Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44369.t1 | RZB99279.1 | 100 | 181 | 0 | 0 | 1 | 181 | 17 | 197 | 3.60E-98 | 367.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44369.t1 | P51823 | 99.4 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 2.6e-100 | 365.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44369.t1 | A0A1U7V2M3 | 100.0 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 2.6e-98 | 367.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44369.t1 | MTR_5g034130 | 100.000 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 2.62e-135 | 375 |
| MS.gene44369.t1 | MTR_5g034125 | 100.000 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 2.62e-135 | 375 |
| MS.gene44369.t1 | MTR_1g086480 | 99.448 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 6.88e-135 | 374 |
| MS.gene44369.t1 | MTR_6g005820 | 99.448 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 9.56e-135 | 374 |
| MS.gene44369.t1 | MTR_7g109960 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 6.38e-134 | 372 |
| MS.gene44369.t1 | MTR_5g016540 | 87.222 | 180 | 23 | 0 | 1 | 180 | 1 | 180 | 1.47e-120 | 338 |
| MS.gene44369.t1 | MTR_4g128910 | 63.277 | 177 | 65 | 0 | 1 | 177 | 1 | 177 | 3.37e-84 | 246 |
| MS.gene44369.t1 | MTR_5g007810 | 61.582 | 177 | 68 | 0 | 1 | 177 | 1 | 177 | 4.35e-83 | 244 |
| MS.gene44369.t1 | MTR_4g077640 | 60.452 | 177 | 70 | 0 | 1 | 177 | 1 | 177 | 2.31e-80 | 237 |
| MS.gene44369.t1 | MTR_5g007820 | 55.495 | 182 | 79 | 1 | 1 | 180 | 1 | 182 | 2.90e-75 | 224 |
| MS.gene44369.t1 | MTR_1g076550 | 51.934 | 181 | 87 | 0 | 1 | 181 | 1 | 181 | 1.18e-67 | 204 |
| MS.gene44369.t1 | MTR_5g007840 | 42.723 | 213 | 77 | 2 | 1 | 180 | 1 | 201 | 8.01e-57 | 177 |
| MS.gene44369.t1 | MTR_8g077540 | 48.485 | 165 | 82 | 3 | 18 | 180 | 17 | 180 | 1.01e-49 | 159 |
| MS.gene44369.t1 | MTR_8g077540 | 48.485 | 165 | 82 | 3 | 18 | 180 | 43 | 206 | 1.51e-49 | 159 |
| MS.gene44369.t1 | MTR_2g022200 | 34.831 | 178 | 105 | 2 | 5 | 173 | 5 | 180 | 4.22e-37 | 127 |
| MS.gene44369.t1 | MTR_5g078090 | 34.091 | 176 | 113 | 2 | 1 | 173 | 1 | 176 | 1.05e-30 | 110 |
| MS.gene44369.t1 | MTR_5g015370 | 32.065 | 184 | 122 | 2 | 1 | 181 | 1 | 184 | 5.42e-30 | 108 |
| MS.gene44369.t1 | MTR_8g077540 | 51.020 | 98 | 46 | 2 | 18 | 114 | 17 | 113 | 1.85e-28 | 103 |
| MS.gene44369.t1 | MTR_4g026950 | 31.847 | 157 | 106 | 1 | 18 | 173 | 1 | 157 | 5.08e-26 | 97.8 |
| MS.gene44369.t1 | MTR_2g034640 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 1.01e-24 | 95.5 |
| MS.gene44369.t1 | MTR_7g112090 | 31.073 | 177 | 106 | 2 | 15 | 177 | 18 | 192 | 2.77e-24 | 94.4 |
| MS.gene44369.t1 | MTR_4g121860 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 7.47e-23 | 90.5 |
| MS.gene44369.t1 | MTR_1g062760 | 34.118 | 85 | 52 | 1 | 18 | 98 | 15 | 99 | 2.54e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44369.t1 | AT5G14670 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 1.28e-133 | 371 |
| MS.gene44369.t1 | AT5G14670 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 1.28e-133 | 371 |
| MS.gene44369.t1 | AT1G10630 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 1.56e-133 | 371 |
| MS.gene44369.t1 | AT1G10630 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 1.56e-133 | 371 |
| MS.gene44369.t1 | AT3G62290 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.34e-133 | 370 |
| MS.gene44369.t1 | AT3G62290 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.34e-133 | 370 |
| MS.gene44369.t1 | AT3G62290 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.34e-133 | 370 |
| MS.gene44369.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene44369.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene44369.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene44369.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene44369.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene44369.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene44369.t1 | AT1G23490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene44369.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene44369.t1 | AT2G47170 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 3.91e-133 | 370 |
| MS.gene44369.t1 | AT2G47170 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 3.91e-133 | 370 |
| MS.gene44369.t1 | AT2G47170 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 3.91e-133 | 370 |
| MS.gene44369.t1 | AT5G14670 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 1.05e-132 | 369 |
| MS.gene44369.t1 | AT2G15310 | 67.403 | 181 | 59 | 0 | 1 | 181 | 1 | 181 | 2.79e-91 | 265 |
| MS.gene44369.t1 | AT2G24765 | 62.147 | 177 | 67 | 0 | 1 | 177 | 1 | 177 | 1.42e-84 | 247 |
| MS.gene44369.t1 | AT5G17060 | 58.659 | 179 | 74 | 0 | 1 | 179 | 1 | 179 | 3.19e-81 | 239 |
| MS.gene44369.t1 | AT5G17060 | 58.659 | 179 | 74 | 0 | 1 | 179 | 1 | 179 | 3.19e-81 | 239 |
| MS.gene44369.t1 | AT3G03120 | 60.452 | 177 | 70 | 0 | 1 | 177 | 1 | 177 | 4.48e-81 | 239 |
| MS.gene44369.t1 | AT3G22950 | 53.039 | 181 | 85 | 0 | 1 | 181 | 1 | 181 | 1.15e-70 | 212 |
| MS.gene44369.t1 | AT3G22950 | 53.039 | 181 | 85 | 0 | 1 | 181 | 1 | 181 | 1.15e-70 | 212 |
| MS.gene44369.t1 | AT2G24765 | 64.844 | 128 | 45 | 0 | 1 | 128 | 1 | 128 | 1.19e-60 | 185 |
| MS.gene44369.t1 | AT3G03120 | 63.077 | 130 | 48 | 0 | 1 | 130 | 1 | 130 | 4.95e-60 | 183 |
| MS.gene44369.t1 | AT1G02430 | 48.936 | 188 | 82 | 5 | 1 | 176 | 1 | 186 | 9.40e-57 | 177 |
| MS.gene44369.t1 | AT1G02440 | 46.237 | 186 | 90 | 4 | 1 | 176 | 1 | 186 | 7.38e-56 | 175 |
| MS.gene44369.t1 | AT2G18390 | 48.485 | 165 | 82 | 3 | 18 | 180 | 17 | 180 | 3.51e-49 | 157 |
| MS.gene44369.t1 | AT1G02430 | 47.205 | 161 | 75 | 4 | 1 | 153 | 1 | 159 | 5.08e-45 | 146 |
| MS.gene44369.t1 | AT5G52210 | 34.091 | 176 | 109 | 1 | 5 | 173 | 5 | 180 | 6.65e-36 | 124 |
| MS.gene44369.t1 | AT5G52210 | 34.091 | 176 | 109 | 1 | 5 | 173 | 5 | 180 | 6.65e-36 | 124 |
| MS.gene44369.t1 | AT3G49870 | 34.091 | 176 | 113 | 2 | 1 | 173 | 1 | 176 | 3.21e-32 | 114 |
| MS.gene44369.t1 | AT5G67560 | 33.742 | 163 | 107 | 1 | 12 | 173 | 14 | 176 | 2.52e-31 | 112 |
| MS.gene44369.t1 | AT5G37680 | 33.742 | 163 | 107 | 1 | 12 | 173 | 14 | 176 | 4.83e-30 | 108 |
| MS.gene44369.t1 | AT3G49870 | 33.121 | 157 | 104 | 1 | 18 | 173 | 1 | 157 | 5.25e-29 | 105 |
| MS.gene44369.t1 | AT3G49860 | 32.530 | 166 | 111 | 1 | 16 | 180 | 10 | 175 | 2.42e-28 | 104 |
| MS.gene44369.t1 | AT1G02440 | 33.766 | 154 | 66 | 3 | 1 | 153 | 1 | 119 | 1.15e-26 | 98.6 |
| MS.gene44369.t1 | AT1G09180 | 32.961 | 179 | 104 | 2 | 13 | 177 | 16 | 192 | 2.74e-25 | 97.1 |
| MS.gene44369.t1 | AT3G62560 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 1.22e-24 | 95.1 |
| MS.gene44369.t1 | AT5G37680 | 32.812 | 128 | 86 | 0 | 46 | 173 | 2 | 129 | 4.55e-24 | 92.0 |
| MS.gene44369.t1 | AT1G56330 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 4.74e-24 | 93.6 |
| MS.gene44369.t1 | AT4G02080 | 31.073 | 177 | 106 | 2 | 15 | 177 | 18 | 192 | 5.17e-24 | 93.6 |
Find 53 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAACAGATTATTACCTTAT+TGG | 0.220363 | 5.1:-25048081 | None:intergenic |
| ACCCAACTTGTCAGTAATTT+CGG | 0.318172 | 5.1:-25047876 | None:intergenic |
| CAGAGCACCTGTGCAACTTC+CGG | 0.333413 | 5.1:+25048014 | MS.gene44369:CDS |
| ATATAAGACCCTGAGTGTTC+TGG | 0.338828 | 5.1:-25047349 | None:intergenic |
| TTCCAACAACATAGCCAATA+AGG | 0.351695 | 5.1:+25048067 | MS.gene44369:CDS |
| TACCTTATTGGCTATGTTGT+TGG | 0.353173 | 5.1:-25048069 | None:intergenic |
| GAACATTAGCTTCACCGTTT+GGG | 0.382427 | 5.1:+25047156 | MS.gene44369:CDS |
| TCGGCAGCATTCATTGCATT+TGG | 0.390949 | 5.1:-25047857 | None:intergenic |
| AGAACATTAGCTTCACCGTT+TGG | 0.392481 | 5.1:+25047155 | MS.gene44369:CDS |
| AGAGCACCTGTGCAACTTCC+GGG | 0.403911 | 5.1:+25048015 | MS.gene44369:CDS |
| CGGAAGTTGCACAGGTGCTC+TGG | 0.408972 | 5.1:-25048013 | None:intergenic |
| AGCTTCACCGTTTGGGATGT+TGG | 0.428276 | 5.1:+25047163 | MS.gene44369:CDS |
| CAGTCGGTTATTCGCGAAGA+AGG | 0.434991 | 5.1:+25045916 | MS.gene44369:CDS |
| ATCCTTTACAAGCTCAAGCT+TGG | 0.444376 | 5.1:+25045986 | MS.gene44369:CDS |
| GGAGGGTCTCTATGAAGGTT+TGG | 0.453032 | 5.1:+25048037 | MS.gene44369:CDS |
| ACCTGTGCAACTTCCGGGGA+GGG | 0.478989 | 5.1:+25048020 | MS.gene44369:CDS |
| ATTTGGAAGATCTTGTTTGT+TGG | 0.480982 | 5.1:-25047840 | None:intergenic |
| CATCCTATGTAACTCATCTC+TGG | 0.482324 | 5.1:-25047411 | None:intergenic |
| TCCGGGGAGGGTCTCTATGA+AGG | 0.482624 | 5.1:+25048032 | MS.gene44369:CDS |
| ACCCTCCCCGGAAGTTGCAC+AGG | 0.491238 | 5.1:-25048021 | None:intergenic |
| TGCCGAAATTACTGACAAGT+TGG | 0.496529 | 5.1:+25047874 | MS.gene44369:CDS |
| GTCTCTATGAAGGTTTGGAC+TGG | 0.504629 | 5.1:+25048042 | MS.gene44369:CDS |
| TTGTCGTGGACAGCAATGAC+AGG | 0.508893 | 5.1:+25047372 | MS.gene44369:CDS |
| CTCCAAGCTTGAGCTTGTAA+AGG | 0.521573 | 5.1:-25045988 | None:intergenic |
| ACTCTCTGAGACAGCGCCAC+TGG | 0.541563 | 5.1:+25047903 | MS.gene44369:CDS |
| ACCTTCATAGAGACCCTCCC+CGG | 0.544592 | 5.1:-25048033 | None:intergenic |
| ATGGTTGGTCTCGATGCGGC+TGG | 0.544748 | 5.1:+25045953 | MS.gene44369:CDS |
| TTCACCGTTTGGGATGTTGG+AGG | 0.546724 | 5.1:+25047166 | MS.gene44369:CDS |
| GCCGAAATTACTGACAAGTT+GGG | 0.549280 | 5.1:+25047875 | MS.gene44369:CDS |
| CATTCACAAAGCTGTTCAGT+CGG | 0.551165 | 5.1:+25045900 | MS.gene44369:CDS |
| GAAGGAAATGCGAATTCTGA+TGG | 0.554686 | 5.1:+25045934 | MS.gene44369:CDS |
| CTTACCAATGGTAGGGATGG+TGG | 0.573307 | 5.1:-25046020 | None:intergenic |
| GTCACCACCATCCCTACCAT+TGG | 0.577538 | 5.1:+25046016 | MS.gene44369:CDS |
| AAGCCAGAGATGAGTTACAT+AGG | 0.581634 | 5.1:+25047408 | MS.gene44369:CDS |
| TTGGCCTCCAACATCCCAAA+CGG | 0.582161 | 5.1:-25047170 | None:intergenic |
| GAAATGCGAATTCTGATGGT+TGG | 0.586975 | 5.1:+25045938 | MS.gene44369:CDS |
| AAGCTTGAGCTTGTAAAGGA+TGG | 0.590971 | 5.1:-25045984 | None:intergenic |
| ACAGAAACTTACCAATGGTA+GGG | 0.591759 | 5.1:-25046027 | None:intergenic |
| TACAGATTCGTCCACTGTGG+AGG | 0.592923 | 5.1:+25047318 | MS.gene44369:intron |
| GCACTACTTCCAGAACACTC+AGG | 0.597040 | 5.1:+25047340 | MS.gene44369:CDS |
| AAACTTACCAATGGTAGGGA+TGG | 0.599979 | 5.1:-25046023 | None:intergenic |
| TCAGGGTCTTATATTTGTCG+TGG | 0.605136 | 5.1:+25047358 | MS.gene44369:CDS |
| CACTACTTCCAGAACACTCA+GGG | 0.606230 | 5.1:+25047341 | MS.gene44369:CDS |
| CTTGAGCTTGTAAAGGATGG+TGG | 0.615400 | 5.1:-25045981 | None:intergenic |
| AGGGTTCAATGTGGAAACTG+TGG | 0.615557 | 5.1:+25047126 | MS.gene44369:intron |
| GAGCACCTGTGCAACTTCCG+GGG | 0.617937 | 5.1:+25048016 | MS.gene44369:CDS |
| GTTACATAGGATGTTGAATG+AGG | 0.618955 | 5.1:+25047421 | MS.gene44369:CDS |
| GGATGTTGGAGGCCAAGACA+AGG | 0.624916 | 5.1:+25047177 | MS.gene44369:CDS |
| CACCTGTGCAACTTCCGGGG+AGG | 0.625313 | 5.1:+25048019 | MS.gene44369:CDS |
| AACAGAAACTTACCAATGGT+AGG | 0.627334 | 5.1:-25046028 | None:intergenic |
| TGTCGTGGACAGCAATGACA+GGG | 0.675280 | 5.1:+25047373 | MS.gene44369:CDS |
| TCTGATGGTTGGTCTCGATG+CGG | 0.691288 | 5.1:+25045949 | MS.gene44369:CDS |
| TGGAAGTAGTGCCTCCACAG+TGG | 0.702478 | 5.1:-25047329 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTCATTAACTTTTAT+TGG | + | chr5.1:25046527-25046546 | MS.gene44369:intron | 10.0% |
| !!! | GTAATTTTTAAATTTAAGAA+TGG | + | chr5.1:25046643-25046662 | MS.gene44369:intron | 10.0% |
| !!! | TTATTTATTGATTTGTTTTA+GGG | + | chr5.1:25047107-25047126 | MS.gene44369:intron | 10.0% |
| !!! | TTTATTTATTGATTTGTTTT+AGG | + | chr5.1:25047106-25047125 | MS.gene44369:intron | 10.0% |
| !!! | TTTATTTTAATTATCTTTTC+AGG | + | chr5.1:25047784-25047803 | MS.gene44369:intron | 10.0% |
| !!! | ACAACATTTTATACTAAATA+GGG | - | chr5.1:25046857-25046876 | None:intergenic | 15.0% |
| !!! | TAACTTTATTTGACTTATTT+TGG | + | chr5.1:25047449-25047468 | MS.gene44369:intron | 15.0% |
| !!! | TATAAATTGAAGTTATTTCT+TGG | - | chr5.1:25046489-25046508 | None:intergenic | 15.0% |
| !! | AAAAAAACTAACCATAAGAA+AGG | + | chr5.1:25046694-25046713 | MS.gene44369:intron | 20.0% |
| !! | AAATCAACATTTGTACAAAA+AGG | - | chr5.1:25048110-25048129 | None:intergenic | 20.0% |
| !! | AATCAACATTTGTACAAAAA+GGG | - | chr5.1:25048109-25048128 | None:intergenic | 20.0% |
| !! | AGACAAAATACTAAATGAAT+GGG | - | chr5.1:25046557-25046576 | None:intergenic | 20.0% |
| !! | AGATAACTTTAATCTATGTT+TGG | - | chr5.1:25046217-25046236 | None:intergenic | 20.0% |
| !! | GAATTTCATTGATAAGATAA+TGG | + | chr5.1:25046597-25046616 | MS.gene44369:intron | 20.0% |
| !! | TAAACAGATTATTACCTTAT+TGG | - | chr5.1:25048084-25048103 | None:intergenic | 20.0% |
| !! | TAGACAAAATACTAAATGAA+TGG | - | chr5.1:25046558-25046577 | None:intergenic | 20.0% |
| !! | TATAAAATGTTGTCAAATAG+CGG | + | chr5.1:25046864-25046883 | MS.gene44369:intron | 20.0% |
| !!! | AAAGCTTTACATTTTTCATT+TGG | - | chr5.1:25048147-25048166 | None:intergenic | 20.0% |
| !!! | CTATTTTTCATTAATGTAAG+TGG | + | chr5.1:25046575-25046594 | MS.gene44369:intron | 20.0% |
| !!! | CTTATGGTTAGTTTTTTTAA+AGG | - | chr5.1:25046692-25046711 | None:intergenic | 20.0% |
| !!! | GACAACATTTTATACTAAAT+AGG | - | chr5.1:25046858-25046877 | None:intergenic | 20.0% |
| !!! | TTTTAAAGAATGCAAGAATA+GGG | - | chr5.1:25048226-25048245 | None:intergenic | 20.0% |
| !!! | TTTTTAAAGAATGCAAGAAT+AGG | - | chr5.1:25048227-25048246 | None:intergenic | 20.0% |
| ! | AAAATACTAAATGAATGGGT+GGG | - | chr5.1:25046553-25046572 | None:intergenic | 25.0% |
| ! | AAGTAATATTGTAGTTGTTG+AGG | - | chr5.1:25046980-25046999 | None:intergenic | 25.0% |
| ! | AATATGTGTTTGTTCAGTAT+TGG | + | chr5.1:25046080-25046099 | MS.gene44369:intron | 25.0% |
| ! | ACAATTATCAGAGATATGTT+CGG | - | chr5.1:25047262-25047281 | None:intergenic | 25.0% |
| ! | GTAAATTGCATCTAAACATA+AGG | - | chr5.1:25047220-25047239 | None:intergenic | 25.0% |
| ! | TAAAATGACCAACATACTTT+GGG | - | chr5.1:25046403-25046422 | None:intergenic | 25.0% |
| ! | TACATGTTTGATATCATAGT+GGG | + | chr5.1:25046110-25046129 | MS.gene44369:intron | 25.0% |
| ! | TCTATGTTTGGTATAATAGT+CGG | - | chr5.1:25046205-25046224 | None:intergenic | 25.0% |
| !! | TCTAATTCTTTTTACCTTAC+AGG | + | chr5.1:25048354-25048373 | MS.gene44369:intron | 25.0% |
| !!! | TGTATTTTGTTGTGCATATT+AGG | + | chr5.1:25047583-25047602 | MS.gene44369:intron | 25.0% |
| AAACAAGCATATACGAACTA+AGG | - | chr5.1:25046446-25046465 | None:intergenic | 30.0% | |
| AACAAGCATATACGAACTAA+GGG | - | chr5.1:25046445-25046464 | None:intergenic | 30.0% | |
| AACTAACCATAAGAAAGGAA+TGG | + | chr5.1:25046699-25046718 | MS.gene44369:intron | 30.0% | |
| ATCATCAAAATACTTACCAG+TGG | - | chr5.1:25047922-25047941 | None:intergenic | 30.0% | |
| ATGCTCCTATGACAAATTTA+GGG | + | chr5.1:25047514-25047533 | MS.gene44369:intron | 30.0% | |
| CAAAAATTTACACCTTGTCT+TGG | - | chr5.1:25047192-25047211 | None:intergenic | 30.0% | |
| CAAAATACTAAATGAATGGG+TGG | - | chr5.1:25046554-25046573 | None:intergenic | 30.0% | |
| CAAATATGAATGTGAAGACA+TGG | - | chr5.1:25047484-25047503 | None:intergenic | 30.0% | |
| CTAAAATGACCAACATACTT+TGG | - | chr5.1:25046404-25046423 | None:intergenic | 30.0% | |
| CTACATGTTTGATATCATAG+TGG | + | chr5.1:25046109-25046128 | MS.gene44369:intron | 30.0% | |
| GCCAAGAACTCAATTATATA+TGG | - | chr5.1:25046265-25046284 | None:intergenic | 30.0% | |
| GCCATATATAATTGAGTTCT+TGG | + | chr5.1:25046261-25046280 | MS.gene44369:intron | 30.0% | |
| TAGGTTTGTCAAAGTCAATA+TGG | + | chr5.1:25046159-25046178 | MS.gene44369:intron | 30.0% | |
| TAGTAACAGAAACTTACCAA+TGG | - | chr5.1:25046035-25046054 | None:intergenic | 30.0% | |
| TTTGACAATGCTTTCTATGA+TGG | + | chr5.1:25046999-25047018 | MS.gene44369:intron | 30.0% | |
| ! | ATTTGGAAGATCTTGTTTGT+TGG | - | chr5.1:25047843-25047862 | None:intergenic | 30.0% |
| ! | TGAGATCTAAAATACTCTTC+TGG | + | chr5.1:25047975-25047994 | MS.gene44369:intron | 30.0% |
| !! | TGCTTTCTATGATGGATTAT+TGG | + | chr5.1:25047007-25047026 | MS.gene44369:intron | 30.0% |
| !!! | ATTTGTTTTAGGGTTCAATG+TGG | + | chr5.1:25047117-25047136 | MS.gene44369:intron | 30.0% |
| !!! | CTTTTTCTGGAATGAATTAG+AGG | - | chr5.1:25048292-25048311 | None:intergenic | 30.0% |
| AACAACACAGTATAGACATC+AGG | - | chr5.1:25046751-25046770 | None:intergenic | 35.0% | |
| AACAGAAACTTACCAATGGT+AGG | - | chr5.1:25046031-25046050 | None:intergenic | 35.0% | |
| ACAGAAACTTACCAATGGTA+GGG | - | chr5.1:25046030-25046049 | None:intergenic | 35.0% | |
| ACCCAACTTGTCAGTAATTT+CGG | - | chr5.1:25047879-25047898 | None:intergenic | 35.0% | |
| AGCAAACCACTATTGTTCTA+CGG | + | chr5.1:25046825-25046844 | MS.gene44369:intron | 35.0% | |
| ATAATTGTCTTCGAAGTCAG+TGG | + | chr5.1:25047274-25047293 | MS.gene44369:intron | 35.0% | |
| ATGAATTAGAGGAACTAGCA+AGG | - | chr5.1:25048281-25048300 | None:intergenic | 35.0% | |
| CCAGTTCTTGTAAATTTCCT+AGG | + | chr5.1:25047616-25047635 | MS.gene44369:intron | 35.0% | |
| CCTAGGAAATTTACAAGAAC+TGG | - | chr5.1:25047619-25047638 | None:intergenic | 35.0% | |
| CTCAAGATTCCAATCAATAC+TGG | - | chr5.1:25047959-25047978 | None:intergenic | 35.0% | |
| GAGTTCCCTAAATTTGTCAT+AGG | - | chr5.1:25047522-25047541 | None:intergenic | 35.0% | |
| GATGCTCCTATGACAAATTT+AGG | + | chr5.1:25047513-25047532 | MS.gene44369:intron | 35.0% | |
| GCTATACTGCTATAGTGTAA+TGG | + | chr5.1:25046796-25046815 | MS.gene44369:intron | 35.0% | |
| GTTACATAGGATGTTGAATG+AGG | + | chr5.1:25047421-25047440 | MS.gene44369:CDS | 35.0% | |
| TAACCATAAGAAAGGAATGG+AGG | + | chr5.1:25046702-25046721 | MS.gene44369:intron | 35.0% | |
| TATCAACCGTAGAACAATAG+TGG | - | chr5.1:25046834-25046853 | None:intergenic | 35.0% | |
| TCAAAGATCACTGAGGTAAT+TGG | - | chr5.1:25046287-25046306 | None:intergenic | 35.0% | |
| TTCCAACAACATAGCCAATA+AGG | + | chr5.1:25048067-25048086 | MS.gene44369:CDS | 35.0% | |
| TTCCATTTCAAAGATCACTG+AGG | - | chr5.1:25046294-25046313 | None:intergenic | 35.0% | |
| ! | AAAAGCAAGAGTGTGATCTT+TGG | + | chr5.1:25048307-25048326 | MS.gene44369:intron | 35.0% |
| ! | TACCTCAGTGATCTTTGAAA+TGG | + | chr5.1:25046289-25046308 | MS.gene44369:intron | 35.0% |
| ! | TACCTTATTGGCTATGTTGT+TGG | - | chr5.1:25048072-25048091 | None:intergenic | 35.0% |
| !! | TGTAGTTGTTGAGGAGTATT+TGG | - | chr5.1:25046971-25046990 | None:intergenic | 35.0% |
| !! | TTAGAAGCACTAAACATCCT+AGG | - | chr5.1:25047636-25047655 | None:intergenic | 35.0% |
| AAACTTACCAATGGTAGGGA+TGG | - | chr5.1:25046026-25046045 | None:intergenic | 40.0% | |
| AAGCCAGAGATGAGTTACAT+AGG | + | chr5.1:25047408-25047427 | MS.gene44369:CDS | 40.0% | |
| AAGCTTGAGCTTGTAAAGGA+TGG | - | chr5.1:25045987-25046006 | None:intergenic | 40.0% | |
| ACTATGACACCAAATATGCC+TGG | - | chr5.1:25046140-25046159 | None:intergenic | 40.0% | |
| ATATAAGACCCTGAGTGTTC+TGG | - | chr5.1:25047352-25047371 | None:intergenic | 40.0% | |
| ATCCTTTACAAGCTCAAGCT+TGG | + | chr5.1:25045986-25046005 | MS.gene44369:CDS | 40.0% | |
| ATGTGAAGACATGGCATCAA+AGG | - | chr5.1:25047475-25047494 | None:intergenic | 40.0% | |
| CATCCTATGTAACTCATCTC+TGG | - | chr5.1:25047414-25047433 | None:intergenic | 40.0% | |
| CATTCACAAAGCTGTTCAGT+CGG | + | chr5.1:25045900-25045919 | MS.gene44369:CDS | 40.0% | |
| CTTCCTCCATTCCTTTCTTA+TGG | - | chr5.1:25046708-25046727 | None:intergenic | 40.0% | |
| GAAATGCGAATTCTGATGGT+TGG | + | chr5.1:25045938-25045957 | MS.gene44369:CDS | 40.0% | |
| GAAGGAAATGCGAATTCTGA+TGG | + | chr5.1:25045934-25045953 | MS.gene44369:CDS | 40.0% | |
| GCCGAAATTACTGACAAGTT+GGG | + | chr5.1:25047875-25047894 | MS.gene44369:CDS | 40.0% | |
| TCGTGGATAGCAGAAAATAG+TGG | - | chr5.1:25046935-25046954 | None:intergenic | 40.0% | |
| TGCCGAAATTACTGACAAGT+TGG | + | chr5.1:25047874-25047893 | MS.gene44369:CDS | 40.0% | |
| ! | AGAACATTAGCTTCACCGTT+TGG | + | chr5.1:25047155-25047174 | MS.gene44369:CDS | 40.0% |
| ! | ATACGAACTAAGGGAGTACA+TGG | - | chr5.1:25046436-25046455 | None:intergenic | 40.0% |
| ! | GAACATTAGCTTCACCGTTT+GGG | + | chr5.1:25047156-25047175 | MS.gene44369:CDS | 40.0% |
| ! | TCAGGGTCTTATATTTGTCG+TGG | + | chr5.1:25047358-25047377 | MS.gene44369:CDS | 40.0% |
| ! | TCTGAGATCCCAAAGTATGT+TGG | + | chr5.1:25046392-25046411 | MS.gene44369:intron | 40.0% |
| ! | TTGGAAAGTGTAGTCAATCG+TGG | - | chr5.1:25046952-25046971 | None:intergenic | 40.0% |
| ! | TTTTACAGATTCGTCCACTG+TGG | + | chr5.1:25047315-25047334 | MS.gene44369:intron | 40.0% |
| !! | AATACTCTTCTGGTTCTTCC+AGG | + | chr5.1:25047985-25048004 | MS.gene44369:intron | 40.0% |
| !! | GGCATATTTGGTGTCATAGT+AGG | + | chr5.1:25046140-25046159 | MS.gene44369:intron | 40.0% |
| !! | TGTGATCTTTGGAATCGCTT+AGG | + | chr5.1:25048318-25048337 | MS.gene44369:intron | 40.0% |
| !!! | GATCACACTCTTGCTTTTTC+TGG | - | chr5.1:25048305-25048324 | None:intergenic | 40.0% |
| AATATGGCTCGCTGTGATTC+TGG | + | chr5.1:25046175-25046194 | MS.gene44369:intron | 45.0% | |
| AGGGTTCAATGTGGAAACTG+TGG | + | chr5.1:25047126-25047145 | MS.gene44369:intron | 45.0% | |
| CACTACTTCCAGAACACTCA+GGG | + | chr5.1:25047341-25047360 | MS.gene44369:CDS | 45.0% | |
| CACTGTGCAATGTGTCTTTG+TGG | + | chr5.1:25048194-25048213 | MS.gene44369:intron | 45.0% | |
| CTCCAAGCTTGAGCTTGTAA+AGG | - | chr5.1:25045991-25046010 | None:intergenic | 45.0% | |
| CTTGAGCTTGTAAAGGATGG+TGG | - | chr5.1:25045984-25046003 | None:intergenic | 45.0% | |
| GCTATAGCACTAGTGTGTAG+TGG | + | chr5.1:25046897-25046916 | MS.gene44369:intron | 45.0% | |
| GTCTCTATGAAGGTTTGGAC+TGG | + | chr5.1:25048042-25048061 | MS.gene44369:CDS | 45.0% | |
| TCGGCAGCATTCATTGCATT+TGG | - | chr5.1:25047860-25047879 | None:intergenic | 45.0% | |
| ! | ACTAAGGGAGTACATGGCAT+TGG | - | chr5.1:25046430-25046449 | None:intergenic | 45.0% |
| ! | GATATCATAGTGGGAATGCC+AGG | + | chr5.1:25046119-25046138 | MS.gene44369:intron | 45.0% |
| !! | GCTTCGTGTCCAGTATTGAT+TGG | + | chr5.1:25047947-25047966 | MS.gene44369:intron | 45.0% |
| CAGTCGGTTATTCGCGAAGA+AGG | + | chr5.1:25045916-25045935 | MS.gene44369:CDS | 50.0% | |
| CTTACCAATGGTAGGGATGG+TGG | - | chr5.1:25046023-25046042 | None:intergenic | 50.0% | |
| GCACTACTTCCAGAACACTC+AGG | + | chr5.1:25047340-25047359 | MS.gene44369:CDS | 50.0% | |
| GGAGGGTCTCTATGAAGGTT+TGG | + | chr5.1:25048037-25048056 | MS.gene44369:CDS | 50.0% | |
| GTGGGAATGCCAGGCATATT+TGG | + | chr5.1:25046128-25046147 | MS.gene44369:intron | 50.0% | |
| TACAGATTCGTCCACTGTGG+AGG | + | chr5.1:25047318-25047337 | MS.gene44369:intron | 50.0% | |
| TGTCGTGGACAGCAATGACA+GGG | + | chr5.1:25047373-25047392 | MS.gene44369:CDS | 50.0% | |
| TTGGCCTCCAACATCCCAAA+CGG | - | chr5.1:25047173-25047192 | None:intergenic | 50.0% | |
| TTGTCGTGGACAGCAATGAC+AGG | + | chr5.1:25047372-25047391 | MS.gene44369:CDS | 50.0% | |
| ! | AGCTTCACCGTTTGGGATGT+TGG | + | chr5.1:25047163-25047182 | MS.gene44369:CDS | 50.0% |
| ! | TTCACCGTTTGGGATGTTGG+AGG | + | chr5.1:25047166-25047185 | MS.gene44369:CDS | 50.0% |
| !! | TCTGATGGTTGGTCTCGATG+CGG | + | chr5.1:25045949-25045968 | MS.gene44369:CDS | 50.0% |
| ACCTTCATAGAGACCCTCCC+CGG | - | chr5.1:25048036-25048055 | None:intergenic | 55.0% | |
| GGATGTTGGAGGCCAAGACA+AGG | + | chr5.1:25047177-25047196 | MS.gene44369:CDS | 55.0% | |
| GTCACCACCATCCCTACCAT+TGG | + | chr5.1:25046016-25046035 | MS.gene44369:CDS | 55.0% | |
| TGGAAGTAGTGCCTCCACAG+TGG | - | chr5.1:25047332-25047351 | None:intergenic | 55.0% | |
| ! | ACAGGTGCTCTGGATGTACC+TGG | - | chr5.1:25048006-25048025 | None:intergenic | 55.0% |
| ! | AGAGCACCTGTGCAACTTCC+GGG | + | chr5.1:25048015-25048034 | MS.gene44369:CDS | 55.0% |
| ! | CAGAGCACCTGTGCAACTTC+CGG | + | chr5.1:25048014-25048033 | MS.gene44369:CDS | 55.0% |
| ACCTGTGCAACTTCCGGGGA+GGG | + | chr5.1:25048020-25048039 | MS.gene44369:CDS | 60.0% | |
| CGGAAGTTGCACAGGTGCTC+TGG | - | chr5.1:25048016-25048035 | None:intergenic | 60.0% | |
| GAGCACCTGTGCAACTTCCG+GGG | + | chr5.1:25048016-25048035 | MS.gene44369:CDS | 60.0% | |
| TCCGGGGAGGGTCTCTATGA+AGG | + | chr5.1:25048032-25048051 | MS.gene44369:CDS | 60.0% | |
| !! | ACTCTCTGAGACAGCGCCAC+TGG | + | chr5.1:25047903-25047922 | MS.gene44369:CDS | 60.0% |
| !! | ATGGTTGGTCTCGATGCGGC+TGG | + | chr5.1:25045953-25045972 | MS.gene44369:CDS | 60.0% |
| ACCCTCCCCGGAAGTTGCAC+AGG | - | chr5.1:25048024-25048043 | None:intergenic | 65.0% | |
| CACCTGTGCAACTTCCGGGG+AGG | + | chr5.1:25048019-25048038 | MS.gene44369:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 25045890 | 25048381 | 25045890 | ID=MS.gene44369 |
| chr5.1 | mRNA | 25045890 | 25048381 | 25045890 | ID=MS.gene44369.t1;Parent=MS.gene44369 |
| chr5.1 | exon | 25045890 | 25046037 | 25045890 | ID=MS.gene44369.t1.exon1;Parent=MS.gene44369.t1 |
| chr5.1 | CDS | 25045890 | 25046037 | 25045890 | ID=cds.MS.gene44369.t1;Parent=MS.gene44369.t1 |
| chr5.1 | exon | 25047128 | 25047198 | 25047128 | ID=MS.gene44369.t1.exon2;Parent=MS.gene44369.t1 |
| chr5.1 | CDS | 25047128 | 25047198 | 25047128 | ID=cds.MS.gene44369.t1;Parent=MS.gene44369.t1 |
| chr5.1 | exon | 25047323 | 25047442 | 25047323 | ID=MS.gene44369.t1.exon3;Parent=MS.gene44369.t1 |
| chr5.1 | CDS | 25047323 | 25047442 | 25047323 | ID=cds.MS.gene44369.t1;Parent=MS.gene44369.t1 |
| chr5.1 | exon | 25047806 | 25047924 | 25047806 | ID=MS.gene44369.t1.exon4;Parent=MS.gene44369.t1 |
| chr5.1 | CDS | 25047806 | 25047924 | 25047806 | ID=cds.MS.gene44369.t1;Parent=MS.gene44369.t1 |
| chr5.1 | exon | 25048007 | 25048088 | 25048007 | ID=MS.gene44369.t1.exon5;Parent=MS.gene44369.t1 |
| chr5.1 | CDS | 25048007 | 25048088 | 25048007 | ID=cds.MS.gene44369.t1;Parent=MS.gene44369.t1 |
| chr5.1 | exon | 25048376 | 25048381 | 25048376 | ID=MS.gene44369.t1.exon6;Parent=MS.gene44369.t1 |
| chr5.1 | CDS | 25048376 | 25048381 | 25048376 | ID=cds.MS.gene44369.t1;Parent=MS.gene44369.t1 |
| Gene Sequence |
| Protein sequence |
