Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44370.t1 | RZB99279.1 | 100 | 181 | 0 | 0 | 1 | 181 | 17 | 197 | 3.60E-98 | 367.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44370.t1 | P51823 | 99.4 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 2.6e-100 | 365.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44370.t1 | A0A1U7V2M3 | 100.0 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 2.6e-98 | 367.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44370.t1 | MTR_5g034130 | 100.000 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 2.62e-135 | 375 |
| MS.gene44370.t1 | MTR_5g034125 | 100.000 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 2.62e-135 | 375 |
| MS.gene44370.t1 | MTR_1g086480 | 99.448 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 6.88e-135 | 374 |
| MS.gene44370.t1 | MTR_6g005820 | 99.448 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 9.56e-135 | 374 |
| MS.gene44370.t1 | MTR_7g109960 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 6.38e-134 | 372 |
| MS.gene44370.t1 | MTR_5g016540 | 87.222 | 180 | 23 | 0 | 1 | 180 | 1 | 180 | 1.47e-120 | 338 |
| MS.gene44370.t1 | MTR_4g128910 | 63.277 | 177 | 65 | 0 | 1 | 177 | 1 | 177 | 3.37e-84 | 246 |
| MS.gene44370.t1 | MTR_5g007810 | 61.582 | 177 | 68 | 0 | 1 | 177 | 1 | 177 | 4.35e-83 | 244 |
| MS.gene44370.t1 | MTR_4g077640 | 60.452 | 177 | 70 | 0 | 1 | 177 | 1 | 177 | 2.31e-80 | 237 |
| MS.gene44370.t1 | MTR_5g007820 | 55.495 | 182 | 79 | 1 | 1 | 180 | 1 | 182 | 2.90e-75 | 224 |
| MS.gene44370.t1 | MTR_1g076550 | 51.934 | 181 | 87 | 0 | 1 | 181 | 1 | 181 | 1.18e-67 | 204 |
| MS.gene44370.t1 | MTR_5g007840 | 42.723 | 213 | 77 | 2 | 1 | 180 | 1 | 201 | 8.01e-57 | 177 |
| MS.gene44370.t1 | MTR_8g077540 | 48.485 | 165 | 82 | 3 | 18 | 180 | 17 | 180 | 1.01e-49 | 159 |
| MS.gene44370.t1 | MTR_8g077540 | 48.485 | 165 | 82 | 3 | 18 | 180 | 43 | 206 | 1.51e-49 | 159 |
| MS.gene44370.t1 | MTR_2g022200 | 34.831 | 178 | 105 | 2 | 5 | 173 | 5 | 180 | 4.22e-37 | 127 |
| MS.gene44370.t1 | MTR_5g078090 | 34.091 | 176 | 113 | 2 | 1 | 173 | 1 | 176 | 1.05e-30 | 110 |
| MS.gene44370.t1 | MTR_5g015370 | 32.065 | 184 | 122 | 2 | 1 | 181 | 1 | 184 | 5.42e-30 | 108 |
| MS.gene44370.t1 | MTR_8g077540 | 51.020 | 98 | 46 | 2 | 18 | 114 | 17 | 113 | 1.85e-28 | 103 |
| MS.gene44370.t1 | MTR_4g026950 | 31.847 | 157 | 106 | 1 | 18 | 173 | 1 | 157 | 5.08e-26 | 97.8 |
| MS.gene44370.t1 | MTR_2g034640 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 1.01e-24 | 95.5 |
| MS.gene44370.t1 | MTR_7g112090 | 31.073 | 177 | 106 | 2 | 15 | 177 | 18 | 192 | 2.77e-24 | 94.4 |
| MS.gene44370.t1 | MTR_4g121860 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 7.47e-23 | 90.5 |
| MS.gene44370.t1 | MTR_1g062760 | 34.118 | 85 | 52 | 1 | 18 | 98 | 15 | 99 | 2.54e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44370.t1 | AT5G14670 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 1.28e-133 | 371 |
| MS.gene44370.t1 | AT5G14670 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 1.28e-133 | 371 |
| MS.gene44370.t1 | AT1G10630 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 1.56e-133 | 371 |
| MS.gene44370.t1 | AT1G10630 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 1.56e-133 | 371 |
| MS.gene44370.t1 | AT3G62290 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.34e-133 | 370 |
| MS.gene44370.t1 | AT3G62290 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.34e-133 | 370 |
| MS.gene44370.t1 | AT3G62290 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.34e-133 | 370 |
| MS.gene44370.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene44370.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene44370.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene44370.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene44370.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene44370.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene44370.t1 | AT1G23490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene44370.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.78e-133 | 370 |
| MS.gene44370.t1 | AT2G47170 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 3.91e-133 | 370 |
| MS.gene44370.t1 | AT2G47170 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 3.91e-133 | 370 |
| MS.gene44370.t1 | AT2G47170 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 3.91e-133 | 370 |
| MS.gene44370.t1 | AT5G14670 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 1.05e-132 | 369 |
| MS.gene44370.t1 | AT2G15310 | 67.403 | 181 | 59 | 0 | 1 | 181 | 1 | 181 | 2.79e-91 | 265 |
| MS.gene44370.t1 | AT2G24765 | 62.147 | 177 | 67 | 0 | 1 | 177 | 1 | 177 | 1.42e-84 | 247 |
| MS.gene44370.t1 | AT5G17060 | 58.659 | 179 | 74 | 0 | 1 | 179 | 1 | 179 | 3.19e-81 | 239 |
| MS.gene44370.t1 | AT5G17060 | 58.659 | 179 | 74 | 0 | 1 | 179 | 1 | 179 | 3.19e-81 | 239 |
| MS.gene44370.t1 | AT3G03120 | 60.452 | 177 | 70 | 0 | 1 | 177 | 1 | 177 | 4.48e-81 | 239 |
| MS.gene44370.t1 | AT3G22950 | 53.039 | 181 | 85 | 0 | 1 | 181 | 1 | 181 | 1.15e-70 | 212 |
| MS.gene44370.t1 | AT3G22950 | 53.039 | 181 | 85 | 0 | 1 | 181 | 1 | 181 | 1.15e-70 | 212 |
| MS.gene44370.t1 | AT2G24765 | 64.844 | 128 | 45 | 0 | 1 | 128 | 1 | 128 | 1.19e-60 | 185 |
| MS.gene44370.t1 | AT3G03120 | 63.077 | 130 | 48 | 0 | 1 | 130 | 1 | 130 | 4.95e-60 | 183 |
| MS.gene44370.t1 | AT1G02430 | 48.936 | 188 | 82 | 5 | 1 | 176 | 1 | 186 | 9.40e-57 | 177 |
| MS.gene44370.t1 | AT1G02440 | 46.237 | 186 | 90 | 4 | 1 | 176 | 1 | 186 | 7.38e-56 | 175 |
| MS.gene44370.t1 | AT2G18390 | 48.485 | 165 | 82 | 3 | 18 | 180 | 17 | 180 | 3.51e-49 | 157 |
| MS.gene44370.t1 | AT1G02430 | 47.205 | 161 | 75 | 4 | 1 | 153 | 1 | 159 | 5.08e-45 | 146 |
| MS.gene44370.t1 | AT5G52210 | 34.091 | 176 | 109 | 1 | 5 | 173 | 5 | 180 | 6.65e-36 | 124 |
| MS.gene44370.t1 | AT5G52210 | 34.091 | 176 | 109 | 1 | 5 | 173 | 5 | 180 | 6.65e-36 | 124 |
| MS.gene44370.t1 | AT3G49870 | 34.091 | 176 | 113 | 2 | 1 | 173 | 1 | 176 | 3.21e-32 | 114 |
| MS.gene44370.t1 | AT5G67560 | 33.742 | 163 | 107 | 1 | 12 | 173 | 14 | 176 | 2.52e-31 | 112 |
| MS.gene44370.t1 | AT5G37680 | 33.742 | 163 | 107 | 1 | 12 | 173 | 14 | 176 | 4.83e-30 | 108 |
| MS.gene44370.t1 | AT3G49870 | 33.121 | 157 | 104 | 1 | 18 | 173 | 1 | 157 | 5.25e-29 | 105 |
| MS.gene44370.t1 | AT3G49860 | 32.530 | 166 | 111 | 1 | 16 | 180 | 10 | 175 | 2.42e-28 | 104 |
| MS.gene44370.t1 | AT1G02440 | 33.766 | 154 | 66 | 3 | 1 | 153 | 1 | 119 | 1.15e-26 | 98.6 |
| MS.gene44370.t1 | AT1G09180 | 32.961 | 179 | 104 | 2 | 13 | 177 | 16 | 192 | 2.74e-25 | 97.1 |
| MS.gene44370.t1 | AT3G62560 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 1.22e-24 | 95.1 |
| MS.gene44370.t1 | AT5G37680 | 32.812 | 128 | 86 | 0 | 46 | 173 | 2 | 129 | 4.55e-24 | 92.0 |
| MS.gene44370.t1 | AT1G56330 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 4.74e-24 | 93.6 |
| MS.gene44370.t1 | AT4G02080 | 31.073 | 177 | 106 | 2 | 15 | 177 | 18 | 192 | 5.17e-24 | 93.6 |
Find 52 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCAACAACATTGCCAATA+AGG | 0.283068 | 5.1:+25054239 | MS.gene44370:CDS |
| GAAACCAATAGCTACCTTAT+TGG | 0.327478 | 5.1:-25054253 | None:intergenic |
| ATATAAGACCCTGAGTGTTC+TGG | 0.338828 | 5.1:-25053301 | None:intergenic |
| AGAACATTAGCTTCACTGTT+TGG | 0.346877 | 5.1:+25053109 | MS.gene44370:CDS |
| GAACATTAGCTTCACTGTTT+GGG | 0.346980 | 5.1:+25053110 | MS.gene44370:CDS |
| CAGTCGGTTATTTGCGAAGA+AGG | 0.396684 | 5.1:+25052228 | MS.gene44370:CDS |
| CTCAGCTGCATTCATTGCAT+TGG | 0.411804 | 5.1:-25054027 | None:intergenic |
| CAGAGCACTTGTGCCACCTC+TGG | 0.413296 | 5.1:+25054186 | MS.gene44370:CDS |
| TACCTTATTGGCAATGTTGT+TGG | 0.415485 | 5.1:-25054241 | None:intergenic |
| AGCTTCACTGTTTGGGATGT+CGG | 0.421764 | 5.1:+25053117 | MS.gene44370:CDS |
| CCAAGAAACTTACCGATAGT+AGG | 0.449062 | 5.1:-25052340 | None:intergenic |
| TCAGCTGCATTCATTGCATT+GGG | 0.455488 | 5.1:-25054026 | None:intergenic |
| TTGAATAAAATACCTTGTCC+TGG | 0.462109 | 5.1:-25053143 | None:intergenic |
| GGAGGGTCTTTATGAAGGTC+TGG | 0.465424 | 5.1:+25054209 | MS.gene44370:CDS |
| AGCTGAGATTACTGACAAGC+TGG | 0.467998 | 5.1:+25054043 | MS.gene44370:CDS |
| CACTTGTGCCACCTCTGGGG+AGG | 0.474754 | 5.1:+25054191 | MS.gene44370:CDS |
| ACTTGTGCCACCTCTGGGGA+GGG | 0.483489 | 5.1:+25054192 | MS.gene44370:CDS |
| CATCCTATGTAGCTCATCTC+TGG | 0.489228 | 5.1:-25053363 | None:intergenic |
| TGTTTGGGATGTCGGAGGCC+AGG | 0.494393 | 5.1:+25053125 | MS.gene44370:CDS |
| TTGTCGTTGACAGCAATGAC+AGG | 0.500098 | 5.1:+25053324 | MS.gene44370:CDS |
| ATTCTCTACAAGCTCAAGCT+TGG | 0.503263 | 5.1:+25052298 | MS.gene44370:CDS |
| GTCTTTATGAAGGTCTGGAC+TGG | 0.504629 | 5.1:+25054214 | MS.gene44370:CDS |
| ATTGGGAAGATCTTGTTTGT+TGG | 0.504874 | 5.1:-25054009 | None:intergenic |
| TTCTCCAGATCCGTCCCTTG+TGG | 0.505460 | 5.1:+25053267 | MS.gene44370:intron |
| AGAGCACTTGTGCCACCTCT+GGG | 0.506189 | 5.1:+25054187 | MS.gene44370:CDS |
| AAGCTTGAGCTTGTAGAGAA+TGG | 0.532263 | 5.1:-25052296 | None:intergenic |
| TCTGGGGAGGGTCTTTATGA+AGG | 0.537610 | 5.1:+25054204 | MS.gene44370:CDS |
| ACTCTCTCAGACAGCGCCAC+TGG | 0.541563 | 5.1:+25054072 | MS.gene44370:CDS |
| CAAGAAACTTACCGATAGTA+GGG | 0.545597 | 5.1:-25052339 | None:intergenic |
| AGGCCAGAGATGAGCTACAT+AGG | 0.552666 | 5.1:+25053360 | MS.gene44370:CDS |
| ATGGTTGGTCTCGATGCAGC+TGG | 0.565190 | 5.1:+25052265 | MS.gene44370:CDS |
| CATTCACGAAGCTGTTCAGT+CGG | 0.566942 | 5.1:+25052212 | MS.gene44370:CDS |
| TCCAGATCCGTCCCTTGTGG+AGG | 0.578144 | 5.1:+25053270 | MS.gene44370:intron |
| CTGGAAGTAGTGCCTCCACA+AGG | 0.582344 | 5.1:-25053282 | None:intergenic |
| AGTAGTGCCTCCACAAGGGA+CGG | 0.589421 | 5.1:-25053277 | None:intergenic |
| GTCACCACCATCCCTACTAT+CGG | 0.594267 | 5.1:+25052328 | MS.gene44370:CDS |
| GCACTACTTCCAGAACACTC+AGG | 0.597040 | 5.1:+25053292 | MS.gene44370:CDS |
| TGACAGGGATAGAGTTGTTG+AGG | 0.602509 | 5.1:+25053340 | MS.gene44370:CDS |
| CACTACTTCCAGAACACTCA+GGG | 0.606230 | 5.1:+25053293 | MS.gene44370:CDS |
| GGATGTCGGAGGCCAGGACA+AGG | 0.616890 | 5.1:+25053131 | MS.gene44370:CDS |
| AAACTTACCGATAGTAGGGA+TGG | 0.618750 | 5.1:-25052335 | None:intergenic |
| TTCACTGTTTGGGATGTCGG+AGG | 0.622949 | 5.1:+25053120 | MS.gene44370:CDS |
| TGTCGTTGACAGCAATGACA+GGG | 0.631238 | 5.1:+25053325 | MS.gene44370:CDS |
| AGGGTTCAATGTGGAGACTG+TGG | 0.633133 | 5.1:+25053080 | MS.gene44370:intron |
| GCTACATAGGATGTTGAATG+AGG | 0.633182 | 5.1:+25053373 | MS.gene44370:CDS |
| ATAAAGACCCTCCCCAGAGG+TGG | 0.635325 | 5.1:-25054199 | None:intergenic |
| CTTGAGCTTGTAGAGAATGG+TGG | 0.640954 | 5.1:-25052293 | None:intergenic |
| GCTGAGATTACTGACAAGCT+GGG | 0.649547 | 5.1:+25054044 | MS.gene44370:CDS |
| CTTACCGATAGTAGGGATGG+TGG | 0.656172 | 5.1:-25052332 | None:intergenic |
| GAGCACTTGTGCCACCTCTG+GGG | 0.692264 | 5.1:+25054188 | MS.gene44370:CDS |
| TTCATAAAGACCCTCCCCAG+AGG | 0.695022 | 5.1:-25054202 | None:intergenic |
| TGGAAGTAGTGCCTCCACAA+GGG | 0.700224 | 5.1:-25053281 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTATATTTTAATTTA+GGG | + | chr5.1:25053061-25053080 | MS.gene44370:intron | 0.0% |
| !!! | TTTATTTTATATTTTAATTT+AGG | + | chr5.1:25053060-25053079 | MS.gene44370:intron | 0.0% |
| !! | CTTCAAAAAAAAATAAAAAA+AGG | - | chr5.1:25054516-25054535 | None:intergenic | 10.0% |
| !!! | AATTGGAAATATATTAATTT+TGG | - | chr5.1:25054455-25054474 | None:intergenic | 10.0% |
| !!! | TTTTTTTTCAAATAATTATC+GGG | - | chr5.1:25052461-25052480 | None:intergenic | 10.0% |
| !! | AAATTGTATAAATGTGTATA+TGG | + | chr5.1:25054427-25054446 | MS.gene44370:intron | 15.0% |
| !! | AATTGTATAAATGTGTATAT+GGG | + | chr5.1:25054428-25054447 | MS.gene44370:intron | 15.0% |
| !! | GATTTCATTGTTAAATATAA+AGG | - | chr5.1:25052699-25052718 | None:intergenic | 15.0% |
| !! | GTGTTAAAAAATAAAAATAG+AGG | - | chr5.1:25054285-25054304 | None:intergenic | 15.0% |
| !! | TAAAAAATAAAAATAGAGGA+GGG | - | chr5.1:25054281-25054300 | None:intergenic | 15.0% |
| !! | TTAAAAAATAAAAATAGAGG+AGG | - | chr5.1:25054282-25054301 | None:intergenic | 15.0% |
| !!! | AGACTAATTTATTTACTTTT+TGG | + | chr5.1:25054389-25054408 | MS.gene44370:intron | 15.0% |
| !!! | ATGTTTAATTTAAACTTGAT+GGG | + | chr5.1:25052925-25052944 | MS.gene44370:intron | 15.0% |
| !! | AATCAAAATTCATTTCAAAC+AGG | - | chr5.1:25052413-25052432 | None:intergenic | 20.0% |
| !! | ACAATATATGACATAAAGTT+TGG | - | chr5.1:25052722-25052741 | None:intergenic | 20.0% |
| !! | ATTATCAAATTATTTACCAG+TGG | - | chr5.1:25054091-25054110 | None:intergenic | 20.0% |
| !! | ATTTATTGAGCATTTCAAAT+AGG | - | chr5.1:25054551-25054570 | None:intergenic | 20.0% |
| !! | CAATATATGACATAAAGTTT+GGG | - | chr5.1:25052721-25052740 | None:intergenic | 20.0% |
| !! | CATCAAGTTTAAATTAAACA+TGG | - | chr5.1:25052926-25052945 | None:intergenic | 20.0% |
| !! | TAAACAATCATTGAGTTATA+TGG | - | chr5.1:25052623-25052642 | None:intergenic | 20.0% |
| !! | TACAAGAACTAGAAATATTA+TGG | + | chr5.1:25054476-25054495 | MS.gene44370:intron | 20.0% |
| !! | TACTTATGCAATACTTATTA+GGG | + | chr5.1:25054674-25054693 | MS.gene44370:intron | 20.0% |
| !!! | ATTTCTAGTTCTTGTAAAAT+TGG | - | chr5.1:25054472-25054491 | None:intergenic | 20.0% |
| !!! | CATGTTTAATTTAAACTTGA+TGG | + | chr5.1:25052924-25052943 | MS.gene44370:intron | 20.0% |
| !!! | TAATAAGTATTGCATAAGTA+GGG | - | chr5.1:25054674-25054693 | None:intergenic | 20.0% |
| !!! | TAATTAATCCATGTTTTTAC+TGG | + | chr5.1:25053715-25053734 | MS.gene44370:intron | 20.0% |
| !!! | TACTTTTCTTATATTCAGTT+TGG | + | chr5.1:25053396-25053415 | MS.gene44370:intron | 20.0% |
| ! | AATATGATCCAGTAAAAACA+TGG | - | chr5.1:25053726-25053745 | None:intergenic | 25.0% |
| ! | AATTTGTAGTTTGATAGACA+TGG | + | chr5.1:25054586-25054605 | MS.gene44370:intron | 25.0% |
| ! | ACTTATGCAATACTTATTAG+GGG | + | chr5.1:25054675-25054694 | MS.gene44370:intron | 25.0% |
| ! | ATAATGCTACATGTAGTATT+TGG | + | chr5.1:25054106-25054125 | MS.gene44370:intron | 25.0% |
| ! | ATGGATGAAATTACATGTTA+AGG | - | chr5.1:25052907-25052926 | None:intergenic | 25.0% |
| ! | CTACTTATGCAATACTTATT+AGG | + | chr5.1:25054673-25054692 | MS.gene44370:intron | 25.0% |
| ! | GTTAAGTTCATTCATGTTTA+TGG | + | chr5.1:25052872-25052891 | MS.gene44370:intron | 25.0% |
| ! | TCAACTATAATGACTTTGTT+TGG | + | chr5.1:25052783-25052802 | MS.gene44370:intron | 25.0% |
| ! | TGGATGAAATTACATGTTAA+GGG | - | chr5.1:25052906-25052925 | None:intergenic | 25.0% |
| !! | CTAATAAGTATTGCATAAGT+AGG | - | chr5.1:25054675-25054694 | None:intergenic | 25.0% |
| !! | CTGTGTATTAATCTATCTTT+TGG | + | chr5.1:25053758-25053777 | MS.gene44370:intron | 25.0% |
| !! | GATAAAATCAACATTTTCCT+GGG | - | chr5.1:25054322-25054341 | None:intergenic | 25.0% |
| !! | TAATTTTACAAATGCCTACA+AGG | - | chr5.1:25052570-25052589 | None:intergenic | 25.0% |
| !! | TCTCATTTGAAATATGCATT+TGG | + | chr5.1:25052830-25052849 | MS.gene44370:intron | 25.0% |
| !! | TTACTTAGTAGTCTTTTTGT+GGG | + | chr5.1:25054703-25054722 | MS.gene44370:intron | 25.0% |
| !! | TTTACTTAGTAGTCTTTTTG+TGG | + | chr5.1:25054702-25054721 | MS.gene44370:intron | 25.0% |
| !!! | TTTTAATTTAGGGTTCAATG+TGG | + | chr5.1:25053071-25053090 | MS.gene44370:intron | 25.0% |
| AAAATAAAAATAGAGGAGGG+AGG | - | chr5.1:25054278-25054297 | None:intergenic | 30.0% | |
| ATCAGAAGCAGTAAATTCAT+AGG | - | chr5.1:25053817-25053836 | None:intergenic | 30.0% | |
| ATTAACAGCAACAATGATGA+AGG | - | chr5.1:25053699-25053718 | None:intergenic | 30.0% | |
| GAGTTGAGATAGAAAGATAT+AGG | + | chr5.1:25053525-25053544 | MS.gene44370:intron | 30.0% | |
| TAAAACACGAGAAAGAATTG+AGG | + | chr5.1:25054852-25054871 | MS.gene44370:intron | 30.0% | |
| TAACATTGAATGTGATCAAG+TGG | + | chr5.1:25052641-25052660 | MS.gene44370:intron | 30.0% | |
| TATGAGTGAAAACGTCTAAA+TGG | - | chr5.1:25053461-25053480 | None:intergenic | 30.0% | |
| TCAGAAGCAGTAAATTCATA+GGG | - | chr5.1:25053816-25053835 | None:intergenic | 30.0% | |
| TTAACAGCAACAATGATGAA+GGG | - | chr5.1:25053698-25053717 | None:intergenic | 30.0% | |
| TTCTAGATCATAATGTTCAC+TGG | + | chr5.1:25053616-25053635 | MS.gene44370:intron | 30.0% | |
| TTGAATAAAATACCTTGTCC+TGG | - | chr5.1:25053146-25053165 | None:intergenic | 30.0% | |
| TTTATAGCCAAGAACTAAGA+AGG | - | chr5.1:25054836-25054855 | None:intergenic | 30.0% | |
| ! | GGATAAAATCAACATTTTCC+TGG | - | chr5.1:25054323-25054342 | None:intergenic | 30.0% |
| ! | TACTTAGTAGTCTTTTTGTG+GGG | + | chr5.1:25054704-25054723 | MS.gene44370:intron | 30.0% |
| ! | TCTTTTGGTACTTGAATGAT+CGG | + | chr5.1:25053773-25053792 | MS.gene44370:intron | 30.0% |
| ! | TGCAATAATTGAGTGCTTTT+AGG | + | chr5.1:25054347-25054366 | MS.gene44370:intron | 30.0% |
| ! | TTGCAAGTTTTGCTTATGTA+TGG | + | chr5.1:25052432-25052451 | MS.gene44370:intron | 30.0% |
| AATATGTTTAGGTGCTCAGA+AGG | - | chr5.1:25054739-25054758 | None:intergenic | 35.0% | |
| AATGAAGACGAAATAGAAGC+AGG | - | chr5.1:25054765-25054784 | None:intergenic | 35.0% | |
| AGCACTCAATTATTGCATCT+TGG | - | chr5.1:25054344-25054363 | None:intergenic | 35.0% | |
| ATATGTTTAGGTGCTCAGAA+GGG | - | chr5.1:25054738-25054757 | None:intergenic | 35.0% | |
| ATGCAATACTTATTAGGGGT+TGG | + | chr5.1:25054679-25054698 | MS.gene44370:intron | 35.0% | |
| ATTGCCAATAAGGTAGCTAT+TGG | + | chr5.1:25054249-25054268 | MS.gene44370:intron | 35.0% | |
| CAAGAAACTTACCGATAGTA+GGG | - | chr5.1:25052342-25052361 | None:intergenic | 35.0% | |
| CTCAACTCTCAACAAATTTG+TGG | - | chr5.1:25053513-25053532 | None:intergenic | 35.0% | |
| GAAACCAATAGCTACCTTAT+TGG | - | chr5.1:25054256-25054275 | None:intergenic | 35.0% | |
| GAACAAAAAAGAGAAGAGCA+TGG | - | chr5.1:25053908-25053927 | None:intergenic | 35.0% | |
| GAAGCAGGTAGAATATGTTT+AGG | - | chr5.1:25054750-25054769 | None:intergenic | 35.0% | |
| GCAATCACATTGTTGTGTAT+TGG | + | chr5.1:25052496-25052515 | MS.gene44370:intron | 35.0% | |
| TACCTTATTGGCAATGTTGT+TGG | - | chr5.1:25054244-25054263 | None:intergenic | 35.0% | |
| TACTACAGTGAAAGACAGAA+AGG | - | chr5.1:25053224-25053243 | None:intergenic | 35.0% | |
| TGCTTGTACAACTCTGATTT+GGG | + | chr5.1:25053574-25053593 | MS.gene44370:intron | 35.0% | |
| TTCCAACAACATTGCCAATA+AGG | + | chr5.1:25054239-25054258 | MS.gene44370:CDS | 35.0% | |
| TTGCTTGTACAACTCTGATT+TGG | + | chr5.1:25053573-25053592 | MS.gene44370:intron | 35.0% | |
| ! | ACTTAGTAGTCTTTTTGTGG+GGG | + | chr5.1:25054705-25054724 | MS.gene44370:intron | 35.0% |
| ! | AGAACATTAGCTTCACTGTT+TGG | + | chr5.1:25053109-25053128 | MS.gene44370:CDS | 35.0% |
| ! | ATTGGGAAGATCTTGTTTGT+TGG | - | chr5.1:25054012-25054031 | None:intergenic | 35.0% |
| ! | CACTATAGGTTTTTCCTTGT+AGG | + | chr5.1:25052553-25052572 | MS.gene44370:intron | 35.0% |
| ! | CACTTAAATGATTTTGTCCC+AGG | + | chr5.1:25054302-25054321 | MS.gene44370:intron | 35.0% |
| ! | GAACATTAGCTTCACTGTTT+GGG | + | chr5.1:25053110-25053129 | MS.gene44370:CDS | 35.0% |
| ! | GAAGGAAATGCGAATTTTGA+TGG | + | chr5.1:25052246-25052265 | MS.gene44370:CDS | 35.0% |
| !! | GAAATGCGAATTTTGATGGT+TGG | + | chr5.1:25052250-25052269 | MS.gene44370:CDS | 35.0% |
| AAACTTACCGATAGTAGGGA+TGG | - | chr5.1:25052338-25052357 | None:intergenic | 40.0% | |
| AAGCTTGAGCTTGTAGAGAA+TGG | - | chr5.1:25052299-25052318 | None:intergenic | 40.0% | |
| AATTTCTGTCGTGCTTCTCA+TGG | + | chr5.1:25053663-25053682 | MS.gene44370:intron | 40.0% | |
| ACAGTGAAAGACAGAAAGGA+GGG | - | chr5.1:25053220-25053239 | None:intergenic | 40.0% | |
| ATATAAGACCCTGAGTGTTC+TGG | - | chr5.1:25053304-25053323 | None:intergenic | 40.0% | |
| ATTCTCTACAAGCTCAAGCT+TGG | + | chr5.1:25052298-25052317 | MS.gene44370:CDS | 40.0% | |
| ATTGGACACACGTTTCTGAA+TGG | + | chr5.1:25052514-25052533 | MS.gene44370:intron | 40.0% | |
| ATTTCTGTCGTGCTTCTCAT+GGG | + | chr5.1:25053664-25053683 | MS.gene44370:intron | 40.0% | |
| CATCTAGATGCCTAGAGTAT+GGG | - | chr5.1:25054631-25054650 | None:intergenic | 40.0% | |
| CCAAGAAACTTACCGATAGT+AGG | - | chr5.1:25052343-25052362 | None:intergenic | 40.0% | |
| CCTACTATCGGTAAGTTTCT+TGG | + | chr5.1:25052340-25052359 | MS.gene44370:intron | 40.0% | |
| CCTGCAATGATAGAAAACCA+GGG | - | chr5.1:25054891-25054910 | None:intergenic | 40.0% | |
| CTGTCTTTCACTGTAGTATG+TGG | + | chr5.1:25053226-25053245 | MS.gene44370:intron | 40.0% | |
| GCTACATAGGATGTTGAATG+AGG | + | chr5.1:25053373-25053392 | MS.gene44370:CDS | 40.0% | |
| TACAGTGAAAGACAGAAAGG+AGG | - | chr5.1:25053221-25053240 | None:intergenic | 40.0% | |
| TATGTTTAGGTGCTCAGAAG+GGG | - | chr5.1:25054737-25054756 | None:intergenic | 40.0% | |
| TCAAATGAGAAGCTCTCGTA+AGG | - | chr5.1:25052820-25052839 | None:intergenic | 40.0% | |
| TCAGCTGCATTCATTGCATT+GGG | - | chr5.1:25054029-25054048 | None:intergenic | 40.0% | |
| TGTGTTCTAACAAACGCTTC+CGG | + | chr5.1:25054147-25054166 | MS.gene44370:intron | 40.0% | |
| ! | GGTGCTATGTAGTTCACTAT+AGG | + | chr5.1:25052539-25052558 | MS.gene44370:intron | 40.0% |
| ACAAGTGCTCTGTATGTACC+TGG | - | chr5.1:25054178-25054197 | None:intergenic | 45.0% | |
| AGCTGAGATTACTGACAAGC+TGG | + | chr5.1:25054043-25054062 | MS.gene44370:CDS | 45.0% | |
| AGTCTCACTAGTCCCAAATC+AGG | - | chr5.1:25054374-25054393 | None:intergenic | 45.0% | |
| AGTGAAAGACAGAAAGGAGG+GGG | - | chr5.1:25053218-25053237 | None:intergenic | 45.0% | |
| ATGTTTAGGTGCTCAGAAGG+GGG | - | chr5.1:25054736-25054755 | None:intergenic | 45.0% | |
| CACTACTTCCAGAACACTCA+GGG | + | chr5.1:25053293-25053312 | MS.gene44370:CDS | 45.0% | |
| CACTCATATAGACCGTGTAG+TGG | + | chr5.1:25053473-25053492 | MS.gene44370:intron | 45.0% | |
| CAGTCGGTTATTTGCGAAGA+AGG | + | chr5.1:25052228-25052247 | MS.gene44370:CDS | 45.0% | |
| CAGTGAAAGACAGAAAGGAG+GGG | - | chr5.1:25053219-25053238 | None:intergenic | 45.0% | |
| CATCCTATGTAGCTCATCTC+TGG | - | chr5.1:25053366-25053385 | None:intergenic | 45.0% | |
| CATTCACGAAGCTGTTCAGT+CGG | + | chr5.1:25052212-25052231 | MS.gene44370:CDS | 45.0% | |
| CTCAGCTGCATTCATTGCAT+TGG | - | chr5.1:25054030-25054049 | None:intergenic | 45.0% | |
| CTTGAGCTTGTAGAGAATGG+TGG | - | chr5.1:25052296-25052315 | None:intergenic | 45.0% | |
| GACACACGTTTCTGAATGGT+CGG | + | chr5.1:25052518-25052537 | MS.gene44370:intron | 45.0% | |
| GAGGTCGCTTATTATTTCCC+TGG | + | chr5.1:25054871-25054890 | MS.gene44370:intron | 45.0% | |
| GCATCTAGATGCCTAGAGTA+TGG | - | chr5.1:25054632-25054651 | None:intergenic | 45.0% | |
| GCCTGCAATGATAGAAAACC+AGG | - | chr5.1:25054892-25054911 | None:intergenic | 45.0% | |
| GCTGAGATTACTGACAAGCT+GGG | + | chr5.1:25054044-25054063 | MS.gene44370:CDS | 45.0% | |
| GTCTCACTAGTCCCAAATCA+GGG | - | chr5.1:25054373-25054392 | None:intergenic | 45.0% | |
| GTCTTTATGAAGGTCTGGAC+TGG | + | chr5.1:25054214-25054233 | MS.gene44370:CDS | 45.0% | |
| GTGTTCTAACAAACGCTTCC+GGG | + | chr5.1:25054148-25054167 | MS.gene44370:intron | 45.0% | |
| TAAGCTCACACCCATACTCT+AGG | + | chr5.1:25054618-25054637 | MS.gene44370:intron | 45.0% | |
| TAGCCAAGAACTAAGAAGGC+TGG | - | chr5.1:25054832-25054851 | None:intergenic | 45.0% | |
| TCATATAGACCGTGTAGTGG+CGG | + | chr5.1:25053476-25053495 | MS.gene44370:intron | 45.0% | |
| TGACAGGGATAGAGTTGTTG+AGG | + | chr5.1:25053340-25053359 | MS.gene44370:CDS | 45.0% | |
| TGTCGTTGACAGCAATGACA+GGG | + | chr5.1:25053325-25053344 | MS.gene44370:CDS | 45.0% | |
| TTGTCGTTGACAGCAATGAC+AGG | + | chr5.1:25053324-25053343 | MS.gene44370:CDS | 45.0% | |
| ! | AGCTTCACTGTTTGGGATGT+CGG | + | chr5.1:25053117-25053136 | MS.gene44370:CDS | 45.0% |
| ! | AGTGCTTTTAGGCCCTGATT+TGG | + | chr5.1:25054358-25054377 | MS.gene44370:intron | 45.0% |
| ! | GTGCTTTTAGGCCCTGATTT+GGG | + | chr5.1:25054359-25054378 | MS.gene44370:intron | 45.0% |
| ! | TTGCCAGCCTTCTTAGTTCT+TGG | + | chr5.1:25054826-25054845 | MS.gene44370:intron | 45.0% |
| !! | CCCTGGTTTTCTATCATTGC+AGG | + | chr5.1:25054888-25054907 | MS.gene44370:intron | 45.0% |
| !! | TGAAATTATAATTAAAATAA+TGG | - | chr5.1:25053954-25053973 | None:intergenic | 5.0% |
| !! | TTCAAAAAAAAATAAAAAAA+GGG | - | chr5.1:25054515-25054534 | None:intergenic | 5.0% |
| !!! | ATTATTTTAATTATAATTTC+AGG | + | chr5.1:25053953-25053972 | MS.gene44370:intron | 5.0% |
| !!! | TTTTTTTTTCAAATAATTAT+CGG | - | chr5.1:25052462-25052481 | None:intergenic | 5.0% |
| AGGCCAGAGATGAGCTACAT+AGG | + | chr5.1:25053360-25053379 | MS.gene44370:CDS | 50.0% | |
| AGGGTTCAATGTGGAGACTG+TGG | + | chr5.1:25053080-25053099 | MS.gene44370:intron | 50.0% | |
| CATATAGACCGTGTAGTGGC+GGG | + | chr5.1:25053477-25053496 | MS.gene44370:intron | 50.0% | |
| CTGTATGTACCTGGAAGACC+CGG | - | chr5.1:25054169-25054188 | None:intergenic | 50.0% | |
| CTTACCGATAGTAGGGATGG+TGG | - | chr5.1:25052335-25052354 | None:intergenic | 50.0% | |
| GCACTACTTCCAGAACACTC+AGG | + | chr5.1:25053292-25053311 | MS.gene44370:CDS | 50.0% | |
| GGAGGGTCTTTATGAAGGTC+TGG | + | chr5.1:25054209-25054228 | MS.gene44370:CDS | 50.0% | |
| GTCACCACCATCCCTACTAT+CGG | + | chr5.1:25052328-25052347 | MS.gene44370:CDS | 50.0% | |
| GTGAAAGACAGAAAGGAGGG+GGG | - | chr5.1:25053217-25053236 | None:intergenic | 50.0% | |
| TCTGGGGAGGGTCTTTATGA+AGG | + | chr5.1:25054204-25054223 | MS.gene44370:CDS | 50.0% | |
| TGAAAGACAGAAAGGAGGGG+GGG | - | chr5.1:25053216-25053235 | None:intergenic | 50.0% | |
| TGGAAGTAGTGCCTCCACAA+GGG | - | chr5.1:25053284-25053303 | None:intergenic | 50.0% | |
| TTCATAAAGACCCTCCCCAG+AGG | - | chr5.1:25054205-25054224 | None:intergenic | 50.0% | |
| ! | AAGAGAAGAGCATGGACTCG+AGG | - | chr5.1:25053900-25053919 | None:intergenic | 50.0% |
| ! | TTCACTGTTTGGGATGTCGG+AGG | + | chr5.1:25053120-25053139 | MS.gene44370:CDS | 50.0% |
| !! | TGCAAGAGTGCTTCGCAGAA+AGG | + | chr5.1:25053001-25053020 | MS.gene44370:intron | 50.0% |
| AGTAGTGCCTCCACAAGGGA+CGG | - | chr5.1:25053280-25053299 | None:intergenic | 55.0% | |
| ATAAAGACCCTCCCCAGAGG+TGG | - | chr5.1:25054202-25054221 | None:intergenic | 55.0% | |
| CATTCCTTCCCGCCACTACA+CGG | - | chr5.1:25053488-25053507 | None:intergenic | 55.0% | |
| CTGGAAGTAGTGCCTCCACA+AGG | - | chr5.1:25053285-25053304 | None:intergenic | 55.0% | |
| TTCTCCAGATCCGTCCCTTG+TGG | + | chr5.1:25053267-25053286 | MS.gene44370:intron | 55.0% | |
| ! | AGAGCACTTGTGCCACCTCT+GGG | + | chr5.1:25054187-25054206 | MS.gene44370:CDS | 55.0% |
| !! | ATGGTTGGTCTCGATGCAGC+TGG | + | chr5.1:25052265-25052284 | MS.gene44370:CDS | 55.0% |
| ACTCTCTCAGACAGCGCCAC+TGG | + | chr5.1:25054072-25054091 | MS.gene44370:CDS | 60.0% | |
| CAAACGCTTCCGGGTCTTCC+AGG | + | chr5.1:25054157-25054176 | MS.gene44370:intron | 60.0% | |
| GAGCACTTGTGCCACCTCTG+GGG | + | chr5.1:25054188-25054207 | MS.gene44370:CDS | 60.0% | |
| TCCAGATCCGTCCCTTGTGG+AGG | + | chr5.1:25053270-25053289 | MS.gene44370:intron | 60.0% | |
| ! | ACTTGTGCCACCTCTGGGGA+GGG | + | chr5.1:25054192-25054211 | MS.gene44370:CDS | 60.0% |
| ! | CAGAGCACTTGTGCCACCTC+TGG | + | chr5.1:25054186-25054205 | MS.gene44370:CDS | 60.0% |
| ! | TAGACCGTGTAGTGGCGGGA+AGG | + | chr5.1:25053481-25053500 | MS.gene44370:intron | 60.0% |
| ! | TGTTTGGGATGTCGGAGGCC+AGG | + | chr5.1:25053125-25053144 | MS.gene44370:CDS | 60.0% |
| GCCTCCACAAGGGACGGATC+TGG | - | chr5.1:25053274-25053293 | None:intergenic | 65.0% | |
| GGATGTCGGAGGCCAGGACA+AGG | + | chr5.1:25053131-25053150 | MS.gene44370:CDS | 65.0% | |
| ! | CACTTGTGCCACCTCTGGGG+AGG | + | chr5.1:25054191-25054210 | MS.gene44370:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 25052202 | 25054915 | 25052202 | ID=MS.gene44370 |
| chr5.1 | mRNA | 25052202 | 25054915 | 25052202 | ID=MS.gene44370.t1;Parent=MS.gene44370 |
| chr5.1 | exon | 25052202 | 25052349 | 25052202 | ID=MS.gene44370.t1.exon1;Parent=MS.gene44370.t1 |
| chr5.1 | CDS | 25052202 | 25052349 | 25052202 | ID=cds.MS.gene44370.t1;Parent=MS.gene44370.t1 |
| chr5.1 | exon | 25053082 | 25053152 | 25053082 | ID=MS.gene44370.t1.exon2;Parent=MS.gene44370.t1 |
| chr5.1 | CDS | 25053082 | 25053152 | 25053082 | ID=cds.MS.gene44370.t1;Parent=MS.gene44370.t1 |
| chr5.1 | exon | 25053275 | 25053394 | 25053275 | ID=MS.gene44370.t1.exon3;Parent=MS.gene44370.t1 |
| chr5.1 | CDS | 25053275 | 25053394 | 25053275 | ID=cds.MS.gene44370.t1;Parent=MS.gene44370.t1 |
| chr5.1 | exon | 25053975 | 25054093 | 25053975 | ID=MS.gene44370.t1.exon4;Parent=MS.gene44370.t1 |
| chr5.1 | CDS | 25053975 | 25054093 | 25053975 | ID=cds.MS.gene44370.t1;Parent=MS.gene44370.t1 |
| chr5.1 | exon | 25054179 | 25054260 | 25054179 | ID=MS.gene44370.t1.exon5;Parent=MS.gene44370.t1 |
| chr5.1 | CDS | 25054179 | 25054260 | 25054179 | ID=cds.MS.gene44370.t1;Parent=MS.gene44370.t1 |
| chr5.1 | exon | 25054910 | 25054915 | 25054910 | ID=MS.gene44370.t1.exon6;Parent=MS.gene44370.t1 |
| chr5.1 | CDS | 25054910 | 25054915 | 25054910 | ID=cds.MS.gene44370.t1;Parent=MS.gene44370.t1 |
| Gene Sequence |
| Protein sequence |
