Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44365.t1 | RWR79682.1 | 100 | 180 | 0 | 0 | 1 | 180 | 1 | 180 | 1.10E-97 | 365.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44365.t1 | P51823 | 99.4 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 7.4e-100 | 364.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44365.t1 | A0A1U7V2M3 | 100.0 | 180 | 0 | 0 | 1 | 180 | 1 | 180 | 7.6e-98 | 365.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44365.t1 | MTR_5g034130 | 100.000 | 180 | 0 | 0 | 1 | 180 | 1 | 180 | 1.19e-134 | 374 |
| MS.gene44365.t1 | MTR_5g034125 | 100.000 | 180 | 0 | 0 | 1 | 180 | 1 | 180 | 1.19e-134 | 374 |
| MS.gene44365.t1 | MTR_1g086480 | 99.444 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 3.46e-134 | 372 |
| MS.gene44365.t1 | MTR_6g005820 | 99.444 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 5.20e-134 | 372 |
| MS.gene44365.t1 | MTR_7g109960 | 98.889 | 180 | 2 | 0 | 1 | 180 | 1 | 180 | 1.46e-133 | 371 |
| MS.gene44365.t1 | MTR_5g016540 | 87.222 | 180 | 23 | 0 | 1 | 180 | 1 | 180 | 2.42e-120 | 337 |
| MS.gene44365.t1 | MTR_4g128910 | 63.277 | 177 | 65 | 0 | 1 | 177 | 1 | 177 | 3.24e-84 | 246 |
| MS.gene44365.t1 | MTR_5g007810 | 61.582 | 177 | 68 | 0 | 1 | 177 | 1 | 177 | 5.04e-83 | 243 |
| MS.gene44365.t1 | MTR_4g077640 | 60.452 | 177 | 70 | 0 | 1 | 177 | 1 | 177 | 2.67e-80 | 237 |
| MS.gene44365.t1 | MTR_5g007820 | 55.495 | 182 | 79 | 1 | 1 | 180 | 1 | 182 | 2.79e-75 | 224 |
| MS.gene44365.t1 | MTR_1g076550 | 51.667 | 180 | 87 | 0 | 1 | 180 | 1 | 180 | 6.24e-67 | 202 |
| MS.gene44365.t1 | MTR_5g007840 | 42.723 | 213 | 77 | 2 | 1 | 180 | 1 | 201 | 8.61e-57 | 177 |
| MS.gene44365.t1 | MTR_8g077540 | 48.485 | 165 | 82 | 3 | 18 | 180 | 17 | 180 | 1.02e-49 | 159 |
| MS.gene44365.t1 | MTR_8g077540 | 48.485 | 165 | 82 | 3 | 18 | 180 | 43 | 206 | 1.47e-49 | 159 |
| MS.gene44365.t1 | MTR_2g022200 | 34.831 | 178 | 105 | 2 | 5 | 173 | 5 | 180 | 4.64e-37 | 127 |
| MS.gene44365.t1 | MTR_5g078090 | 34.091 | 176 | 113 | 2 | 1 | 173 | 1 | 176 | 8.78e-31 | 110 |
| MS.gene44365.t1 | MTR_5g015370 | 32.240 | 183 | 121 | 2 | 1 | 180 | 1 | 183 | 8.25e-30 | 108 |
| MS.gene44365.t1 | MTR_8g077540 | 51.020 | 98 | 46 | 2 | 18 | 114 | 17 | 113 | 1.81e-28 | 103 |
| MS.gene44365.t1 | MTR_4g026950 | 31.847 | 157 | 106 | 1 | 18 | 173 | 1 | 157 | 5.09e-26 | 97.8 |
| MS.gene44365.t1 | MTR_2g034640 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 9.15e-25 | 95.5 |
| MS.gene44365.t1 | MTR_7g112090 | 31.073 | 177 | 106 | 2 | 15 | 177 | 18 | 192 | 2.47e-24 | 94.4 |
| MS.gene44365.t1 | MTR_4g121860 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 7.41e-23 | 90.5 |
| MS.gene44365.t1 | MTR_1g062760 | 34.118 | 85 | 52 | 1 | 18 | 98 | 15 | 99 | 2.64e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44365.t1 | AT5G14670 | 98.889 | 180 | 2 | 0 | 1 | 180 | 1 | 180 | 5.83e-133 | 369 |
| MS.gene44365.t1 | AT5G14670 | 98.889 | 180 | 2 | 0 | 1 | 180 | 1 | 180 | 5.83e-133 | 369 |
| MS.gene44365.t1 | AT1G10630 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 7.66e-133 | 369 |
| MS.gene44365.t1 | AT1G10630 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 7.66e-133 | 369 |
| MS.gene44365.t1 | AT3G62290 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 1.10e-132 | 369 |
| MS.gene44365.t1 | AT3G62290 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 1.10e-132 | 369 |
| MS.gene44365.t1 | AT3G62290 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 1.10e-132 | 369 |
| MS.gene44365.t1 | AT5G14670 | 98.889 | 180 | 2 | 0 | 1 | 180 | 1 | 180 | 1.41e-132 | 369 |
| MS.gene44365.t1 | AT2G47170 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 1.78e-132 | 368 |
| MS.gene44365.t1 | AT2G47170 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 1.78e-132 | 368 |
| MS.gene44365.t1 | AT2G47170 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 1.78e-132 | 368 |
| MS.gene44365.t1 | AT1G70490 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 1.78e-132 | 368 |
| MS.gene44365.t1 | AT1G70490 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 1.78e-132 | 368 |
| MS.gene44365.t1 | AT1G70490 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 1.78e-132 | 368 |
| MS.gene44365.t1 | AT1G70490 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 1.78e-132 | 368 |
| MS.gene44365.t1 | AT1G70490 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 1.78e-132 | 368 |
| MS.gene44365.t1 | AT1G70490 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 1.78e-132 | 368 |
| MS.gene44365.t1 | AT1G23490 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 1.78e-132 | 368 |
| MS.gene44365.t1 | AT1G70490 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 1.78e-132 | 368 |
| MS.gene44365.t1 | AT2G15310 | 67.778 | 180 | 58 | 0 | 1 | 180 | 1 | 180 | 3.03e-91 | 265 |
| MS.gene44365.t1 | AT2G24765 | 62.147 | 177 | 67 | 0 | 1 | 177 | 1 | 177 | 1.48e-84 | 247 |
| MS.gene44365.t1 | AT5G17060 | 58.659 | 179 | 74 | 0 | 1 | 179 | 1 | 179 | 3.10e-81 | 239 |
| MS.gene44365.t1 | AT5G17060 | 58.659 | 179 | 74 | 0 | 1 | 179 | 1 | 179 | 3.10e-81 | 239 |
| MS.gene44365.t1 | AT3G03120 | 60.452 | 177 | 70 | 0 | 1 | 177 | 1 | 177 | 4.96e-81 | 238 |
| MS.gene44365.t1 | AT3G22950 | 52.778 | 180 | 85 | 0 | 1 | 180 | 1 | 180 | 5.35e-70 | 210 |
| MS.gene44365.t1 | AT3G22950 | 52.778 | 180 | 85 | 0 | 1 | 180 | 1 | 180 | 5.35e-70 | 210 |
| MS.gene44365.t1 | AT2G24765 | 64.844 | 128 | 45 | 0 | 1 | 128 | 1 | 128 | 1.04e-60 | 185 |
| MS.gene44365.t1 | AT3G03120 | 63.077 | 130 | 48 | 0 | 1 | 130 | 1 | 130 | 5.62e-60 | 183 |
| MS.gene44365.t1 | AT1G02430 | 48.936 | 188 | 82 | 5 | 1 | 176 | 1 | 186 | 9.06e-57 | 177 |
| MS.gene44365.t1 | AT1G02440 | 46.237 | 186 | 90 | 4 | 1 | 176 | 1 | 186 | 7.19e-56 | 175 |
| MS.gene44365.t1 | AT2G18390 | 48.485 | 165 | 82 | 3 | 18 | 180 | 17 | 180 | 3.54e-49 | 157 |
| MS.gene44365.t1 | AT1G02430 | 47.205 | 161 | 75 | 4 | 1 | 153 | 1 | 159 | 4.75e-45 | 146 |
| MS.gene44365.t1 | AT5G52210 | 34.091 | 176 | 109 | 1 | 5 | 173 | 5 | 180 | 7.56e-36 | 124 |
| MS.gene44365.t1 | AT5G52210 | 34.091 | 176 | 109 | 1 | 5 | 173 | 5 | 180 | 7.56e-36 | 124 |
| MS.gene44365.t1 | AT3G49870 | 34.091 | 176 | 113 | 2 | 1 | 173 | 1 | 176 | 2.88e-32 | 114 |
| MS.gene44365.t1 | AT5G67560 | 33.742 | 163 | 107 | 1 | 12 | 173 | 14 | 176 | 2.34e-31 | 112 |
| MS.gene44365.t1 | AT5G37680 | 33.742 | 163 | 107 | 1 | 12 | 173 | 14 | 176 | 4.16e-30 | 108 |
| MS.gene44365.t1 | AT3G49870 | 33.121 | 157 | 104 | 1 | 18 | 173 | 1 | 157 | 4.32e-29 | 105 |
| MS.gene44365.t1 | AT3G49860 | 32.530 | 166 | 111 | 1 | 16 | 180 | 10 | 175 | 2.61e-28 | 104 |
| MS.gene44365.t1 | AT1G02440 | 33.766 | 154 | 66 | 3 | 1 | 153 | 1 | 119 | 1.27e-26 | 98.2 |
| MS.gene44365.t1 | AT1G09180 | 32.961 | 179 | 104 | 2 | 13 | 177 | 16 | 192 | 2.44e-25 | 97.1 |
| MS.gene44365.t1 | AT3G62560 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 1.42e-24 | 95.1 |
| MS.gene44365.t1 | AT5G37680 | 32.812 | 128 | 86 | 0 | 46 | 173 | 2 | 129 | 4.62e-24 | 92.0 |
| MS.gene44365.t1 | AT4G02080 | 31.073 | 177 | 106 | 2 | 15 | 177 | 18 | 192 | 4.70e-24 | 93.6 |
| MS.gene44365.t1 | AT1G56330 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 5.07e-24 | 93.6 |
Find 53 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAACAGATTATTACCTTAT+TGG | 0.220363 | 5.1:-25010472 | None:intergenic |
| ACCCAACTTGTCAGTAATTT+CGG | 0.318172 | 5.1:-25010267 | None:intergenic |
| CAGAGCACCTGTGCAACTTC+CGG | 0.333413 | 5.1:+25010405 | MS.gene44365:CDS |
| ATATAAGACCCTGAGTGTTC+TGG | 0.338828 | 5.1:-25009740 | None:intergenic |
| TTCCAACAACATAGCCAATA+AGG | 0.351695 | 5.1:+25010458 | MS.gene44365:CDS |
| TACCTTATTGGCTATGTTGT+TGG | 0.353173 | 5.1:-25010460 | None:intergenic |
| GAACATTAGCTTCACCGTTT+GGG | 0.382427 | 5.1:+25009547 | MS.gene44365:CDS |
| TCGGCAGCATTCATTGCATT+TGG | 0.390949 | 5.1:-25010248 | None:intergenic |
| AGAACATTAGCTTCACCGTT+TGG | 0.392481 | 5.1:+25009546 | MS.gene44365:CDS |
| AGAGCACCTGTGCAACTTCC+GGG | 0.403911 | 5.1:+25010406 | MS.gene44365:CDS |
| CGGAAGTTGCACAGGTGCTC+TGG | 0.408972 | 5.1:-25010404 | None:intergenic |
| AGCTTCACCGTTTGGGATGT+TGG | 0.428276 | 5.1:+25009554 | MS.gene44365:CDS |
| CAGTCGGTTATTCGCGAAGA+AGG | 0.434991 | 5.1:+25008311 | MS.gene44365:CDS |
| ATCCTTTACAAGCTCAAGCT+TGG | 0.444376 | 5.1:+25008381 | MS.gene44365:CDS |
| GGAGGGTCTCTATGAAGGTT+TGG | 0.453032 | 5.1:+25010428 | MS.gene44365:CDS |
| ACCTGTGCAACTTCCGGGGA+GGG | 0.478989 | 5.1:+25010411 | MS.gene44365:CDS |
| ATTTGGAAGATCTTGTTTGT+TGG | 0.480982 | 5.1:-25010231 | None:intergenic |
| CATCCTATGTAACTCATCTC+TGG | 0.482324 | 5.1:-25009802 | None:intergenic |
| TCCGGGGAGGGTCTCTATGA+AGG | 0.482624 | 5.1:+25010423 | MS.gene44365:CDS |
| ACCCTCCCCGGAAGTTGCAC+AGG | 0.491238 | 5.1:-25010412 | None:intergenic |
| TGCCGAAATTACTGACAAGT+TGG | 0.496529 | 5.1:+25010265 | MS.gene44365:CDS |
| GTCTCTATGAAGGTTTGGAC+TGG | 0.504629 | 5.1:+25010433 | MS.gene44365:CDS |
| TTGTCGTGGACAGCAATGAC+AGG | 0.508893 | 5.1:+25009763 | MS.gene44365:CDS |
| CTCCAAGCTTGAGCTTGTAA+AGG | 0.521573 | 5.1:-25008383 | None:intergenic |
| ACTCTCTGAGACAGCGCCAC+TGG | 0.541563 | 5.1:+25010294 | MS.gene44365:CDS |
| ACCTTCATAGAGACCCTCCC+CGG | 0.544592 | 5.1:-25010424 | None:intergenic |
| ATGGTTGGTCTCGATGCGGC+TGG | 0.544748 | 5.1:+25008348 | MS.gene44365:CDS |
| TTCACCGTTTGGGATGTTGG+AGG | 0.546724 | 5.1:+25009557 | MS.gene44365:CDS |
| GCCGAAATTACTGACAAGTT+GGG | 0.549280 | 5.1:+25010266 | MS.gene44365:CDS |
| CATTCACAAAGCTGTTCAGT+CGG | 0.551165 | 5.1:+25008295 | MS.gene44365:CDS |
| GAAGGAAATGCGAATTCTGA+TGG | 0.554686 | 5.1:+25008329 | MS.gene44365:CDS |
| CTTACCAATGGTAGGGATGG+TGG | 0.573307 | 5.1:-25008415 | None:intergenic |
| GTCACCACCATCCCTACCAT+TGG | 0.577538 | 5.1:+25008411 | MS.gene44365:CDS |
| AAGCCAGAGATGAGTTACAT+AGG | 0.581634 | 5.1:+25009799 | MS.gene44365:CDS |
| TTGGCCTCCAACATCCCAAA+CGG | 0.582161 | 5.1:-25009561 | None:intergenic |
| GAAATGCGAATTCTGATGGT+TGG | 0.586975 | 5.1:+25008333 | MS.gene44365:CDS |
| AAGCTTGAGCTTGTAAAGGA+TGG | 0.590971 | 5.1:-25008379 | None:intergenic |
| ACAGAAACTTACCAATGGTA+GGG | 0.591759 | 5.1:-25008422 | None:intergenic |
| TACAGATTCGTCCACTGTGG+AGG | 0.592923 | 5.1:+25009709 | MS.gene44365:intron |
| GCACTACTTCCAGAACACTC+AGG | 0.597040 | 5.1:+25009731 | MS.gene44365:CDS |
| AAACTTACCAATGGTAGGGA+TGG | 0.599979 | 5.1:-25008418 | None:intergenic |
| TCAGGGTCTTATATTTGTCG+TGG | 0.605136 | 5.1:+25009749 | MS.gene44365:CDS |
| CACTACTTCCAGAACACTCA+GGG | 0.606230 | 5.1:+25009732 | MS.gene44365:CDS |
| CTTGAGCTTGTAAAGGATGG+TGG | 0.615400 | 5.1:-25008376 | None:intergenic |
| AGGGTTCAATGTGGAAACTG+TGG | 0.615557 | 5.1:+25009517 | MS.gene44365:intron |
| GAGCACCTGTGCAACTTCCG+GGG | 0.617937 | 5.1:+25010407 | MS.gene44365:CDS |
| GTTACATAGGATGTTGAATG+AGG | 0.618955 | 5.1:+25009812 | MS.gene44365:CDS |
| GGATGTTGGAGGCCAAGACA+AGG | 0.624916 | 5.1:+25009568 | MS.gene44365:CDS |
| CACCTGTGCAACTTCCGGGG+AGG | 0.625313 | 5.1:+25010410 | MS.gene44365:CDS |
| AACAGAAACTTACCAATGGT+AGG | 0.627334 | 5.1:-25008423 | None:intergenic |
| TGTCGTGGACAGCAATGACA+GGG | 0.675280 | 5.1:+25009764 | MS.gene44365:CDS |
| TCTGATGGTTGGTCTCGATG+CGG | 0.691288 | 5.1:+25008344 | MS.gene44365:CDS |
| TGGAAGTAGTGCCTCCACAG+TGG | 0.702478 | 5.1:-25009720 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTCATTAACTTTTAT+TGG | + | chr5.1:25008921-25008940 | MS.gene44365:intron | 10.0% |
| !!! | GTAATTTTTAAATTTAAGAA+TGG | + | chr5.1:25009036-25009055 | MS.gene44365:intron | 10.0% |
| !!! | TTATTTATTGATTTGTTTTA+GGG | + | chr5.1:25009498-25009517 | MS.gene44365:intron | 10.0% |
| !!! | TTTATTTATTGATTTGTTTT+AGG | + | chr5.1:25009497-25009516 | MS.gene44365:intron | 10.0% |
| !!! | TTTATTTTAATTATCTTTTC+AGG | + | chr5.1:25010175-25010194 | MS.gene44365:intron | 10.0% |
| !!! | ACAACATTTTATACTAAATA+GGG | - | chr5.1:25009248-25009267 | None:intergenic | 15.0% |
| !!! | TAACTTTATTTGACTTATTT+TGG | + | chr5.1:25009840-25009859 | MS.gene44365:intron | 15.0% |
| !! | AAAAAAACTAACCATAAGAA+AGG | + | chr5.1:25009087-25009106 | MS.gene44365:intron | 20.0% |
| !! | AGATAACTTTAATCTATGTT+TGG | - | chr5.1:25008612-25008631 | None:intergenic | 20.0% |
| !! | GAATTTCATTGATAAGATAA+TGG | + | chr5.1:25008990-25009009 | MS.gene44365:intron | 20.0% |
| !! | TAGACAAAATACTAAATGAA+TGG | - | chr5.1:25008951-25008970 | None:intergenic | 20.0% |
| !! | TATAAAATGTTGTCAAATAG+CGG | + | chr5.1:25009255-25009274 | MS.gene44365:intron | 20.0% |
| !!! | CTATTTTTCATTAATGTAAG+TGG | + | chr5.1:25008968-25008987 | MS.gene44365:intron | 20.0% |
| !!! | CTTATGGTTAGTTTTTTTAA+AGG | - | chr5.1:25009085-25009104 | None:intergenic | 20.0% |
| !!! | GACAACATTTTATACTAAAT+AGG | - | chr5.1:25009249-25009268 | None:intergenic | 20.0% |
| ! | AAGTAATATTGTAGTTGTTG+AGG | - | chr5.1:25009371-25009390 | None:intergenic | 25.0% |
| ! | AATATGTGTTTGTTCAGTAT+TGG | + | chr5.1:25008475-25008494 | MS.gene44365:intron | 25.0% |
| ! | ACAAAATACTAAATGAATGG+TGG | - | chr5.1:25008948-25008967 | None:intergenic | 25.0% |
| ! | ACAATTATCAGAGATATGTT+CGG | - | chr5.1:25009653-25009672 | None:intergenic | 25.0% |
| ! | CAAAATACTAAATGAATGGT+GGG | - | chr5.1:25008947-25008966 | None:intergenic | 25.0% |
| ! | GTAAATTGCATCTAAACATA+AGG | - | chr5.1:25009611-25009630 | None:intergenic | 25.0% |
| ! | TAAAATGACCAACATACTTT+GGG | - | chr5.1:25008798-25008817 | None:intergenic | 25.0% |
| ! | TACATGTTTGATATCATAGT+GGG | + | chr5.1:25008505-25008524 | MS.gene44365:intron | 25.0% |
| ! | TCTATGTTTGGTATAATAGT+CGG | - | chr5.1:25008600-25008619 | None:intergenic | 25.0% |
| !!! | TGTATTTTGTTGTGCATATT+AGG | + | chr5.1:25009974-25009993 | MS.gene44365:intron | 25.0% |
| AAACAAGCATATACGAACTA+AGG | - | chr5.1:25008841-25008860 | None:intergenic | 30.0% | |
| AACAAGCATATACGAACTAA+GGG | - | chr5.1:25008840-25008859 | None:intergenic | 30.0% | |
| AACTAACCATAAGAAAGGAA+TGG | + | chr5.1:25009092-25009111 | MS.gene44365:intron | 30.0% | |
| ATCATCAAAATACTTACCAG+TGG | - | chr5.1:25010313-25010332 | None:intergenic | 30.0% | |
| ATGCTCCTATGACAAATTTA+GGG | + | chr5.1:25009905-25009924 | MS.gene44365:intron | 30.0% | |
| CAAAAATTTACACCTTGTCT+TGG | - | chr5.1:25009583-25009602 | None:intergenic | 30.0% | |
| CAAATATGAATGTGAAGACA+TGG | - | chr5.1:25009875-25009894 | None:intergenic | 30.0% | |
| CTAAAATGACCAACATACTT+TGG | - | chr5.1:25008799-25008818 | None:intergenic | 30.0% | |
| CTACATGTTTGATATCATAG+TGG | + | chr5.1:25008504-25008523 | MS.gene44365:intron | 30.0% | |
| GCCAAGAACTCAATTATATA+TGG | - | chr5.1:25008660-25008679 | None:intergenic | 30.0% | |
| GCCATATATAATTGAGTTCT+TGG | + | chr5.1:25008656-25008675 | MS.gene44365:intron | 30.0% | |
| TAGTAACAGAAACTTACCAA+TGG | - | chr5.1:25008430-25008449 | None:intergenic | 30.0% | |
| TTTGACAATGCTTTCTATGA+TGG | + | chr5.1:25009390-25009409 | MS.gene44365:intron | 30.0% | |
| ! | ATTTGGAAGATCTTGTTTGT+TGG | - | chr5.1:25010234-25010253 | None:intergenic | 30.0% |
| ! | TGAGATCTAAAATACTCTTC+TGG | + | chr5.1:25010366-25010385 | MS.gene44365:intron | 30.0% |
| !! | TGCTTTCTATGATGGATTAT+TGG | + | chr5.1:25009398-25009417 | MS.gene44365:intron | 30.0% |
| !!! | ATTTGTTTTAGGGTTCAATG+TGG | + | chr5.1:25009508-25009527 | MS.gene44365:intron | 30.0% |
| AACAACACAGTATAGACATC+AGG | - | chr5.1:25009142-25009161 | None:intergenic | 35.0% | |
| AACAGAAACTTACCAATGGT+AGG | - | chr5.1:25008426-25008445 | None:intergenic | 35.0% | |
| ACAGAAACTTACCAATGGTA+GGG | - | chr5.1:25008425-25008444 | None:intergenic | 35.0% | |
| ACCCAACTTGTCAGTAATTT+CGG | - | chr5.1:25010270-25010289 | None:intergenic | 35.0% | |
| AGCAAACCACTATTGTTCTA+CGG | + | chr5.1:25009216-25009235 | MS.gene44365:intron | 35.0% | |
| ATAATTGTCTTCGAAGTCAG+TGG | + | chr5.1:25009665-25009684 | MS.gene44365:intron | 35.0% | |
| CCAGTTCTTGTAAATTTCCT+AGG | + | chr5.1:25010007-25010026 | MS.gene44365:intron | 35.0% | |
| CCTAGGAAATTTACAAGAAC+TGG | - | chr5.1:25010010-25010029 | None:intergenic | 35.0% | |
| CTCAAGATTCCAATCAATAC+TGG | - | chr5.1:25010350-25010369 | None:intergenic | 35.0% | |
| GAGTTCCCTAAATTTGTCAT+AGG | - | chr5.1:25009913-25009932 | None:intergenic | 35.0% | |
| GATGCTCCTATGACAAATTT+AGG | + | chr5.1:25009904-25009923 | MS.gene44365:intron | 35.0% | |
| GCTATACTGCTATAGTGTAA+TGG | + | chr5.1:25009187-25009206 | MS.gene44365:intron | 35.0% | |
| GTTACATAGGATGTTGAATG+AGG | + | chr5.1:25009812-25009831 | MS.gene44365:CDS | 35.0% | |
| TAACCATAAGAAAGGAATGG+AGG | + | chr5.1:25009095-25009114 | MS.gene44365:intron | 35.0% | |
| TAGGTTTGTCCAAGTCAATA+TGG | + | chr5.1:25008554-25008573 | MS.gene44365:intron | 35.0% | |
| TATCAACCGTAGAACAATAG+TGG | - | chr5.1:25009225-25009244 | None:intergenic | 35.0% | |
| TCAAAGATCACTGAGGTAAT+TGG | - | chr5.1:25008682-25008701 | None:intergenic | 35.0% | |
| TTCCATTTCAAAGATCACTG+AGG | - | chr5.1:25008689-25008708 | None:intergenic | 35.0% | |
| ! | TACCTCAGTGATCTTTGAAA+TGG | + | chr5.1:25008684-25008703 | MS.gene44365:intron | 35.0% |
| !! | TGTAGTTGTTGAGGAGTATT+TGG | - | chr5.1:25009362-25009381 | None:intergenic | 35.0% |
| !! | TTAGAAGCACTAAACATCCT+AGG | - | chr5.1:25010027-25010046 | None:intergenic | 35.0% |
| AAACTTACCAATGGTAGGGA+TGG | - | chr5.1:25008421-25008440 | None:intergenic | 40.0% | |
| AAGCCAGAGATGAGTTACAT+AGG | + | chr5.1:25009799-25009818 | MS.gene44365:CDS | 40.0% | |
| AAGCTTGAGCTTGTAAAGGA+TGG | - | chr5.1:25008382-25008401 | None:intergenic | 40.0% | |
| ACTATGACACCAAATATGCC+TGG | - | chr5.1:25008535-25008554 | None:intergenic | 40.0% | |
| ATATAAGACCCTGAGTGTTC+TGG | - | chr5.1:25009743-25009762 | None:intergenic | 40.0% | |
| ATCCTTTACAAGCTCAAGCT+TGG | + | chr5.1:25008381-25008400 | MS.gene44365:CDS | 40.0% | |
| ATGTGAAGACATGGCATCAA+AGG | - | chr5.1:25009866-25009885 | None:intergenic | 40.0% | |
| CATCCTATGTAACTCATCTC+TGG | - | chr5.1:25009805-25009824 | None:intergenic | 40.0% | |
| CATTCACAAAGCTGTTCAGT+CGG | + | chr5.1:25008295-25008314 | MS.gene44365:CDS | 40.0% | |
| CTTCCTCCATTCCTTTCTTA+TGG | - | chr5.1:25009101-25009120 | None:intergenic | 40.0% | |
| GAAATGCGAATTCTGATGGT+TGG | + | chr5.1:25008333-25008352 | MS.gene44365:CDS | 40.0% | |
| GAAGGAAATGCGAATTCTGA+TGG | + | chr5.1:25008329-25008348 | MS.gene44365:CDS | 40.0% | |
| GCCGAAATTACTGACAAGTT+GGG | + | chr5.1:25010266-25010285 | MS.gene44365:CDS | 40.0% | |
| TCGTGGATAGCAGAAAATAG+TGG | - | chr5.1:25009326-25009345 | None:intergenic | 40.0% | |
| TGCCGAAATTACTGACAAGT+TGG | + | chr5.1:25010265-25010284 | MS.gene44365:CDS | 40.0% | |
| ! | AGAACATTAGCTTCACCGTT+TGG | + | chr5.1:25009546-25009565 | MS.gene44365:CDS | 40.0% |
| ! | ATACGAACTAAGGGAGTACA+TGG | - | chr5.1:25008831-25008850 | None:intergenic | 40.0% |
| ! | GAACATTAGCTTCACCGTTT+GGG | + | chr5.1:25009547-25009566 | MS.gene44365:CDS | 40.0% |
| ! | TCAGGGTCTTATATTTGTCG+TGG | + | chr5.1:25009749-25009768 | MS.gene44365:CDS | 40.0% |
| ! | TCTGAGATCCCAAAGTATGT+TGG | + | chr5.1:25008787-25008806 | MS.gene44365:intron | 40.0% |
| ! | TTGGAAAGTGTAGTCAATCG+TGG | - | chr5.1:25009343-25009362 | None:intergenic | 40.0% |
| ! | TTTTACAGATTCGTCCACTG+TGG | + | chr5.1:25009706-25009725 | MS.gene44365:intron | 40.0% |
| !! | AATACTCTTCTGGTTCTTCC+AGG | + | chr5.1:25010376-25010395 | MS.gene44365:intron | 40.0% |
| !! | GGCATATTTGGTGTCATAGT+AGG | + | chr5.1:25008535-25008554 | MS.gene44365:intron | 40.0% |
| AATATGGCTCGCTGTGATTC+TGG | + | chr5.1:25008570-25008589 | MS.gene44365:intron | 45.0% | |
| AGGGTTCAATGTGGAAACTG+TGG | + | chr5.1:25009517-25009536 | MS.gene44365:intron | 45.0% | |
| CACTACTTCCAGAACACTCA+GGG | + | chr5.1:25009732-25009751 | MS.gene44365:CDS | 45.0% | |
| CTCCAAGCTTGAGCTTGTAA+AGG | - | chr5.1:25008386-25008405 | None:intergenic | 45.0% | |
| CTTGAGCTTGTAAAGGATGG+TGG | - | chr5.1:25008379-25008398 | None:intergenic | 45.0% | |
| GCTATAGCACTAGTGTGTAG+TGG | + | chr5.1:25009288-25009307 | MS.gene44365:intron | 45.0% | |
| GTCTCTATGAAGGTTTGGAC+TGG | + | chr5.1:25010433-25010452 | MS.gene44365:CDS | 45.0% | |
| TCGGCAGCATTCATTGCATT+TGG | - | chr5.1:25010251-25010270 | None:intergenic | 45.0% | |
| ! | ACTAAGGGAGTACATGGCAT+TGG | - | chr5.1:25008825-25008844 | None:intergenic | 45.0% |
| ! | GATATCATAGTGGGAATGCC+AGG | + | chr5.1:25008514-25008533 | MS.gene44365:intron | 45.0% |
| !! | GCTTCGTGTCCAGTATTGAT+TGG | + | chr5.1:25010338-25010357 | MS.gene44365:intron | 45.0% |
| CAGTCGGTTATTCGCGAAGA+AGG | + | chr5.1:25008311-25008330 | MS.gene44365:CDS | 50.0% | |
| CTTACCAATGGTAGGGATGG+TGG | - | chr5.1:25008418-25008437 | None:intergenic | 50.0% | |
| GCACTACTTCCAGAACACTC+AGG | + | chr5.1:25009731-25009750 | MS.gene44365:CDS | 50.0% | |
| GGAGGGTCTCTATGAAGGTT+TGG | + | chr5.1:25010428-25010447 | MS.gene44365:CDS | 50.0% | |
| GTGGGAATGCCAGGCATATT+TGG | + | chr5.1:25008523-25008542 | MS.gene44365:intron | 50.0% | |
| TACAGATTCGTCCACTGTGG+AGG | + | chr5.1:25009709-25009728 | MS.gene44365:intron | 50.0% | |
| TGTCGTGGACAGCAATGACA+GGG | + | chr5.1:25009764-25009783 | MS.gene44365:CDS | 50.0% | |
| TTGGCCTCCAACATCCCAAA+CGG | - | chr5.1:25009564-25009583 | None:intergenic | 50.0% | |
| TTGTCGTGGACAGCAATGAC+AGG | + | chr5.1:25009763-25009782 | MS.gene44365:CDS | 50.0% | |
| ! | AGCTTCACCGTTTGGGATGT+TGG | + | chr5.1:25009554-25009573 | MS.gene44365:CDS | 50.0% |
| ! | CACAGCGAGCCATATTGACT+TGG | - | chr5.1:25008566-25008585 | None:intergenic | 50.0% |
| ! | TTCACCGTTTGGGATGTTGG+AGG | + | chr5.1:25009557-25009576 | MS.gene44365:CDS | 50.0% |
| !! | TCTGATGGTTGGTCTCGATG+CGG | + | chr5.1:25008344-25008363 | MS.gene44365:CDS | 50.0% |
| ACCTTCATAGAGACCCTCCC+CGG | - | chr5.1:25010427-25010446 | None:intergenic | 55.0% | |
| GGATGTTGGAGGCCAAGACA+AGG | + | chr5.1:25009568-25009587 | MS.gene44365:CDS | 55.0% | |
| GTCACCACCATCCCTACCAT+TGG | + | chr5.1:25008411-25008430 | MS.gene44365:CDS | 55.0% | |
| TGGAAGTAGTGCCTCCACAG+TGG | - | chr5.1:25009723-25009742 | None:intergenic | 55.0% | |
| ! | ACAGGTGCTCTGGATGTACC+TGG | - | chr5.1:25010397-25010416 | None:intergenic | 55.0% |
| ! | AGAGCACCTGTGCAACTTCC+GGG | + | chr5.1:25010406-25010425 | MS.gene44365:CDS | 55.0% |
| ! | CAGAGCACCTGTGCAACTTC+CGG | + | chr5.1:25010405-25010424 | MS.gene44365:CDS | 55.0% |
| ACCTGTGCAACTTCCGGGGA+GGG | + | chr5.1:25010411-25010430 | MS.gene44365:CDS | 60.0% | |
| CGGAAGTTGCACAGGTGCTC+TGG | - | chr5.1:25010407-25010426 | None:intergenic | 60.0% | |
| GAGCACCTGTGCAACTTCCG+GGG | + | chr5.1:25010407-25010426 | MS.gene44365:CDS | 60.0% | |
| TCCGGGGAGGGTCTCTATGA+AGG | + | chr5.1:25010423-25010442 | MS.gene44365:CDS | 60.0% | |
| !! | ACTCTCTGAGACAGCGCCAC+TGG | + | chr5.1:25010294-25010313 | MS.gene44365:CDS | 60.0% |
| !! | ATGGTTGGTCTCGATGCGGC+TGG | + | chr5.1:25008348-25008367 | MS.gene44365:CDS | 60.0% |
| ACCCTCCCCGGAAGTTGCAC+AGG | - | chr5.1:25010415-25010434 | None:intergenic | 65.0% | |
| CACCTGTGCAACTTCCGGGG+AGG | + | chr5.1:25010410-25010429 | MS.gene44365:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 25008285 | 25010479 | 25008285 | ID=MS.gene44365 |
| chr5.1 | mRNA | 25008285 | 25010479 | 25008285 | ID=MS.gene44365.t1;Parent=MS.gene44365 |
| chr5.1 | exon | 25008285 | 25008432 | 25008285 | ID=MS.gene44365.t1.exon1;Parent=MS.gene44365.t1 |
| chr5.1 | CDS | 25008285 | 25008432 | 25008285 | ID=cds.MS.gene44365.t1;Parent=MS.gene44365.t1 |
| chr5.1 | exon | 25009519 | 25009589 | 25009519 | ID=MS.gene44365.t1.exon2;Parent=MS.gene44365.t1 |
| chr5.1 | CDS | 25009519 | 25009589 | 25009519 | ID=cds.MS.gene44365.t1;Parent=MS.gene44365.t1 |
| chr5.1 | exon | 25009714 | 25009833 | 25009714 | ID=MS.gene44365.t1.exon3;Parent=MS.gene44365.t1 |
| chr5.1 | CDS | 25009714 | 25009833 | 25009714 | ID=cds.MS.gene44365.t1;Parent=MS.gene44365.t1 |
| chr5.1 | exon | 25010197 | 25010315 | 25010197 | ID=MS.gene44365.t1.exon4;Parent=MS.gene44365.t1 |
| chr5.1 | CDS | 25010197 | 25010315 | 25010197 | ID=cds.MS.gene44365.t1;Parent=MS.gene44365.t1 |
| chr5.1 | exon | 25010398 | 25010479 | 25010398 | ID=MS.gene44365.t1.exon5;Parent=MS.gene44365.t1 |
| chr5.1 | CDS | 25010398 | 25010479 | 25010398 | ID=cds.MS.gene44365.t1;Parent=MS.gene44365.t1 |
| Gene Sequence |
| Protein sequence |
