Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44367.t1 | RWR79682.1 | 100 | 180 | 0 | 0 | 1 | 180 | 1 | 180 | 1.10E-97 | 365.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44367.t1 | P51823 | 99.4 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 7.4e-100 | 364.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44367.t1 | A0A1U7V2M3 | 100.0 | 180 | 0 | 0 | 1 | 180 | 1 | 180 | 7.6e-98 | 365.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44367.t1 | MTR_5g034130 | 100.000 | 180 | 0 | 0 | 1 | 180 | 1 | 180 | 1.19e-134 | 374 |
| MS.gene44367.t1 | MTR_5g034125 | 100.000 | 180 | 0 | 0 | 1 | 180 | 1 | 180 | 1.19e-134 | 374 |
| MS.gene44367.t1 | MTR_1g086480 | 99.444 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 3.46e-134 | 372 |
| MS.gene44367.t1 | MTR_6g005820 | 99.444 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 5.20e-134 | 372 |
| MS.gene44367.t1 | MTR_7g109960 | 98.889 | 180 | 2 | 0 | 1 | 180 | 1 | 180 | 1.46e-133 | 371 |
| MS.gene44367.t1 | MTR_5g016540 | 87.222 | 180 | 23 | 0 | 1 | 180 | 1 | 180 | 2.42e-120 | 337 |
| MS.gene44367.t1 | MTR_4g128910 | 63.277 | 177 | 65 | 0 | 1 | 177 | 1 | 177 | 3.24e-84 | 246 |
| MS.gene44367.t1 | MTR_5g007810 | 61.582 | 177 | 68 | 0 | 1 | 177 | 1 | 177 | 5.04e-83 | 243 |
| MS.gene44367.t1 | MTR_4g077640 | 60.452 | 177 | 70 | 0 | 1 | 177 | 1 | 177 | 2.67e-80 | 237 |
| MS.gene44367.t1 | MTR_5g007820 | 55.495 | 182 | 79 | 1 | 1 | 180 | 1 | 182 | 2.79e-75 | 224 |
| MS.gene44367.t1 | MTR_1g076550 | 51.667 | 180 | 87 | 0 | 1 | 180 | 1 | 180 | 6.24e-67 | 202 |
| MS.gene44367.t1 | MTR_5g007840 | 42.723 | 213 | 77 | 2 | 1 | 180 | 1 | 201 | 8.61e-57 | 177 |
| MS.gene44367.t1 | MTR_8g077540 | 48.485 | 165 | 82 | 3 | 18 | 180 | 17 | 180 | 1.02e-49 | 159 |
| MS.gene44367.t1 | MTR_8g077540 | 48.485 | 165 | 82 | 3 | 18 | 180 | 43 | 206 | 1.47e-49 | 159 |
| MS.gene44367.t1 | MTR_2g022200 | 34.831 | 178 | 105 | 2 | 5 | 173 | 5 | 180 | 4.64e-37 | 127 |
| MS.gene44367.t1 | MTR_5g078090 | 34.091 | 176 | 113 | 2 | 1 | 173 | 1 | 176 | 8.78e-31 | 110 |
| MS.gene44367.t1 | MTR_5g015370 | 32.240 | 183 | 121 | 2 | 1 | 180 | 1 | 183 | 8.25e-30 | 108 |
| MS.gene44367.t1 | MTR_8g077540 | 51.020 | 98 | 46 | 2 | 18 | 114 | 17 | 113 | 1.81e-28 | 103 |
| MS.gene44367.t1 | MTR_4g026950 | 31.847 | 157 | 106 | 1 | 18 | 173 | 1 | 157 | 5.09e-26 | 97.8 |
| MS.gene44367.t1 | MTR_2g034640 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 9.15e-25 | 95.5 |
| MS.gene44367.t1 | MTR_7g112090 | 31.073 | 177 | 106 | 2 | 15 | 177 | 18 | 192 | 2.47e-24 | 94.4 |
| MS.gene44367.t1 | MTR_4g121860 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 7.41e-23 | 90.5 |
| MS.gene44367.t1 | MTR_1g062760 | 34.118 | 85 | 52 | 1 | 18 | 98 | 15 | 99 | 2.64e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44367.t1 | AT5G14670 | 98.889 | 180 | 2 | 0 | 1 | 180 | 1 | 180 | 5.83e-133 | 369 |
| MS.gene44367.t1 | AT5G14670 | 98.889 | 180 | 2 | 0 | 1 | 180 | 1 | 180 | 5.83e-133 | 369 |
| MS.gene44367.t1 | AT1G10630 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 7.66e-133 | 369 |
| MS.gene44367.t1 | AT1G10630 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 7.66e-133 | 369 |
| MS.gene44367.t1 | AT3G62290 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 1.10e-132 | 369 |
| MS.gene44367.t1 | AT3G62290 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 1.10e-132 | 369 |
| MS.gene44367.t1 | AT3G62290 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 1.10e-132 | 369 |
| MS.gene44367.t1 | AT5G14670 | 98.889 | 180 | 2 | 0 | 1 | 180 | 1 | 180 | 1.41e-132 | 369 |
| MS.gene44367.t1 | AT2G47170 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 1.78e-132 | 368 |
| MS.gene44367.t1 | AT2G47170 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 1.78e-132 | 368 |
| MS.gene44367.t1 | AT2G47170 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 1.78e-132 | 368 |
| MS.gene44367.t1 | AT1G70490 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 1.78e-132 | 368 |
| MS.gene44367.t1 | AT1G70490 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 1.78e-132 | 368 |
| MS.gene44367.t1 | AT1G70490 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 1.78e-132 | 368 |
| MS.gene44367.t1 | AT1G70490 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 1.78e-132 | 368 |
| MS.gene44367.t1 | AT1G70490 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 1.78e-132 | 368 |
| MS.gene44367.t1 | AT1G70490 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 1.78e-132 | 368 |
| MS.gene44367.t1 | AT1G23490 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 1.78e-132 | 368 |
| MS.gene44367.t1 | AT1G70490 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 1.78e-132 | 368 |
| MS.gene44367.t1 | AT2G15310 | 67.778 | 180 | 58 | 0 | 1 | 180 | 1 | 180 | 3.03e-91 | 265 |
| MS.gene44367.t1 | AT2G24765 | 62.147 | 177 | 67 | 0 | 1 | 177 | 1 | 177 | 1.48e-84 | 247 |
| MS.gene44367.t1 | AT5G17060 | 58.659 | 179 | 74 | 0 | 1 | 179 | 1 | 179 | 3.10e-81 | 239 |
| MS.gene44367.t1 | AT5G17060 | 58.659 | 179 | 74 | 0 | 1 | 179 | 1 | 179 | 3.10e-81 | 239 |
| MS.gene44367.t1 | AT3G03120 | 60.452 | 177 | 70 | 0 | 1 | 177 | 1 | 177 | 4.96e-81 | 238 |
| MS.gene44367.t1 | AT3G22950 | 52.778 | 180 | 85 | 0 | 1 | 180 | 1 | 180 | 5.35e-70 | 210 |
| MS.gene44367.t1 | AT3G22950 | 52.778 | 180 | 85 | 0 | 1 | 180 | 1 | 180 | 5.35e-70 | 210 |
| MS.gene44367.t1 | AT2G24765 | 64.844 | 128 | 45 | 0 | 1 | 128 | 1 | 128 | 1.04e-60 | 185 |
| MS.gene44367.t1 | AT3G03120 | 63.077 | 130 | 48 | 0 | 1 | 130 | 1 | 130 | 5.62e-60 | 183 |
| MS.gene44367.t1 | AT1G02430 | 48.936 | 188 | 82 | 5 | 1 | 176 | 1 | 186 | 9.06e-57 | 177 |
| MS.gene44367.t1 | AT1G02440 | 46.237 | 186 | 90 | 4 | 1 | 176 | 1 | 186 | 7.19e-56 | 175 |
| MS.gene44367.t1 | AT2G18390 | 48.485 | 165 | 82 | 3 | 18 | 180 | 17 | 180 | 3.54e-49 | 157 |
| MS.gene44367.t1 | AT1G02430 | 47.205 | 161 | 75 | 4 | 1 | 153 | 1 | 159 | 4.75e-45 | 146 |
| MS.gene44367.t1 | AT5G52210 | 34.091 | 176 | 109 | 1 | 5 | 173 | 5 | 180 | 7.56e-36 | 124 |
| MS.gene44367.t1 | AT5G52210 | 34.091 | 176 | 109 | 1 | 5 | 173 | 5 | 180 | 7.56e-36 | 124 |
| MS.gene44367.t1 | AT3G49870 | 34.091 | 176 | 113 | 2 | 1 | 173 | 1 | 176 | 2.88e-32 | 114 |
| MS.gene44367.t1 | AT5G67560 | 33.742 | 163 | 107 | 1 | 12 | 173 | 14 | 176 | 2.34e-31 | 112 |
| MS.gene44367.t1 | AT5G37680 | 33.742 | 163 | 107 | 1 | 12 | 173 | 14 | 176 | 4.16e-30 | 108 |
| MS.gene44367.t1 | AT3G49870 | 33.121 | 157 | 104 | 1 | 18 | 173 | 1 | 157 | 4.32e-29 | 105 |
| MS.gene44367.t1 | AT3G49860 | 32.530 | 166 | 111 | 1 | 16 | 180 | 10 | 175 | 2.61e-28 | 104 |
| MS.gene44367.t1 | AT1G02440 | 33.766 | 154 | 66 | 3 | 1 | 153 | 1 | 119 | 1.27e-26 | 98.2 |
| MS.gene44367.t1 | AT1G09180 | 32.961 | 179 | 104 | 2 | 13 | 177 | 16 | 192 | 2.44e-25 | 97.1 |
| MS.gene44367.t1 | AT3G62560 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 1.42e-24 | 95.1 |
| MS.gene44367.t1 | AT5G37680 | 32.812 | 128 | 86 | 0 | 46 | 173 | 2 | 129 | 4.62e-24 | 92.0 |
| MS.gene44367.t1 | AT4G02080 | 31.073 | 177 | 106 | 2 | 15 | 177 | 18 | 192 | 4.70e-24 | 93.6 |
| MS.gene44367.t1 | AT1G56330 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 5.07e-24 | 93.6 |
Find 53 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAACAGATTATTACCTTAT+TGG | 0.220363 | 5.1:+25026392 | None:intergenic |
| ACCCAACTTGTCAGTAATTT+CGG | 0.318172 | 5.1:+25026597 | None:intergenic |
| CAGAGCACCTGTGCAACTTC+CGG | 0.333413 | 5.1:-25026459 | MS.gene44367:CDS |
| ATATAAGACCCTGAGTGTTC+TGG | 0.338828 | 5.1:+25027124 | None:intergenic |
| TTCCAACAACATAGCCAATA+AGG | 0.351695 | 5.1:-25026406 | None:intergenic |
| TACCTTATTGGCTATGTTGT+TGG | 0.353173 | 5.1:+25026404 | None:intergenic |
| GAACATTAGCTTCACCGTTT+GGG | 0.382427 | 5.1:-25027317 | MS.gene44367:CDS |
| TCGGCAGCATTCATTGCATT+TGG | 0.390949 | 5.1:+25026616 | None:intergenic |
| AGAACATTAGCTTCACCGTT+TGG | 0.392481 | 5.1:-25027318 | MS.gene44367:CDS |
| AGAGCACCTGTGCAACTTCC+GGG | 0.403911 | 5.1:-25026458 | MS.gene44367:CDS |
| CGGAAGTTGCACAGGTGCTC+TGG | 0.408972 | 5.1:+25026460 | None:intergenic |
| AGCTTCACCGTTTGGGATGT+TGG | 0.428276 | 5.1:-25027310 | MS.gene44367:CDS |
| CAGTCGGTTATTCGCGAAGA+AGG | 0.434991 | 5.1:-25028567 | MS.gene44367:CDS |
| ATCCTTTACAAGCTCAAGCT+TGG | 0.444376 | 5.1:-25028497 | MS.gene44367:CDS |
| GGAGGGTCTCTATGAAGGTT+TGG | 0.453032 | 5.1:-25026436 | MS.gene44367:CDS |
| ACCTGTGCAACTTCCGGGGA+GGG | 0.478989 | 5.1:-25026453 | MS.gene44367:CDS |
| ATTTGGAAGATCTTGTTTGT+TGG | 0.480982 | 5.1:+25026633 | None:intergenic |
| CATCCTATGTAACTCATCTC+TGG | 0.482324 | 5.1:+25027062 | None:intergenic |
| TCCGGGGAGGGTCTCTATGA+AGG | 0.482624 | 5.1:-25026441 | MS.gene44367:CDS |
| ACCCTCCCCGGAAGTTGCAC+AGG | 0.491238 | 5.1:+25026452 | None:intergenic |
| TGCCGAAATTACTGACAAGT+TGG | 0.496529 | 5.1:-25026599 | MS.gene44367:CDS |
| GTCTCTATGAAGGTTTGGAC+TGG | 0.504629 | 5.1:-25026431 | MS.gene44367:CDS |
| TTGTCGTGGACAGCAATGAC+AGG | 0.508893 | 5.1:-25027101 | MS.gene44367:CDS |
| CTCCAAGCTTGAGCTTGTAA+AGG | 0.521573 | 5.1:+25028495 | None:intergenic |
| ACTCTCTGAGACAGCGCCAC+TGG | 0.541563 | 5.1:-25026570 | MS.gene44367:intron |
| ACCTTCATAGAGACCCTCCC+CGG | 0.544592 | 5.1:+25026440 | None:intergenic |
| ATGGTTGGTCTCGATGCGGC+TGG | 0.544748 | 5.1:-25028530 | MS.gene44367:CDS |
| TTCACCGTTTGGGATGTTGG+AGG | 0.546724 | 5.1:-25027307 | MS.gene44367:CDS |
| GCCGAAATTACTGACAAGTT+GGG | 0.549280 | 5.1:-25026598 | MS.gene44367:CDS |
| CATTCACAAAGCTGTTCAGT+CGG | 0.551165 | 5.1:-25028583 | MS.gene44367:CDS |
| GAAGGAAATGCGAATTCTGA+TGG | 0.554686 | 5.1:-25028549 | MS.gene44367:CDS |
| CTTACCAATGGTAGGGATGG+TGG | 0.573307 | 5.1:+25028463 | None:intergenic |
| GTCACCACCATCCCTACCAT+TGG | 0.577538 | 5.1:-25028467 | MS.gene44367:intron |
| AAGCCAGAGATGAGTTACAT+AGG | 0.581634 | 5.1:-25027065 | MS.gene44367:CDS |
| TTGGCCTCCAACATCCCAAA+CGG | 0.582161 | 5.1:+25027303 | None:intergenic |
| GAAATGCGAATTCTGATGGT+TGG | 0.586975 | 5.1:-25028545 | MS.gene44367:CDS |
| AAGCTTGAGCTTGTAAAGGA+TGG | 0.590971 | 5.1:+25028499 | None:intergenic |
| ACAGAAACTTACCAATGGTA+GGG | 0.591759 | 5.1:+25028456 | None:intergenic |
| TACAGATTCGTCCACTGTGG+AGG | 0.592923 | 5.1:-25027155 | MS.gene44367:intron |
| GCACTACTTCCAGAACACTC+AGG | 0.597040 | 5.1:-25027133 | MS.gene44367:CDS |
| AAACTTACCAATGGTAGGGA+TGG | 0.599979 | 5.1:+25028460 | None:intergenic |
| TCAGGGTCTTATATTTGTCG+TGG | 0.605136 | 5.1:-25027115 | MS.gene44367:CDS |
| CACTACTTCCAGAACACTCA+GGG | 0.606230 | 5.1:-25027132 | MS.gene44367:CDS |
| CTTGAGCTTGTAAAGGATGG+TGG | 0.615400 | 5.1:+25028502 | None:intergenic |
| AGGGTTCAATGTGGAAACTG+TGG | 0.615557 | 5.1:-25027347 | MS.gene44367:CDS |
| GAGCACCTGTGCAACTTCCG+GGG | 0.617937 | 5.1:-25026457 | MS.gene44367:CDS |
| GTTACATAGGATGTTGAATG+AGG | 0.618955 | 5.1:-25027052 | MS.gene44367:intron |
| GGATGTTGGAGGCCAAGACA+AGG | 0.624916 | 5.1:-25027296 | MS.gene44367:intron |
| CACCTGTGCAACTTCCGGGG+AGG | 0.625313 | 5.1:-25026454 | MS.gene44367:CDS |
| AACAGAAACTTACCAATGGT+AGG | 0.627334 | 5.1:+25028455 | None:intergenic |
| TGTCGTGGACAGCAATGACA+GGG | 0.675280 | 5.1:-25027100 | MS.gene44367:CDS |
| TCTGATGGTTGGTCTCGATG+CGG | 0.691288 | 5.1:-25028534 | MS.gene44367:CDS |
| TGGAAGTAGTGCCTCCACAG+TGG | 0.702478 | 5.1:+25027144 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTCATTAACTTTTAT+TGG | - | chr5.1:25027054-25027073 | MS.gene44367:CDS | 10.0% |
| !!! | GTAATTTTTAAATTTAAGAA+TGG | - | chr5.1:25027170-25027189 | MS.gene44367:intron | 10.0% |
| !!! | TTATTTATTGATTTGTTTTA+GGG | - | chr5.1:25027634-25027653 | MS.gene44367:intron | 10.0% |
| !!! | TTTATTTATTGATTTGTTTT+AGG | - | chr5.1:25027633-25027652 | MS.gene44367:intron | 10.0% |
| !!! | TTTATTTTAATTATCTTTTC+AGG | - | chr5.1:25028311-25028330 | MS.gene44367:intron | 10.0% |
| !!! | ACAACATTTTATACTAAATA+GGG | + | chr5.1:25027384-25027403 | None:intergenic | 15.0% |
| !!! | TAACTTTATTTGACTTATTT+TGG | - | chr5.1:25027976-25027995 | MS.gene44367:intron | 15.0% |
| !!! | TATAAATTGAAGTTATTTCT+TGG | + | chr5.1:25027016-25027035 | None:intergenic | 15.0% |
| !! | AAAAAAACTAACCATAAGAA+AGG | - | chr5.1:25027221-25027240 | MS.gene44367:intron | 20.0% |
| !! | AGACAAAATACTAAATGAAT+GGG | + | chr5.1:25027084-25027103 | None:intergenic | 20.0% |
| !! | AGATAACTTTAATCTATGTT+TGG | + | chr5.1:25026734-25026753 | None:intergenic | 20.0% |
| !! | GAATTTCATTGATAAGATAA+TGG | - | chr5.1:25027124-25027143 | MS.gene44367:CDS | 20.0% |
| !! | TAGACAAAATACTAAATGAA+TGG | + | chr5.1:25027085-25027104 | None:intergenic | 20.0% |
| !!! | CTATTTTTCATTAATGTAAG+TGG | - | chr5.1:25027102-25027121 | MS.gene44367:CDS | 20.0% |
| !!! | CTTATGGTTAGTTTTTTTAA+AGG | + | chr5.1:25027219-25027238 | None:intergenic | 20.0% |
| !!! | GACAACATTTTATACTAAAT+AGG | + | chr5.1:25027385-25027404 | None:intergenic | 20.0% |
| ! | AAAATACTAAATGAATGGGT+GGG | + | chr5.1:25027080-25027099 | None:intergenic | 25.0% |
| ! | AAGTAATATTGTAGTTGTTG+AGG | + | chr5.1:25027507-25027526 | None:intergenic | 25.0% |
| ! | AATATGTGTTTGTTCAGTAT+TGG | - | chr5.1:25026597-25026616 | MS.gene44367:CDS | 25.0% |
| ! | ACAATTATCAGAGATATGTT+CGG | + | chr5.1:25027789-25027808 | None:intergenic | 25.0% |
| ! | GTAAATTGCATCTAAACATA+AGG | + | chr5.1:25027747-25027766 | None:intergenic | 25.0% |
| ! | TAAAATGACCAACATACTTT+GGG | + | chr5.1:25026930-25026949 | None:intergenic | 25.0% |
| ! | TACATGTTTGATATCATAGT+GGG | - | chr5.1:25026627-25026646 | MS.gene44367:CDS | 25.0% |
| ! | TCTATGTTTGGTATAATAGT+CGG | + | chr5.1:25026722-25026741 | None:intergenic | 25.0% |
| !!! | TGTATTTTGTTGTGCATATT+AGG | - | chr5.1:25028110-25028129 | MS.gene44367:intron | 25.0% |
| AAACAAGCATATACGAACTA+AGG | + | chr5.1:25026973-25026992 | None:intergenic | 30.0% | |
| AACAAGCATATACGAACTAA+GGG | + | chr5.1:25026972-25026991 | None:intergenic | 30.0% | |
| AACTAACCATAAGAAAGGAA+TGG | - | chr5.1:25027226-25027245 | MS.gene44367:intron | 30.0% | |
| ATCATCAAAATACTTACCAG+TGG | + | chr5.1:25028449-25028468 | None:intergenic | 30.0% | |
| ATGCTCCTATGACAAATTTA+GGG | - | chr5.1:25028041-25028060 | MS.gene44367:intron | 30.0% | |
| CAAAAATTTACACCTTGTCT+TGG | + | chr5.1:25027719-25027738 | None:intergenic | 30.0% | |
| CAAAATACTAAATGAATGGG+TGG | + | chr5.1:25027081-25027100 | None:intergenic | 30.0% | |
| CAAATATGAATGTGAAGACA+TGG | + | chr5.1:25028011-25028030 | None:intergenic | 30.0% | |
| CTAAAATGACCAACATACTT+TGG | + | chr5.1:25026931-25026950 | None:intergenic | 30.0% | |
| CTACATGTTTGATATCATAG+TGG | - | chr5.1:25026626-25026645 | MS.gene44367:CDS | 30.0% | |
| GCCAAGAACTCAATTATATA+TGG | + | chr5.1:25026782-25026801 | None:intergenic | 30.0% | |
| GCCATATATAATTGAGTTCT+TGG | - | chr5.1:25026778-25026797 | MS.gene44367:intron | 30.0% | |
| TAGGTTTGTCAAAGTCAATA+TGG | - | chr5.1:25026676-25026695 | MS.gene44367:intron | 30.0% | |
| TAGTAACAGAAACTTACCAA+TGG | + | chr5.1:25026552-25026571 | None:intergenic | 30.0% | |
| TTTGACAATGCTTTCTATGA+TGG | - | chr5.1:25027526-25027545 | MS.gene44367:intron | 30.0% | |
| ! | ATTTGGAAGATCTTGTTTGT+TGG | + | chr5.1:25028370-25028389 | None:intergenic | 30.0% |
| ! | TGAGATCTAAAATACTCTTC+TGG | - | chr5.1:25028502-25028521 | MS.gene44367:CDS | 30.0% |
| !! | TGCTTTCTATGATGGATTAT+TGG | - | chr5.1:25027534-25027553 | MS.gene44367:intron | 30.0% |
| !!! | ATTTGTTTTAGGGTTCAATG+TGG | - | chr5.1:25027644-25027663 | MS.gene44367:intron | 30.0% |
| AACAACACAGTATAGACATC+AGG | + | chr5.1:25027278-25027297 | None:intergenic | 35.0% | |
| AACAGAAACTTACCAATGGT+AGG | + | chr5.1:25026548-25026567 | None:intergenic | 35.0% | |
| ACAGAAACTTACCAATGGTA+GGG | + | chr5.1:25026547-25026566 | None:intergenic | 35.0% | |
| ACCCAACTTGTCAGTAATTT+CGG | + | chr5.1:25028406-25028425 | None:intergenic | 35.0% | |
| AGCAAACCACTATTGTTCTA+CGG | - | chr5.1:25027352-25027371 | MS.gene44367:intron | 35.0% | |
| ATAATTGTCTTCGAAGTCAG+TGG | - | chr5.1:25027801-25027820 | MS.gene44367:intron | 35.0% | |
| CCAGTTCTTGTAAATTTCCT+AGG | - | chr5.1:25028143-25028162 | MS.gene44367:intron | 35.0% | |
| CCTAGGAAATTTACAAGAAC+TGG | + | chr5.1:25028146-25028165 | None:intergenic | 35.0% | |
| CTCAAGATTCCAATCAATAC+TGG | + | chr5.1:25028486-25028505 | None:intergenic | 35.0% | |
| GAGTTCCCTAAATTTGTCAT+AGG | + | chr5.1:25028049-25028068 | None:intergenic | 35.0% | |
| GATGCTCCTATGACAAATTT+AGG | - | chr5.1:25028040-25028059 | MS.gene44367:intron | 35.0% | |
| GCTATACTGCTATAGTGTAA+TGG | - | chr5.1:25027323-25027342 | MS.gene44367:CDS | 35.0% | |
| GTTACATAGGATGTTGAATG+AGG | - | chr5.1:25027948-25027967 | MS.gene44367:intron | 35.0% | |
| TAACCATAAGAAAGGAATGG+AGG | - | chr5.1:25027229-25027248 | MS.gene44367:intron | 35.0% | |
| TATCAACCGTAGAACAATAG+TGG | + | chr5.1:25027361-25027380 | None:intergenic | 35.0% | |
| TCAAAGATCACTGAGGTAAT+TGG | + | chr5.1:25026804-25026823 | None:intergenic | 35.0% | |
| TTCCATTTCAAAGATCACTG+AGG | + | chr5.1:25026811-25026830 | None:intergenic | 35.0% | |
| ! | TACCTCAGTGATCTTTGAAA+TGG | - | chr5.1:25026806-25026825 | MS.gene44367:intron | 35.0% |
| !! | TGTAGTTGTTGAGGAGTATT+TGG | + | chr5.1:25027498-25027517 | None:intergenic | 35.0% |
| !! | TTAGAAGCACTAAACATCCT+AGG | + | chr5.1:25028163-25028182 | None:intergenic | 35.0% |
| AAACTTACCAATGGTAGGGA+TGG | + | chr5.1:25026543-25026562 | None:intergenic | 40.0% | |
| AAGCCAGAGATGAGTTACAT+AGG | - | chr5.1:25027935-25027954 | MS.gene44367:intron | 40.0% | |
| AAGCTTGAGCTTGTAAAGGA+TGG | + | chr5.1:25026504-25026523 | None:intergenic | 40.0% | |
| ACTATGACACCAAATATGCC+TGG | + | chr5.1:25026657-25026676 | None:intergenic | 40.0% | |
| ATATAAGACCCTGAGTGTTC+TGG | + | chr5.1:25027879-25027898 | None:intergenic | 40.0% | |
| ATCCTTTACAAGCTCAAGCT+TGG | - | chr5.1:25026503-25026522 | MS.gene44367:intron | 40.0% | |
| ATGTGAAGACATGGCATCAA+AGG | + | chr5.1:25028002-25028021 | None:intergenic | 40.0% | |
| CATCCTATGTAACTCATCTC+TGG | + | chr5.1:25027941-25027960 | None:intergenic | 40.0% | |
| CATTCACAAAGCTGTTCAGT+CGG | - | chr5.1:25026417-25026436 | MS.gene44367:CDS | 40.0% | |
| CTTCCTCCATTCCTTTCTTA+TGG | + | chr5.1:25027235-25027254 | None:intergenic | 40.0% | |
| GAAATGCGAATTCTGATGGT+TGG | - | chr5.1:25026455-25026474 | MS.gene44367:CDS | 40.0% | |
| GAAGGAAATGCGAATTCTGA+TGG | - | chr5.1:25026451-25026470 | MS.gene44367:CDS | 40.0% | |
| GCCGAAATTACTGACAAGTT+GGG | - | chr5.1:25028402-25028421 | MS.gene44367:intron | 40.0% | |
| TCGTGGATAGCAGAAAATAG+TGG | + | chr5.1:25027462-25027481 | None:intergenic | 40.0% | |
| TGCCGAAATTACTGACAAGT+TGG | - | chr5.1:25028401-25028420 | MS.gene44367:intron | 40.0% | |
| ! | AGAACATTAGCTTCACCGTT+TGG | - | chr5.1:25027682-25027701 | MS.gene44367:intron | 40.0% |
| ! | ATACGAACTAAGGGAGTACA+TGG | + | chr5.1:25026963-25026982 | None:intergenic | 40.0% |
| ! | GAACATTAGCTTCACCGTTT+GGG | - | chr5.1:25027683-25027702 | MS.gene44367:intron | 40.0% |
| ! | TCAGGGTCTTATATTTGTCG+TGG | - | chr5.1:25027885-25027904 | MS.gene44367:intron | 40.0% |
| ! | TCTGAGATCCCAAAGTATGT+TGG | - | chr5.1:25026919-25026938 | MS.gene44367:intron | 40.0% |
| ! | TTGGAAAGTGTAGTCAATCG+TGG | + | chr5.1:25027479-25027498 | None:intergenic | 40.0% |
| ! | TTTTACAGATTCGTCCACTG+TGG | - | chr5.1:25027842-25027861 | MS.gene44367:intron | 40.0% |
| !! | AATACTCTTCTGGTTCTTCC+AGG | - | chr5.1:25028512-25028531 | MS.gene44367:CDS | 40.0% |
| !! | GGCATATTTGGTGTCATAGT+AGG | - | chr5.1:25026657-25026676 | MS.gene44367:CDS | 40.0% |
| AATATGGCTCGCTGTGATTC+TGG | - | chr5.1:25026692-25026711 | MS.gene44367:intron | 45.0% | |
| AGGGTTCAATGTGGAAACTG+TGG | - | chr5.1:25027653-25027672 | MS.gene44367:intron | 45.0% | |
| CACTACTTCCAGAACACTCA+GGG | - | chr5.1:25027868-25027887 | MS.gene44367:intron | 45.0% | |
| CTCCAAGCTTGAGCTTGTAA+AGG | + | chr5.1:25026508-25026527 | None:intergenic | 45.0% | |
| CTTGAGCTTGTAAAGGATGG+TGG | + | chr5.1:25026501-25026520 | None:intergenic | 45.0% | |
| GCTATAGCACTAGTGTGTAG+TGG | - | chr5.1:25027424-25027443 | MS.gene44367:intron | 45.0% | |
| GTCTCTATGAAGGTTTGGAC+TGG | - | chr5.1:25028569-25028588 | MS.gene44367:CDS | 45.0% | |
| TCGGCAGCATTCATTGCATT+TGG | + | chr5.1:25028387-25028406 | None:intergenic | 45.0% | |
| ! | ACTAAGGGAGTACATGGCAT+TGG | + | chr5.1:25026957-25026976 | None:intergenic | 45.0% |
| ! | GATATCATAGTGGGAATGCC+AGG | - | chr5.1:25026636-25026655 | MS.gene44367:CDS | 45.0% |
| !! | GCTTCGTGTCCAGTATTGAT+TGG | - | chr5.1:25028474-25028493 | MS.gene44367:CDS | 45.0% |
| CAGTCGGTTATTCGCGAAGA+AGG | - | chr5.1:25026433-25026452 | MS.gene44367:CDS | 50.0% | |
| CTTACCAATGGTAGGGATGG+TGG | + | chr5.1:25026540-25026559 | None:intergenic | 50.0% | |
| GCACTACTTCCAGAACACTC+AGG | - | chr5.1:25027867-25027886 | MS.gene44367:intron | 50.0% | |
| GGAGGGTCTCTATGAAGGTT+TGG | - | chr5.1:25028564-25028583 | MS.gene44367:CDS | 50.0% | |
| GTGGGAATGCCAGGCATATT+TGG | - | chr5.1:25026645-25026664 | MS.gene44367:CDS | 50.0% | |
| TACAGATTCGTCCACTGTGG+AGG | - | chr5.1:25027845-25027864 | MS.gene44367:intron | 50.0% | |
| TGTCGTGGACAGCAATGACA+GGG | - | chr5.1:25027900-25027919 | MS.gene44367:intron | 50.0% | |
| TTGGCCTCCAACATCCCAAA+CGG | + | chr5.1:25027700-25027719 | None:intergenic | 50.0% | |
| TTGTCGTGGACAGCAATGAC+AGG | - | chr5.1:25027899-25027918 | MS.gene44367:intron | 50.0% | |
| ! | AGCTTCACCGTTTGGGATGT+TGG | - | chr5.1:25027690-25027709 | MS.gene44367:intron | 50.0% |
| ! | TTCACCGTTTGGGATGTTGG+AGG | - | chr5.1:25027693-25027712 | MS.gene44367:intron | 50.0% |
| !! | TCTGATGGTTGGTCTCGATG+CGG | - | chr5.1:25026466-25026485 | MS.gene44367:CDS | 50.0% |
| ACCTTCATAGAGACCCTCCC+CGG | + | chr5.1:25028563-25028582 | None:intergenic | 55.0% | |
| GGATGTTGGAGGCCAAGACA+AGG | - | chr5.1:25027704-25027723 | MS.gene44367:intron | 55.0% | |
| GTCACCACCATCCCTACCAT+TGG | - | chr5.1:25026533-25026552 | MS.gene44367:intron | 55.0% | |
| TGGAAGTAGTGCCTCCACAG+TGG | + | chr5.1:25027859-25027878 | None:intergenic | 55.0% | |
| ! | ACAGGTGCTCTGGATGTACC+TGG | + | chr5.1:25028533-25028552 | None:intergenic | 55.0% |
| ! | AGAGCACCTGTGCAACTTCC+GGG | - | chr5.1:25028542-25028561 | MS.gene44367:CDS | 55.0% |
| ! | CAGAGCACCTGTGCAACTTC+CGG | - | chr5.1:25028541-25028560 | MS.gene44367:CDS | 55.0% |
| ACCTGTGCAACTTCCGGGGA+GGG | - | chr5.1:25028547-25028566 | MS.gene44367:CDS | 60.0% | |
| CGGAAGTTGCACAGGTGCTC+TGG | + | chr5.1:25028543-25028562 | None:intergenic | 60.0% | |
| GAGCACCTGTGCAACTTCCG+GGG | - | chr5.1:25028543-25028562 | MS.gene44367:CDS | 60.0% | |
| TCCGGGGAGGGTCTCTATGA+AGG | - | chr5.1:25028559-25028578 | MS.gene44367:CDS | 60.0% | |
| !! | ACTCTCTGAGACAGCGCCAC+TGG | - | chr5.1:25028430-25028449 | MS.gene44367:intron | 60.0% |
| !! | ATGGTTGGTCTCGATGCGGC+TGG | - | chr5.1:25026470-25026489 | MS.gene44367:intron | 60.0% |
| ACCCTCCCCGGAAGTTGCAC+AGG | + | chr5.1:25028551-25028570 | None:intergenic | 65.0% | |
| CACCTGTGCAACTTCCGGGG+AGG | - | chr5.1:25028546-25028565 | MS.gene44367:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 25026407 | 25028615 | 25026407 | ID=MS.gene44367 |
| chr5.1 | mRNA | 25026407 | 25028615 | 25026407 | ID=MS.gene44367.t1;Parent=MS.gene44367 |
| chr5.1 | exon | 25028468 | 25028615 | 25028468 | ID=MS.gene44367.t1.exon1;Parent=MS.gene44367.t1 |
| chr5.1 | CDS | 25028468 | 25028615 | 25028468 | ID=cds.MS.gene44367.t1;Parent=MS.gene44367.t1 |
| chr5.1 | exon | 25027297 | 25027367 | 25027297 | ID=MS.gene44367.t1.exon2;Parent=MS.gene44367.t1 |
| chr5.1 | CDS | 25027297 | 25027367 | 25027297 | ID=cds.MS.gene44367.t1;Parent=MS.gene44367.t1 |
| chr5.1 | exon | 25027053 | 25027172 | 25027053 | ID=MS.gene44367.t1.exon3;Parent=MS.gene44367.t1 |
| chr5.1 | CDS | 25027053 | 25027172 | 25027053 | ID=cds.MS.gene44367.t1;Parent=MS.gene44367.t1 |
| chr5.1 | exon | 25026571 | 25026689 | 25026571 | ID=MS.gene44367.t1.exon4;Parent=MS.gene44367.t1 |
| chr5.1 | CDS | 25026571 | 25026689 | 25026571 | ID=cds.MS.gene44367.t1;Parent=MS.gene44367.t1 |
| chr5.1 | exon | 25026407 | 25026488 | 25026407 | ID=MS.gene44367.t1.exon5;Parent=MS.gene44367.t1 |
| chr5.1 | CDS | 25026407 | 25026488 | 25026407 | ID=cds.MS.gene44367.t1;Parent=MS.gene44367.t1 |
| Gene Sequence |
| Protein sequence |
