intron 25.0%
! GTTGAATAAGTGAAAATGAA+AGG + chr1.3:61256787-61256806 MS.gene20886:intron 25.0%
! TCACTCATTCAACATATATT+TGG - chr1.3:61256838-61256857 None:intergenic 25.0%
! TTATAGTACATCATAACAAG+AGG - chr1.3:61256460-61256479 None:intergenic 25.0%
! TTTGGATGCTTATAATACTT+TGG + chr1.3:61256892-61256911 MS.gene20886:intron 25.0%
!! AATGAAAGGTTGGTTATTTA+TGG + chr1.3:61256801-61256820 MS.gene20886:intron 25.0%
!! TAATGGATCATTGTATATGT+AGG + chr1.3:61255885-61255904 MS.gene20886:intron 25.0%
!! TATAGTTGTAATCTTTTCCA+TGG + chr1.3:61256174-61256193 MS.gene20886:intron 25.0%
!!! AAATCTTGTTTTACTGAACA+TGG + chr1.3:61256495-61256514 MS.gene20886:intron 25.0%
!!! AACTAATGCCTTTCTTTTTT+GGG + chr1.3:61257269-61257288 MS.gene20886:intron 25.0%
!!! TAGATCTTTTTTACTCAACA+TGG + chr1.3:61256542-61256561 MS.gene20886:intron 25.0%
AAGCTTGAGCTTATAAAGAA+TGG - chr1.3:61255771-61255790 None:intergenic 30.0%
AATGAGTGAAAATGAAAGGT+TGG + chr1.3:61256733-61256752 MS.gene20886:intron 30.0%
ATTCTTTATAAGCTCAAGCT+TGG + chr1.3:61255770-61255789 MS.gene20886:CDS 30.0%
CATAATCATGATCACAGAAA+TGG - chr1.3:61255854-61255873 None:intergenic 30.0%
CATTACTTCCAAAATACACA+AGG + chr1.3:61256613-61256632 MS.gene20886:CDS 30.0%
CATTTCTGTGATCATGATTA+TGG + chr1.3:61255852-61255871 MS.gene20886:intron 30.0%
GTTGAATGAGTGAAAATGAA+AGG + chr1.3:61256845-61256864 MS.gene20886:intron 30.0%
TGATGCTATAACATGGTAAT+TGG + chr1.3:61256052-61256071 MS.gene20886:intron 30.0%
! AAATGAGTCCTTGTGTATTT+TGG - chr1.3:61256624-61256643 None:intergenic 30.0%
! GAAAGGTTGGTTATTTATGT+GGG + chr1.3:61256862-61256881 MS.gene20886:intron 30.0%
! TGAAAGGTTGGTTATTTATG+TGG + chr1.3:61256803-61256822 MS.gene20886:intron 30.0%
! TTTTCTCATTGCATCTTCTA+CGG + chr1.3:61255983-61256002 MS.gene20886:intron 30.0%
!! CAAAAAAGAAAGGCATTAGT+TGG - chr1.3:61257270-61257289 None:intergenic 30.0%
!! TAAGAGTGTTGAATTCAAGA+AGG - chr1.3:61256334-61256353 None:intergenic 30.0%
!!! CAACTAATGCCTTTCTTTTT+TGG + chr1.3:61257268-61257287 MS.gene20886:intron 30.0%
AAGTATACGCATCTCTTTCT+TGG - chr1.3:61255717-61255736 None:intergenic 35.0%
AATCACCTACTCTAACTTTC+TGG + chr1.3:61256380-61256399 MS.gene20886:intron 35.0%
AGGTCAAATGGAAGATAACT+TGG - chr1.3:61256440-61256459 None:intergenic 35.0%
ATACATACCGATAGTAGGAA+TGG - chr1.3:61255810-61255829 None:intergenic 35.0%
CACATCTACATCTTAATCCA+TGG - chr1.3:61256194-61256213 None:intergenic 35.0%
CATCATAACAAGAGGTCAAA+TGG - chr1.3:61256452-61256471 None:intergenic 35.0%
CTCAAACAACATTGCAAACA+AGG + chr1.3:61257191-61257210 MS.gene20886:CDS 35.0%
CTTGAGCTTATAAAGAATGG+TGG - chr1.3:61255768-61255787 None:intergenic 35.0%
GAAAGAGATGCGTATACTTA+TGG + chr1.3:61255718-61255737 MS.gene20886:CDS 35.0%
GATGCTTATAATACTTTGGC+AGG + chr1.3:61256896-61256915 MS.gene20886:intron 35.0%
GCTGAATGAGTGAAAATGAA+AGG + chr1.3:61256729-61256748 MS.gene20886:intron 35.0%
GGTCAAATGGAAGATAACTT+GGG - chr1.3:61256439-61256458 None:intergenic 35.0%
GTAAGATACATACCGATAGT+AGG - chr1.3:61255815-61255834 None:intergenic 35.0%
GTTACAACCATTCCTACTAT+CGG + chr1.3:61255800-61255819 MS.gene20886:CDS 35.0%
TATCTCCAGAAAGTTAGAGT+AGG - chr1.3:61256388-61256407 None:intergenic 35.0%
TCACAAACATACTTGCTCAA+GGG - chr1.3:61256087-61256106 None:intergenic 35.0%
TGTATATGTAGGGTTCAATG+TGG + chr1.3:61255896-61255915 MS.gene20886:intron 35.0%
TTCACAAACATACTTGCTCA+AGG - chr1.3:61256088-61256107 None:intergenic 35.0%
! ATTTATGTGGGTCGTCATTT+TGG + chr1.3:61256874-61256893 MS.gene20886:intron 35.0%
!! TACACAAGGACTCATTTTTG+TGG + chr1.3:61256627-61256646 MS.gene20886:CDS 35.0%
!!! TAATGCCTTTCTTTTTTGGG+CGG + chr1.3:61257272-61257291 MS.gene20886:intron 35.0%
AATCACCGCCCAAAAAAGAA+AGG - chr1.3:61257280-61257299 None:intergenic 40.0%
ATAAAGTCCTTCACCAGATG+TGG - chr1.3:61257154-61257173 None:intergenic 40.0%
ATGACGGTGAGAATGAGTAA+TGG - chr1.3:61257095-61257114 None:intergenic 40.0%
ATTACTCATTCTCACCGTCA+TGG + chr1.3:61257094-61257113 MS.gene20886:intron 40.0%
GAAGATAACTTGGGTCAAAG+GGG - chr1.3:61256430-61256449 None:intergenic 40.0%
GACTTTATGAAGGACTTGAC+TGG + chr1.3:61257166-61257185 MS.gene20886:CDS 40.0%
GAGATGCGTATACTTATGGT+AGG + chr1.3:61255722-61255741 MS.gene20886:CDS 40.0%
GCTGAGATAACTGATAAGCT+TGG + chr1.3:61256987-61257006 MS.gene20886:CDS 40.0%
GGAAGATAACTTGGGTCAAA+GGG - chr1.3:61256431-61256450 None:intergenic 40.0%
GTTAGAGTAGGTGATTGAGT+AGG - chr1.3:61256376-61256395 None:intergenic 40.0%
TCAGCAGCATTCATAGCATT+TGG - chr1.3:61256972-61256991 None:intergenic 40.0%
TCTCTTTCTTGGCAAATAGC+CGG - chr1.3:61255706-61255725 None:intergenic 40.0%
TCTGGTGAAGGACTTTATGA+AGG + chr1.3:61257156-61257175 MS.gene20886:CDS 40.0%
TGGAAGATAACTTGGGTCAA+AGG - chr1.3:61256432-61256451 None:intergenic 40.0%
! CATCTCTAGCTTCAACAACA+CGG - chr1.3:61256672-61256691 None:intergenic 40.0%
! GTAATGGAAGCAGGAAGATA+AGG - chr1.3:61257079-61257098 None:intergenic 40.0%
! TGAGAATGAGTAATGGAAGC+AGG - chr1.3:61257088-61257107 None:intergenic 40.0%
!! TGTGGTTGATAGCAATGACA+GGG + chr1.3:61256645-61256664 MS.gene20886:CDS 40.0%
!! TTGTGGTTGATAGCAATGAC+AGG + chr1.3:61256644-61256663 MS.gene20886:CDS 40.0%
AGAACATCAGCTTCACTGTC+TGG + chr1.3:61255934-61255953 MS.gene20886:CDS 45.0%
AGGGTTCAATGTGGAAACAG+TGG + chr1.3:61255905-61255924 MS.gene20886:intron 45.0%
AGTAATGTCTCCACAGAGGA+CGG - chr1.3:61256600-61256619 None:intergenic 45.0%
CATTCACGAAGCTGTTTAGC+CGG + chr1.3:61255684-61255703 MS.gene20886:CDS 45.0%
CTGCATGTACAGATCCATGA+CGG - chr1.3:61257111-61257130 None:intergenic 45.0%
GAACATCAGCTTCACTGTCT+GGG + chr1.3:61255935-61255954 MS.gene20886:CDS 45.0%
TAGTTTACCAGTGACGCTGA+CGG - chr1.3:61257025-61257044 None:intergenic 45.0%
TGGAAGCAGGAAGATAAGGA+AGG - chr1.3:61257075-61257094 None:intergenic 45.0%
TGGAAGTAATGTCTCCACAG+AGG - chr1.3:61256604-61256623 None:intergenic 45.0%
AAGCTAGAGATGAGCTGCAC+AGG + chr1.3:61256680-61256699 MS.gene20886:CDS 50.0%
ACATGTGCCACATCTGGTGA+AGG + chr1.3:61257144-61257163 MS.gene20886:CDS 50.0%
CGTCATGGATCTGTACATGC+AGG + chr1.3:61257109-61257128 MS.gene20886:intron 50.0%
GCTGCACAGGATGTTGAATG+AGG + chr1.3:61256693-61256712 MS.gene20886:CDS 50.0%
! AGCTTCACTGTCTGGGATGT+CGG + chr1.3:61255942-61255961 MS.gene20886:CDS 50.0%
ATGGTAGGTCTCGATGCAGC+TGG + chr1.3:61255737-61255756 MS.gene20886:CDS 55.0%
CAGAGCACATGTGCCACATC+TGG + chr1.3:61257138-61257157 MS.gene20886:CDS 55.0%
CAGATGTGGCACATGTGCTC+TGG - chr1.3:61257140-61257159 None:intergenic 55.0%
CCACAGAGGACGGATCTACA+GGG - chr1.3:61256590-61256609 None:intergenic 55.0%
TCCACAGAGGACGGATCTAC+AGG - chr1.3:61256591-61256610 None:intergenic 55.0%
! TTCACTGTCTGGGATGTCGG+AGG + chr1.3:61255945-61255964 MS.gene20886:CDS 55.0%
!! TTTGGGCGGTGATTTGCTGC+AGG + chr1.3:61257286-61257305 MS.gene20886:intron 55.0%
ACTCTCTCCGTCAGCGTCAC+TGG + chr1.3:61257015-61257034 MS.gene20886:CDS 60.0%
CCCTGTAGATCCGTCCTCTG+TGG + chr1.3:61256587-61256606 MS.gene20886:intron 60.0%
GGATGTCGGAGGTCAGGACA+AGG + chr1.3:61255956-61255975 MS.gene20886:CDS 60.0%
! TGTCTGGGATGTCGGAGGTC+AGG + chr1.3:61255950-61255969 MS.gene20886:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 61255674 61257313 61255674 ID=MS.gene20886
chr1.3 mRNA 61255674 61257313 61255674 ID=MS.gene20886.t1;Parent=MS.gene20886
chr1.3 exon 61255674 61255821 61255674 ID=MS.gene20886.t1.exon1;Parent=MS.gene20886.t1
chr1.3 CDS 61255674 61255821 61255674 ID=cds.MS.gene20886.t1;Parent=MS.gene20886.t1
chr1.3 exon 61255907 61255977 61255907 ID=MS.gene20886.t1.exon2;Parent=MS.gene20886.t1
chr1.3 CDS 61255907 61255977 61255907 ID=cds.MS.gene20886.t1;Parent=MS.gene20886.t1
chr1.3 exon 61256595 61256714 61256595 ID=MS.gene20886.t1.exon3;Parent=MS.gene20886.t1
chr1.3 CDS 61256595 61256714 61256595 ID=cds.MS.gene20886.t1;Parent=MS.gene20886.t1
chr1.3 exon 61256918 61257036 61256918 ID=MS.gene20886.t1.exon4;Parent=MS.gene20886.t1
chr1.3 CDS 61256918 61257036 61256918 ID=cds.MS.gene20886.t1;Parent=MS.gene20886.t1
chr1.3 exon 61257131 61257212 61257131 ID=MS.gene20886.t1.exon5;Parent=MS.gene20886.t1
chr1.3 CDS 61257131 61257212 61257131 ID=cds.MS.gene20886.t1;Parent=MS.gene20886.t1
chr1.3 exon 61257308 61257313 61257308 ID=MS.gene20886.t1.exon6;Parent=MS.gene20886.t1
chr1.3 CDS 61257308 61257313 61257308 ID=cds.MS.gene20886.t1;Parent=MS.gene20886.t1
Gene Sequence

>MS.gene20886

ATGGGATTGTCATTCACGAAGCTGTTTAGCCGGCTATTTGCCAAGAAAGAGATGCGTATACTTATGGTAGGTCTCGATGCAGCTGGTAAGACCACCATTCTTTATAAGCTCAAGCTTGGAGAGATCGTTACAACCATTCCTACTATCGGTATGTATCTTACTATGTTTGTATTGGATCCATTTCTGTGATCATGATTATGGCTCATTGTATTAATGGATCATTGTATATGTAGGGTTCAATGTGGAAACAGTGGAATATAAGAACATCAGCTTCACTGTCTGGGATGTCGGAGGTCAGGACAAGGTAATTTTTCTCATTGCATCTTCTACGGCGTGCTTATTTATGTTTTTTTAGTGCAATGTACATAATGATTTCATTGATGCTATAACATGGTAATTGGCTGAAACTTCCCTTGAGCAAGTATGTTTGTGAATGTGATGTGATTTCCTTTCAAAATTTCAGTTCTAATAAATCACTGAATGTCAATTTGATGCATTCGTATAGTTGTAATCTTTTCCATGGATTAAGATGTAGATGTGATTCGAAATACATATATTTTTCACATTTGTGGGTCGTTAATTGTCCAATGTGCAGTGATTTTTTTTTTTTTTTTTTGCAAATTGTATTGTGATGCATGTCTTGTTATTGTCGTTTTGCCTTCTTGAATTCAACACTCTTAATGTAATTTGTATGATCAACCTACTCAATCACCTACTCTAACTTTCTGGAGATAGTGTATGATAAGTTTTTAGCCCCTTTGACCCAAGTTATCTTCCATTTGACCTCTTGTTATGATGTACTATAATCTTTCGGGTATATTAAATCTTGTTTTACTGAACATGGCAGTGACAACTACATGAAGTATATTAGATCTTTTTTACTCAACATGGCAGTGACAATTGACATGTTTTTCCCTGTAGATCCGTCCTCTGTGGAGACATTACTTCCAAAATACACAAGGACTCATTTTTGTGGTTGATAGCAATGACAGGGACCGTGTTGTTGAAGCTAGAGATGAGCTGCACAGGATGTTGAATGAGGTAAATTAATATATGCTGAATGAGTGAAAATGAAAGGTTGATTATTTATGGTTATTTGATTTCCAAATATATGTTGAATAAGTGAAAATGAAAGGTTGGTTATTTATGGTTATTTGATTTCCAAATATATGTTGAATGAGTGAAAATGAAAGGTTGGTTATTTATGTGGGTCGTCATTTTGGATGCTTATAATACTTTGGCAGGATGAATTGAGAGATGCAGTGCTTCTAGTTTTTGCTAACAAGCAAGATCTTCCAAATGCTATGAATGCTGCTGAGATAACTGATAAGCTTGGTCTTCACTCTCTCCGTCAGCGTCACTGGTAAACTAAAATTTTTGCTCGCAACATTTTTTTCTCCTTCCTTATCTTCCTGCTTCCATTACTCATTCTCACCGTCATGGATCTGTACATGCAGGTACATCCAGAGCACATGTGCCACATCTGGTGAAGGACTTTATGAAGGACTTGACTGGCTCTCAAACAACATTGCAAACAAGGTTAATACTGAATAACTTTTCTGTCTAACTTGTCAATTCAATTTACATGACAATCCAACTAATGCCTTTCTTTTTTGGGCGGTGATTTGCTGCAGGCATAG

Protein sequence

>MS.gene20886.t1

MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA