Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80261.t1 | RZB99279.1 | 100 | 181 | 0 | 0 | 1 | 181 | 17 | 197 | 3.60E-98 | 367.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80261.t1 | P51823 | 99.4 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 2.6e-100 | 365.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80261.t1 | A0A1U7V2M3 | 100.0 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 2.6e-98 | 367.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80261.t1 | MTR_5g034130 | 100.000 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 2.62e-135 | 375 |
| MS.gene80261.t1 | MTR_5g034125 | 100.000 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 2.62e-135 | 375 |
| MS.gene80261.t1 | MTR_1g086480 | 99.448 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 6.88e-135 | 374 |
| MS.gene80261.t1 | MTR_6g005820 | 99.448 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 9.56e-135 | 374 |
| MS.gene80261.t1 | MTR_7g109960 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 6.38e-134 | 372 |
| MS.gene80261.t1 | MTR_5g016540 | 87.222 | 180 | 23 | 0 | 1 | 180 | 1 | 180 | 1.47e-120 | 338 |
| MS.gene80261.t1 | MTR_4g128910 | 63.277 | 177 | 65 | 0 | 1 | 177 | 1 | 177 | 3.37e-84 | 246 |
| MS.gene80261.t1 | MTR_5g007810 | 61.582 | 177 | 68 | 0 | 1 | 177 | 1 | 177 | 4.35e-83 | 244 |
| MS.gene80261.t1 | MTR_4g077640 | 60.452 | 177 | 70 | 0 | 1 | 177 | 1 | 177 | 2.31e-80 | 237 |
| MS.gene80261.t1 | MTR_5g007820 | 55.495 | 182 | 79 | 1 | 1 | 180 | 1 | 182 | 2.90e-75 | 224 |
| MS.gene80261.t1 | MTR_1g076550 | 51.934 | 181 | 87 | 0 | 1 | 181 | 1 | 181 | 1.18e-67 | 204 |
| MS.gene80261.t1 | MTR_5g007840 | 42.723 | 213 | 77 | 2 | 1 | 180 | 1 | 201 | 8.01e-57 | 177 |
| MS.gene80261.t1 | MTR_8g077540 | 48.485 | 165 | 82 | 3 | 18 | 180 | 17 | 180 | 1.01e-49 | 159 |
| MS.gene80261.t1 | MTR_8g077540 | 48.485 | 165 | 82 | 3 | 18 | 180 | 43 | 206 | 1.51e-49 | 159 |
| MS.gene80261.t1 | MTR_2g022200 | 34.831 | 178 | 105 | 2 | 5 | 173 | 5 | 180 | 4.22e-37 | 127 |
| MS.gene80261.t1 | MTR_5g078090 | 34.091 | 176 | 113 | 2 | 1 | 173 | 1 | 176 | 1.05e-30 | 110 |
| MS.gene80261.t1 | MTR_5g015370 | 32.065 | 184 | 122 | 2 | 1 | 181 | 1 | 184 | 5.42e-30 | 108 |
| MS.gene80261.t1 | MTR_8g077540 | 51.020 | 98 | 46 | 2 | 18 | 114 | 17 | 113 | 1.85e-28 | 103 |
| MS.gene80261.t1 | MTR_4g026950 | 31.847 | 157 | 106 | 1 | 18 | 173 | 1 | 157 | 5.08e-26 | 97.8 |
| MS.gene80261.t1 | MTR_2g034640 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 1.01e-24 | 95.5 |
| MS.gene80261.t1 | MTR_7g112090 | 31.073 | 177 | 106 | 2 | 15 | 177 | 18 | 192 | 2.77e-24 | 94.4 |
| MS.gene80261.t1 | MTR_4g121860 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 7.47e-23 | 90.5 |
| MS.gene80261.t1 | MTR_1g062760 | 34.118 | 85 | 52 | 1 | 18 | 98 | 15 | 99 | 2.54e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80261.t1 | AT5G14670 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 1.28e-133 | 371 |
| MS.gene80261.t1 | AT5G14670 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 1.28e-133 | 371 |
| MS.gene80261.t1 | AT1G10630 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 1.56e-133 | 371 |
| MS.gene80261.t1 | AT1G10630 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 1.56e-133 | 371 |
| MS.gene80261.t1 | AT3G62290 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.34e-133 | 370 |
| MS.gene80261.t1 | AT3G62290 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.34e-133 | 370 |
| MS.gene80261.t1 | AT3G62290 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.34e-133 | 370 |
| MS.gene80261.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene80261.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene80261.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene80261.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene80261.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene80261.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene80261.t1 | AT1G23490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene80261.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene80261.t1 | AT2G47170 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 3.91e-133 | 370 |
| MS.gene80261.t1 | AT2G47170 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 3.91e-133 | 370 |
| MS.gene80261.t1 | AT2G47170 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 3.91e-133 | 370 |
| MS.gene80261.t1 | AT5G14670 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 1.05e-132 | 369 |
| MS.gene80261.t1 | AT2G15310 | 67.403 | 181 | 59 | 0 | 1 | 181 | 1 | 181 | 2.79e-91 | 265 |
| MS.gene80261.t1 | AT2G24765 | 62.147 | 177 | 67 | 0 | 1 | 177 | 1 | 177 | 1.42e-84 | 247 |
| MS.gene80261.t1 | AT5G17060 | 58.659 | 179 | 74 | 0 | 1 | 179 | 1 | 179 | 3.19e-81 | 239 |
| MS.gene80261.t1 | AT5G17060 | 58.659 | 179 | 74 | 0 | 1 | 179 | 1 | 179 | 3.19e-81 | 239 |
| MS.gene80261.t1 | AT3G03120 | 60.452 | 177 | 70 | 0 | 1 | 177 | 1 | 177 | 4.48e-81 | 239 |
| MS.gene80261.t1 | AT3G22950 | 53.039 | 181 | 85 | 0 | 1 | 181 | 1 | 181 | 1.15e-70 | 212 |
| MS.gene80261.t1 | AT3G22950 | 53.039 | 181 | 85 | 0 | 1 | 181 | 1 | 181 | 1.15e-70 | 212 |
| MS.gene80261.t1 | AT2G24765 | 64.844 | 128 | 45 | 0 | 1 | 128 | 1 | 128 | 1.19e-60 | 185 |
| MS.gene80261.t1 | AT3G03120 | 63.077 | 130 | 48 | 0 | 1 | 130 | 1 | 130 | 4.95e-60 | 183 |
| MS.gene80261.t1 | AT1G02430 | 48.936 | 188 | 82 | 5 | 1 | 176 | 1 | 186 | 9.40e-57 | 177 |
| MS.gene80261.t1 | AT1G02440 | 46.237 | 186 | 90 | 4 | 1 | 176 | 1 | 186 | 7.38e-56 | 175 |
| MS.gene80261.t1 | AT2G18390 | 48.485 | 165 | 82 | 3 | 18 | 180 | 17 | 180 | 3.51e-49 | 157 |
| MS.gene80261.t1 | AT1G02430 | 47.205 | 161 | 75 | 4 | 1 | 153 | 1 | 159 | 5.08e-45 | 146 |
| MS.gene80261.t1 | AT5G52210 | 34.091 | 176 | 109 | 1 | 5 | 173 | 5 | 180 | 6.65e-36 | 124 |
| MS.gene80261.t1 | AT5G52210 | 34.091 | 176 | 109 | 1 | 5 | 173 | 5 | 180 | 6.65e-36 | 124 |
| MS.gene80261.t1 | AT3G49870 | 34.091 | 176 | 113 | 2 | 1 | 173 | 1 | 176 | 3.21e-32 | 114 |
| MS.gene80261.t1 | AT5G67560 | 33.742 | 163 | 107 | 1 | 12 | 173 | 14 | 176 | 2.52e-31 | 112 |
| MS.gene80261.t1 | AT5G37680 | 33.742 | 163 | 107 | 1 | 12 | 173 | 14 | 176 | 4.83e-30 | 108 |
| MS.gene80261.t1 | AT3G49870 | 33.121 | 157 | 104 | 1 | 18 | 173 | 1 | 157 | 5.25e-29 | 105 |
| MS.gene80261.t1 | AT3G49860 | 32.530 | 166 | 111 | 1 | 16 | 180 | 10 | 175 | 2.42e-28 | 104 |
| MS.gene80261.t1 | AT1G02440 | 33.766 | 154 | 66 | 3 | 1 | 153 | 1 | 119 | 1.15e-26 | 98.6 |
| MS.gene80261.t1 | AT1G09180 | 32.961 | 179 | 104 | 2 | 13 | 177 | 16 | 192 | 2.74e-25 | 97.1 |
| MS.gene80261.t1 | AT3G62560 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 1.22e-24 | 95.1 |
| MS.gene80261.t1 | AT5G37680 | 32.812 | 128 | 86 | 0 | 46 | 173 | 2 | 129 | 4.55e-24 | 92.0 |
| MS.gene80261.t1 | AT1G56330 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 4.74e-24 | 93.6 |
| MS.gene80261.t1 | AT4G02080 | 31.073 | 177 | 106 | 2 | 15 | 177 | 18 | 192 | 5.17e-24 | 93.6 |
Find 53 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAACAGATTATTACCTTAT+TGG | 0.220363 | 5.4:-24128933 | None:intergenic |
| ACCCAACTTGTCAGTAATTT+CGG | 0.318172 | 5.4:-24128728 | None:intergenic |
| CAGAGCACCTGTGCAACTTC+CGG | 0.333413 | 5.4:+24128866 | MS.gene80261:CDS |
| ATATAAGACCCTGAGTGTTC+TGG | 0.338828 | 5.4:-24128201 | None:intergenic |
| TTCCAACAACATAGCCAATA+AGG | 0.351695 | 5.4:+24128919 | MS.gene80261:CDS |
| TACCTTATTGGCTATGTTGT+TGG | 0.353173 | 5.4:-24128921 | None:intergenic |
| GAACATTAGCTTCACCGTTT+GGG | 0.382427 | 5.4:+24128008 | MS.gene80261:CDS |
| TCGGCAGCATTCATTGCATT+TGG | 0.390949 | 5.4:-24128709 | None:intergenic |
| AGAACATTAGCTTCACCGTT+TGG | 0.392481 | 5.4:+24128007 | MS.gene80261:CDS |
| AGAGCACCTGTGCAACTTCC+GGG | 0.403911 | 5.4:+24128867 | MS.gene80261:CDS |
| CGGAAGTTGCACAGGTGCTC+TGG | 0.408972 | 5.4:-24128865 | None:intergenic |
| AGCTTCACCGTTTGGGATGT+TGG | 0.428276 | 5.4:+24128015 | MS.gene80261:CDS |
| CAGTCGGTTATTCGCGAAGA+AGG | 0.434991 | 5.4:+24126756 | MS.gene80261:CDS |
| ATCCTTTACAAGCTCAAGCT+TGG | 0.444376 | 5.4:+24126826 | MS.gene80261:CDS |
| GGAGGGTCTCTATGAAGGTT+TGG | 0.453032 | 5.4:+24128889 | MS.gene80261:CDS |
| ACCTGTGCAACTTCCGGGGA+GGG | 0.478989 | 5.4:+24128872 | MS.gene80261:CDS |
| ATTTGGAAGATCTTGTTTGT+TGG | 0.480982 | 5.4:-24128692 | None:intergenic |
| CATCCTATGTAACTCATCTC+TGG | 0.482324 | 5.4:-24128263 | None:intergenic |
| TCCGGGGAGGGTCTCTATGA+AGG | 0.482624 | 5.4:+24128884 | MS.gene80261:CDS |
| ACCCTCCCCGGAAGTTGCAC+AGG | 0.491238 | 5.4:-24128873 | None:intergenic |
| TGCCGAAATTACTGACAAGT+TGG | 0.496529 | 5.4:+24128726 | MS.gene80261:CDS |
| GTCTCTATGAAGGTTTGGAC+TGG | 0.504629 | 5.4:+24128894 | MS.gene80261:CDS |
| TTGTCGTGGACAGCAATGAC+AGG | 0.508893 | 5.4:+24128224 | MS.gene80261:CDS |
| CTCCAAGCTTGAGCTTGTAA+AGG | 0.521573 | 5.4:-24126828 | None:intergenic |
| ACTCTCTGAGACAGCGCCAC+TGG | 0.541563 | 5.4:+24128755 | MS.gene80261:CDS |
| ACCTTCATAGAGACCCTCCC+CGG | 0.544592 | 5.4:-24128885 | None:intergenic |
| ATGGTTGGTCTCGATGCGGC+TGG | 0.544748 | 5.4:+24126793 | MS.gene80261:CDS |
| TTCACCGTTTGGGATGTTGG+AGG | 0.546724 | 5.4:+24128018 | MS.gene80261:CDS |
| GCCGAAATTACTGACAAGTT+GGG | 0.549280 | 5.4:+24128727 | MS.gene80261:CDS |
| CATTCACAAAGCTGTTCAGT+CGG | 0.551165 | 5.4:+24126740 | MS.gene80261:CDS |
| GAAGGAAATGCGAATTCTGA+TGG | 0.554686 | 5.4:+24126774 | MS.gene80261:CDS |
| CTTACCAATGGTAGGGATGG+TGG | 0.573307 | 5.4:-24126860 | None:intergenic |
| GTCACCACCATCCCTACCAT+TGG | 0.577538 | 5.4:+24126856 | MS.gene80261:CDS |
| AAGCCAGAGATGAGTTACAT+AGG | 0.581634 | 5.4:+24128260 | MS.gene80261:CDS |
| TTGGCCTCCAACATCCCAAA+CGG | 0.582161 | 5.4:-24128022 | None:intergenic |
| GAAATGCGAATTCTGATGGT+TGG | 0.586975 | 5.4:+24126778 | MS.gene80261:CDS |
| AAGCTTGAGCTTGTAAAGGA+TGG | 0.590971 | 5.4:-24126824 | None:intergenic |
| ACAGAAACTTACCAATGGTA+GGG | 0.591759 | 5.4:-24126867 | None:intergenic |
| TACAGATTCGTCCACTGTGG+AGG | 0.592923 | 5.4:+24128170 | MS.gene80261:intron |
| GCACTACTTCCAGAACACTC+AGG | 0.597040 | 5.4:+24128192 | MS.gene80261:CDS |
| AAACTTACCAATGGTAGGGA+TGG | 0.599979 | 5.4:-24126863 | None:intergenic |
| TCAGGGTCTTATATTTGTCG+TGG | 0.605136 | 5.4:+24128210 | MS.gene80261:CDS |
| CACTACTTCCAGAACACTCA+GGG | 0.606230 | 5.4:+24128193 | MS.gene80261:CDS |
| CTTGAGCTTGTAAAGGATGG+TGG | 0.615400 | 5.4:-24126821 | None:intergenic |
| AGGGTTCAATGTGGAAACTG+TGG | 0.615557 | 5.4:+24127978 | MS.gene80261:intron |
| GAGCACCTGTGCAACTTCCG+GGG | 0.617937 | 5.4:+24128868 | MS.gene80261:CDS |
| GTTACATAGGATGTTGAATG+AGG | 0.618955 | 5.4:+24128273 | MS.gene80261:CDS |
| GGATGTTGGAGGCCAAGACA+AGG | 0.624916 | 5.4:+24128029 | MS.gene80261:CDS |
| CACCTGTGCAACTTCCGGGG+AGG | 0.625313 | 5.4:+24128871 | MS.gene80261:CDS |
| AACAGAAACTTACCAATGGT+AGG | 0.627334 | 5.4:-24126868 | None:intergenic |
| TGTCGTGGACAGCAATGACA+GGG | 0.675280 | 5.4:+24128225 | MS.gene80261:CDS |
| TCTGATGGTTGGTCTCGATG+CGG | 0.691288 | 5.4:+24126789 | MS.gene80261:CDS |
| TGGAAGTAGTGCCTCCACAG+TGG | 0.702478 | 5.4:-24128181 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTCATTAACTTTTAT+TGG | + | chr5.4:24127379-24127398 | MS.gene80261:intron | 10.0% |
| !!! | GTAATTTTTAAATTTAAGAA+TGG | + | chr5.4:24127495-24127514 | MS.gene80261:intron | 10.0% |
| !!! | TTATTTATTGATTTGTTTTA+GGG | + | chr5.4:24127959-24127978 | MS.gene80261:intron | 10.0% |
| !!! | TTTATTTATTGATTTGTTTT+AGG | + | chr5.4:24127958-24127977 | MS.gene80261:intron | 10.0% |
| !!! | TTTATTTTAATTATCTTTTC+AGG | + | chr5.4:24128636-24128655 | MS.gene80261:intron | 10.0% |
| !!! | ACAACATTTTATACTAAATA+GGG | - | chr5.4:24127709-24127728 | None:intergenic | 15.0% |
| !!! | TAACTTTATTTGACTTATTT+TGG | + | chr5.4:24128301-24128320 | MS.gene80261:intron | 15.0% |
| !!! | TATAAATTGAAGTTATTTCT+TGG | - | chr5.4:24127341-24127360 | None:intergenic | 15.0% |
| !! | AAAAAAACTAACCATAAGAA+AGG | + | chr5.4:24127546-24127565 | MS.gene80261:intron | 20.0% |
| !! | AAATCAACATTTGTACAAAA+AGG | - | chr5.4:24128962-24128981 | None:intergenic | 20.0% |
| !! | AATCAACATTTGTACAAAAA+GGG | - | chr5.4:24128961-24128980 | None:intergenic | 20.0% |
| !! | AGACAAAATACTAAATGAAT+GGG | - | chr5.4:24127409-24127428 | None:intergenic | 20.0% |
| !! | AGATAACTTTAATCTATGTT+TGG | - | chr5.4:24127057-24127076 | None:intergenic | 20.0% |
| !! | GAATTTCATTGATAAGATAA+TGG | + | chr5.4:24127449-24127468 | MS.gene80261:intron | 20.0% |
| !! | TAAACAGATTATTACCTTAT+TGG | - | chr5.4:24128936-24128955 | None:intergenic | 20.0% |
| !! | TAGACAAAATACTAAATGAA+TGG | - | chr5.4:24127410-24127429 | None:intergenic | 20.0% |
| !!! | AAAGCTTTACATTTTTCATT+TGG | - | chr5.4:24128999-24129018 | None:intergenic | 20.0% |
| !!! | CTATTTTTCATTAATGTAAG+TGG | + | chr5.4:24127427-24127446 | MS.gene80261:intron | 20.0% |
| !!! | CTTATGGTTAGTTTTTTTAA+AGG | - | chr5.4:24127544-24127563 | None:intergenic | 20.0% |
| !!! | GACAACATTTTATACTAAAT+AGG | - | chr5.4:24127710-24127729 | None:intergenic | 20.0% |
| !!! | TTTTAAAGAATGCAAGAATA+GGG | - | chr5.4:24129078-24129097 | None:intergenic | 20.0% |
| !!! | TTTTTAAAGAATGCAAGAAT+AGG | - | chr5.4:24129079-24129098 | None:intergenic | 20.0% |
| ! | AAAATACTAAATGAATGGGT+GGG | - | chr5.4:24127405-24127424 | None:intergenic | 25.0% |
| ! | AAGTAATATTGTAGTTGTTG+AGG | - | chr5.4:24127832-24127851 | None:intergenic | 25.0% |
| ! | AATATGTGTTTGTTCAGTAT+TGG | + | chr5.4:24126920-24126939 | MS.gene80261:intron | 25.0% |
| ! | ACAATTATCAGAGATATGTT+CGG | - | chr5.4:24128114-24128133 | None:intergenic | 25.0% |
| ! | GTAAATTGCATCTAAACATA+AGG | - | chr5.4:24128072-24128091 | None:intergenic | 25.0% |
| ! | TAAAATGACCAACATACTTT+GGG | - | chr5.4:24127255-24127274 | None:intergenic | 25.0% |
| ! | TACATGTTTGATATCATAGT+GGG | + | chr5.4:24126950-24126969 | MS.gene80261:intron | 25.0% |
| ! | TCTATGTTTGGTATAATAGT+CGG | - | chr5.4:24127045-24127064 | None:intergenic | 25.0% |
| !! | TCTAATTCTTTTTACCTTAC+AGG | + | chr5.4:24129207-24129226 | MS.gene80261:intron | 25.0% |
| !!! | TGTATTTTGTTGTGCATATT+AGG | + | chr5.4:24128435-24128454 | MS.gene80261:intron | 25.0% |
| AAACAAGCATATACGAACTA+AGG | - | chr5.4:24127298-24127317 | None:intergenic | 30.0% | |
| AACAAGCATATACGAACTAA+GGG | - | chr5.4:24127297-24127316 | None:intergenic | 30.0% | |
| AACTAACCATAAGAAAGGAA+TGG | + | chr5.4:24127551-24127570 | MS.gene80261:intron | 30.0% | |
| ATCATCAAAATACTTACCAG+TGG | - | chr5.4:24128774-24128793 | None:intergenic | 30.0% | |
| ATGCTCCTATGACAAATTTA+GGG | + | chr5.4:24128366-24128385 | MS.gene80261:intron | 30.0% | |
| CAAAAATTTACACCTTGTCT+TGG | - | chr5.4:24128044-24128063 | None:intergenic | 30.0% | |
| CAAAATACTAAATGAATGGG+TGG | - | chr5.4:24127406-24127425 | None:intergenic | 30.0% | |
| CAAATATGAATGTGAAGACA+TGG | - | chr5.4:24128336-24128355 | None:intergenic | 30.0% | |
| CTAAAATGACCAACATACTT+TGG | - | chr5.4:24127256-24127275 | None:intergenic | 30.0% | |
| CTACATGTTTGATATCATAG+TGG | + | chr5.4:24126949-24126968 | MS.gene80261:intron | 30.0% | |
| GCCAAGAACTCAATTATATA+TGG | - | chr5.4:24127105-24127124 | None:intergenic | 30.0% | |
| GCCATATATAATTGAGTTCT+TGG | + | chr5.4:24127101-24127120 | MS.gene80261:intron | 30.0% | |
| TAGGTTTGTCAAAGTCAATA+TGG | + | chr5.4:24126999-24127018 | MS.gene80261:intron | 30.0% | |
| TAGTAACAGAAACTTACCAA+TGG | - | chr5.4:24126875-24126894 | None:intergenic | 30.0% | |
| TTTGACAATGCTTTCTATGA+TGG | + | chr5.4:24127851-24127870 | MS.gene80261:intron | 30.0% | |
| ! | ATTTGGAAGATCTTGTTTGT+TGG | - | chr5.4:24128695-24128714 | None:intergenic | 30.0% |
| ! | TGAGATCTAAAATACTCTTC+TGG | + | chr5.4:24128827-24128846 | MS.gene80261:intron | 30.0% |
| !! | TGCTTTCTATGATGGATTAT+TGG | + | chr5.4:24127859-24127878 | MS.gene80261:intron | 30.0% |
| !!! | ATTTGTTTTAGGGTTCAATG+TGG | + | chr5.4:24127969-24127988 | MS.gene80261:intron | 30.0% |
| !!! | CTTTTTCTGGAATGAATTAG+AGG | - | chr5.4:24129145-24129164 | None:intergenic | 30.0% |
| AACAACACAGTATAGACATC+AGG | - | chr5.4:24127603-24127622 | None:intergenic | 35.0% | |
| AACAGAAACTTACCAATGGT+AGG | - | chr5.4:24126871-24126890 | None:intergenic | 35.0% | |
| ACAGAAACTTACCAATGGTA+GGG | - | chr5.4:24126870-24126889 | None:intergenic | 35.0% | |
| ACCCAACTTGTCAGTAATTT+CGG | - | chr5.4:24128731-24128750 | None:intergenic | 35.0% | |
| AGCAAACCACTATTGTTCTA+CGG | + | chr5.4:24127677-24127696 | MS.gene80261:intron | 35.0% | |
| ATAATTGTCTTCGAAGTCAG+TGG | + | chr5.4:24128126-24128145 | MS.gene80261:intron | 35.0% | |
| ATGAATTAGAGGAACTAGCA+AGG | - | chr5.4:24129134-24129153 | None:intergenic | 35.0% | |
| CCAGTTCTTGTAAATTTCCT+AGG | + | chr5.4:24128468-24128487 | MS.gene80261:intron | 35.0% | |
| CCTAGGAAATTTACAAGAAC+TGG | - | chr5.4:24128471-24128490 | None:intergenic | 35.0% | |
| CTCAAGATTCCAATCAATAC+TGG | - | chr5.4:24128811-24128830 | None:intergenic | 35.0% | |
| GAGTTCCCTAAATTTGTCAT+AGG | - | chr5.4:24128374-24128393 | None:intergenic | 35.0% | |
| GATGCTCCTATGACAAATTT+AGG | + | chr5.4:24128365-24128384 | MS.gene80261:intron | 35.0% | |
| GCTATACTGCTATAGTGTAA+TGG | + | chr5.4:24127648-24127667 | MS.gene80261:intron | 35.0% | |
| GTTACATAGGATGTTGAATG+AGG | + | chr5.4:24128273-24128292 | MS.gene80261:CDS | 35.0% | |
| TAACCATAAGAAAGGAATGG+AGG | + | chr5.4:24127554-24127573 | MS.gene80261:intron | 35.0% | |
| TATCAACCGTAGAACAATAG+TGG | - | chr5.4:24127686-24127705 | None:intergenic | 35.0% | |
| TCAAAGATCACTGAGGTAAT+TGG | - | chr5.4:24127127-24127146 | None:intergenic | 35.0% | |
| TTCCAACAACATAGCCAATA+AGG | + | chr5.4:24128919-24128938 | MS.gene80261:CDS | 35.0% | |
| TTCCATTTCAAAGATCACTG+AGG | - | chr5.4:24127134-24127153 | None:intergenic | 35.0% | |
| ! | AAAAGCAAGAGTGTGATCTT+TGG | + | chr5.4:24129160-24129179 | MS.gene80261:intron | 35.0% |
| ! | TACCTCAGTGATCTTTGAAA+TGG | + | chr5.4:24127129-24127148 | MS.gene80261:intron | 35.0% |
| ! | TACCTTATTGGCTATGTTGT+TGG | - | chr5.4:24128924-24128943 | None:intergenic | 35.0% |
| !! | TGTAGTTGTTGAGGAGTATT+TGG | - | chr5.4:24127823-24127842 | None:intergenic | 35.0% |
| !! | TTAGAAGCACTAAACATCCT+AGG | - | chr5.4:24128488-24128507 | None:intergenic | 35.0% |
| AAACTTACCAATGGTAGGGA+TGG | - | chr5.4:24126866-24126885 | None:intergenic | 40.0% | |
| AAGCCAGAGATGAGTTACAT+AGG | + | chr5.4:24128260-24128279 | MS.gene80261:CDS | 40.0% | |
| AAGCTTGAGCTTGTAAAGGA+TGG | - | chr5.4:24126827-24126846 | None:intergenic | 40.0% | |
| ACTATGACACCAAATATGCC+TGG | - | chr5.4:24126980-24126999 | None:intergenic | 40.0% | |
| ATATAAGACCCTGAGTGTTC+TGG | - | chr5.4:24128204-24128223 | None:intergenic | 40.0% | |
| ATCCTTTACAAGCTCAAGCT+TGG | + | chr5.4:24126826-24126845 | MS.gene80261:CDS | 40.0% | |
| ATGTGAAGACATGGCATCAA+AGG | - | chr5.4:24128327-24128346 | None:intergenic | 40.0% | |
| CATCCTATGTAACTCATCTC+TGG | - | chr5.4:24128266-24128285 | None:intergenic | 40.0% | |
| CATTCACAAAGCTGTTCAGT+CGG | + | chr5.4:24126740-24126759 | MS.gene80261:CDS | 40.0% | |
| CTTCCTCCATTCCTTTCTTA+TGG | - | chr5.4:24127560-24127579 | None:intergenic | 40.0% | |
| GAAATGCGAATTCTGATGGT+TGG | + | chr5.4:24126778-24126797 | MS.gene80261:CDS | 40.0% | |
| GAAGGAAATGCGAATTCTGA+TGG | + | chr5.4:24126774-24126793 | MS.gene80261:CDS | 40.0% | |
| GCCGAAATTACTGACAAGTT+GGG | + | chr5.4:24128727-24128746 | MS.gene80261:CDS | 40.0% | |
| TCGTGGATAGCAGAAAATAG+TGG | - | chr5.4:24127787-24127806 | None:intergenic | 40.0% | |
| TGCCGAAATTACTGACAAGT+TGG | + | chr5.4:24128726-24128745 | MS.gene80261:CDS | 40.0% | |
| ! | AGAACATTAGCTTCACCGTT+TGG | + | chr5.4:24128007-24128026 | MS.gene80261:CDS | 40.0% |
| ! | ATACGAACTAAGGGAGTACA+TGG | - | chr5.4:24127288-24127307 | None:intergenic | 40.0% |
| ! | GAACATTAGCTTCACCGTTT+GGG | + | chr5.4:24128008-24128027 | MS.gene80261:CDS | 40.0% |
| ! | TCAGGGTCTTATATTTGTCG+TGG | + | chr5.4:24128210-24128229 | MS.gene80261:CDS | 40.0% |
| ! | TCTGAGATCCCAAAGTATGT+TGG | + | chr5.4:24127244-24127263 | MS.gene80261:intron | 40.0% |
| ! | TTGGAAAGTGTAGTCAATCG+TGG | - | chr5.4:24127804-24127823 | None:intergenic | 40.0% |
| ! | TTTTACAGATTCGTCCACTG+TGG | + | chr5.4:24128167-24128186 | MS.gene80261:intron | 40.0% |
| !! | AATACTCTTCTGGTTCTTCC+AGG | + | chr5.4:24128837-24128856 | MS.gene80261:intron | 40.0% |
| !! | GGCATATTTGGTGTCATAGT+AGG | + | chr5.4:24126980-24126999 | MS.gene80261:intron | 40.0% |
| !! | TGTGATCTTTGGAATCGCTT+AGG | + | chr5.4:24129171-24129190 | MS.gene80261:intron | 40.0% |
| !!! | GATCACACTCTTGCTTTTTC+TGG | - | chr5.4:24129158-24129177 | None:intergenic | 40.0% |
| AATATGGCTCGCTGTGATTC+TGG | + | chr5.4:24127015-24127034 | MS.gene80261:intron | 45.0% | |
| AGGGTTCAATGTGGAAACTG+TGG | + | chr5.4:24127978-24127997 | MS.gene80261:intron | 45.0% | |
| CACTACTTCCAGAACACTCA+GGG | + | chr5.4:24128193-24128212 | MS.gene80261:CDS | 45.0% | |
| CACTGTGCAATGTGTCTTTG+TGG | + | chr5.4:24129046-24129065 | MS.gene80261:intron | 45.0% | |
| CTCCAAGCTTGAGCTTGTAA+AGG | - | chr5.4:24126831-24126850 | None:intergenic | 45.0% | |
| CTTGAGCTTGTAAAGGATGG+TGG | - | chr5.4:24126824-24126843 | None:intergenic | 45.0% | |
| GCTATAGCACTAGTGTGTAG+TGG | + | chr5.4:24127749-24127768 | MS.gene80261:intron | 45.0% | |
| GTCTCTATGAAGGTTTGGAC+TGG | + | chr5.4:24128894-24128913 | MS.gene80261:CDS | 45.0% | |
| TCGGCAGCATTCATTGCATT+TGG | - | chr5.4:24128712-24128731 | None:intergenic | 45.0% | |
| ! | ACTAAGGGAGTACATGGCAT+TGG | - | chr5.4:24127282-24127301 | None:intergenic | 45.0% |
| ! | GATATCATAGTGGGAATGCC+AGG | + | chr5.4:24126959-24126978 | MS.gene80261:intron | 45.0% |
| !! | GCTTCGTGTCCAGTATTGAT+TGG | + | chr5.4:24128799-24128818 | MS.gene80261:intron | 45.0% |
| CAGTCGGTTATTCGCGAAGA+AGG | + | chr5.4:24126756-24126775 | MS.gene80261:CDS | 50.0% | |
| CTTACCAATGGTAGGGATGG+TGG | - | chr5.4:24126863-24126882 | None:intergenic | 50.0% | |
| GCACTACTTCCAGAACACTC+AGG | + | chr5.4:24128192-24128211 | MS.gene80261:CDS | 50.0% | |
| GGAGGGTCTCTATGAAGGTT+TGG | + | chr5.4:24128889-24128908 | MS.gene80261:CDS | 50.0% | |
| GTGGGAATGCCAGGCATATT+TGG | + | chr5.4:24126968-24126987 | MS.gene80261:intron | 50.0% | |
| TACAGATTCGTCCACTGTGG+AGG | + | chr5.4:24128170-24128189 | MS.gene80261:intron | 50.0% | |
| TGTCGTGGACAGCAATGACA+GGG | + | chr5.4:24128225-24128244 | MS.gene80261:CDS | 50.0% | |
| TTGGCCTCCAACATCCCAAA+CGG | - | chr5.4:24128025-24128044 | None:intergenic | 50.0% | |
| TTGTCGTGGACAGCAATGAC+AGG | + | chr5.4:24128224-24128243 | MS.gene80261:CDS | 50.0% | |
| ! | AGCTTCACCGTTTGGGATGT+TGG | + | chr5.4:24128015-24128034 | MS.gene80261:CDS | 50.0% |
| ! | TTCACCGTTTGGGATGTTGG+AGG | + | chr5.4:24128018-24128037 | MS.gene80261:CDS | 50.0% |
| !! | TCTGATGGTTGGTCTCGATG+CGG | + | chr5.4:24126789-24126808 | MS.gene80261:CDS | 50.0% |
| ACCTTCATAGAGACCCTCCC+CGG | - | chr5.4:24128888-24128907 | None:intergenic | 55.0% | |
| GGATGTTGGAGGCCAAGACA+AGG | + | chr5.4:24128029-24128048 | MS.gene80261:CDS | 55.0% | |
| GTCACCACCATCCCTACCAT+TGG | + | chr5.4:24126856-24126875 | MS.gene80261:CDS | 55.0% | |
| TGGAAGTAGTGCCTCCACAG+TGG | - | chr5.4:24128184-24128203 | None:intergenic | 55.0% | |
| ! | ACAGGTGCTCTGGATGTACC+TGG | - | chr5.4:24128858-24128877 | None:intergenic | 55.0% |
| ! | AGAGCACCTGTGCAACTTCC+GGG | + | chr5.4:24128867-24128886 | MS.gene80261:CDS | 55.0% |
| ! | CAGAGCACCTGTGCAACTTC+CGG | + | chr5.4:24128866-24128885 | MS.gene80261:CDS | 55.0% |
| ACCTGTGCAACTTCCGGGGA+GGG | + | chr5.4:24128872-24128891 | MS.gene80261:CDS | 60.0% | |
| CGGAAGTTGCACAGGTGCTC+TGG | - | chr5.4:24128868-24128887 | None:intergenic | 60.0% | |
| GAGCACCTGTGCAACTTCCG+GGG | + | chr5.4:24128868-24128887 | MS.gene80261:CDS | 60.0% | |
| TCCGGGGAGGGTCTCTATGA+AGG | + | chr5.4:24128884-24128903 | MS.gene80261:CDS | 60.0% | |
| !! | ACTCTCTGAGACAGCGCCAC+TGG | + | chr5.4:24128755-24128774 | MS.gene80261:CDS | 60.0% |
| !! | ATGGTTGGTCTCGATGCGGC+TGG | + | chr5.4:24126793-24126812 | MS.gene80261:CDS | 60.0% |
| ACCCTCCCCGGAAGTTGCAC+AGG | - | chr5.4:24128876-24128895 | None:intergenic | 65.0% | |
| CACCTGTGCAACTTCCGGGG+AGG | + | chr5.4:24128871-24128890 | MS.gene80261:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 24126730 | 24129234 | 24126730 | ID=MS.gene80261 |
| chr5.4 | mRNA | 24126730 | 24129234 | 24126730 | ID=MS.gene80261.t1;Parent=MS.gene80261 |
| chr5.4 | exon | 24126730 | 24126877 | 24126730 | ID=MS.gene80261.t1.exon1;Parent=MS.gene80261.t1 |
| chr5.4 | CDS | 24126730 | 24126877 | 24126730 | ID=cds.MS.gene80261.t1;Parent=MS.gene80261.t1 |
| chr5.4 | exon | 24127980 | 24128050 | 24127980 | ID=MS.gene80261.t1.exon2;Parent=MS.gene80261.t1 |
| chr5.4 | CDS | 24127980 | 24128050 | 24127980 | ID=cds.MS.gene80261.t1;Parent=MS.gene80261.t1 |
| chr5.4 | exon | 24128175 | 24128294 | 24128175 | ID=MS.gene80261.t1.exon3;Parent=MS.gene80261.t1 |
| chr5.4 | CDS | 24128175 | 24128294 | 24128175 | ID=cds.MS.gene80261.t1;Parent=MS.gene80261.t1 |
| chr5.4 | exon | 24128658 | 24128776 | 24128658 | ID=MS.gene80261.t1.exon4;Parent=MS.gene80261.t1 |
| chr5.4 | CDS | 24128658 | 24128776 | 24128658 | ID=cds.MS.gene80261.t1;Parent=MS.gene80261.t1 |
| chr5.4 | exon | 24128859 | 24128940 | 24128859 | ID=MS.gene80261.t1.exon5;Parent=MS.gene80261.t1 |
| chr5.4 | CDS | 24128859 | 24128940 | 24128859 | ID=cds.MS.gene80261.t1;Parent=MS.gene80261.t1 |
| chr5.4 | exon | 24129229 | 24129234 | 24129229 | ID=MS.gene80261.t1.exon6;Parent=MS.gene80261.t1 |
| chr5.4 | CDS | 24129229 | 24129234 | 24129229 | ID=cds.MS.gene80261.t1;Parent=MS.gene80261.t1 |
| Gene Sequence |
| Protein sequence |
