Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027645.t1 | RZB99279.1 | 100 | 181 | 0 | 0 | 1 | 181 | 17 | 197 | 3.60E-98 | 367.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027645.t1 | P51823 | 99.4 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 2.6e-100 | 365.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027645.t1 | A0A1U7V2M3 | 100.0 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 2.6e-98 | 367.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027645.t1 | MTR_5g034130 | 100.000 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 2.62e-135 | 375 |
| MS.gene027645.t1 | MTR_5g034125 | 100.000 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 2.62e-135 | 375 |
| MS.gene027645.t1 | MTR_1g086480 | 99.448 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 6.88e-135 | 374 |
| MS.gene027645.t1 | MTR_6g005820 | 99.448 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 9.56e-135 | 374 |
| MS.gene027645.t1 | MTR_7g109960 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 6.38e-134 | 372 |
| MS.gene027645.t1 | MTR_5g016540 | 87.222 | 180 | 23 | 0 | 1 | 180 | 1 | 180 | 1.47e-120 | 338 |
| MS.gene027645.t1 | MTR_4g128910 | 63.277 | 177 | 65 | 0 | 1 | 177 | 1 | 177 | 3.37e-84 | 246 |
| MS.gene027645.t1 | MTR_5g007810 | 61.582 | 177 | 68 | 0 | 1 | 177 | 1 | 177 | 4.35e-83 | 244 |
| MS.gene027645.t1 | MTR_4g077640 | 60.452 | 177 | 70 | 0 | 1 | 177 | 1 | 177 | 2.31e-80 | 237 |
| MS.gene027645.t1 | MTR_5g007820 | 55.495 | 182 | 79 | 1 | 1 | 180 | 1 | 182 | 2.90e-75 | 224 |
| MS.gene027645.t1 | MTR_1g076550 | 51.934 | 181 | 87 | 0 | 1 | 181 | 1 | 181 | 1.18e-67 | 204 |
| MS.gene027645.t1 | MTR_5g007840 | 42.723 | 213 | 77 | 2 | 1 | 180 | 1 | 201 | 8.01e-57 | 177 |
| MS.gene027645.t1 | MTR_8g077540 | 48.485 | 165 | 82 | 3 | 18 | 180 | 17 | 180 | 1.01e-49 | 159 |
| MS.gene027645.t1 | MTR_8g077540 | 48.485 | 165 | 82 | 3 | 18 | 180 | 43 | 206 | 1.51e-49 | 159 |
| MS.gene027645.t1 | MTR_2g022200 | 34.831 | 178 | 105 | 2 | 5 | 173 | 5 | 180 | 4.22e-37 | 127 |
| MS.gene027645.t1 | MTR_5g078090 | 34.091 | 176 | 113 | 2 | 1 | 173 | 1 | 176 | 1.05e-30 | 110 |
| MS.gene027645.t1 | MTR_5g015370 | 32.065 | 184 | 122 | 2 | 1 | 181 | 1 | 184 | 5.42e-30 | 108 |
| MS.gene027645.t1 | MTR_8g077540 | 51.020 | 98 | 46 | 2 | 18 | 114 | 17 | 113 | 1.85e-28 | 103 |
| MS.gene027645.t1 | MTR_4g026950 | 31.847 | 157 | 106 | 1 | 18 | 173 | 1 | 157 | 5.08e-26 | 97.8 |
| MS.gene027645.t1 | MTR_2g034640 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 1.01e-24 | 95.5 |
| MS.gene027645.t1 | MTR_7g112090 | 31.073 | 177 | 106 | 2 | 15 | 177 | 18 | 192 | 2.77e-24 | 94.4 |
| MS.gene027645.t1 | MTR_4g121860 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 7.47e-23 | 90.5 |
| MS.gene027645.t1 | MTR_1g062760 | 34.118 | 85 | 52 | 1 | 18 | 98 | 15 | 99 | 2.54e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027645.t1 | AT5G14670 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 1.28e-133 | 371 |
| MS.gene027645.t1 | AT5G14670 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 1.28e-133 | 371 |
| MS.gene027645.t1 | AT1G10630 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 1.56e-133 | 371 |
| MS.gene027645.t1 | AT1G10630 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 1.56e-133 | 371 |
| MS.gene027645.t1 | AT3G62290 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.34e-133 | 370 |
| MS.gene027645.t1 | AT3G62290 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.34e-133 | 370 |
| MS.gene027645.t1 | AT3G62290 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.34e-133 | 370 |
| MS.gene027645.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene027645.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene027645.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene027645.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene027645.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene027645.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene027645.t1 | AT1G23490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene027645.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene027645.t1 | AT2G47170 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 3.91e-133 | 370 |
| MS.gene027645.t1 | AT2G47170 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 3.91e-133 | 370 |
| MS.gene027645.t1 | AT2G47170 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 3.91e-133 | 370 |
| MS.gene027645.t1 | AT5G14670 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 1.05e-132 | 369 |
| MS.gene027645.t1 | AT2G15310 | 67.403 | 181 | 59 | 0 | 1 | 181 | 1 | 181 | 2.79e-91 | 265 |
| MS.gene027645.t1 | AT2G24765 | 62.147 | 177 | 67 | 0 | 1 | 177 | 1 | 177 | 1.42e-84 | 247 |
| MS.gene027645.t1 | AT5G17060 | 58.659 | 179 | 74 | 0 | 1 | 179 | 1 | 179 | 3.19e-81 | 239 |
| MS.gene027645.t1 | AT5G17060 | 58.659 | 179 | 74 | 0 | 1 | 179 | 1 | 179 | 3.19e-81 | 239 |
| MS.gene027645.t1 | AT3G03120 | 60.452 | 177 | 70 | 0 | 1 | 177 | 1 | 177 | 4.48e-81 | 239 |
| MS.gene027645.t1 | AT3G22950 | 53.039 | 181 | 85 | 0 | 1 | 181 | 1 | 181 | 1.15e-70 | 212 |
| MS.gene027645.t1 | AT3G22950 | 53.039 | 181 | 85 | 0 | 1 | 181 | 1 | 181 | 1.15e-70 | 212 |
| MS.gene027645.t1 | AT2G24765 | 64.844 | 128 | 45 | 0 | 1 | 128 | 1 | 128 | 1.19e-60 | 185 |
| MS.gene027645.t1 | AT3G03120 | 63.077 | 130 | 48 | 0 | 1 | 130 | 1 | 130 | 4.95e-60 | 183 |
| MS.gene027645.t1 | AT1G02430 | 48.936 | 188 | 82 | 5 | 1 | 176 | 1 | 186 | 9.40e-57 | 177 |
| MS.gene027645.t1 | AT1G02440 | 46.237 | 186 | 90 | 4 | 1 | 176 | 1 | 186 | 7.38e-56 | 175 |
| MS.gene027645.t1 | AT2G18390 | 48.485 | 165 | 82 | 3 | 18 | 180 | 17 | 180 | 3.51e-49 | 157 |
| MS.gene027645.t1 | AT1G02430 | 47.205 | 161 | 75 | 4 | 1 | 153 | 1 | 159 | 5.08e-45 | 146 |
| MS.gene027645.t1 | AT5G52210 | 34.091 | 176 | 109 | 1 | 5 | 173 | 5 | 180 | 6.65e-36 | 124 |
| MS.gene027645.t1 | AT5G52210 | 34.091 | 176 | 109 | 1 | 5 | 173 | 5 | 180 | 6.65e-36 | 124 |
| MS.gene027645.t1 | AT3G49870 | 34.091 | 176 | 113 | 2 | 1 | 173 | 1 | 176 | 3.21e-32 | 114 |
| MS.gene027645.t1 | AT5G67560 | 33.742 | 163 | 107 | 1 | 12 | 173 | 14 | 176 | 2.52e-31 | 112 |
| MS.gene027645.t1 | AT5G37680 | 33.742 | 163 | 107 | 1 | 12 | 173 | 14 | 176 | 4.83e-30 | 108 |
| MS.gene027645.t1 | AT3G49870 | 33.121 | 157 | 104 | 1 | 18 | 173 | 1 | 157 | 5.25e-29 | 105 |
| MS.gene027645.t1 | AT3G49860 | 32.530 | 166 | 111 | 1 | 16 | 180 | 10 | 175 | 2.42e-28 | 104 |
| MS.gene027645.t1 | AT1G02440 | 33.766 | 154 | 66 | 3 | 1 | 153 | 1 | 119 | 1.15e-26 | 98.6 |
| MS.gene027645.t1 | AT1G09180 | 32.961 | 179 | 104 | 2 | 13 | 177 | 16 | 192 | 2.74e-25 | 97.1 |
| MS.gene027645.t1 | AT3G62560 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 1.22e-24 | 95.1 |
| MS.gene027645.t1 | AT5G37680 | 32.812 | 128 | 86 | 0 | 46 | 173 | 2 | 129 | 4.55e-24 | 92.0 |
| MS.gene027645.t1 | AT1G56330 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 4.74e-24 | 93.6 |
| MS.gene027645.t1 | AT4G02080 | 31.073 | 177 | 106 | 2 | 15 | 177 | 18 | 192 | 5.17e-24 | 93.6 |
Find 52 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCAACAACATTGCCAATA+AGG | 0.283068 | 5.2:+24088182 | MS.gene027645:CDS |
| GAAACCAATAGCTACCTTAT+TGG | 0.327478 | 5.2:-24088196 | None:intergenic |
| ATATAAGACCCTGAGTGTTC+TGG | 0.338828 | 5.2:-24087244 | None:intergenic |
| AGAACATTAGCTTCACTGTT+TGG | 0.346877 | 5.2:+24087052 | MS.gene027645:CDS |
| GAACATTAGCTTCACTGTTT+GGG | 0.346980 | 5.2:+24087053 | MS.gene027645:CDS |
| CAGTCGGTTATTTGCGAAGA+AGG | 0.396684 | 5.2:+24086180 | MS.gene027645:CDS |
| CTCAGCTGCATTCATTGCAT+TGG | 0.411804 | 5.2:-24087970 | None:intergenic |
| CAGAGCACTTGTGCCACCTC+TGG | 0.413296 | 5.2:+24088129 | MS.gene027645:CDS |
| TACCTTATTGGCAATGTTGT+TGG | 0.415485 | 5.2:-24088184 | None:intergenic |
| AGCTTCACTGTTTGGGATGT+CGG | 0.421764 | 5.2:+24087060 | MS.gene027645:CDS |
| CCAAGAAACTTACCGATAGT+AGG | 0.449062 | 5.2:-24086292 | None:intergenic |
| TCAGCTGCATTCATTGCATT+GGG | 0.455488 | 5.2:-24087969 | None:intergenic |
| TTGAATAAAATACCTTGTCC+TGG | 0.462109 | 5.2:-24087086 | None:intergenic |
| GGAGGGTCTTTATGAAGGTC+TGG | 0.465424 | 5.2:+24088152 | MS.gene027645:CDS |
| AGCTGAGATTACTGACAAGC+TGG | 0.467998 | 5.2:+24087986 | MS.gene027645:CDS |
| CACTTGTGCCACCTCTGGGG+AGG | 0.474754 | 5.2:+24088134 | MS.gene027645:CDS |
| ACTTGTGCCACCTCTGGGGA+GGG | 0.483489 | 5.2:+24088135 | MS.gene027645:CDS |
| CATCCTATGTAGCTCATCTC+TGG | 0.489228 | 5.2:-24087306 | None:intergenic |
| TGTTTGGGATGTCGGAGGCC+AGG | 0.494393 | 5.2:+24087068 | MS.gene027645:CDS |
| TTGTCGTTGACAGCAATGAC+AGG | 0.500098 | 5.2:+24087267 | MS.gene027645:CDS |
| ATTCTCTACAAGCTCAAGCT+TGG | 0.503263 | 5.2:+24086250 | MS.gene027645:CDS |
| GTCTTTATGAAGGTCTGGAC+TGG | 0.504629 | 5.2:+24088157 | MS.gene027645:CDS |
| ATTGGGAAGATCTTGTTTGT+TGG | 0.504874 | 5.2:-24087952 | None:intergenic |
| TTCTCCAGATCCGTCCCTTG+TGG | 0.505460 | 5.2:+24087210 | MS.gene027645:intron |
| AGAGCACTTGTGCCACCTCT+GGG | 0.506189 | 5.2:+24088130 | MS.gene027645:CDS |
| AAGCTTGAGCTTGTAGAGAA+TGG | 0.532263 | 5.2:-24086248 | None:intergenic |
| TCTGGGGAGGGTCTTTATGA+AGG | 0.537610 | 5.2:+24088147 | MS.gene027645:CDS |
| ACTCTCTCAGACAGCGCCAC+TGG | 0.541563 | 5.2:+24088015 | MS.gene027645:CDS |
| CAAGAAACTTACCGATAGTA+GGG | 0.545597 | 5.2:-24086291 | None:intergenic |
| AGGCCAGAGATGAGCTACAT+AGG | 0.552666 | 5.2:+24087303 | MS.gene027645:CDS |
| ATGGTTGGTCTCGATGCAGC+TGG | 0.565190 | 5.2:+24086217 | MS.gene027645:CDS |
| CATTCACGAAGCTGTTCAGT+CGG | 0.566942 | 5.2:+24086164 | MS.gene027645:CDS |
| TCCAGATCCGTCCCTTGTGG+AGG | 0.578144 | 5.2:+24087213 | MS.gene027645:intron |
| CTGGAAGTAGTGCCTCCACA+AGG | 0.582344 | 5.2:-24087225 | None:intergenic |
| AGTAGTGCCTCCACAAGGGA+CGG | 0.589421 | 5.2:-24087220 | None:intergenic |
| GTCACCACCATCCCTACTAT+CGG | 0.594267 | 5.2:+24086280 | MS.gene027645:CDS |
| GCACTACTTCCAGAACACTC+AGG | 0.597040 | 5.2:+24087235 | MS.gene027645:CDS |
| TGACAGGGATAGAGTTGTTG+AGG | 0.602509 | 5.2:+24087283 | MS.gene027645:CDS |
| CACTACTTCCAGAACACTCA+GGG | 0.606230 | 5.2:+24087236 | MS.gene027645:CDS |
| GGATGTCGGAGGCCAGGACA+AGG | 0.616890 | 5.2:+24087074 | MS.gene027645:CDS |
| AAACTTACCGATAGTAGGGA+TGG | 0.618750 | 5.2:-24086287 | None:intergenic |
| TTCACTGTTTGGGATGTCGG+AGG | 0.622949 | 5.2:+24087063 | MS.gene027645:CDS |
| TGTCGTTGACAGCAATGACA+GGG | 0.631238 | 5.2:+24087268 | MS.gene027645:CDS |
| AGGGTTCAATGTGGAGACTG+TGG | 0.633133 | 5.2:+24087023 | MS.gene027645:intron |
| GCTACATAGGATGTTGAATG+AGG | 0.633182 | 5.2:+24087316 | MS.gene027645:CDS |
| ATAAAGACCCTCCCCAGAGG+TGG | 0.635325 | 5.2:-24088142 | None:intergenic |
| CTTGAGCTTGTAGAGAATGG+TGG | 0.640954 | 5.2:-24086245 | None:intergenic |
| GCTGAGATTACTGACAAGCT+GGG | 0.649547 | 5.2:+24087987 | MS.gene027645:CDS |
| CTTACCGATAGTAGGGATGG+TGG | 0.656172 | 5.2:-24086284 | None:intergenic |
| GAGCACTTGTGCCACCTCTG+GGG | 0.692264 | 5.2:+24088131 | MS.gene027645:CDS |
| TTCATAAAGACCCTCCCCAG+AGG | 0.695022 | 5.2:-24088145 | None:intergenic |
| TGGAAGTAGTGCCTCCACAA+GGG | 0.700224 | 5.2:-24087224 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTAAATAATTAT+CGG | - | chr5.2:24086414-24086433 | None:intergenic | 0.0% |
| !!! | TTATTTTATATTTTAATTTA+GGG | + | chr5.2:24087004-24087023 | MS.gene027645:intron | 0.0% |
| !!! | TTTATTTTATATTTTAATTT+AGG | + | chr5.2:24087003-24087022 | MS.gene027645:intron | 0.0% |
| !! | TAAAAAATAAAAATAGAGAT+GGG | - | chr5.2:24088224-24088243 | None:intergenic | 10.0% |
| !! | TACTTCAAAAAAAAAAAAAA+GGG | - | chr5.2:24088458-24088477 | None:intergenic | 10.0% |
| !! | TTAAAAAATAAAAATAGAGA+TGG | - | chr5.2:24088225-24088244 | None:intergenic | 10.0% |
| !! | TTACTTCAAAAAAAAAAAAA+AGG | - | chr5.2:24088459-24088478 | None:intergenic | 10.0% |
| !!! | AATTGGAAATATATTAATTT+TGG | - | chr5.2:24088398-24088417 | None:intergenic | 10.0% |
| !! | AAATTGTATAAATGTGTATA+TGG | + | chr5.2:24088370-24088389 | MS.gene027645:intron | 15.0% |
| !! | AATTGTATAAATGTGTATAT+GGG | + | chr5.2:24088371-24088390 | MS.gene027645:intron | 15.0% |
| !! | GATTTCATTGTTAAATATAA+AGG | - | chr5.2:24086642-24086661 | None:intergenic | 15.0% |
| !!! | AGACTAATTTATTTACTTTT+TGG | + | chr5.2:24088332-24088351 | MS.gene027645:intron | 15.0% |
| !!! | ATGTTTAATTTAAACTTGAT+GGG | + | chr5.2:24086868-24086887 | MS.gene027645:intron | 15.0% |
| !! | AATCAAAATTCATTTCAAAC+AGG | - | chr5.2:24086365-24086384 | None:intergenic | 20.0% |
| !! | ACAATATATGACATAAAGTT+TGG | - | chr5.2:24086665-24086684 | None:intergenic | 20.0% |
| !! | ATTATCAAATTATTTACCAG+TGG | - | chr5.2:24088034-24088053 | None:intergenic | 20.0% |
| !! | ATTTATTGAGCATTTCAAAT+AGG | - | chr5.2:24088491-24088510 | None:intergenic | 20.0% |
| !! | CAATATATGACATAAAGTTT+GGG | - | chr5.2:24086664-24086683 | None:intergenic | 20.0% |
| !! | CATCAAGTTTAAATTAAACA+TGG | - | chr5.2:24086869-24086888 | None:intergenic | 20.0% |
| !! | TAAACAATCATTGAGTTATA+TGG | - | chr5.2:24086566-24086585 | None:intergenic | 20.0% |
| !! | TACAAGAACTAGAAATATTA+TGG | + | chr5.2:24088419-24088438 | MS.gene027645:intron | 20.0% |
| !! | TACTTATGCAATACTTATTA+GGG | + | chr5.2:24088614-24088633 | MS.gene027645:intron | 20.0% |
| !!! | ATTTCTAGTTCTTGTAAAAT+TGG | - | chr5.2:24088415-24088434 | None:intergenic | 20.0% |
| !!! | CATGTTTAATTTAAACTTGA+TGG | + | chr5.2:24086867-24086886 | MS.gene027645:intron | 20.0% |
| !!! | TAATAAGTATTGCATAAGTA+GGG | - | chr5.2:24088614-24088633 | None:intergenic | 20.0% |
| !!! | TAATTAATCCATGTTTTTAC+TGG | + | chr5.2:24087658-24087677 | MS.gene027645:intron | 20.0% |
| !!! | TACTTTTCTTATATTCAGTT+TGG | + | chr5.2:24087339-24087358 | MS.gene027645:intron | 20.0% |
| ! | AAAATAAAAATAGAGATGGG+AGG | - | chr5.2:24088221-24088240 | None:intergenic | 25.0% |
| ! | AATATGATCCAGTAAAAACA+TGG | - | chr5.2:24087669-24087688 | None:intergenic | 25.0% |
| ! | AATTTGTAGTTTGATAGACA+TGG | + | chr5.2:24088526-24088545 | MS.gene027645:intron | 25.0% |
| ! | ACTTATGCAATACTTATTAG+GGG | + | chr5.2:24088615-24088634 | MS.gene027645:intron | 25.0% |
| ! | ATAATGCTACATGTAGTATT+TGG | + | chr5.2:24088049-24088068 | MS.gene027645:intron | 25.0% |
| ! | ATGGATGAAATTACATGTTA+AGG | - | chr5.2:24086850-24086869 | None:intergenic | 25.0% |
| ! | CTACTTATGCAATACTTATT+AGG | + | chr5.2:24088613-24088632 | MS.gene027645:intron | 25.0% |
| ! | GTTAAGTTCATTCATGTTTA+TGG | + | chr5.2:24086815-24086834 | MS.gene027645:intron | 25.0% |
| ! | TCAACTATAATGACTTTGTT+TGG | + | chr5.2:24086726-24086745 | MS.gene027645:intron | 25.0% |
| ! | TGGATGAAATTACATGTTAA+GGG | - | chr5.2:24086849-24086868 | None:intergenic | 25.0% |
| !! | CTAATAAGTATTGCATAAGT+AGG | - | chr5.2:24088615-24088634 | None:intergenic | 25.0% |
| !! | GATAAAATCAACATTTTCCT+GGG | - | chr5.2:24088265-24088284 | None:intergenic | 25.0% |
| !! | TCTCATTTGAAATATGCATT+TGG | + | chr5.2:24086773-24086792 | MS.gene027645:intron | 25.0% |
| !! | TTACTTAGTAGTCTTTTTGT+GGG | + | chr5.2:24088643-24088662 | MS.gene027645:intron | 25.0% |
| !! | TTTACTTAGTAGTCTTTTTG+TGG | + | chr5.2:24088642-24088661 | MS.gene027645:intron | 25.0% |
| !!! | TTTTAATTTAGGGTTCAATG+TGG | + | chr5.2:24087014-24087033 | MS.gene027645:intron | 25.0% |
| ATCAGAAGCAGTAAATTCAT+AGG | - | chr5.2:24087760-24087779 | None:intergenic | 30.0% | |
| ATTAACAGCAACAATGATGA+AGG | - | chr5.2:24087642-24087661 | None:intergenic | 30.0% | |
| GAGTTGAGATAGAAAGATAT+AGG | + | chr5.2:24087468-24087487 | MS.gene027645:intron | 30.0% | |
| TAAAACACGAGAAAGAATTG+AGG | + | chr5.2:24088792-24088811 | MS.gene027645:intron | 30.0% | |
| TAACATTGAATGTGATCAAG+TGG | + | chr5.2:24086584-24086603 | MS.gene027645:intron | 30.0% | |
| TACTATAGTGAAAGACAGAA+AGG | - | chr5.2:24087167-24087186 | None:intergenic | 30.0% | |
| TATGAGTGAAAACGTCTAAA+TGG | - | chr5.2:24087404-24087423 | None:intergenic | 30.0% | |
| TCAATCACATTGTTGTGTAT+TGG | + | chr5.2:24086447-24086466 | MS.gene027645:intron | 30.0% | |
| TCAGAAGCAGTAAATTCATA+GGG | - | chr5.2:24087759-24087778 | None:intergenic | 30.0% | |
| TTAACAGCAACAATGATGAA+GGG | - | chr5.2:24087641-24087660 | None:intergenic | 30.0% | |
| TTCTAGATCATAATGTTCAC+TGG | + | chr5.2:24087559-24087578 | MS.gene027645:intron | 30.0% | |
| TTGAATAAAATACCTTGTCC+TGG | - | chr5.2:24087089-24087108 | None:intergenic | 30.0% | |
| TTTATAGCCAAGAACTAAGA+AGG | - | chr5.2:24088776-24088795 | None:intergenic | 30.0% | |
| ! | CTGTGTATTAATCTGTCTTT+TGG | + | chr5.2:24087701-24087720 | MS.gene027645:intron | 30.0% |
| ! | GGATAAAATCAACATTTTCC+TGG | - | chr5.2:24088266-24088285 | None:intergenic | 30.0% |
| ! | TACTTAGTAGTCTTTTTGTG+GGG | + | chr5.2:24088644-24088663 | MS.gene027645:intron | 30.0% |
| ! | TCTTTTGGTACTTGAATGAT+CGG | + | chr5.2:24087716-24087735 | MS.gene027645:intron | 30.0% |
| ! | TGCAATAATTGAGTGCTTTT+AGG | + | chr5.2:24088290-24088309 | MS.gene027645:intron | 30.0% |
| ! | TTGCAAGTTTTGCTTATGTA+TGG | + | chr5.2:24086384-24086403 | MS.gene027645:intron | 30.0% |
| AATATGTTTAGGTGCTCAGA+AGG | - | chr5.2:24088679-24088698 | None:intergenic | 35.0% | |
| AATGAAGACGAAATAGAAGC+AGG | - | chr5.2:24088705-24088724 | None:intergenic | 35.0% | |
| AGCACTCAATTATTGCATCT+TGG | - | chr5.2:24088287-24088306 | None:intergenic | 35.0% | |
| ATAGTGAAAGACAGAAAGGA+GGG | - | chr5.2:24087163-24087182 | None:intergenic | 35.0% | |
| ATATGTTTAGGTGCTCAGAA+GGG | - | chr5.2:24088678-24088697 | None:intergenic | 35.0% | |
| ATGCAATACTTATTAGGGGT+TGG | + | chr5.2:24088619-24088638 | MS.gene027645:intron | 35.0% | |
| ATTGCCAATAAGGTAGCTAT+TGG | + | chr5.2:24088192-24088211 | MS.gene027645:intron | 35.0% | |
| CAAGAAACTTACCGATAGTA+GGG | - | chr5.2:24086294-24086313 | None:intergenic | 35.0% | |
| CACACAAATAATTGCCTACA+AGG | - | chr5.2:24086521-24086540 | None:intergenic | 35.0% | |
| CTCAACTCTCAACAAATTTG+TGG | - | chr5.2:24087456-24087475 | None:intergenic | 35.0% | |
| CTGTCTTTCACTATAGTATG+TGG | + | chr5.2:24087169-24087188 | MS.gene027645:intron | 35.0% | |
| GAAACCAATAGCTACCTTAT+TGG | - | chr5.2:24088199-24088218 | None:intergenic | 35.0% | |
| GAACAAAAAAGAGAAGAGCA+TGG | - | chr5.2:24087851-24087870 | None:intergenic | 35.0% | |
| GAAGCAGGTAGAATATGTTT+AGG | - | chr5.2:24088690-24088709 | None:intergenic | 35.0% | |
| TACCTTATTGGCAATGTTGT+TGG | - | chr5.2:24088187-24088206 | None:intergenic | 35.0% | |
| TATAGTGAAAGACAGAAAGG+AGG | - | chr5.2:24087164-24087183 | None:intergenic | 35.0% | |
| TGCTTGTACAACTCTGATTT+GGG | + | chr5.2:24087517-24087536 | MS.gene027645:intron | 35.0% | |
| TTCCAACAACATTGCCAATA+AGG | + | chr5.2:24088182-24088201 | MS.gene027645:CDS | 35.0% | |
| TTGCTTGTACAACTCTGATT+TGG | + | chr5.2:24087516-24087535 | MS.gene027645:intron | 35.0% | |
| ! | ACTTAGTAGTCTTTTTGTGG+GGG | + | chr5.2:24088645-24088664 | MS.gene027645:intron | 35.0% |
| ! | AGAACATTAGCTTCACTGTT+TGG | + | chr5.2:24087052-24087071 | MS.gene027645:CDS | 35.0% |
| ! | ATTGGGAAGATCTTGTTTGT+TGG | - | chr5.2:24087955-24087974 | None:intergenic | 35.0% |
| ! | CACTATAGGTTTTTCCTTGT+AGG | + | chr5.2:24086504-24086523 | MS.gene027645:intron | 35.0% |
| ! | CACTTAAATGATTTTGTCCC+AGG | + | chr5.2:24088245-24088264 | MS.gene027645:intron | 35.0% |
| ! | GAACATTAGCTTCACTGTTT+GGG | + | chr5.2:24087053-24087072 | MS.gene027645:CDS | 35.0% |
| ! | GAAGGAAATGCGAATTTTGA+TGG | + | chr5.2:24086198-24086217 | MS.gene027645:CDS | 35.0% |
| !! | GAAATGCGAATTTTGATGGT+TGG | + | chr5.2:24086202-24086221 | MS.gene027645:CDS | 35.0% |
| AAACTTACCGATAGTAGGGA+TGG | - | chr5.2:24086290-24086309 | None:intergenic | 40.0% | |
| AAGCTTGAGCTTGTAGAGAA+TGG | - | chr5.2:24086251-24086270 | None:intergenic | 40.0% | |
| AATTTCTGTCGTGCTTCTCA+TGG | + | chr5.2:24087606-24087625 | MS.gene027645:intron | 40.0% | |
| ATATAAGACCCTGAGTGTTC+TGG | - | chr5.2:24087247-24087266 | None:intergenic | 40.0% | |
| ATTCTCTACAAGCTCAAGCT+TGG | + | chr5.2:24086250-24086269 | MS.gene027645:CDS | 40.0% | |
| ATTGGACACACGTTTCTGAA+TGG | + | chr5.2:24086465-24086484 | MS.gene027645:intron | 40.0% | |
| ATTTCTGTCGTGCTTCTCAT+GGG | + | chr5.2:24087607-24087626 | MS.gene027645:intron | 40.0% | |
| CATCTAGATGCCTAGAGTAT+GGG | - | chr5.2:24088571-24088590 | None:intergenic | 40.0% | |
| CCAAGAAACTTACCGATAGT+AGG | - | chr5.2:24086295-24086314 | None:intergenic | 40.0% | |
| CCTACTATCGGTAAGTTTCT+TGG | + | chr5.2:24086292-24086311 | MS.gene027645:intron | 40.0% | |
| CCTGCAATGATAGAAAACCA+GGG | - | chr5.2:24088831-24088850 | None:intergenic | 40.0% | |
| GCTACATAGGATGTTGAATG+AGG | + | chr5.2:24087316-24087335 | MS.gene027645:CDS | 40.0% | |
| TAGTGAAAGACAGAAAGGAG+GGG | - | chr5.2:24087162-24087181 | None:intergenic | 40.0% | |
| TATGTTTAGGTGCTCAGAAG+GGG | - | chr5.2:24088677-24088696 | None:intergenic | 40.0% | |
| TCAAATGAGAAGCTCTCGTA+AGG | - | chr5.2:24086763-24086782 | None:intergenic | 40.0% | |
| TCAGCTGCATTCATTGCATT+GGG | - | chr5.2:24087972-24087991 | None:intergenic | 40.0% | |
| TGTGTTCTAACAAACGCTTC+CGG | + | chr5.2:24088090-24088109 | MS.gene027645:intron | 40.0% | |
| ! | AGCGTTTGTTAGAACACAGT+AGG | - | chr5.2:24088088-24088107 | None:intergenic | 40.0% |
| ! | GGTGCTATGTAGTTCACTAT+AGG | + | chr5.2:24086490-24086509 | MS.gene027645:intron | 40.0% |
| ACAAGTGCTCTGTATGTACC+TGG | - | chr5.2:24088121-24088140 | None:intergenic | 45.0% | |
| AGCTGAGATTACTGACAAGC+TGG | + | chr5.2:24087986-24088005 | MS.gene027645:CDS | 45.0% | |
| AGTCTCACTAGTCCCAAATC+AGG | - | chr5.2:24088317-24088336 | None:intergenic | 45.0% | |
| AGTGAAAGACAGAAAGGAGG+GGG | - | chr5.2:24087161-24087180 | None:intergenic | 45.0% | |
| ATGTTTAGGTGCTCAGAAGG+GGG | - | chr5.2:24088676-24088695 | None:intergenic | 45.0% | |
| CACTACTTCCAGAACACTCA+GGG | + | chr5.2:24087236-24087255 | MS.gene027645:CDS | 45.0% | |
| CACTCATATAGACCGTGTAG+TGG | + | chr5.2:24087416-24087435 | MS.gene027645:intron | 45.0% | |
| CAGTCGGTTATTTGCGAAGA+AGG | + | chr5.2:24086180-24086199 | MS.gene027645:CDS | 45.0% | |
| CATCCTATGTAGCTCATCTC+TGG | - | chr5.2:24087309-24087328 | None:intergenic | 45.0% | |
| CATTCACGAAGCTGTTCAGT+CGG | + | chr5.2:24086164-24086183 | MS.gene027645:CDS | 45.0% | |
| CTCAGCTGCATTCATTGCAT+TGG | - | chr5.2:24087973-24087992 | None:intergenic | 45.0% | |
| CTTGAGCTTGTAGAGAATGG+TGG | - | chr5.2:24086248-24086267 | None:intergenic | 45.0% | |
| GACACACGTTTCTGAATGGT+CGG | + | chr5.2:24086469-24086488 | MS.gene027645:intron | 45.0% | |
| GAGGTCGCTTATTATTTCCC+TGG | + | chr5.2:24088811-24088830 | MS.gene027645:intron | 45.0% | |
| GCATCTAGATGCCTAGAGTA+TGG | - | chr5.2:24088572-24088591 | None:intergenic | 45.0% | |
| GCCTGCAATGATAGAAAACC+AGG | - | chr5.2:24088832-24088851 | None:intergenic | 45.0% | |
| GCTGAGATTACTGACAAGCT+GGG | + | chr5.2:24087987-24088006 | MS.gene027645:CDS | 45.0% | |
| GTCTCACTAGTCCCAAATCA+GGG | - | chr5.2:24088316-24088335 | None:intergenic | 45.0% | |
| GTCTTTATGAAGGTCTGGAC+TGG | + | chr5.2:24088157-24088176 | MS.gene027645:CDS | 45.0% | |
| GTGTTCTAACAAACGCTTCC+GGG | + | chr5.2:24088091-24088110 | MS.gene027645:intron | 45.0% | |
| TAAGCTCACACCCATACTCT+AGG | + | chr5.2:24088558-24088577 | MS.gene027645:intron | 45.0% | |
| TAGCCAAGAACTAAGAAGGC+TGG | - | chr5.2:24088772-24088791 | None:intergenic | 45.0% | |
| TCATATAGACCGTGTAGTGG+CGG | + | chr5.2:24087419-24087438 | MS.gene027645:intron | 45.0% | |
| TGACAGGGATAGAGTTGTTG+AGG | + | chr5.2:24087283-24087302 | MS.gene027645:CDS | 45.0% | |
| TGTCGTTGACAGCAATGACA+GGG | + | chr5.2:24087268-24087287 | MS.gene027645:CDS | 45.0% | |
| TTGTCGTTGACAGCAATGAC+AGG | + | chr5.2:24087267-24087286 | MS.gene027645:CDS | 45.0% | |
| ! | AGCTTCACTGTTTGGGATGT+CGG | + | chr5.2:24087060-24087079 | MS.gene027645:CDS | 45.0% |
| ! | AGTGCTTTTAGGCCCTGATT+TGG | + | chr5.2:24088301-24088320 | MS.gene027645:intron | 45.0% |
| ! | GTGCTTTTAGGCCCTGATTT+GGG | + | chr5.2:24088302-24088321 | MS.gene027645:intron | 45.0% |
| ! | TTGCCAGCCTTCTTAGTTCT+TGG | + | chr5.2:24088766-24088785 | MS.gene027645:intron | 45.0% |
| !! | CCCTGGTTTTCTATCATTGC+AGG | + | chr5.2:24088828-24088847 | MS.gene027645:intron | 45.0% |
| !! | TGAAATTATAATTAAAATAA+TGG | - | chr5.2:24087897-24087916 | None:intergenic | 5.0% |
| !!! | ATTATTTTAATTATAATTTC+AGG | + | chr5.2:24087896-24087915 | MS.gene027645:intron | 5.0% |
| !!! | TTTTTTTTTAAATAATTATC+GGG | - | chr5.2:24086413-24086432 | None:intergenic | 5.0% |
| AGGCCAGAGATGAGCTACAT+AGG | + | chr5.2:24087303-24087322 | MS.gene027645:CDS | 50.0% | |
| AGGGTTCAATGTGGAGACTG+TGG | + | chr5.2:24087023-24087042 | MS.gene027645:intron | 50.0% | |
| CATATAGACCGTGTAGTGGC+GGG | + | chr5.2:24087420-24087439 | MS.gene027645:intron | 50.0% | |
| CTGTATGTACCTGGAAGACC+CGG | - | chr5.2:24088112-24088131 | None:intergenic | 50.0% | |
| CTTACCGATAGTAGGGATGG+TGG | - | chr5.2:24086287-24086306 | None:intergenic | 50.0% | |
| GCACTACTTCCAGAACACTC+AGG | + | chr5.2:24087235-24087254 | MS.gene027645:CDS | 50.0% | |
| GGAGGGTCTTTATGAAGGTC+TGG | + | chr5.2:24088152-24088171 | MS.gene027645:CDS | 50.0% | |
| GTCACCACCATCCCTACTAT+CGG | + | chr5.2:24086280-24086299 | MS.gene027645:CDS | 50.0% | |
| GTGAAAGACAGAAAGGAGGG+GGG | - | chr5.2:24087160-24087179 | None:intergenic | 50.0% | |
| TCTGGGGAGGGTCTTTATGA+AGG | + | chr5.2:24088147-24088166 | MS.gene027645:CDS | 50.0% | |
| TGAAAGACAGAAAGGAGGGG+GGG | - | chr5.2:24087159-24087178 | None:intergenic | 50.0% | |
| TGGAAGTAGTGCCTCCACAA+GGG | - | chr5.2:24087227-24087246 | None:intergenic | 50.0% | |
| TTCATAAAGACCCTCCCCAG+AGG | - | chr5.2:24088148-24088167 | None:intergenic | 50.0% | |
| ! | AAGAGAAGAGCATGGACTCG+AGG | - | chr5.2:24087843-24087862 | None:intergenic | 50.0% |
| ! | TTCACTGTTTGGGATGTCGG+AGG | + | chr5.2:24087063-24087082 | MS.gene027645:CDS | 50.0% |
| !! | TGCAAGAGTGCTTCGCAGAA+AGG | + | chr5.2:24086944-24086963 | MS.gene027645:intron | 50.0% |
| AGTAGTGCCTCCACAAGGGA+CGG | - | chr5.2:24087223-24087242 | None:intergenic | 55.0% | |
| ATAAAGACCCTCCCCAGAGG+TGG | - | chr5.2:24088145-24088164 | None:intergenic | 55.0% | |
| CATTCCTTCCCGCCACTACA+CGG | - | chr5.2:24087431-24087450 | None:intergenic | 55.0% | |
| CTGGAAGTAGTGCCTCCACA+AGG | - | chr5.2:24087228-24087247 | None:intergenic | 55.0% | |
| TTCTCCAGATCCGTCCCTTG+TGG | + | chr5.2:24087210-24087229 | MS.gene027645:intron | 55.0% | |
| ! | AGAGCACTTGTGCCACCTCT+GGG | + | chr5.2:24088130-24088149 | MS.gene027645:CDS | 55.0% |
| !! | ATGGTTGGTCTCGATGCAGC+TGG | + | chr5.2:24086217-24086236 | MS.gene027645:CDS | 55.0% |
| ACTCTCTCAGACAGCGCCAC+TGG | + | chr5.2:24088015-24088034 | MS.gene027645:CDS | 60.0% | |
| CAAACGCTTCCGGGTCTTCC+AGG | + | chr5.2:24088100-24088119 | MS.gene027645:intron | 60.0% | |
| GAGCACTTGTGCCACCTCTG+GGG | + | chr5.2:24088131-24088150 | MS.gene027645:CDS | 60.0% | |
| TCCAGATCCGTCCCTTGTGG+AGG | + | chr5.2:24087213-24087232 | MS.gene027645:intron | 60.0% | |
| ! | ACTTGTGCCACCTCTGGGGA+GGG | + | chr5.2:24088135-24088154 | MS.gene027645:CDS | 60.0% |
| ! | CAGAGCACTTGTGCCACCTC+TGG | + | chr5.2:24088129-24088148 | MS.gene027645:CDS | 60.0% |
| ! | TAGACCGTGTAGTGGCGGGA+AGG | + | chr5.2:24087424-24087443 | MS.gene027645:intron | 60.0% |
| ! | TGTTTGGGATGTCGGAGGCC+AGG | + | chr5.2:24087068-24087087 | MS.gene027645:CDS | 60.0% |
| GCCTCCACAAGGGACGGATC+TGG | - | chr5.2:24087217-24087236 | None:intergenic | 65.0% | |
| GGATGTCGGAGGCCAGGACA+AGG | + | chr5.2:24087074-24087093 | MS.gene027645:CDS | 65.0% | |
| ! | CACTTGTGCCACCTCTGGGG+AGG | + | chr5.2:24088134-24088153 | MS.gene027645:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 24086154 | 24088855 | 24086154 | ID=MS.gene027645 |
| chr5.2 | mRNA | 24086154 | 24088855 | 24086154 | ID=MS.gene027645.t1;Parent=MS.gene027645 |
| chr5.2 | exon | 24086154 | 24086301 | 24086154 | ID=MS.gene027645.t1.exon1;Parent=MS.gene027645.t1 |
| chr5.2 | CDS | 24086154 | 24086301 | 24086154 | ID=cds.MS.gene027645.t1;Parent=MS.gene027645.t1 |
| chr5.2 | exon | 24087025 | 24087095 | 24087025 | ID=MS.gene027645.t1.exon2;Parent=MS.gene027645.t1 |
| chr5.2 | CDS | 24087025 | 24087095 | 24087025 | ID=cds.MS.gene027645.t1;Parent=MS.gene027645.t1 |
| chr5.2 | exon | 24087218 | 24087337 | 24087218 | ID=MS.gene027645.t1.exon3;Parent=MS.gene027645.t1 |
| chr5.2 | CDS | 24087218 | 24087337 | 24087218 | ID=cds.MS.gene027645.t1;Parent=MS.gene027645.t1 |
| chr5.2 | exon | 24087918 | 24088036 | 24087918 | ID=MS.gene027645.t1.exon4;Parent=MS.gene027645.t1 |
| chr5.2 | CDS | 24087918 | 24088036 | 24087918 | ID=cds.MS.gene027645.t1;Parent=MS.gene027645.t1 |
| chr5.2 | exon | 24088122 | 24088203 | 24088122 | ID=MS.gene027645.t1.exon5;Parent=MS.gene027645.t1 |
| chr5.2 | CDS | 24088122 | 24088203 | 24088122 | ID=cds.MS.gene027645.t1;Parent=MS.gene027645.t1 |
| chr5.2 | exon | 24088850 | 24088855 | 24088850 | ID=MS.gene027645.t1.exon6;Parent=MS.gene027645.t1 |
| chr5.2 | CDS | 24088850 | 24088855 | 24088850 | ID=cds.MS.gene027645.t1;Parent=MS.gene027645.t1 |
| Gene Sequence |
| Protein sequence |
