AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene031764


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031764.t1 MTR_4g077640 99.487 195 1 0 1 195 1 195 2.80e-144 399
MS.gene031764.t1 MTR_5g007810 88.718 195 17 1 1 195 1 190 2.83e-128 358
MS.gene031764.t1 MTR_5g007820 77.660 188 40 1 1 186 1 188 1.35e-106 304
MS.gene031764.t1 MTR_5g007840 62.500 216 36 2 1 183 1 204 5.71e-89 259
MS.gene031764.t1 MTR_7g109960 61.017 177 69 0 1 177 1 177 1.56e-81 240
MS.gene031764.t1 MTR_1g086480 61.017 177 69 0 1 177 1 177 2.01e-81 239
MS.gene031764.t1 MTR_6g005820 61.017 177 69 0 1 177 1 177 2.88e-81 239
MS.gene031764.t1 MTR_5g034130 61.017 177 69 0 1 177 1 177 3.66e-81 239
MS.gene031764.t1 MTR_5g034125 61.017 177 69 0 1 177 1 177 3.66e-81 239
MS.gene031764.t1 MTR_5g016540 58.757 177 73 0 1 177 1 177 6.60e-78 231
MS.gene031764.t1 MTR_4g128910 56.742 178 77 0 1 178 1 178 3.51e-71 214
MS.gene031764.t1 MTR_1g076550 49.425 174 88 0 1 174 1 174 5.95e-59 183
MS.gene031764.t1 MTR_8g077540 44.304 158 85 3 18 173 17 173 1.21e-43 144
MS.gene031764.t1 MTR_8g077540 44.304 158 85 3 18 173 43 199 4.51e-43 143
MS.gene031764.t1 MTR_2g022200 31.579 190 119 2 1 181 1 188 1.93e-29 108
MS.gene031764.t1 MTR_5g078090 34.965 143 92 1 11 152 13 155 3.23e-27 102
MS.gene031764.t1 MTR_5g015370 31.788 151 102 1 3 152 5 155 4.60e-26 99.0
MS.gene031764.t1 MTR_8g077540 45.361 97 51 2 18 113 17 112 6.18e-26 97.4
MS.gene031764.t1 MTR_2g034640 29.843 191 114 3 8 178 3 193 1.72e-24 95.1
MS.gene031764.t1 MTR_4g121860 30.366 191 113 3 8 178 3 193 9.86e-24 93.2
MS.gene031764.t1 MTR_7g112090 29.319 191 115 3 8 178 3 193 6.61e-23 91.3
MS.gene031764.t1 MTR_4g026950 26.752 157 114 1 18 173 1 157 1.87e-20 84.0
MS.gene031764.t1 MTR_2g006010 52.381 63 15 1 28 90 21 68 1.03e-13 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031764.t1 AT3G03120 91.534 189 16 0 1 189 1 189 3.11e-130 363
MS.gene031764.t1 AT5G17060 90.476 189 18 0 1 189 1 189 3.70e-130 363
MS.gene031764.t1 AT5G17060 90.476 189 18 0 1 189 1 189 3.70e-130 363
MS.gene031764.t1 AT3G03120 93.846 130 8 0 1 130 1 130 1.66e-87 253
MS.gene031764.t1 AT1G10630 61.017 177 69 0 1 177 1 177 1.60e-81 240
MS.gene031764.t1 AT1G10630 61.017 177 69 0 1 177 1 177 1.60e-81 240
MS.gene031764.t1 AT1G70490 61.017 177 69 0 1 177 1 177 2.34e-81 239
MS.gene031764.t1 AT1G70490 61.017 177 69 0 1 177 1 177 2.34e-81 239
MS.gene031764.t1 AT1G70490 61.017 177 69 0 1 177 1 177 2.34e-81 239
MS.gene031764.t1 AT1G70490 61.017 177 69 0 1 177 1 177 2.34e-81 239
MS.gene031764.t1 AT1G70490 61.017 177 69 0 1 177 1 177 2.34e-81 239
MS.gene031764.t1 AT1G70490 61.017 177 69 0 1 177 1 177 2.34e-81 239
MS.gene031764.t1 AT1G23490 61.017 177 69 0 1 177 1 177 2.34e-81 239
MS.gene031764.t1 AT1G70490 61.017 177 69 0 1 177 1 177 2.34e-81 239
MS.gene031764.t1 AT3G62290 61.017 177 69 0 1 177 1 177 4.38e-81 239
MS.gene031764.t1 AT3G62290 61.017 177 69 0 1 177 1 177 4.38e-81 239
MS.gene031764.t1 AT3G62290 61.017 177 69 0 1 177 1 177 4.38e-81 239
MS.gene031764.t1 AT2G47170 61.017 177 69 0 1 177 1 177 5.04e-81 239
MS.gene031764.t1 AT2G47170 61.017 177 69 0 1 177 1 177 5.04e-81 239
MS.gene031764.t1 AT2G47170 61.017 177 69 0 1 177 1 177 5.04e-81 239
MS.gene031764.t1 AT5G14670 61.017 177 69 0 1 177 1 177 6.35e-81 238
MS.gene031764.t1 AT5G14670 61.017 177 69 0 1 177 1 177 6.35e-81 238
MS.gene031764.t1 AT5G14670 61.017 177 69 0 1 177 1 177 8.47e-81 238
MS.gene031764.t1 AT2G24765 57.865 178 75 0 1 178 1 178 2.35e-73 219
MS.gene031764.t1 AT2G15310 53.158 190 87 1 1 188 1 190 2.84e-71 215
MS.gene031764.t1 AT3G22950 50.575 174 86 0 1 174 1 174 1.87e-61 189
MS.gene031764.t1 AT3G22950 50.575 174 86 0 1 174 1 174 1.87e-61 189
MS.gene031764.t1 AT2G24765 58.594 128 53 0 1 128 1 128 2.80e-51 162
MS.gene031764.t1 AT1G02430 43.684 190 97 4 1 180 1 190 1.26e-47 154
MS.gene031764.t1 AT1G02440 40.000 190 104 4 1 180 1 190 6.25e-45 147
MS.gene031764.t1 AT2G18390 45.570 158 83 3 18 173 17 173 2.60e-44 145
MS.gene031764.t1 AT1G02430 41.875 160 87 3 1 154 1 160 1.26e-35 123
MS.gene031764.t1 AT5G52210 33.702 181 113 2 8 181 8 188 6.21e-31 112
MS.gene031764.t1 AT5G52210 33.702 181 113 2 8 181 8 188 6.21e-31 112
MS.gene031764.t1 AT3G49870 30.814 172 118 1 3 173 5 176 2.14e-26 100
MS.gene031764.t1 AT5G37680 32.867 143 95 1 11 152 13 155 2.48e-26 99.8
MS.gene031764.t1 AT3G49860 32.117 137 92 1 17 152 11 147 2.73e-25 97.1
MS.gene031764.t1 AT5G67560 30.488 164 113 1 11 173 13 176 1.14e-24 95.5
MS.gene031764.t1 AT3G49870 30.573 157 108 1 18 173 1 157 8.85e-24 92.8
MS.gene031764.t1 AT3G62560 30.000 190 113 4 8 177 3 192 1.19e-22 90.5
MS.gene031764.t1 AT1G56330 28.421 190 116 2 8 177 3 192 1.32e-22 90.5
MS.gene031764.t1 AT4G02080 28.272 191 117 3 8 178 3 193 2.99e-22 89.4
MS.gene031764.t1 AT1G09180 28.796 191 116 3 8 178 3 193 7.61e-22 88.6
MS.gene031764.t1 AT5G37680 30.469 128 89 0 46 173 2 129 1.00e-21 86.7
MS.gene031764.t1 AT1G02440 31.613 155 70 4 1 154 1 120 1.32e-20 83.2

Find 48 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAGCAAAGCAGGAATTTC+AGG 0.253795 4.3:+31252571 MS.gene031764:CDS
TGATGGCCTTTATGAGGGTT+TGG 0.331261 4.3:+31254178 MS.gene031764:CDS
TTGATCTAAAGAATAGAAAA+TGG 0.336411 4.3:+31254126 MS.gene031764:CDS
ACAAGGCACCTGTGCACTTA+AGG 0.339217 4.3:+31254154 MS.gene031764:CDS
AAACTCTTCGATTCCTTCTT+CGG 0.364291 4.3:+31251053 MS.gene031764:CDS
TTATCTACTGTTCCTACAAT+TGG 0.369753 4.3:+31251773 MS.gene031764:CDS
ATGACACTGTTGAGCATAAA+CGG 0.386547 4.3:-31252702 None:intergenic
GTCTGGACCGTGAGAGAATT+GGG 0.392903 4.3:+31252549 MS.gene031764:CDS
TAAGGGTGATGGCCTTTATG+AGG 0.405630 4.3:+31254172 MS.gene031764:CDS
AGGGAAGTGTGTGACGGATT+AGG 0.411446 4.3:+31254098 MS.gene031764:CDS
GTGGTTTAGGTTGTCATGCT+TGG 0.425719 4.3:+31251695 MS.gene031764:intron
AAATAAAACCCACCAATTGT+AGG 0.427108 4.3:-31251785 None:intergenic
AGTCTGGACCGTGAGAGAAT+TGG 0.428076 4.3:+31252548 MS.gene031764:CDS
GATATATGTTGTTGATAGTC+TGG 0.429765 4.3:+31252532 MS.gene031764:intron
CAAGGCACCTGTGCACTTAA+GGG 0.443318 4.3:+31254155 MS.gene031764:CDS
ACCAGTCCAAACCCTCATAA+AGG 0.443770 4.3:-31254184 None:intergenic
GCTGCTGGATACTCTTCATT+AGG 0.445230 4.3:+31254233 MS.gene031764:CDS
AAAGTGTCCTCAATTTCTCT+TGG 0.449055 4.3:-31252304 None:intergenic
ACATACCAGGTCTTGTTTGT+TGG 0.462219 4.3:-31252736 None:intergenic
TATGCTCAACAGTGTCATCT+TGG 0.465762 4.3:+31252707 MS.gene031764:CDS
ATGCTTGGTCTTGATGCTGC+TGG 0.478012 4.3:+31251710 MS.gene031764:CDS
TTGCTTTCCCAATTCTCTCA+CGG 0.480979 4.3:-31252556 None:intergenic
AAGAGAAATTGAGGACACTT+TGG 0.498427 4.3:+31252306 MS.gene031764:CDS
CATCTCGGTATTGCCGAAGA+AGG 0.507052 4.3:-31251066 None:intergenic
TTCACGGTTTGGGATGTTGG+AGG 0.507103 4.3:+31252281 MS.gene031764:CDS
GAGAATTGGGAAAGCAAAGC+AGG 0.509211 4.3:+31252562 MS.gene031764:CDS
GCCTTTATGAGGGTTTGGAC+TGG 0.513026 4.3:+31254183 MS.gene031764:CDS
CTGAAGGAGATGAAGGCTGC+TGG 0.519424 4.3:+31254218 MS.gene031764:CDS
CTCAACACTGAAGGAGATGA+AGG 0.520559 4.3:+31254211 MS.gene031764:CDS
AGAAATTGAGGACACTTTGG+AGG 0.527256 4.3:+31252309 MS.gene031764:CDS
TGACACTGTTGAGCATAAAC+GGG 0.527829 4.3:-31252701 None:intergenic
ACCTGTGCACTTAAGGGTGA+TGG 0.530294 4.3:+31254161 MS.gene031764:CDS
TTGGAGGCCAAGAGAAATTG+AGG 0.540924 4.3:+31252297 MS.gene031764:CDS
AAGGGTGATGGCCTTTATGA+GGG 0.543901 4.3:+31254173 MS.gene031764:CDS
CTTCATCTCCTTCAGTGTTG+AGG 0.544907 4.3:-31254210 None:intergenic
GCCATCACCCTTAAGTGCAC+AGG 0.550998 4.3:-31254162 None:intergenic
GAGAGGAGCGATGACGGCAA+GGG 0.553248 4.3:+31254079 MS.gene031764:intron
CTTCGGCAATACCGAGATGC+GGG 0.555246 4.3:+31251070 MS.gene031764:CDS
AGAGAGGAGCGATGACGGCA+AGG 0.563849 4.3:+31254078 MS.gene031764:intron
TTTCTAGAGAGGAGCGATGA+CGG 0.572515 4.3:+31254073 MS.gene031764:intron
CTGGTTGTCCTCAACACTGA+AGG 0.574863 4.3:+31254202 MS.gene031764:CDS
AATAGAAAATGGCACATACA+AGG 0.575931 4.3:+31254137 MS.gene031764:CDS
AAATTTGATTACCCGCATCT+CGG 0.577874 4.3:-31251081 None:intergenic
GGATACTCTTCATTAGGACT+AGG 0.607922 4.3:+31254239 MS.gene031764:CDS
ATATTGTACAAGCTTCACAT+TGG 0.619894 4.3:+31251743 MS.gene031764:CDS
ACTTGCCAACAAACAAGACC+TGG 0.637361 4.3:+31252731 MS.gene031764:CDS
ACGGCAAGGGAAGTGTGTGA+CGG 0.660211 4.3:+31254092 MS.gene031764:CDS
TCTTCGGCAATACCGAGATG+CGG 0.663090 4.3:+31251069 MS.gene031764:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAATAAATCTACTC+TGG + chr4.3:31251387-31251406 MS.gene031764:intron 15.0%
!! AATATTCATTATTTACTTAC+TGG + chr4.3:31253213-31253232 MS.gene031764:intron 15.0%
!! ATTTAAATAGCTGTAATATA+TGG + chr4.3:31252947-31252966 MS.gene031764:intron 15.0%
!! GAATTTCTAATTATATTATG+AGG - chr4.3:31253660-31253679 None:intergenic 15.0%
!!! AATTTTACATAATCAATTCT+TGG - chr4.3:31251217-31251236 None:intergenic 15.0%
!!! AGAATTAATTTTGACAAATT+TGG - chr4.3:31251418-31251437 None:intergenic 15.0%
!!! TGATTATGTAAAATTGATTT+CGG + chr4.3:31251222-31251241 MS.gene031764:intron 15.0%
!!! TTCTTTTTTTCTTTCAAATT+TGG + chr4.3:31251671-31251690 MS.gene031764:intron 15.0%
!! AATATGTCAAATTTCATCAA+TGG + chr4.3:31253912-31253931 MS.gene031764:intron 20.0%
!! AATTGTATTGCAAATATATG+TGG + chr4.3:31252095-31252114 MS.gene031764:intron 20.0%
!! ATAAGAATAATTGTAGCAAA+AGG - chr4.3:31252440-31252459 None:intergenic 20.0%
!! ATTGATGAAATTTGACATAT+TGG - chr4.3:31253913-31253932 None:intergenic 20.0%
!! CAATTATTCTTATATCCTAT+AGG + chr4.3:31252447-31252466 MS.gene031764:intron 20.0%
!! TTGATCTAAAGAATAGAAAA+TGG + chr4.3:31254126-31254145 MS.gene031764:CDS 20.0%
!! TTGATGAAATTTGACATATT+GGG - chr4.3:31253912-31253931 None:intergenic 20.0%
!!! AGAACTTTTTTAAGCAAAAA+CGG + chr4.3:31253700-31253719 MS.gene031764:intron 20.0%
!!! GTATAAGAATGTTATTTTCA+CGG + chr4.3:31252265-31252284 MS.gene031764:CDS 20.0%
!!! TAGAGTTTTAATGTATGTTT+GGG + chr4.3:31251188-31251207 MS.gene031764:intron 20.0%
!!! TCTATGAAACTTTTTTTTGA+TGG + chr4.3:31252027-31252046 MS.gene031764:intron 20.0%
! AAGATTTGAAAAACATACAC+GGG - chr4.3:31253620-31253639 None:intergenic 25.0%
! AATGCTAATAAAGTTGTGTT+TGG + chr4.3:31251883-31251902 MS.gene031764:intron 25.0%
! ACAACATATACAAATAGTGA+AGG - chr4.3:31253252-31253271 None:intergenic 25.0%
! AGAAAGCTACATTAACAATT+TGG - chr4.3:31251491-31251510 None:intergenic 25.0%
! AGCAATAATTCGATTATTTC+GGG + chr4.3:31251519-31251538 MS.gene031764:intron 25.0%
! AGCAGAACGAAAATTATAAT+TGG + chr4.3:31252166-31252185 MS.gene031764:intron 25.0%
! ATATATGGAATATGGTTCAA+AGG + chr4.3:31252962-31252981 MS.gene031764:intron 25.0%
! ATTATTATGTAAAAGTGAGC+TGG + chr4.3:31251286-31251305 MS.gene031764:intron 25.0%
! ATTTGCAATACAATTACAGA+GGG - chr4.3:31252090-31252109 None:intergenic 25.0%
! CAAGATTTGAAAAACATACA+CGG - chr4.3:31253621-31253640 None:intergenic 25.0%
! CAGCAATAATTCGATTATTT+CGG + chr4.3:31251518-31251537 MS.gene031764:intron 25.0%
! GATTACATAAAGAATTCAAG+TGG - chr4.3:31253847-31253866 None:intergenic 25.0%
! GGATATACATAATCATACAA+AGG - chr4.3:31253966-31253985 None:intergenic 25.0%
! TAGCTGTAATATATGGAATA+TGG + chr4.3:31252954-31252973 MS.gene031764:intron 25.0%
! TATTTGCAATACAATTACAG+AGG - chr4.3:31252091-31252110 None:intergenic 25.0%
! TCAAACTTGAAGCTAAAAAT+TGG - chr4.3:31251355-31251374 None:intergenic 25.0%
! TTGCAGTTATAGCTAAATTA+AGG - chr4.3:31254038-31254057 None:intergenic 25.0%
! TTTCTGTTGTCTAAGTTAAA+GGG + chr4.3:31253391-31253410 MS.gene031764:intron 25.0%
! TTTGTATATGTTGTCATTGT+TGG + chr4.3:31253258-31253277 MS.gene031764:intron 25.0%
!! TGAATATTTTCAACTGTACT+TGG - chr4.3:31253201-31253220 None:intergenic 25.0%
!!! AAGGGAAGAAAACTTATTTT+AGG + chr4.3:31253409-31253428 MS.gene031764:intron 25.0%
!!! AGAGTTTTAATGTATGTTTG+GGG + chr4.3:31251189-31251208 MS.gene031764:intron 25.0%
!!! GTAGAGTTTTAATGTATGTT+TGG + chr4.3:31251187-31251206 MS.gene031764:intron 25.0%
!!! GTATGTTTTTCAAATCTTGA+GGG + chr4.3:31253622-31253641 MS.gene031764:intron 25.0%
!!! GTGTTAATTTGTAAGCTTTT+GGG - chr4.3:31252604-31252623 None:intergenic 25.0%
!!! TGTATGTTTTTCAAATCTTG+AGG + chr4.3:31253621-31253640 MS.gene031764:intron 25.0%
!!! TGTGTTAATTTGTAAGCTTT+TGG - chr4.3:31252605-31252624 None:intergenic 25.0%
!!! TTTTTCTTTCAAATTTGGTG+TGG + chr4.3:31251676-31251695 MS.gene031764:intron 25.0%
AAAAACAGAAAACTGCAAGA+CGG - chr4.3:31253097-31253116 None:intergenic 30.0%
AAATAAAACCCACCAATTGT+AGG - chr4.3:31251788-31251807 None:intergenic 30.0%
AATAGAAAATGGCACATACA+AGG + chr4.3:31254137-31254156 MS.gene031764:CDS 30.0%
ACTGGTATGTGCATTAATTA+TGG - chr4.3:31252894-31252913 None:intergenic 30.0%
AGCTAAATTAAGGCAAACTT+AGG - chr4.3:31254028-31254047 None:intergenic 30.0%
ATAGAACATCAGAATTCATG+AGG - chr4.3:31252012-31252031 None:intergenic 30.0%
ATATTGTACAAGCTTCACAT+TGG + chr4.3:31251743-31251762 MS.gene031764:CDS 30.0%
CAAAGTCAAATCATGTGAAT+TGG + chr4.3:31252826-31252845 MS.gene031764:intron 30.0%
CTTTCTGTTGTCTAAGTTAA+AGG + chr4.3:31253390-31253409 MS.gene031764:intron 30.0%
GCAATAATTCGATTATTTCG+GGG + chr4.3:31251520-31251539 MS.gene031764:intron 30.0%
GTATTGCAAATATATGTGGT+GGG + chr4.3:31252099-31252118 MS.gene031764:intron 30.0%
TAAGTTATAGGTCATTCAGA+TGG - chr4.3:31252788-31252807 None:intergenic 30.0%
TAGAACATCAGAATTCATGA+GGG - chr4.3:31252011-31252030 None:intergenic 30.0%
TATAAGTTTGTATGCATTGC+AGG + chr4.3:31252221-31252240 MS.gene031764:intron 30.0%
TCTTTACACGTGTAAGTTAT+AGG - chr4.3:31252800-31252819 None:intergenic 30.0%
TGTATTGCAAATATATGTGG+TGG + chr4.3:31252098-31252117 MS.gene031764:intron 30.0%
TGTTTAAATATGCTTGTGAG+CGG + chr4.3:31251972-31251991 MS.gene031764:intron 30.0%
TTAGGAGTAGTTAATTGAAG+AGG - chr4.3:31254010-31254029 None:intergenic 30.0%
TTATCTACTGTTCCTACAAT+TGG + chr4.3:31251773-31251792 MS.gene031764:CDS 30.0%
TTTCTTTCCTCTTATAATGC+TGG + chr4.3:31252992-31253011 MS.gene031764:intron 30.0%
TTTGCAATACAATTACAGAG+GGG - chr4.3:31252089-31252108 None:intergenic 30.0%
! AAAACACAACTTGTGTCATT+TGG + chr4.3:31252400-31252419 MS.gene031764:intron 30.0%
! ACTAGTATCAAGACTTTTTG+TGG - chr4.3:31253755-31253774 None:intergenic 30.0%
! ATCTAACCAGTGTTGTTAAA+TGG + chr4.3:31253435-31253454 MS.gene031764:intron 30.0%
! ATGCTTGCTAATTATCTACT+TGG + chr4.3:31251933-31251952 MS.gene031764:intron 30.0%
! TCTAACCAGTGTTGTTAAAT+GGG + chr4.3:31253436-31253455 MS.gene031764:intron 30.0%
! TTTTAACAACACAGATGGTT+TGG + chr4.3:31252337-31252356 MS.gene031764:CDS 30.0%
!! GATATATGTTGTTGATAGTC+TGG + chr4.3:31252532-31252551 MS.gene031764:intron 30.0%
!! TTTCAAATTTGGTGTGGTTT+AGG + chr4.3:31251682-31251701 MS.gene031764:intron 30.0%
!!! AGAATGTTATTTTCACGGTT+TGG + chr4.3:31252270-31252289 MS.gene031764:CDS 30.0%
!!! CACTATTTTAACAACACAGA+TGG + chr4.3:31252332-31252351 MS.gene031764:CDS 30.0%
!!! GAATGTTATTTTCACGGTTT+GGG + chr4.3:31252271-31252290 MS.gene031764:CDS 30.0%
AAACTCTTCGATTCCTTCTT+CGG + chr4.3:31251053-31251072 MS.gene031764:CDS 35.0%
AAATTTGATTACCCGCATCT+CGG - chr4.3:31251084-31251103 None:intergenic 35.0%
AAGAGAAATTGAGGACACTT+TGG + chr4.3:31252306-31252325 MS.gene031764:CDS 35.0%
AATTCGATTATTTCGGGGTT+GGG + chr4.3:31251525-31251544 MS.gene031764:intron 35.0%
ACCAGACTAATTACACAGAT+GGG - chr4.3:31253127-31253146 None:intergenic 35.0%
ACCATAGACAATTTATGACG+GGG + chr4.3:31253507-31253526 MS.gene031764:intron 35.0%
AGATCAATTCAAAGCCTGTT+TGG - chr4.3:31252652-31252671 None:intergenic 35.0%
ATACCAGTGCAAACATTGAA+GGG + chr4.3:31252906-31252925 MS.gene031764:intron 35.0%
ATGACACTGTTGAGCATAAA+CGG - chr4.3:31252705-31252724 None:intergenic 35.0%
CACAACATGTTATTCCAAAC+AGG + chr4.3:31252635-31252654 MS.gene031764:intron 35.0%
CACCATAGACAATTTATGAC+GGG + chr4.3:31253506-31253525 MS.gene031764:intron 35.0%
CCACCATAGACAATTTATGA+CGG + chr4.3:31253505-31253524 MS.gene031764:intron 35.0%
GACTGAAAAGTCAGGATATT+GGG + chr4.3:31252469-31252488 MS.gene031764:intron 35.0%
GATATTGGGCTAATGTATCA+AGG + chr4.3:31252483-31252502 MS.gene031764:intron 35.0%
GGAATATGGTTCAAAGGTTA+AGG + chr4.3:31252968-31252987 MS.gene031764:intron 35.0%
GTAACAACCAGCATTATAAG+AGG - chr4.3:31253002-31253021 None:intergenic 35.0%
TAATTCGATTATTTCGGGGT+TGG + chr4.3:31251524-31251543 MS.gene031764:intron 35.0%
TACCAGACTAATTACACAGA+TGG - chr4.3:31253128-31253147 None:intergenic 35.0%
TTGAATGGATGCAAACATGA+TGG + chr4.3:31252132-31252151 MS.gene031764:intron 35.0%
TTGCAATACAATTACAGAGG+GGG - chr4.3:31252088-31252107 None:intergenic 35.0%
TTGTGGTCAAGCATAATGAT+GGG - chr4.3:31253738-31253757 None:intergenic 35.0%
TTTGAAAAACATACACGGGT+TGG - chr4.3:31253616-31253635 None:intergenic 35.0%
TTTGTGGTCAAGCATAATGA+TGG - chr4.3:31253739-31253758 None:intergenic 35.0%
! AAAGTGTCCTCAATTTCTCT+TGG - chr4.3:31252307-31252326 None:intergenic 35.0%
! ACTGACTTAGAATGTTCACA+TGG - chr4.3:31253326-31253345 None:intergenic 35.0%
! TACTAGTGAGACTTGAGTTT+TGG + chr4.3:31253768-31253787 MS.gene031764:intron 35.0%
!! ACAGGCTTTGAATTGATCTA+TGG + chr4.3:31252653-31252672 MS.gene031764:intron 35.0%
!! ATGCAAACATGATGGTGTTT+TGG + chr4.3:31252140-31252159 MS.gene031764:intron 35.0%
!! GTGTTTATATGGTGGATGTT+TGG + chr4.3:31253565-31253584 MS.gene031764:intron 35.0%
!! TGTTTTTCAAATCTTGAGGG+AGG + chr4.3:31253625-31253644 MS.gene031764:intron 35.0%
!! TTTCCTCTTCTTTTCTAGAG+AGG + chr4.3:31254062-31254081 MS.gene031764:intron 35.0%
ACACAAGTGACACAATCTGT+TGG - chr4.3:31253300-31253319 None:intergenic 40.0%
ACCCATCTGTGTAATTAGTC+TGG + chr4.3:31253123-31253142 MS.gene031764:intron 40.0%
AGAAATTGAGGACACTTTGG+AGG + chr4.3:31252309-31252328 MS.gene031764:CDS 40.0%
AGTGATCAGCTAGCAATACA+AGG - chr4.3:31253987-31254006 None:intergenic 40.0%
ATGGTCCCATTTAACAACAC+TGG - chr4.3:31253444-31253463 None:intergenic 40.0%
CAGATCAAGATACACATACC+AGG - chr4.3:31252752-31252771 None:intergenic 40.0%
CATACCAGTGCAAACATTGA+AGG + chr4.3:31252905-31252924 MS.gene031764:intron 40.0%
CCATAGACAATTTATGACGG+GGG + chr4.3:31253508-31253527 MS.gene031764:intron 40.0%
CCGTCATAAATTGTCTATGG+TGG - chr4.3:31253508-31253527 None:intergenic 40.0%
CCTCAAAGCTTAAACAACAG+TGG - chr4.3:31252199-31252218 None:intergenic 40.0%
CTACTGTTCCTACAATTGGT+GGG + chr4.3:31251777-31251796 MS.gene031764:intron 40.0%
GAAAGCAAAGCAGGAATTTC+AGG + chr4.3:31252571-31252590 MS.gene031764:CDS 40.0%
GATAAGGAGTTGGAGATTCA+AGG + chr4.3:31251572-31251591 MS.gene031764:intron 40.0%
GGACTGAAAAGTCAGGATAT+TGG + chr4.3:31252468-31252487 MS.gene031764:intron 40.0%
GGATACTCTTCATTAGGACT+AGG + chr4.3:31254239-31254258 MS.gene031764:CDS 40.0%
GTGGGTTTCTGTGAATTGAA+TGG + chr4.3:31252117-31252136 MS.gene031764:intron 40.0%
TAATCTTTCCCACATGATCG+TGG + chr4.3:31253862-31253881 MS.gene031764:intron 40.0%
TACCAGTGCAAACATTGAAG+GGG + chr4.3:31252907-31252926 MS.gene031764:intron 40.0%
TATGCTCAACAGTGTCATCT+TGG + chr4.3:31252707-31252726 MS.gene031764:CDS 40.0%
TCCTATAGGACTGAAAAGTC+AGG + chr4.3:31252461-31252480 MS.gene031764:intron 40.0%
TCTACTGTTCCTACAATTGG+TGG + chr4.3:31251776-31251795 MS.gene031764:intron 40.0%
TGAACTAAGGGATAAGGAGT+TGG + chr4.3:31251562-31251581 MS.gene031764:intron 40.0%
TGACACTGTTGAGCATAAAC+GGG - chr4.3:31252704-31252723 None:intergenic 40.0%
TTGCTTTCCCAATTCTCTCA+CGG - chr4.3:31252559-31252578 None:intergenic 40.0%
! AGTGTTGTTAAATGGGACCA+TGG + chr4.3:31253443-31253462 MS.gene031764:intron 40.0%
! CCACTGTTGTTTAAGCTTTG+AGG + chr4.3:31252196-31252215 MS.gene031764:intron 40.0%
! CTGGTTTGAACTAAGGGATA+AGG + chr4.3:31251556-31251575 MS.gene031764:intron 40.0%
! CTGTACTTGGTTCTTGTTGT+TGG - chr4.3:31253188-31253207 None:intergenic 40.0%
! TCCTGACTTTTCAGTCCTAT+AGG - chr4.3:31252465-31252484 None:intergenic 40.0%
!! ACATACCAGGTCTTGTTTGT+TGG - chr4.3:31252739-31252758 None:intergenic 40.0%
!! AGCTCAACTGGTTTGAACTA+AGG + chr4.3:31251549-31251568 MS.gene031764:intron 40.0%
!! ATTTTCACGGTTTGGGATGT+TGG + chr4.3:31252278-31252297 MS.gene031764:CDS 40.0%
!! GCTCAACTGGTTTGAACTAA+GGG + chr4.3:31251550-31251569 MS.gene031764:intron 40.0%
!! TACTTGGTTCTTGTTGTTGG+TGG - chr4.3:31253185-31253204 None:intergenic 40.0%
!! TAGTGAGACTTGAGTTTTGG+TGG + chr4.3:31253771-31253790 MS.gene031764:intron 40.0%
!! TCTTGTTGTTGGTGGTCTAT+TGG - chr4.3:31253177-31253196 None:intergenic 40.0%
ACCAGTCCAAACCCTCATAA+AGG - chr4.3:31254187-31254206 None:intergenic 45.0%
ACTTGCCAACAAACAAGACC+TGG + chr4.3:31252731-31252750 MS.gene031764:CDS 45.0%
AGTCATGAACCACGATCATG+TGG - chr4.3:31253874-31253893 None:intergenic 45.0%
AGTGCAAACATTGAAGGGGT+AGG + chr4.3:31252911-31252930 MS.gene031764:intron 45.0%
CCCCCGTCATAAATTGTCTA+TGG - chr4.3:31253511-31253530 None:intergenic 45.0%
CTCAACACTGAAGGAGATGA+AGG + chr4.3:31254211-31254230 MS.gene031764:CDS 45.0%
CTTCATCTCCTTCAGTGTTG+AGG - chr4.3:31254213-31254232 None:intergenic 45.0%
GAGAATTGGGAAAGCAAAGC+AGG + chr4.3:31252562-31252581 MS.gene031764:CDS 45.0%
GATACACATGCACGTGCAAA+AGG - chr4.3:31253040-31253059 None:intergenic 45.0%
GCAATGGCGTGTTTATATGG+TGG + chr4.3:31253557-31253576 MS.gene031764:intron 45.0%
GCTGCAATGGCGTGTTTATA+TGG + chr4.3:31253554-31253573 MS.gene031764:intron 45.0%
GCTGCTGGATACTCTTCATT+AGG + chr4.3:31254233-31254252 MS.gene031764:CDS 45.0%
GTCATGAACCACGATCATGT+GGG - chr4.3:31253873-31253892 None:intergenic 45.0%
TACCCCTTCAATGTTTGCAC+TGG - chr4.3:31252912-31252931 None:intergenic 45.0%
TGATGGCCTTTATGAGGGTT+TGG + chr4.3:31254178-31254197 MS.gene031764:CDS 45.0%
TTGGAGGCCAAGAGAAATTG+AGG + chr4.3:31252297-31252316 MS.gene031764:CDS 45.0%
! AAGGGTGATGGCCTTTATGA+GGG + chr4.3:31254173-31254192 MS.gene031764:CDS 45.0%
! GCTCCTCTCTAGAAAAGAAG+AGG - chr4.3:31254068-31254087 None:intergenic 45.0%
! TAAGGGTGATGGCCTTTATG+AGG + chr4.3:31254172-31254191 MS.gene031764:CDS 45.0%
! TTTCTAGAGAGGAGCGATGA+CGG + chr4.3:31254073-31254092 MS.gene031764:intron 45.0%
!! CATACACGGGTTGGAATCAA+TGG - chr4.3:31253607-31253626 None:intergenic 45.0%
!! GGAATCAATGGCGGATATGA+TGG - chr4.3:31253595-31253614 None:intergenic 45.0%
!! GTGGTTTAGGTTGTCATGCT+TGG + chr4.3:31251695-31251714 MS.gene031764:intron 45.0%
!! TCAATGGCGGATATGATGGA+AGG - chr4.3:31253591-31253610 None:intergenic 45.0%
!! TTGTTGGTGGTCTATTGGCA+GGG - chr4.3:31253172-31253191 None:intergenic 45.0%
AAACACGCCATTGCAGCCTA+TGG - chr4.3:31253551-31253570 None:intergenic 50.0%
ACCTGTGCACTTAAGGGTGA+TGG + chr4.3:31254161-31254180 MS.gene031764:CDS 50.0%
AGTCTGGACCGTGAGAGAAT+TGG + chr4.3:31252548-31252567 MS.gene031764:CDS 50.0%
CATCTCGGTATTGCCGAAGA+AGG - chr4.3:31251069-31251088 None:intergenic 50.0%
CTGGTTGTCCTCAACACTGA+AGG + chr4.3:31254202-31254221 MS.gene031764:CDS 50.0%
GCCTTTATGAGGGTTTGGAC+TGG + chr4.3:31254183-31254202 MS.gene031764:CDS 50.0%
GTCTGGACCGTGAGAGAATT+GGG + chr4.3:31252549-31252568 MS.gene031764:CDS 50.0%
TCTTCGGCAATACCGAGATG+CGG + chr4.3:31251069-31251088 MS.gene031764:CDS 50.0%
! ACAAGGCACCTGTGCACTTA+AGG + chr4.3:31254154-31254173 MS.gene031764:CDS 50.0%
! CAAGGCACCTGTGCACTTAA+GGG + chr4.3:31254155-31254174 MS.gene031764:CDS 50.0%
! TTCACGGTTTGGGATGTTGG+AGG + chr4.3:31252281-31252300 MS.gene031764:CDS 50.0%
!! ACACGGGTTGGAATCAATGG+CGG - chr4.3:31253604-31253623 None:intergenic 50.0%
!! AGGGAAGTGTGTGACGGATT+AGG + chr4.3:31254098-31254117 MS.gene031764:CDS 50.0%
!! ATGCTTGGTCTTGATGCTGC+TGG + chr4.3:31251710-31251729 MS.gene031764:CDS 50.0%
!! GTTGTTGGTGGTCTATTGGC+AGG - chr4.3:31253173-31253192 None:intergenic 50.0%
!! TGTTGGTGGTCTATTGGCAG+GGG - chr4.3:31253171-31253190 None:intergenic 50.0%
!!! GGAATGGCATGGCGGATTTT+TGG + chr4.3:31253478-31253497 MS.gene031764:intron 50.0%
CTGAAGGAGATGAAGGCTGC+TGG + chr4.3:31254218-31254237 MS.gene031764:CDS 55.0%
CTTCGGCAATACCGAGATGC+GGG + chr4.3:31251070-31251089 MS.gene031764:CDS 55.0%
GCCATCACCCTTAAGTGCAC+AGG - chr4.3:31254165-31254184 None:intergenic 55.0%
GGCAACACCATAGGCTGCAA+TGG + chr4.3:31253541-31253560 MS.gene031764:intron 55.0%
! ACGGCAAGGGAAGTGTGTGA+CGG + chr4.3:31254092-31254111 MS.gene031764:CDS 55.0%
! CATGCACGTGCAAAAGGTGC+AGG - chr4.3:31253034-31253053 None:intergenic 55.0%
!! AGCCTATGGTGTTGCCATGG+CGG - chr4.3:31253537-31253556 None:intergenic 55.0%
!! TGCAGCCTATGGTGTTGCCA+TGG - chr4.3:31253540-31253559 None:intergenic 55.0%
TCGGGGTTGGGTAGCTCAAC+TGG + chr4.3:31251537-31251556 MS.gene031764:intron 60.0%
! AGAGAGGAGCGATGACGGCA+AGG + chr4.3:31254078-31254097 MS.gene031764:intron 60.0%
! GAGAGGAGCGATGACGGCAA+GGG + chr4.3:31254079-31254098 MS.gene031764:intron 60.0%
!! GCCTATGGTGTTGCCATGGC+GGG - chr4.3:31253536-31253555 None:intergenic 60.0%
ATGGGACCATGGCGCTGCCA+TGG + chr4.3:31253454-31253473 MS.gene031764:intron 65.0%
ATTCCGCCATGGCAGCGCCA+TGG - chr4.3:31253463-31253482 None:intergenic 65.0%
GCCCGCCATGGCAACACCAT+AGG + chr4.3:31253532-31253551 MS.gene031764:intron 65.0%
TCCGCCATGCCATTCCGCCA+TGG - chr4.3:31253474-31253493 None:intergenic 65.0%
! ATGGCGCTGCCATGGCGGAA+TGG + chr4.3:31253462-31253481 MS.gene031764:intron 65.0%
! GCCATGGCGGAATGGCATGG+CGG + chr4.3:31253470-31253489 MS.gene031764:intron 65.0%
! GCTGCCATGGCGGAATGGCA+TGG + chr4.3:31253467-31253486 MS.gene031764:intron 65.0%
GGACCATGGCGCTGCCATGG+CGG + chr4.3:31253457-31253476 MS.gene031764:intron 70.0%
!! TATGACGGGGGTGCCCGCCA+TGG + chr4.3:31253520-31253539 MS.gene031764:intron 70.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 31251035 31254277 31251035 ID=MS.gene031764
chr4.3 mRNA 31251035 31254277 31251035 ID=MS.gene031764.t1;Parent=MS.gene031764
chr4.3 exon 31251035 31251091 31251035 ID=MS.gene031764.t1.exon1;Parent=MS.gene031764.t1
chr4.3 CDS 31251035 31251091 31251035 ID=cds.MS.gene031764.t1;Parent=MS.gene031764.t1
chr4.3 exon 31251704 31251794 31251704 ID=MS.gene031764.t1.exon2;Parent=MS.gene031764.t1
chr4.3 CDS 31251704 31251794 31251704 ID=cds.MS.gene031764.t1;Parent=MS.gene031764.t1
chr4.3 exon 31252243 31252358 31252243 ID=MS.gene031764.t1.exon3;Parent=MS.gene031764.t1
chr4.3 CDS 31252243 31252358 31252243 ID=cds.MS.gene031764.t1;Parent=MS.gene031764.t1
chr4.3 exon 31252533 31252592 31252533 ID=MS.gene031764.t1.exon4;Parent=MS.gene031764.t1
chr4.3 CDS 31252533 31252592 31252533 ID=cds.MS.gene031764.t1;Parent=MS.gene031764.t1
chr4.3 exon 31252687 31252752 31252687 ID=MS.gene031764.t1.exon5;Parent=MS.gene031764.t1
chr4.3 CDS 31252687 31252752 31252687 ID=cds.MS.gene031764.t1;Parent=MS.gene031764.t1
chr4.3 exon 31254080 31254277 31254080 ID=MS.gene031764.t1.exon6;Parent=MS.gene031764.t1
chr4.3 CDS 31254080 31254277 31254080 ID=cds.MS.gene031764.t1;Parent=MS.gene031764.t1
Gene Sequence

>MS.gene031764

ATGGGTCAAGCTTTTCGCAAACTCTTCGATTCCTTCTTCGGCAATACCGAGATGCGGGTAATCAAATTTTTTTTTTTTATCTCTTTTAATTTTTATTATAATAACAATAAATGCTGATGTTGTGCTTCATTATTTACTCATATCAATGATTAGTAGAGTTTTAATGTATGTTTGGGGTGCCAAGAATTGATTATGTAAAATTGATTTCGGCTAAAAGTGAGTTGAAGACAAAGTGATTTATGTTTGAATATATTATTATGTAAAAGTGAGCTGGTAAATAATCTTCAGTGTAAAAAGCAATTCTTGAATCAGAAGCTCCAATTTTTAGCTTCAAGTTTGAATCAATTCAGAAAAATAAAAATAAATCTACTCTGGAGCAACCAAATTTGTCAAAATTAATTCTACATTTCTAAAATCAAATTTAAATTCTCTAAAAGCTGAACTAATCACACACCAAATTGTTAATGTAGCTTTCTTTGTAATCAGCAATAATTCGATTATTTCGGGGTTGGGTAGCTCAACTGGTTTGAACTAAGGGATAAGGAGTTGGAGATTCAAGGAGAAAAAAAAAACTAACATAACAATTAACATACTAACACTTGTCATTAAAAAAAAGAAGCTATATTTTGATTATAATTCTTTTTTTCTTTCAAATTTGGTGTGGTTTAGGTTGTCATGCTTGGTCTTGATGCTGCTGGAAAAACAACTATATTGTACAAGCTTCACATTGGAGAAGTTTTATCTACTGTTCCTACAATTGGTGGGTTTTATTTCATAAACTCAATCATTAAGTTCATTGTTTTTTTGTTGAAATTTCTTAGAGATAGATCATAGATATCTTGTTATTTAATGCTAATAAAGTTGTGTTTGGTTATTATCGTTCAAGTGTTTTTAGCTCATGCTTGCTAATTATCTACTTGGTTGTTGTTTCTTTGACTGTTTAAATATGCTTGTGAGCGGAGTTCTTTTGTTACCCTCATGAATTCTGATGTTCTATGAAACTTTTTTTTGATGGAGTTGATTTTAGTTTGCACGATGAAACATTTTTTTCCCCCTCTGTAATTGTATTGCAAATATATGTGGTGGGTTTCTGTGAATTGAATGGATGCAAACATGATGGTGTTTTGGTTTAGCAGAACGAAAATTATAATTGGAAATAATCCACTGTTGTTTAAGCTTTGAGGCTTATAAGTTTGTATGCATTGCAGGTTTCAACGTAGAGAAAGTTCAGTATAAGAATGTTATTTTCACGGTTTGGGATGTTGGAGGCCAAGAGAAATTGAGGACACTTTGGAGGCACTATTTTAACAACACAGATGGTTTGGTAAGCATTGATTCTTGTGATTTTATGTGTTTTTCATATTGAAAACACAACTTGTGTCATTTGGTTTTGTAAAATTTTCCTTTTGCTACAATTATTCTTATATCCTATAGGACTGAAAAGTCAGGATATTGGGCTAATGTATCAAGGTTGATACATATGTGCATGTTTATGCAGATATATGTTGTTGATAGTCTGGACCGTGAGAGAATTGGGAAAGCAAAGCAGGAATTTCAGGTGATAAGCCCAAAAGCTTACAAATTAACACACACACACATACACAACATGTTATTCCAAACAGGCTTTGAATTGATCTATGGATTACTTGCAGACAATCATAAATGACCCGTTTATGCTCAACAGTGTCATCTTGGTACTTGCCAACAAACAAGACCTGGTATGTGTATCTTGATCTGTGCTCTACTTCTTCCATCTGAATGACCTATAACTTACACGTGTAAAGATGAAGTCAAAGTCAAATCATGTGAATTGGTTGTCAATTTTTGCTGAGTACTATTATAGTTAGCATAATGTGCCATAATTAATGCACATACCAGTGCAAACATTGAAGGGGTAGGCTTTATATCAGTCATTTAAATAGCTGTAATATATGGAATATGGTTCAAAGGTTAAGGATTTCTTTCCTCTTATAATGCTGGTTGTTACAAAAAAAATCCTGCACCTTTTGCACGTGCATGTGTATCTAAAGAAATCTATTTTTTCTCTATTTCAGTTTTTCCGTCTTGCAGTTTTCTGTTTTTCTTTTCACCCATCTGTGTAATTAGTCTGGTACTAAGTAGAAAAACTCTATTCCCCTGCCAATAGACCACCAACAACAAGAACCAAGTACAGTTGAAAATATTCATTATTTACTTACTGGCTGTTGACAATAGCCTTCACTATTTGTATATGTTGTCATTGTTGGATGATGCATGATACATCCAACAGATTGTGTCACTTGTGTTCTCCATGTGAACATTCTAAGTCAGTTCTGATCTTGTAGCAACTTCTTTAATTGATTTATTTTTTGCTTTCTTTCTGTTGTCTAAGTTAAAGGGAAGAAAACTTATTTTAGGACGATCTAACCAGTGTTGTTAAATGGGACCATGGCGCTGCCATGGCGGAATGGCATGGCGGATTTTTGGATAACCACCATAGACAATTTATGACGGGGGTGCCCGCCATGGCAACACCATAGGCTGCAATGGCGTGTTTATATGGTGGATGTTTGGCCTTCCATCATATCCGCCATTGATTCCAACCCGTGTATGTTTTTCAAATCTTGAGGGAGGTTAGTGTAACCTCATAATATAATTAGAAATTCAATTTCAAAGCACACAAGCAAGAACTTTTTTAAGCAAAAACGGTTTTCTTGTCTTCCCATCATTATGCTTGACCACAAAAAGTCTTGATACTAGTGAGACTTGAGTTTTGGTGGAATCTGTGACTTTTTGTATTGCACGTTCAAGTTCAATTCTTACTTGTACACCACTTGAATTCTTTATGTAATCTTTCCCACATGATCGTGGTTCATGACTGACACTGTTTTCGTTCCCAATATGTCAAATTTCATCAATGGTACTTCTATCTGTCTAAAAACACTTGCTCCTTTGTATGATTATGTATATCCTTGTATTGCTAGCTGATCACTCCTCTTCAATTAACTACTCCTAAGTTTGCCTTAATTTAGCTATAACTGCAAATGTTTTCCTCTTCTTTTCTAGAGAGGAGCGATGACGGCAAGGGAAGTGTGTGACGGATTAGGTCTCTTTGATCTAAAGAATAGAAAATGGCACATACAAGGCACCTGTGCACTTAAGGGTGATGGCCTTTATGAGGGTTTGGACTGGTTGTCCTCAACACTGAAGGAGATGAAGGCTGCTGGATACTCTTCATTAGGACTAGGAACTTCATCCTTCTAA

Protein sequence

>MS.gene031764.t1

MGQAFRKLFDSFFGNTEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRTLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQTIINDPFMLNSVILVLANKQDLRGAMTAREVCDGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLSSTLKEMKAAGYSSLGLGTSSF