Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027646.t1 | RZB99279.1 | 100 | 181 | 0 | 0 | 1 | 181 | 17 | 197 | 3.60E-98 | 367.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027646.t1 | P51823 | 99.4 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 2.6e-100 | 365.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027646.t1 | A0A1U7V2M3 | 100.0 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 2.6e-98 | 367.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027646.t1 | MTR_5g034130 | 100.000 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 2.62e-135 | 375 |
| MS.gene027646.t1 | MTR_5g034125 | 100.000 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 2.62e-135 | 375 |
| MS.gene027646.t1 | MTR_1g086480 | 99.448 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 6.88e-135 | 374 |
| MS.gene027646.t1 | MTR_6g005820 | 99.448 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 9.56e-135 | 374 |
| MS.gene027646.t1 | MTR_7g109960 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 6.38e-134 | 372 |
| MS.gene027646.t1 | MTR_5g016540 | 87.222 | 180 | 23 | 0 | 1 | 180 | 1 | 180 | 1.47e-120 | 338 |
| MS.gene027646.t1 | MTR_4g128910 | 63.277 | 177 | 65 | 0 | 1 | 177 | 1 | 177 | 3.37e-84 | 246 |
| MS.gene027646.t1 | MTR_5g007810 | 61.582 | 177 | 68 | 0 | 1 | 177 | 1 | 177 | 4.35e-83 | 244 |
| MS.gene027646.t1 | MTR_4g077640 | 60.452 | 177 | 70 | 0 | 1 | 177 | 1 | 177 | 2.31e-80 | 237 |
| MS.gene027646.t1 | MTR_5g007820 | 55.495 | 182 | 79 | 1 | 1 | 180 | 1 | 182 | 2.90e-75 | 224 |
| MS.gene027646.t1 | MTR_1g076550 | 51.934 | 181 | 87 | 0 | 1 | 181 | 1 | 181 | 1.18e-67 | 204 |
| MS.gene027646.t1 | MTR_5g007840 | 42.723 | 213 | 77 | 2 | 1 | 180 | 1 | 201 | 8.01e-57 | 177 |
| MS.gene027646.t1 | MTR_8g077540 | 48.485 | 165 | 82 | 3 | 18 | 180 | 17 | 180 | 1.01e-49 | 159 |
| MS.gene027646.t1 | MTR_8g077540 | 48.485 | 165 | 82 | 3 | 18 | 180 | 43 | 206 | 1.51e-49 | 159 |
| MS.gene027646.t1 | MTR_2g022200 | 34.831 | 178 | 105 | 2 | 5 | 173 | 5 | 180 | 4.22e-37 | 127 |
| MS.gene027646.t1 | MTR_5g078090 | 34.091 | 176 | 113 | 2 | 1 | 173 | 1 | 176 | 1.05e-30 | 110 |
| MS.gene027646.t1 | MTR_5g015370 | 32.065 | 184 | 122 | 2 | 1 | 181 | 1 | 184 | 5.42e-30 | 108 |
| MS.gene027646.t1 | MTR_8g077540 | 51.020 | 98 | 46 | 2 | 18 | 114 | 17 | 113 | 1.85e-28 | 103 |
| MS.gene027646.t1 | MTR_4g026950 | 31.847 | 157 | 106 | 1 | 18 | 173 | 1 | 157 | 5.08e-26 | 97.8 |
| MS.gene027646.t1 | MTR_2g034640 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 1.01e-24 | 95.5 |
| MS.gene027646.t1 | MTR_7g112090 | 31.073 | 177 | 106 | 2 | 15 | 177 | 18 | 192 | 2.77e-24 | 94.4 |
| MS.gene027646.t1 | MTR_4g121860 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 7.47e-23 | 90.5 |
| MS.gene027646.t1 | MTR_1g062760 | 34.118 | 85 | 52 | 1 | 18 | 98 | 15 | 99 | 2.54e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027646.t1 | AT5G14670 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 1.28e-133 | 371 |
| MS.gene027646.t1 | AT5G14670 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 1.28e-133 | 371 |
| MS.gene027646.t1 | AT1G10630 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 1.56e-133 | 371 |
| MS.gene027646.t1 | AT1G10630 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 1.56e-133 | 371 |
| MS.gene027646.t1 | AT3G62290 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.34e-133 | 370 |
| MS.gene027646.t1 | AT3G62290 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.34e-133 | 370 |
| MS.gene027646.t1 | AT3G62290 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.34e-133 | 370 |
| MS.gene027646.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene027646.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene027646.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene027646.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene027646.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene027646.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene027646.t1 | AT1G23490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene027646.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene027646.t1 | AT2G47170 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 3.91e-133 | 370 |
| MS.gene027646.t1 | AT2G47170 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 3.91e-133 | 370 |
| MS.gene027646.t1 | AT2G47170 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 3.91e-133 | 370 |
| MS.gene027646.t1 | AT5G14670 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 1.05e-132 | 369 |
| MS.gene027646.t1 | AT2G15310 | 67.403 | 181 | 59 | 0 | 1 | 181 | 1 | 181 | 2.79e-91 | 265 |
| MS.gene027646.t1 | AT2G24765 | 62.147 | 177 | 67 | 0 | 1 | 177 | 1 | 177 | 1.42e-84 | 247 |
| MS.gene027646.t1 | AT5G17060 | 58.659 | 179 | 74 | 0 | 1 | 179 | 1 | 179 | 3.19e-81 | 239 |
| MS.gene027646.t1 | AT5G17060 | 58.659 | 179 | 74 | 0 | 1 | 179 | 1 | 179 | 3.19e-81 | 239 |
| MS.gene027646.t1 | AT3G03120 | 60.452 | 177 | 70 | 0 | 1 | 177 | 1 | 177 | 4.48e-81 | 239 |
| MS.gene027646.t1 | AT3G22950 | 53.039 | 181 | 85 | 0 | 1 | 181 | 1 | 181 | 1.15e-70 | 212 |
| MS.gene027646.t1 | AT3G22950 | 53.039 | 181 | 85 | 0 | 1 | 181 | 1 | 181 | 1.15e-70 | 212 |
| MS.gene027646.t1 | AT2G24765 | 64.844 | 128 | 45 | 0 | 1 | 128 | 1 | 128 | 1.19e-60 | 185 |
| MS.gene027646.t1 | AT3G03120 | 63.077 | 130 | 48 | 0 | 1 | 130 | 1 | 130 | 4.95e-60 | 183 |
| MS.gene027646.t1 | AT1G02430 | 48.936 | 188 | 82 | 5 | 1 | 176 | 1 | 186 | 9.40e-57 | 177 |
| MS.gene027646.t1 | AT1G02440 | 46.237 | 186 | 90 | 4 | 1 | 176 | 1 | 186 | 7.38e-56 | 175 |
| MS.gene027646.t1 | AT2G18390 | 48.485 | 165 | 82 | 3 | 18 | 180 | 17 | 180 | 3.51e-49 | 157 |
| MS.gene027646.t1 | AT1G02430 | 47.205 | 161 | 75 | 4 | 1 | 153 | 1 | 159 | 5.08e-45 | 146 |
| MS.gene027646.t1 | AT5G52210 | 34.091 | 176 | 109 | 1 | 5 | 173 | 5 | 180 | 6.65e-36 | 124 |
| MS.gene027646.t1 | AT5G52210 | 34.091 | 176 | 109 | 1 | 5 | 173 | 5 | 180 | 6.65e-36 | 124 |
| MS.gene027646.t1 | AT3G49870 | 34.091 | 176 | 113 | 2 | 1 | 173 | 1 | 176 | 3.21e-32 | 114 |
| MS.gene027646.t1 | AT5G67560 | 33.742 | 163 | 107 | 1 | 12 | 173 | 14 | 176 | 2.52e-31 | 112 |
| MS.gene027646.t1 | AT5G37680 | 33.742 | 163 | 107 | 1 | 12 | 173 | 14 | 176 | 4.83e-30 | 108 |
| MS.gene027646.t1 | AT3G49870 | 33.121 | 157 | 104 | 1 | 18 | 173 | 1 | 157 | 5.25e-29 | 105 |
| MS.gene027646.t1 | AT3G49860 | 32.530 | 166 | 111 | 1 | 16 | 180 | 10 | 175 | 2.42e-28 | 104 |
| MS.gene027646.t1 | AT1G02440 | 33.766 | 154 | 66 | 3 | 1 | 153 | 1 | 119 | 1.15e-26 | 98.6 |
| MS.gene027646.t1 | AT1G09180 | 32.961 | 179 | 104 | 2 | 13 | 177 | 16 | 192 | 2.74e-25 | 97.1 |
| MS.gene027646.t1 | AT3G62560 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 1.22e-24 | 95.1 |
| MS.gene027646.t1 | AT5G37680 | 32.812 | 128 | 86 | 0 | 46 | 173 | 2 | 129 | 4.55e-24 | 92.0 |
| MS.gene027646.t1 | AT1G56330 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 4.74e-24 | 93.6 |
| MS.gene027646.t1 | AT4G02080 | 31.073 | 177 | 106 | 2 | 15 | 177 | 18 | 192 | 5.17e-24 | 93.6 |
Find 52 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAACCGATTATTACCTTAT+TGG | 0.233815 | 5.2:-24082526 | None:intergenic |
| ACCCAACTTGTCAGTAATTT+CGG | 0.318172 | 5.2:-24082321 | None:intergenic |
| CAGAGCACCTGTGCAACTTC+CGG | 0.333413 | 5.2:+24082459 | MS.gene027646:CDS |
| ATATAAGACCCTGAGTGTTC+TGG | 0.338828 | 5.2:-24081794 | None:intergenic |
| TTCCAACAACATAGCCAATA+AGG | 0.351695 | 5.2:+24082512 | MS.gene027646:CDS |
| TACCTTATTGGCTATGTTGT+TGG | 0.353173 | 5.2:-24082514 | None:intergenic |
| GAACATTAGCTTCACCGTTT+GGG | 0.382427 | 5.2:+24081601 | MS.gene027646:CDS |
| TCGGCAGCATTCATTGCATT+TGG | 0.390949 | 5.2:-24082302 | None:intergenic |
| AGAACATTAGCTTCACCGTT+TGG | 0.392481 | 5.2:+24081600 | MS.gene027646:CDS |
| AGAGCACCTGTGCAACTTCC+GGG | 0.403911 | 5.2:+24082460 | MS.gene027646:CDS |
| CGGAAGTTGCACAGGTGCTC+TGG | 0.408972 | 5.2:-24082458 | None:intergenic |
| AGCTTCACCGTTTGGGATGT+TGG | 0.428276 | 5.2:+24081608 | MS.gene027646:CDS |
| CAGTCGGTTATTCGCGAAGA+AGG | 0.434991 | 5.2:+24080395 | MS.gene027646:CDS |
| ATCCTTTACAAGCTCAAGCT+TGG | 0.444376 | 5.2:+24080465 | MS.gene027646:CDS |
| GGAGGGTCTCTATGAAGGTT+TGG | 0.453032 | 5.2:+24082482 | MS.gene027646:CDS |
| ACCTGTGCAACTTCCGGGGA+GGG | 0.478989 | 5.2:+24082465 | MS.gene027646:CDS |
| ATTTGGAAGATCTTGTTTGT+TGG | 0.480982 | 5.2:-24082285 | None:intergenic |
| CATCCTATGTAACTCATCTC+TGG | 0.482324 | 5.2:-24081856 | None:intergenic |
| TCCGGGGAGGGTCTCTATGA+AGG | 0.482624 | 5.2:+24082477 | MS.gene027646:CDS |
| ACCCTCCCCGGAAGTTGCAC+AGG | 0.491238 | 5.2:-24082466 | None:intergenic |
| TGCCGAAATTACTGACAAGT+TGG | 0.496529 | 5.2:+24082319 | MS.gene027646:CDS |
| GTCTCTATGAAGGTTTGGAC+TGG | 0.504629 | 5.2:+24082487 | MS.gene027646:CDS |
| TTGTCGTAGACAGCAATGAC+AGG | 0.512038 | 5.2:+24081817 | MS.gene027646:CDS |
| CTCCAAGCTTGAGCTTGTAA+AGG | 0.521573 | 5.2:-24080467 | None:intergenic |
| ACTCTCTGAGACAGCGCCAC+TGG | 0.541563 | 5.2:+24082348 | MS.gene027646:CDS |
| ACCTTCATAGAGACCCTCCC+CGG | 0.544592 | 5.2:-24082478 | None:intergenic |
| ATGGTTGGTCTCGATGCGGC+TGG | 0.544748 | 5.2:+24080432 | MS.gene027646:CDS |
| TTCACCGTTTGGGATGTTGG+AGG | 0.546724 | 5.2:+24081611 | MS.gene027646:CDS |
| GCCGAAATTACTGACAAGTT+GGG | 0.549280 | 5.2:+24082320 | MS.gene027646:CDS |
| CATTCACAAAGCTGTTCAGT+CGG | 0.551165 | 5.2:+24080379 | MS.gene027646:CDS |
| GAAGGAAATGAGAATTCTGA+TGG | 0.552787 | 5.2:+24080413 | MS.gene027646:CDS |
| GAAATGAGAATTCTGATGGT+TGG | 0.557555 | 5.2:+24080417 | MS.gene027646:CDS |
| CTTGAGCTTGTAAAGGATGG+TGG | 0.557726 | 5.2:-24080460 | None:intergenic |
| CTTACCAATGGTAGGGATGG+TGG | 0.573307 | 5.2:-24080499 | None:intergenic |
| GTCACCACCATCCCTACCAT+TGG | 0.577538 | 5.2:+24080495 | MS.gene027646:CDS |
| AAGCCAGAGATGAGTTACAT+AGG | 0.581634 | 5.2:+24081853 | MS.gene027646:CDS |
| TTGGCCTCCAACATCCCAAA+CGG | 0.582161 | 5.2:-24081615 | None:intergenic |
| AAGCTTGAGCTTGTAAAGGA+TGG | 0.590971 | 5.2:-24080463 | None:intergenic |
| ACAGAAACTTACCAATGGTA+GGG | 0.591759 | 5.2:-24080506 | None:intergenic |
| TACAGATTCGTCCACTGTGG+AGG | 0.592923 | 5.2:+24081763 | MS.gene027646:intron |
| GCACTACTTCCAGAACACTC+AGG | 0.597040 | 5.2:+24081785 | MS.gene027646:CDS |
| AAACTTACCAATGGTAGGGA+TGG | 0.599979 | 5.2:-24080502 | None:intergenic |
| CACTACTTCCAGAACACTCA+GGG | 0.606230 | 5.2:+24081786 | MS.gene027646:CDS |
| AGGGTTCAATGTGGAAACTG+TGG | 0.615557 | 5.2:+24081571 | MS.gene027646:intron |
| GAGCACCTGTGCAACTTCCG+GGG | 0.617937 | 5.2:+24082461 | MS.gene027646:CDS |
| GTTACATAGGATGTTGAATG+AGG | 0.618955 | 5.2:+24081866 | MS.gene027646:CDS |
| GGATGTTGGAGGCCAAGACA+AGG | 0.624916 | 5.2:+24081622 | MS.gene027646:CDS |
| CACCTGTGCAACTTCCGGGG+AGG | 0.625313 | 5.2:+24082464 | MS.gene027646:CDS |
| AACAGAAACTTACCAATGGT+AGG | 0.627334 | 5.2:-24080507 | None:intergenic |
| TGTCGTAGACAGCAATGACA+GGG | 0.669427 | 5.2:+24081818 | MS.gene027646:CDS |
| TCTGATGGTTGGTCTCGATG+CGG | 0.691288 | 5.2:+24080428 | MS.gene027646:CDS |
| TGGAAGTAGTGCCTCCACAG+TGG | 0.702478 | 5.2:-24081774 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTAAAAACATAAAATTTAA+AGG | - | chr5.2:24080817-24080836 | None:intergenic | 10.0% |
| !!! | GTAATTTTTAAATTTAAGAA+TGG | + | chr5.2:24081088-24081107 | MS.gene027646:intron | 10.0% |
| !!! | TTATTTATTGATTTGTTTTA+GGG | + | chr5.2:24081552-24081571 | MS.gene027646:intron | 10.0% |
| !!! | TTTATTTATTGATTTGTTTT+AGG | + | chr5.2:24081551-24081570 | MS.gene027646:intron | 10.0% |
| !!! | TTTATTTTAATTATCTTTTC+AGG | + | chr5.2:24082229-24082248 | MS.gene027646:intron | 10.0% |
| !!! | AACTATTCATTAACTTTTAT+TGG | + | chr5.2:24080972-24080991 | MS.gene027646:intron | 15.0% |
| !!! | ACAACATTTTATACTAAATA+GGG | - | chr5.2:24081302-24081321 | None:intergenic | 15.0% |
| !!! | TAACTTTATTTGACTTATTT+TGG | + | chr5.2:24081894-24081913 | MS.gene027646:intron | 15.0% |
| !!! | TATAAATTGAAGTTATTTCT+TGG | - | chr5.2:24080934-24080953 | None:intergenic | 15.0% |
| !! | AAAAAAACTAACCATAAGAA+AGG | + | chr5.2:24081139-24081158 | MS.gene027646:intron | 20.0% |
| !! | AAATCAACATTTGTACAAAA+AGG | - | chr5.2:24082555-24082574 | None:intergenic | 20.0% |
| !! | AATCAACATTTGTACAAAAA+GGG | - | chr5.2:24082554-24082573 | None:intergenic | 20.0% |
| !! | AGACAAAATACTAAATGAAT+GGG | - | chr5.2:24081002-24081021 | None:intergenic | 20.0% |
| !! | AGATAACTTTAATCTATGTT+TGG | - | chr5.2:24080696-24080715 | None:intergenic | 20.0% |
| !! | GAATTTCATTGATAAGATAA+TGG | + | chr5.2:24081042-24081061 | MS.gene027646:intron | 20.0% |
| !! | TACATATTTGATATCATAGT+GGG | + | chr5.2:24080589-24080608 | MS.gene027646:intron | 20.0% |
| !! | TAGACAAAATACTAAATGAA+TGG | - | chr5.2:24081003-24081022 | None:intergenic | 20.0% |
| !! | TATAAAATGTTGTCAAATAG+CGG | + | chr5.2:24081309-24081328 | MS.gene027646:intron | 20.0% |
| !!! | AAAGCTTTACATTTTTCATT+TGG | - | chr5.2:24082592-24082611 | None:intergenic | 20.0% |
| !!! | CTATTTTTCATTAATGTAAG+TGG | + | chr5.2:24081020-24081039 | MS.gene027646:intron | 20.0% |
| !!! | CTTATGGTTAGTTTTTTTAA+AGG | - | chr5.2:24081137-24081156 | None:intergenic | 20.0% |
| !!! | GACAACATTTTATACTAAAT+AGG | - | chr5.2:24081303-24081322 | None:intergenic | 20.0% |
| !!! | TTTTAAAGAATGCAAGAATA+GGG | - | chr5.2:24082671-24082690 | None:intergenic | 20.0% |
| ! | AAAATACTAAATGAATGGGT+GGG | - | chr5.2:24080998-24081017 | None:intergenic | 25.0% |
| ! | AAGTAATATTGTAGTTGTTG+AGG | - | chr5.2:24081425-24081444 | None:intergenic | 25.0% |
| ! | AATATGTGTTTGTTCAGTAT+CGG | + | chr5.2:24080559-24080578 | MS.gene027646:intron | 25.0% |
| ! | ACAATTATCAGAGATATGTT+CGG | - | chr5.2:24081707-24081726 | None:intergenic | 25.0% |
| ! | ATAGCCAATAAGGTAATAAT+CGG | + | chr5.2:24082522-24082541 | MS.gene027646:intron | 25.0% |
| ! | CTACATATTTGATATCATAG+TGG | + | chr5.2:24080588-24080607 | MS.gene027646:intron | 25.0% |
| ! | GTAAATTGCATCTAAACATA+AGG | - | chr5.2:24081665-24081684 | None:intergenic | 25.0% |
| ! | TAAAATGACCAACATACTTT+GGG | - | chr5.2:24080848-24080867 | None:intergenic | 25.0% |
| ! | TAAACCGATTATTACCTTAT+TGG | - | chr5.2:24082529-24082548 | None:intergenic | 25.0% |
| ! | TCTATGTTTGGTATAATAGT+CGG | - | chr5.2:24080684-24080703 | None:intergenic | 25.0% |
| !!! | GTTTTAAAGAATGCAAGAAT+AGG | - | chr5.2:24082672-24082691 | None:intergenic | 25.0% |
| !!! | TGTATTTTGTTGTGCATATT+AGG | + | chr5.2:24082028-24082047 | MS.gene027646:intron | 25.0% |
| AAACAAGCATATACGAACTA+AGG | - | chr5.2:24080891-24080910 | None:intergenic | 30.0% | |
| AACAAGCATATACGAACTAA+GGG | - | chr5.2:24080890-24080909 | None:intergenic | 30.0% | |
| AACTAACCATAAGAAAGGAA+TGG | + | chr5.2:24081144-24081163 | MS.gene027646:intron | 30.0% | |
| ATCATCAAAATACTTACCAG+TGG | - | chr5.2:24082367-24082386 | None:intergenic | 30.0% | |
| ATGCTCCTATGACAAATTTA+GGG | + | chr5.2:24081959-24081978 | MS.gene027646:intron | 30.0% | |
| CAAAAATTTACACCTTGTCT+TGG | - | chr5.2:24081637-24081656 | None:intergenic | 30.0% | |
| CAAAATACTAAATGAATGGG+TGG | - | chr5.2:24080999-24081018 | None:intergenic | 30.0% | |
| CAAATATGAATGTGAAGACA+TGG | - | chr5.2:24081929-24081948 | None:intergenic | 30.0% | |
| CCTGTAAGGTAAAAAGAATT+AGG | - | chr5.2:24082805-24082824 | None:intergenic | 30.0% | |
| CTAAAATGACCAACATACTT+TGG | - | chr5.2:24080849-24080868 | None:intergenic | 30.0% | |
| GCCAAGAACTCAATTATATA+TGG | - | chr5.2:24080744-24080763 | None:intergenic | 30.0% | |
| GCCATATATAATTGAGTTCT+TGG | + | chr5.2:24080740-24080759 | MS.gene027646:intron | 30.0% | |
| TAGTAACAGAAACTTACCAA+TGG | - | chr5.2:24080514-24080533 | None:intergenic | 30.0% | |
| TTTGACAATGCTTTCTATGA+TGG | + | chr5.2:24081444-24081463 | MS.gene027646:intron | 30.0% | |
| ! | ATTTGGAAGATCTTGTTTGT+TGG | - | chr5.2:24082288-24082307 | None:intergenic | 30.0% |
| ! | CCTAATTCTTTTTACCTTAC+AGG | + | chr5.2:24082802-24082821 | MS.gene027646:intron | 30.0% |
| ! | TGAGATCTAAAATACTCTTC+TGG | + | chr5.2:24082420-24082439 | MS.gene027646:intron | 30.0% |
| !! | TGCTTTCTATGATGGATTAT+TGG | + | chr5.2:24081452-24081471 | MS.gene027646:intron | 30.0% |
| !!! | ATTTGTTTTAGGGTTCAATG+TGG | + | chr5.2:24081562-24081581 | MS.gene027646:intron | 30.0% |
| !!! | CTTTTTCTGGAATGAATTAG+AGG | - | chr5.2:24082740-24082759 | None:intergenic | 30.0% |
| AACAGAAACTTACCAATGGT+AGG | - | chr5.2:24080510-24080529 | None:intergenic | 35.0% | |
| ACAGAAACTTACCAATGGTA+GGG | - | chr5.2:24080509-24080528 | None:intergenic | 35.0% | |
| ACCCAACTTGTCAGTAATTT+CGG | - | chr5.2:24082324-24082343 | None:intergenic | 35.0% | |
| ATAATTGTCTTCGAAGTCAG+TGG | + | chr5.2:24081719-24081738 | MS.gene027646:intron | 35.0% | |
| ATGAATTAGAGGAACTAGCA+AGG | - | chr5.2:24082729-24082748 | None:intergenic | 35.0% | |
| CCAGTTCTTGTAAATTTCCT+AGG | + | chr5.2:24082061-24082080 | MS.gene027646:intron | 35.0% | |
| CCTAGGAAATTTACAAGAAC+TGG | - | chr5.2:24082064-24082083 | None:intergenic | 35.0% | |
| CTCAAGATTCCAATCAATAC+TGG | - | chr5.2:24082404-24082423 | None:intergenic | 35.0% | |
| GAAATGAGAATTCTGATGGT+TGG | + | chr5.2:24080417-24080436 | MS.gene027646:CDS | 35.0% | |
| GAAGGAAATGAGAATTCTGA+TGG | + | chr5.2:24080413-24080432 | MS.gene027646:CDS | 35.0% | |
| GAGTTCCCTAAATTTGTCAT+AGG | - | chr5.2:24081967-24081986 | None:intergenic | 35.0% | |
| GATGCTCCTATGACAAATTT+AGG | + | chr5.2:24081958-24081977 | MS.gene027646:intron | 35.0% | |
| GCTATACTGCTATAGTGTAA+TGG | + | chr5.2:24081241-24081260 | MS.gene027646:intron | 35.0% | |
| GTTACATAGGATGTTGAATG+AGG | + | chr5.2:24081866-24081885 | MS.gene027646:CDS | 35.0% | |
| TAACCATAAGAAAGGAATGG+AGG | + | chr5.2:24081147-24081166 | MS.gene027646:intron | 35.0% | |
| TAGGTTTGTCAAAGTCACTA+TGG | + | chr5.2:24080638-24080657 | MS.gene027646:intron | 35.0% | |
| TCAAAGATCACTGAGGTAAT+TGG | - | chr5.2:24080766-24080785 | None:intergenic | 35.0% | |
| TTCCAACAACATAGCCAATA+AGG | + | chr5.2:24082512-24082531 | MS.gene027646:CDS | 35.0% | |
| TTCCATTTCAAAGATCACTG+AGG | - | chr5.2:24080773-24080792 | None:intergenic | 35.0% | |
| ! | AAAAGCAAGAGTGTGATCTT+TGG | + | chr5.2:24082755-24082774 | MS.gene027646:intron | 35.0% |
| ! | TACCTCAGTGATCTTTGAAA+TGG | + | chr5.2:24080768-24080787 | MS.gene027646:intron | 35.0% |
| ! | TACCTTATTGGCTATGTTGT+TGG | - | chr5.2:24082517-24082536 | None:intergenic | 35.0% |
| !! | TGTAGTTGTTGAGGAGTATT+TGG | - | chr5.2:24081416-24081435 | None:intergenic | 35.0% |
| !! | TTAGAAGCACTAAACATCCT+AGG | - | chr5.2:24082081-24082100 | None:intergenic | 35.0% |
| AAACTTACCAATGGTAGGGA+TGG | - | chr5.2:24080505-24080524 | None:intergenic | 40.0% | |
| AACAGCACAGTATAGACATC+AGG | - | chr5.2:24081196-24081215 | None:intergenic | 40.0% | |
| AAGCCAGAGATGAGTTACAT+AGG | + | chr5.2:24081853-24081872 | MS.gene027646:CDS | 40.0% | |
| AAGCTTGAGCTTGTAAAGGA+TGG | - | chr5.2:24080466-24080485 | None:intergenic | 40.0% | |
| AGCAAACCACTGTTGTTCTA+CGG | + | chr5.2:24081270-24081289 | MS.gene027646:intron | 40.0% | |
| ATATAAGACCCTGAGTGTTC+TGG | - | chr5.2:24081797-24081816 | None:intergenic | 40.0% | |
| ATCCTTTACAAGCTCAAGCT+TGG | + | chr5.2:24080465-24080484 | MS.gene027646:CDS | 40.0% | |
| ATGTGAAGACATGGCATCAA+AGG | - | chr5.2:24081920-24081939 | None:intergenic | 40.0% | |
| CATCCTATGTAACTCATCTC+TGG | - | chr5.2:24081859-24081878 | None:intergenic | 40.0% | |
| CATTCACAAAGCTGTTCAGT+CGG | + | chr5.2:24080379-24080398 | MS.gene027646:CDS | 40.0% | |
| CTTCCTCCATTCCTTTCTTA+TGG | - | chr5.2:24081153-24081172 | None:intergenic | 40.0% | |
| GCCGAAATTACTGACAAGTT+GGG | + | chr5.2:24082320-24082339 | MS.gene027646:CDS | 40.0% | |
| TATCAACCGTAGAACAACAG+TGG | - | chr5.2:24081279-24081298 | None:intergenic | 40.0% | |
| TCGTGGATAGCAGAAAATAG+TGG | - | chr5.2:24081380-24081399 | None:intergenic | 40.0% | |
| TGCCGAAATTACTGACAAGT+TGG | + | chr5.2:24082319-24082338 | MS.gene027646:CDS | 40.0% | |
| ! | AGAACATTAGCTTCACCGTT+TGG | + | chr5.2:24081600-24081619 | MS.gene027646:CDS | 40.0% |
| ! | ATACGAACTAAGGGAGTACA+TGG | - | chr5.2:24080881-24080900 | None:intergenic | 40.0% |
| ! | GAACATTAGCTTCACCGTTT+GGG | + | chr5.2:24081601-24081620 | MS.gene027646:CDS | 40.0% |
| ! | TCTGAGATCCCAAAGTATGT+TGG | + | chr5.2:24080837-24080856 | MS.gene027646:intron | 40.0% |
| ! | TTGGAAAGTGTAGTCAATCG+TGG | - | chr5.2:24081397-24081416 | None:intergenic | 40.0% |
| ! | TTTTACAGATTCGTCCACTG+TGG | + | chr5.2:24081760-24081779 | MS.gene027646:intron | 40.0% |
| !! | AATACTCTTCTGGTTCTTCC+AGG | + | chr5.2:24082430-24082449 | MS.gene027646:intron | 40.0% |
| !! | TGTGATCTTTGGAATCGCTT+AGG | + | chr5.2:24082766-24082785 | MS.gene027646:intron | 40.0% |
| !!! | GATCACACTCTTGCTTTTTC+TGG | - | chr5.2:24082753-24082772 | None:intergenic | 40.0% |
| AGGGTTCAATGTGGAAACTG+TGG | + | chr5.2:24081571-24081590 | MS.gene027646:intron | 45.0% | |
| CACTACTTCCAGAACACTCA+GGG | + | chr5.2:24081786-24081805 | MS.gene027646:CDS | 45.0% | |
| CACTGTGCAATGTGTCTTTG+TGG | + | chr5.2:24082639-24082658 | MS.gene027646:intron | 45.0% | |
| CTCCAAGCTTGAGCTTGTAA+AGG | - | chr5.2:24080470-24080489 | None:intergenic | 45.0% | |
| CTTGAGCTTGTAAAGGATGG+TGG | - | chr5.2:24080463-24080482 | None:intergenic | 45.0% | |
| GCTATAGCACTAGTGTGTAG+TGG | + | chr5.2:24081342-24081361 | MS.gene027646:intron | 45.0% | |
| GTCTCTATGAAGGTTTGGAC+TGG | + | chr5.2:24082487-24082506 | MS.gene027646:CDS | 45.0% | |
| TCGGCAGCATTCATTGCATT+TGG | - | chr5.2:24082305-24082324 | None:intergenic | 45.0% | |
| TGTCGTAGACAGCAATGACA+GGG | + | chr5.2:24081818-24081837 | MS.gene027646:CDS | 45.0% | |
| TTGTCGTAGACAGCAATGAC+AGG | + | chr5.2:24081817-24081836 | MS.gene027646:CDS | 45.0% | |
| ! | ACTAAGGGAGTACATGGCAT+TGG | - | chr5.2:24080875-24080894 | None:intergenic | 45.0% |
| ! | GATATCATAGTGGGAATGCC+AGG | + | chr5.2:24080598-24080617 | MS.gene027646:intron | 45.0% |
| !! | GCTTCGTGTCCAGTATTGAT+TGG | + | chr5.2:24082392-24082411 | MS.gene027646:intron | 45.0% |
| ACTATGGCTCGCTGTGATTC+TGG | + | chr5.2:24080654-24080673 | MS.gene027646:intron | 50.0% | |
| ACTGTGACACCAAACATGCC+TGG | - | chr5.2:24080619-24080638 | None:intergenic | 50.0% | |
| CAGTCGGTTATTCGCGAAGA+AGG | + | chr5.2:24080395-24080414 | MS.gene027646:CDS | 50.0% | |
| CTTACCAATGGTAGGGATGG+TGG | - | chr5.2:24080502-24080521 | None:intergenic | 50.0% | |
| GCACTACTTCCAGAACACTC+AGG | + | chr5.2:24081785-24081804 | MS.gene027646:CDS | 50.0% | |
| GGAGGGTCTCTATGAAGGTT+TGG | + | chr5.2:24082482-24082501 | MS.gene027646:CDS | 50.0% | |
| TACAGATTCGTCCACTGTGG+AGG | + | chr5.2:24081763-24081782 | MS.gene027646:intron | 50.0% | |
| TTGGCCTCCAACATCCCAAA+CGG | - | chr5.2:24081618-24081637 | None:intergenic | 50.0% | |
| ! | AGCTTCACCGTTTGGGATGT+TGG | + | chr5.2:24081608-24081627 | MS.gene027646:CDS | 50.0% |
| ! | TTCACCGTTTGGGATGTTGG+AGG | + | chr5.2:24081611-24081630 | MS.gene027646:CDS | 50.0% |
| !! | GGCATGTTTGGTGTCACAGT+AGG | + | chr5.2:24080619-24080638 | MS.gene027646:intron | 50.0% |
| !! | TCTGATGGTTGGTCTCGATG+CGG | + | chr5.2:24080428-24080447 | MS.gene027646:CDS | 50.0% |
| ACCTTCATAGAGACCCTCCC+CGG | - | chr5.2:24082481-24082500 | None:intergenic | 55.0% | |
| GGATGTTGGAGGCCAAGACA+AGG | + | chr5.2:24081622-24081641 | MS.gene027646:CDS | 55.0% | |
| GTCACCACCATCCCTACCAT+TGG | + | chr5.2:24080495-24080514 | MS.gene027646:CDS | 55.0% | |
| GTGGGAATGCCAGGCATGTT+TGG | + | chr5.2:24080607-24080626 | MS.gene027646:intron | 55.0% | |
| TGGAAGTAGTGCCTCCACAG+TGG | - | chr5.2:24081777-24081796 | None:intergenic | 55.0% | |
| ! | ACAGGTGCTCTGGATGTACC+TGG | - | chr5.2:24082451-24082470 | None:intergenic | 55.0% |
| ! | AGAGCACCTGTGCAACTTCC+GGG | + | chr5.2:24082460-24082479 | MS.gene027646:CDS | 55.0% |
| ! | CAGAGCACCTGTGCAACTTC+CGG | + | chr5.2:24082459-24082478 | MS.gene027646:CDS | 55.0% |
| ACCTGTGCAACTTCCGGGGA+GGG | + | chr5.2:24082465-24082484 | MS.gene027646:CDS | 60.0% | |
| CGGAAGTTGCACAGGTGCTC+TGG | - | chr5.2:24082461-24082480 | None:intergenic | 60.0% | |
| GAGCACCTGTGCAACTTCCG+GGG | + | chr5.2:24082461-24082480 | MS.gene027646:CDS | 60.0% | |
| TCCGGGGAGGGTCTCTATGA+AGG | + | chr5.2:24082477-24082496 | MS.gene027646:CDS | 60.0% | |
| !! | ACTCTCTGAGACAGCGCCAC+TGG | + | chr5.2:24082348-24082367 | MS.gene027646:CDS | 60.0% |
| !! | ATGGTTGGTCTCGATGCGGC+TGG | + | chr5.2:24080432-24080451 | MS.gene027646:CDS | 60.0% |
| ACCCTCCCCGGAAGTTGCAC+AGG | - | chr5.2:24082469-24082488 | None:intergenic | 65.0% | |
| CACCTGTGCAACTTCCGGGG+AGG | + | chr5.2:24082464-24082483 | MS.gene027646:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 24080369 | 24082829 | 24080369 | ID=MS.gene027646 |
| chr5.2 | mRNA | 24080369 | 24082829 | 24080369 | ID=MS.gene027646.t1;Parent=MS.gene027646 |
| chr5.2 | exon | 24080369 | 24080516 | 24080369 | ID=MS.gene027646.t1.exon1;Parent=MS.gene027646.t1 |
| chr5.2 | CDS | 24080369 | 24080516 | 24080369 | ID=cds.MS.gene027646.t1;Parent=MS.gene027646.t1 |
| chr5.2 | exon | 24081573 | 24081643 | 24081573 | ID=MS.gene027646.t1.exon2;Parent=MS.gene027646.t1 |
| chr5.2 | CDS | 24081573 | 24081643 | 24081573 | ID=cds.MS.gene027646.t1;Parent=MS.gene027646.t1 |
| chr5.2 | exon | 24081768 | 24081887 | 24081768 | ID=MS.gene027646.t1.exon3;Parent=MS.gene027646.t1 |
| chr5.2 | CDS | 24081768 | 24081887 | 24081768 | ID=cds.MS.gene027646.t1;Parent=MS.gene027646.t1 |
| chr5.2 | exon | 24082251 | 24082369 | 24082251 | ID=MS.gene027646.t1.exon4;Parent=MS.gene027646.t1 |
| chr5.2 | CDS | 24082251 | 24082369 | 24082251 | ID=cds.MS.gene027646.t1;Parent=MS.gene027646.t1 |
| chr5.2 | exon | 24082452 | 24082533 | 24082452 | ID=MS.gene027646.t1.exon5;Parent=MS.gene027646.t1 |
| chr5.2 | CDS | 24082452 | 24082533 | 24082452 | ID=cds.MS.gene027646.t1;Parent=MS.gene027646.t1 |
| chr5.2 | exon | 24082824 | 24082829 | 24082824 | ID=MS.gene027646.t1.exon6;Parent=MS.gene027646.t1 |
| chr5.2 | CDS | 24082824 | 24082829 | 24082824 | ID=cds.MS.gene027646.t1;Parent=MS.gene027646.t1 |
| Gene Sequence |
| Protein sequence |
