Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07339.t1 | RWR95192.1 | 100 | 181 | 0 | 0 | 1 | 181 | 52 | 232 | 4.80E-98 | 367.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07339.t1 | P51823 | 98.9 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 7.4e-100 | 364.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07339.t1 | A0A1U8L5V7 | 100.0 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 3.4e-98 | 367.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene07339 | 0.817055 | 4.02E-52 | -1.69E-46 |
| MS.gene049166 | MS.gene07339 | 0.823449 | 1.38E-53 | -1.69E-46 |
| MS.gene049208 | MS.gene07339 | 0.834016 | 3.82E-56 | -1.69E-46 |
| MS.gene049283 | MS.gene07339 | 0.826327 | 2.88E-54 | -1.69E-46 |
| MS.gene049368 | MS.gene07339 | 0.802705 | 4.94E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene07339 | 0.804607 | 1.99E-49 | -1.69E-46 |
| MS.gene049674 | MS.gene07339 | 0.812857 | 3.43E-51 | -1.69E-46 |
| MS.gene049786 | MS.gene07339 | 0.831522 | 1.59E-55 | -1.69E-46 |
| MS.gene050085 | MS.gene07339 | 0.829505 | 4.96E-55 | -1.69E-46 |
| MS.gene050114 | MS.gene07339 | 0.819328 | 1.23E-52 | -1.69E-46 |
| MS.gene050277 | MS.gene07339 | 0.803884 | 2.82E-49 | -1.69E-46 |
| MS.gene050317 | MS.gene07339 | 0.828191 | 1.03E-54 | -1.69E-46 |
| MS.gene050437 | MS.gene07339 | 0.814793 | 1.29E-51 | -1.69E-46 |
| MS.gene050439 | MS.gene07339 | 0.805256 | 1.46E-49 | -1.69E-46 |
| MS.gene050646 | MS.gene07339 | 0.802226 | 6.20E-49 | -1.69E-46 |
| MS.gene050654 | MS.gene07339 | 0.824622 | 7.31E-54 | -1.69E-46 |
| MS.gene050689 | MS.gene07339 | 0.821585 | 3.73E-53 | -1.69E-46 |
| MS.gene050752 | MS.gene07339 | 0.876238 | 1.64E-68 | -1.69E-46 |
| MS.gene050838 | MS.gene07339 | 0.873006 | 2.05E-67 | -1.69E-46 |
| MS.gene050945 | MS.gene07339 | 0.835276 | 1.84E-56 | -1.69E-46 |
| MS.gene050955 | MS.gene07339 | 0.854655 | 1.07E-61 | -1.69E-46 |
| MS.gene051003 | MS.gene07339 | 0.874892 | 4.73E-68 | -1.69E-46 |
| MS.gene051043 | MS.gene07339 | 0.802586 | 5.23E-49 | -1.69E-46 |
| MS.gene051233 | MS.gene07339 | 0.82798 | 1.16E-54 | -1.69E-46 |
| MS.gene051234 | MS.gene07339 | 0.864697 | 1.01E-64 | -1.69E-46 |
| MS.gene051343 | MS.gene07339 | 0.909895 | 3.43E-82 | -1.69E-46 |
| MS.gene051676 | MS.gene07339 | 0.869239 | 3.59E-66 | -1.69E-46 |
| MS.gene051748 | MS.gene07339 | 0.824892 | 6.31E-54 | -1.69E-46 |
| MS.gene051756 | MS.gene07339 | 0.843034 | 1.80E-58 | -1.69E-46 |
| MS.gene051757 | MS.gene07339 | 0.80187 | 7.34E-49 | -1.69E-46 |
| MS.gene05188 | MS.gene07339 | 0.851809 | 6.97E-61 | -1.69E-46 |
| MS.gene051902 | MS.gene07339 | 0.83925 | 1.77E-57 | -1.69E-46 |
| MS.gene051903 | MS.gene07339 | 0.847398 | 1.19E-59 | -1.69E-46 |
| MS.gene051975 | MS.gene07339 | 0.901597 | 2.28E-78 | -1.69E-46 |
| MS.gene052072 | MS.gene07339 | 0.84508 | 5.07E-59 | -1.69E-46 |
| MS.gene052242 | MS.gene07339 | -0.831538 | 1.58E-55 | -1.69E-46 |
| MS.gene052296 | MS.gene07339 | 0.808214 | 3.46E-50 | -1.69E-46 |
| MS.gene052307 | MS.gene07339 | 0.816195 | 6.27E-52 | -1.69E-46 |
| MS.gene052335 | MS.gene07339 | 0.829016 | 6.52E-55 | -1.69E-46 |
| MS.gene052342 | MS.gene07339 | 0.817916 | 2.57E-52 | -1.69E-46 |
| MS.gene052370 | MS.gene07339 | 0.80725 | 5.54E-50 | -1.69E-46 |
| MS.gene052434 | MS.gene07339 | 0.85185 | 6.78E-61 | -1.69E-46 |
| MS.gene052527 | MS.gene07339 | 0.808955 | 2.40E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene07339 | 0.81789 | 2.61E-52 | -1.69E-46 |
| MS.gene052932 | MS.gene07339 | 0.825694 | 4.08E-54 | -1.69E-46 |
| MS.gene052947 | MS.gene07339 | 0.844014 | 9.83E-59 | -1.69E-46 |
| MS.gene053045 | MS.gene07339 | 0.806833 | 6.79E-50 | -1.69E-46 |
| MS.gene053058 | MS.gene07339 | 0.869624 | 2.69E-66 | -1.69E-46 |
| MS.gene053109 | MS.gene07339 | 0.81409 | 1.84E-51 | -1.69E-46 |
| MS.gene053143 | MS.gene07339 | 0.812001 | 5.28E-51 | -1.69E-46 |
| MS.gene053298 | MS.gene07339 | 0.813628 | 2.32E-51 | -1.69E-46 |
| MS.gene053564 | MS.gene07339 | 0.868556 | 5.98E-66 | -1.69E-46 |
| MS.gene05364 | MS.gene07339 | 0.80439 | 2.21E-49 | -1.69E-46 |
| MS.gene053786 | MS.gene07339 | 0.820811 | 5.63E-53 | -1.69E-46 |
| MS.gene053931 | MS.gene07339 | 0.807797 | 4.24E-50 | -1.69E-46 |
| MS.gene053952 | MS.gene07339 | 0.861617 | 9.05E-64 | -1.69E-46 |
| MS.gene054004 | MS.gene07339 | 0.825446 | 4.67E-54 | -1.69E-46 |
| MS.gene054403 | MS.gene07339 | 0.875043 | 4.20E-68 | -1.69E-46 |
| MS.gene054413 | MS.gene07339 | 0.80279 | 4.75E-49 | -1.69E-46 |
| MS.gene054536 | MS.gene07339 | 0.806687 | 7.29E-50 | -1.69E-46 |
| MS.gene05469 | MS.gene07339 | 0.863336 | 2.68E-64 | -1.69E-46 |
| MS.gene054893 | MS.gene07339 | 0.801808 | 7.56E-49 | -1.69E-46 |
| MS.gene05517 | MS.gene07339 | 0.831062 | 2.07E-55 | -1.69E-46 |
| MS.gene055311 | MS.gene07339 | 0.866257 | 3.25E-65 | -1.69E-46 |
| MS.gene055313 | MS.gene07339 | 0.851644 | 7.76E-61 | -1.69E-46 |
| MS.gene055314 | MS.gene07339 | 0.861713 | 8.46E-64 | -1.69E-46 |
| MS.gene055424 | MS.gene07339 | 0.807982 | 3.87E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene07339 | 0.872538 | 2.95E-67 | -1.69E-46 |
| MS.gene055603 | MS.gene07339 | 0.853009 | 3.17E-61 | -1.69E-46 |
| MS.gene056045 | MS.gene07339 | 0.817569 | 3.08E-52 | -1.69E-46 |
| MS.gene056097 | MS.gene07339 | 0.831225 | 1.88E-55 | -1.69E-46 |
| MS.gene056181 | MS.gene07339 | 0.871155 | 8.48E-67 | -1.69E-46 |
| MS.gene056390 | MS.gene07339 | 0.806003 | 1.02E-49 | -1.69E-46 |
| MS.gene056403 | MS.gene07339 | 0.821112 | 4.80E-53 | -1.69E-46 |
| MS.gene056578 | MS.gene07339 | 0.814098 | 1.83E-51 | -1.69E-46 |
| MS.gene056580 | MS.gene07339 | 0.819903 | 9.09E-53 | -1.69E-46 |
| MS.gene056605 | MS.gene07339 | 0.818738 | 1.68E-52 | -1.69E-46 |
| MS.gene056631 | MS.gene07339 | 0.824918 | 6.22E-54 | -1.69E-46 |
| MS.gene056699 | MS.gene07339 | 0.838926 | 2.15E-57 | -1.69E-46 |
| MS.gene056787 | MS.gene07339 | 0.880831 | 3.97E-70 | -1.69E-46 |
| MS.gene056901 | MS.gene07339 | 0.804516 | 2.08E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene07339 | 0.890382 | 1.04E-73 | -1.69E-46 |
| MS.gene056992 | MS.gene07339 | 0.800688 | 1.28E-48 | -1.69E-46 |
| MS.gene057034 | MS.gene07339 | 0.801919 | 7.17E-49 | -1.69E-46 |
| MS.gene057057 | MS.gene07339 | 0.802182 | 6.33E-49 | -1.69E-46 |
| MS.gene057094 | MS.gene07339 | 0.840631 | 7.74E-58 | -1.69E-46 |
| MS.gene057102 | MS.gene07339 | 0.837012 | 6.68E-57 | -1.69E-46 |
| MS.gene057234 | MS.gene07339 | 0.825137 | 5.52E-54 | -1.69E-46 |
| MS.gene057360 | MS.gene07339 | 0.820456 | 6.80E-53 | -1.69E-46 |
| MS.gene057452 | MS.gene07339 | -0.810614 | 1.06E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene07339 | 0.804644 | 1.96E-49 | -1.69E-46 |
| MS.gene05781 | MS.gene07339 | 0.841326 | 5.09E-58 | -1.69E-46 |
| MS.gene057890 | MS.gene07339 | -0.836064 | 1.16E-56 | -1.69E-46 |
| MS.gene057999 | MS.gene07339 | 0.840942 | 6.42E-58 | -1.69E-46 |
| MS.gene058054 | MS.gene07339 | 0.808098 | 3.66E-50 | -1.69E-46 |
| MS.gene058055 | MS.gene07339 | 0.802717 | 4.91E-49 | -1.69E-46 |
| MS.gene058074 | MS.gene07339 | 0.807962 | 3.91E-50 | -1.69E-46 |
| MS.gene058238 | MS.gene07339 | 0.849607 | 2.90E-60 | -1.69E-46 |
| MS.gene058638 | MS.gene07339 | 0.821939 | 3.09E-53 | -1.69E-46 |
| MS.gene058639 | MS.gene07339 | 0.840449 | 8.64E-58 | -1.69E-46 |
| MS.gene058708 | MS.gene07339 | -0.802627 | 5.13E-49 | -1.69E-46 |
| MS.gene058758 | MS.gene07339 | 0.817828 | 2.69E-52 | -1.69E-46 |
| MS.gene05880 | MS.gene07339 | 0.801889 | 7.28E-49 | -1.69E-46 |
| MS.gene058852 | MS.gene07339 | 0.803211 | 3.89E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene07339 | 0.877743 | 4.92E-69 | -1.69E-46 |
| MS.gene059170 | MS.gene07339 | 0.808885 | 2.49E-50 | -1.69E-46 |
| MS.gene059171 | MS.gene07339 | 0.843392 | 1.44E-58 | -1.69E-46 |
| MS.gene059227 | MS.gene07339 | 0.852353 | 4.88E-61 | -1.69E-46 |
| MS.gene059360 | MS.gene07339 | 0.828051 | 1.11E-54 | -1.69E-46 |
| MS.gene059830 | MS.gene07339 | 0.807957 | 3.92E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene07339 | -0.829496 | 4.98E-55 | -1.69E-46 |
| MS.gene059901 | MS.gene07339 | -0.800506 | 1.40E-48 | -1.69E-46 |
| MS.gene059965 | MS.gene07339 | 0.801675 | 8.05E-49 | -1.69E-46 |
| MS.gene06001 | MS.gene07339 | 0.833344 | 5.63E-56 | -1.69E-46 |
| MS.gene06010 | MS.gene07339 | 0.820686 | 6.02E-53 | -1.69E-46 |
| MS.gene06011 | MS.gene07339 | 0.876436 | 1.40E-68 | -1.69E-46 |
| MS.gene060296 | MS.gene07339 | 0.801403 | 9.16E-49 | -1.69E-46 |
| MS.gene060365 | MS.gene07339 | 0.820544 | 6.49E-53 | -1.69E-46 |
| MS.gene060465 | MS.gene07339 | 0.80242 | 5.66E-49 | -1.69E-46 |
| MS.gene060763 | MS.gene07339 | 0.835671 | 1.47E-56 | -1.69E-46 |
| MS.gene060869 | MS.gene07339 | 0.808006 | 3.83E-50 | -1.69E-46 |
| MS.gene060870 | MS.gene07339 | 0.80496 | 1.68E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene07339 | 0.816284 | 5.99E-52 | -1.69E-46 |
| MS.gene060935 | MS.gene07339 | 0.805836 | 1.10E-49 | -1.69E-46 |
| MS.gene060937 | MS.gene07339 | 0.819686 | 1.02E-52 | -1.69E-46 |
| MS.gene061006 | MS.gene07339 | 0.809529 | 1.81E-50 | -1.69E-46 |
| MS.gene061100 | MS.gene07339 | 0.835322 | 1.79E-56 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07339.t1 | MTR_1g086480 | 100.000 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 2.45e-135 | 375 |
| MS.gene07339.t1 | MTR_5g034130 | 99.448 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 6.88e-135 | 374 |
| MS.gene07339.t1 | MTR_5g034125 | 99.448 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 6.88e-135 | 374 |
| MS.gene07339.t1 | MTR_7g109960 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 2.18e-134 | 373 |
| MS.gene07339.t1 | MTR_6g005820 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 2.71e-134 | 373 |
| MS.gene07339.t1 | MTR_5g016540 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 4.00e-120 | 337 |
| MS.gene07339.t1 | MTR_4g128910 | 63.277 | 177 | 65 | 0 | 1 | 177 | 1 | 177 | 5.77e-84 | 246 |
| MS.gene07339.t1 | MTR_5g007810 | 61.582 | 177 | 68 | 0 | 1 | 177 | 1 | 177 | 7.27e-83 | 243 |
| MS.gene07339.t1 | MTR_4g077640 | 60.452 | 177 | 70 | 0 | 1 | 177 | 1 | 177 | 1.49e-80 | 238 |
| MS.gene07339.t1 | MTR_5g007820 | 55.495 | 182 | 79 | 1 | 1 | 180 | 1 | 182 | 1.39e-75 | 224 |
| MS.gene07339.t1 | MTR_1g076550 | 51.934 | 181 | 87 | 0 | 1 | 181 | 1 | 181 | 1.47e-67 | 204 |
| MS.gene07339.t1 | MTR_5g007840 | 42.723 | 213 | 77 | 2 | 1 | 180 | 1 | 201 | 4.40e-57 | 178 |
| MS.gene07339.t1 | MTR_8g077540 | 48.485 | 165 | 82 | 3 | 18 | 180 | 17 | 180 | 9.90e-50 | 159 |
| MS.gene07339.t1 | MTR_8g077540 | 48.485 | 165 | 82 | 3 | 18 | 180 | 43 | 206 | 1.47e-49 | 159 |
| MS.gene07339.t1 | MTR_2g022200 | 34.831 | 178 | 105 | 2 | 5 | 173 | 5 | 180 | 4.75e-37 | 127 |
| MS.gene07339.t1 | MTR_5g078090 | 34.659 | 176 | 112 | 2 | 1 | 173 | 1 | 176 | 3.95e-31 | 111 |
| MS.gene07339.t1 | MTR_5g015370 | 32.065 | 184 | 122 | 2 | 1 | 181 | 1 | 184 | 3.84e-30 | 108 |
| MS.gene07339.t1 | MTR_8g077540 | 51.020 | 98 | 46 | 2 | 18 | 114 | 17 | 113 | 1.77e-28 | 103 |
| MS.gene07339.t1 | MTR_4g026950 | 31.847 | 157 | 106 | 1 | 18 | 173 | 1 | 157 | 5.60e-26 | 97.8 |
| MS.gene07339.t1 | MTR_2g034640 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 1.07e-24 | 95.5 |
| MS.gene07339.t1 | MTR_7g112090 | 31.073 | 177 | 106 | 2 | 15 | 177 | 18 | 192 | 2.71e-24 | 94.4 |
| MS.gene07339.t1 | MTR_4g121860 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 8.95e-23 | 90.5 |
| MS.gene07339.t1 | MTR_1g062760 | 34.118 | 85 | 52 | 1 | 18 | 98 | 15 | 99 | 2.44e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07339.t1 | AT1G10630 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 4.60e-134 | 372 |
| MS.gene07339.t1 | AT1G10630 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 4.60e-134 | 372 |
| MS.gene07339.t1 | AT5G14670 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 8.06e-134 | 372 |
| MS.gene07339.t1 | AT5G14670 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 8.06e-134 | 372 |
| MS.gene07339.t1 | AT3G62290 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 8.70e-134 | 372 |
| MS.gene07339.t1 | AT3G62290 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 8.70e-134 | 372 |
| MS.gene07339.t1 | AT3G62290 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 8.70e-134 | 372 |
| MS.gene07339.t1 | AT1G70490 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 1.12e-133 | 371 |
| MS.gene07339.t1 | AT1G70490 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 1.12e-133 | 371 |
| MS.gene07339.t1 | AT1G70490 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 1.12e-133 | 371 |
| MS.gene07339.t1 | AT1G70490 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 1.12e-133 | 371 |
| MS.gene07339.t1 | AT1G70490 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 1.12e-133 | 371 |
| MS.gene07339.t1 | AT1G70490 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 1.12e-133 | 371 |
| MS.gene07339.t1 | AT1G23490 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 1.12e-133 | 371 |
| MS.gene07339.t1 | AT1G70490 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 1.12e-133 | 371 |
| MS.gene07339.t1 | AT2G47170 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 1.17e-133 | 371 |
| MS.gene07339.t1 | AT2G47170 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 1.17e-133 | 371 |
| MS.gene07339.t1 | AT2G47170 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 1.17e-133 | 371 |
| MS.gene07339.t1 | AT5G14670 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 5.85e-133 | 370 |
| MS.gene07339.t1 | AT2G15310 | 67.403 | 181 | 59 | 0 | 1 | 181 | 1 | 181 | 3.02e-91 | 265 |
| MS.gene07339.t1 | AT2G24765 | 62.147 | 177 | 67 | 0 | 1 | 177 | 1 | 177 | 2.02e-84 | 247 |
| MS.gene07339.t1 | AT5G17060 | 58.659 | 179 | 74 | 0 | 1 | 179 | 1 | 179 | 1.95e-81 | 239 |
| MS.gene07339.t1 | AT5G17060 | 58.659 | 179 | 74 | 0 | 1 | 179 | 1 | 179 | 1.95e-81 | 239 |
| MS.gene07339.t1 | AT3G03120 | 59.887 | 177 | 71 | 0 | 1 | 177 | 1 | 177 | 1.21e-80 | 238 |
| MS.gene07339.t1 | AT3G22950 | 53.039 | 181 | 85 | 0 | 1 | 181 | 1 | 181 | 1.13e-70 | 212 |
| MS.gene07339.t1 | AT3G22950 | 53.039 | 181 | 85 | 0 | 1 | 181 | 1 | 181 | 1.13e-70 | 212 |
| MS.gene07339.t1 | AT2G24765 | 64.844 | 128 | 45 | 0 | 1 | 128 | 1 | 128 | 1.70e-60 | 184 |
| MS.gene07339.t1 | AT3G03120 | 62.308 | 130 | 49 | 0 | 1 | 130 | 1 | 130 | 1.30e-59 | 182 |
| MS.gene07339.t1 | AT1G02430 | 48.936 | 188 | 82 | 5 | 1 | 176 | 1 | 186 | 6.56e-57 | 177 |
| MS.gene07339.t1 | AT1G02440 | 45.699 | 186 | 91 | 4 | 1 | 176 | 1 | 186 | 2.48e-55 | 173 |
| MS.gene07339.t1 | AT2G18390 | 48.485 | 165 | 82 | 3 | 18 | 180 | 17 | 180 | 3.63e-49 | 157 |
| MS.gene07339.t1 | AT1G02430 | 47.205 | 161 | 75 | 4 | 1 | 153 | 1 | 159 | 3.40e-45 | 147 |
| MS.gene07339.t1 | AT5G52210 | 34.091 | 176 | 109 | 1 | 5 | 173 | 5 | 180 | 6.30e-36 | 124 |
| MS.gene07339.t1 | AT5G52210 | 34.091 | 176 | 109 | 1 | 5 | 173 | 5 | 180 | 6.30e-36 | 124 |
| MS.gene07339.t1 | AT3G49870 | 34.091 | 176 | 113 | 2 | 1 | 173 | 1 | 176 | 2.20e-32 | 115 |
| MS.gene07339.t1 | AT5G67560 | 33.742 | 163 | 107 | 1 | 12 | 173 | 14 | 176 | 2.58e-31 | 112 |
| MS.gene07339.t1 | AT5G37680 | 33.523 | 176 | 114 | 2 | 1 | 173 | 1 | 176 | 2.02e-30 | 109 |
| MS.gene07339.t1 | AT3G49870 | 33.121 | 157 | 104 | 1 | 18 | 173 | 1 | 157 | 5.13e-29 | 105 |
| MS.gene07339.t1 | AT3G49860 | 32.530 | 166 | 111 | 1 | 16 | 180 | 10 | 175 | 2.10e-28 | 104 |
| MS.gene07339.t1 | AT1G02440 | 33.117 | 154 | 67 | 3 | 1 | 153 | 1 | 119 | 3.74e-26 | 97.1 |
| MS.gene07339.t1 | AT1G09180 | 32.961 | 179 | 104 | 2 | 13 | 177 | 16 | 192 | 2.89e-25 | 97.1 |
| MS.gene07339.t1 | AT3G62560 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 1.36e-24 | 95.1 |
| MS.gene07339.t1 | AT5G37680 | 32.812 | 128 | 86 | 0 | 46 | 173 | 2 | 129 | 4.36e-24 | 92.4 |
| MS.gene07339.t1 | AT1G56330 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 5.17e-24 | 93.6 |
| MS.gene07339.t1 | AT4G02080 | 31.073 | 177 | 106 | 2 | 15 | 177 | 18 | 192 | 5.69e-24 | 93.6 |
Find 41 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGAGTCCTTGTGTATTT+TGG | 0.168116 | 1.2:-65144877 | None:intergenic |
| AAGTATACGCATCTCTTTCT+TGG | 0.288003 | 1.2:-65143978 | None:intergenic |
| TCAGCAGCATTCATAGCATT+TGG | 0.364943 | 1.2:-65145225 | None:intergenic |
| AGAACATCAGCTTCACTGTC+TGG | 0.385102 | 1.2:+65144198 | MS.gene07339:CDS |
| GAAAGAGATGCGTATACTTA+TGG | 0.386945 | 1.2:+65143982 | MS.gene07339:CDS |
| ATTCTTTATAAGCTCAAGCT+TGG | 0.418391 | 1.2:+65144034 | MS.gene07339:CDS |
| CAGAGCACATGTGCCACATC+TGG | 0.447819 | 1.2:+65145394 | MS.gene07339:CDS |
| TGTCTGGGATGTCGGAGGTC+AGG | 0.455909 | 1.2:+65144214 | MS.gene07339:CDS |
| ACTCTCTCCGTCAGCGTCAC+TGG | 0.468160 | 1.2:+65145271 | MS.gene07339:CDS |
| CATTCACGAAGCTGTTTAGC+CGG | 0.473064 | 1.2:+65143948 | MS.gene07339:CDS |
| AGCTTCACTGTCTGGGATGT+CGG | 0.473789 | 1.2:+65144206 | MS.gene07339:CDS |
| CAGATGTGGCACATGTGCTC+TGG | 0.476593 | 1.2:-65145393 | None:intergenic |
| AAGCTTGAGCTTATAAAGAA+TGG | 0.497488 | 1.2:-65144032 | None:intergenic |
| GTAAGATACATACCGATAGT+AGG | 0.498973 | 1.2:-65144076 | None:intergenic |
| CTCAAACAACATTGCAAACA+AGG | 0.503713 | 1.2:+65145447 | MS.gene07339:CDS |
| AAGCTAGAGATGAGCTGCAC+AGG | 0.506543 | 1.2:+65144936 | MS.gene07339:CDS |
| TCTCTTTCTTGGCAAATAGC+CGG | 0.506749 | 1.2:-65143967 | None:intergenic |
| TTGTGGTTGATAGCAATGAC+AGG | 0.519491 | 1.2:+65144900 | MS.gene07339:CDS |
| GAACATCAGCTTCACTGTCT+GGG | 0.522077 | 1.2:+65144199 | MS.gene07339:CDS |
| ATGGTAGGTCTCGATGCAGC+TGG | 0.562008 | 1.2:+65144001 | MS.gene07339:CDS |
| GACTTTATGAAGGACTTGAC+TGG | 0.563819 | 1.2:+65145422 | MS.gene07339:CDS |
| ATAAAGTCCTTCACCAGATG+TGG | 0.566017 | 1.2:-65145407 | None:intergenic |
| TCTGGTGAAGGACTTTATGA+AGG | 0.585343 | 1.2:+65145412 | MS.gene07339:CDS |
| AGTAATGTCTCCACAGAGGA+CGG | 0.585615 | 1.2:-65144853 | None:intergenic |
| CCCTGTAGATCCGTCCTCTG+TGG | 0.597050 | 1.2:+65144843 | MS.gene07339:intron |
| GTTACAACCATTCCTACTAT+CGG | 0.597928 | 1.2:+65144064 | MS.gene07339:CDS |
| ATACATACCGATAGTAGGAA+TGG | 0.605406 | 1.2:-65144071 | None:intergenic |
| CTTGAGCTTATAAAGAATGG+TGG | 0.605632 | 1.2:-65144029 | None:intergenic |
| GCTGAGATAACTGATAAGCT+TGG | 0.619937 | 1.2:+65145243 | MS.gene07339:CDS |
| TTCACTGTCTGGGATGTCGG+AGG | 0.622588 | 1.2:+65144209 | MS.gene07339:CDS |
| GAGATGCGTATACTTATGGT+AGG | 0.623901 | 1.2:+65143986 | MS.gene07339:CDS |
| TAGTTTACCAGTGACGCTGA+CGG | 0.637651 | 1.2:-65145278 | None:intergenic |
| ACATGTGCCACATCTGGTGA+AGG | 0.638525 | 1.2:+65145400 | MS.gene07339:CDS |
| GGATGTCGGAGGTCAGGACA+AGG | 0.643668 | 1.2:+65144220 | MS.gene07339:CDS |
| CATTACTTCCAAAATACACA+AGG | 0.651419 | 1.2:+65144869 | MS.gene07339:CDS |
| TGTGGTTGATAGCAATGACA+GGG | 0.656079 | 1.2:+65144901 | MS.gene07339:CDS |
| AGGGTTCAATGTGGAAACAG+TGG | 0.658334 | 1.2:+65144169 | MS.gene07339:intron |
| CATCTCTAGCTTCAACAACA+CGG | 0.660245 | 1.2:-65144925 | None:intergenic |
| TGTATATGTAGGGTTCAATG+TGG | 0.687704 | 1.2:+65144160 | MS.gene07339:intron |
| GCTGCACAGGATGTTGAATG+AGG | 0.712176 | 1.2:+65144949 | MS.gene07339:CDS |
| TGGAAGTAATGTCTCCACAG+AGG | 0.750469 | 1.2:-65144857 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGATGTACTATAATCTTT+CGG | + | chr1.2:65144721-65144740 | MS.gene07339:intron | 20.0% |
| !! | TCACTTATTCAACATATATT+TGG | - | chr1.2:65145036-65145055 | None:intergenic | 20.0% |
| !!! | AATGAAAGGTTGATTATTTA+TGG | + | chr1.2:65144999-65145018 | MS.gene07339:intron | 20.0% |
| !!! | ACATATATTTTTCACATTTG+TGG | + | chr1.2:65144487-65144506 | MS.gene07339:intron | 20.0% |
| !!! | ATTAGAACTGAAATTTTGAA+AGG | - | chr1.2:65144388-65144407 | None:intergenic | 20.0% |
| !!! | CATATATTTTTCACATTTGT+GGG | + | chr1.2:65144488-65144507 | MS.gene07339:intron | 20.0% |
| ! | AAAAAAAAATCACTGCACAT+TGG | - | chr1.2:65144525-65144544 | None:intergenic | 25.0% |
| ! | AATAAGTGAAAATGAAAGGT+TGG | + | chr1.2:65145047-65145066 | MS.gene07339:intron | 25.0% |
| ! | AATGGATCATTGTATATGTA+GGG | + | chr1.2:65144150-65144169 | MS.gene07339:intron | 25.0% |
| ! | ATGATGTACTATAATCTTTC+GGG | + | chr1.2:65144722-65144741 | MS.gene07339:intron | 25.0% |
| ! | ATTATGGCTCATTGTATTAA+TGG | + | chr1.2:65144132-65144151 | MS.gene07339:intron | 25.0% |
| ! | ATTTCATTGATGCTATAACA+TGG | + | chr1.2:65144309-65144328 | MS.gene07339:intron | 25.0% |
| ! | GTATCTTACTATGTTTGTAT+TGG | + | chr1.2:65144090-65144109 | MS.gene07339:intron | 25.0% |
| ! | GTTGAATAAGTGAAAATGAA+AGG | + | chr1.2:65145043-65145062 | MS.gene07339:intron | 25.0% |
| ! | TCACTCATTCAACATATATT+TGG | - | chr1.2:65145094-65145113 | None:intergenic | 25.0% |
| ! | TTATAGTACATCATAACAAG+AGG | - | chr1.2:65144716-65144735 | None:intergenic | 25.0% |
| ! | TTTGGATGCTTATAATACTT+TGG | + | chr1.2:65145148-65145167 | MS.gene07339:intron | 25.0% |
| !! | AATGAAAGGTTGGTTATTTA+TGG | + | chr1.2:65145057-65145076 | MS.gene07339:intron | 25.0% |
| !! | TAATGGATCATTGTATATGT+AGG | + | chr1.2:65144149-65144168 | MS.gene07339:intron | 25.0% |
| !! | TATAGTTGTAATCTTTTCCA+TGG | + | chr1.2:65144438-65144457 | MS.gene07339:intron | 25.0% |
| !!! | AAATCTTGTTTTACTGAACA+TGG | + | chr1.2:65144751-65144770 | MS.gene07339:intron | 25.0% |
| !!! | AACTAATGCCTTTCTTTTTT+GGG | + | chr1.2:65145525-65145544 | MS.gene07339:intron | 25.0% |
| !!! | TAGATCTTTTTTACTCAACA+TGG | + | chr1.2:65144798-65144817 | MS.gene07339:intron | 25.0% |
| AAGCTTGAGCTTATAAAGAA+TGG | - | chr1.2:65144035-65144054 | None:intergenic | 30.0% | |
| AATGAGTGAAAATGAAAGGT+TGG | + | chr1.2:65144989-65145008 | MS.gene07339:intron | 30.0% | |
| ATTCTTTATAAGCTCAAGCT+TGG | + | chr1.2:65144034-65144053 | MS.gene07339:CDS | 30.0% | |
| CATTACTTCCAAAATACACA+AGG | + | chr1.2:65144869-65144888 | MS.gene07339:CDS | 30.0% | |
| GATTTCTGTGATCATGATTA+TGG | + | chr1.2:65144116-65144135 | MS.gene07339:intron | 30.0% | |
| GTTGAATGAGTGAAAATGAA+AGG | + | chr1.2:65145101-65145120 | MS.gene07339:intron | 30.0% | |
| TGATGCTATAACATGGTAAT+TGG | + | chr1.2:65144316-65144335 | MS.gene07339:intron | 30.0% | |
| ! | AAATGAGTCCTTGTGTATTT+TGG | - | chr1.2:65144880-65144899 | None:intergenic | 30.0% |
| ! | GAAAGGTTGGTTATTTATGT+GGG | + | chr1.2:65145118-65145137 | MS.gene07339:intron | 30.0% |
| ! | TGAAAGGTTGGTTATTTATG+TGG | + | chr1.2:65145059-65145078 | MS.gene07339:intron | 30.0% |
| ! | TTTTCTCATTGCATCTTCTA+CGG | + | chr1.2:65144247-65144266 | MS.gene07339:intron | 30.0% |
| !! | CAAAAAAGAAAGGCATTAGT+TGG | - | chr1.2:65145526-65145545 | None:intergenic | 30.0% |
| !! | TAAGAGTGTTGAATTCAAGA+AGG | - | chr1.2:65144590-65144609 | None:intergenic | 30.0% |
| !!! | CAACTAATGCCTTTCTTTTT+TGG | + | chr1.2:65145524-65145543 | MS.gene07339:intron | 30.0% |
| AAGTATACGCATCTCTTTCT+TGG | - | chr1.2:65143981-65144000 | None:intergenic | 35.0% | |
| AATCACCTACTCTAACTTTC+TGG | + | chr1.2:65144636-65144655 | MS.gene07339:intron | 35.0% | |
| AGGTCAAATGGAAGATAACT+TGG | - | chr1.2:65144696-65144715 | None:intergenic | 35.0% | |
| ATACATACCGATAGTAGGAA+TGG | - | chr1.2:65144074-65144093 | None:intergenic | 35.0% | |
| CACATCTACATCTTAATCCA+TGG | - | chr1.2:65144458-65144477 | None:intergenic | 35.0% | |
| CATCATAACAAGAGGTCAAA+TGG | - | chr1.2:65144708-65144727 | None:intergenic | 35.0% | |
| CTCAAACAACATTGCAAACA+AGG | + | chr1.2:65145447-65145466 | MS.gene07339:CDS | 35.0% | |
| CTTGAGCTTATAAAGAATGG+TGG | - | chr1.2:65144032-65144051 | None:intergenic | 35.0% | |
| GAAAGAGATGCGTATACTTA+TGG | + | chr1.2:65143982-65144001 | MS.gene07339:CDS | 35.0% | |
| GATGCTTATAATACTTTGGC+AGG | + | chr1.2:65145152-65145171 | MS.gene07339:intron | 35.0% | |
| GCTGAATGAGTGAAAATGAA+AGG | + | chr1.2:65144985-65145004 | MS.gene07339:intron | 35.0% | |
| GGTCAAATGGAAGATAACTT+GGG | - | chr1.2:65144695-65144714 | None:intergenic | 35.0% | |
| GTAAGATACATACCGATAGT+AGG | - | chr1.2:65144079-65144098 | None:intergenic | 35.0% | |
| GTTACAACCATTCCTACTAT+CGG | + | chr1.2:65144064-65144083 | MS.gene07339:CDS | 35.0% | |
| TATCTCCAGAAAGTTAGAGT+AGG | - | chr1.2:65144644-65144663 | None:intergenic | 35.0% | |
| TGTATATGTAGGGTTCAATG+TGG | + | chr1.2:65144160-65144179 | MS.gene07339:intron | 35.0% | |
| ! | ATTTATGTGGGTCGTCATTT+TGG | + | chr1.2:65145130-65145149 | MS.gene07339:intron | 35.0% |
| !! | TACACAAGGACTCATTTTTG+TGG | + | chr1.2:65144883-65144902 | MS.gene07339:CDS | 35.0% |
| !!! | TAATGCCTTTCTTTTTTGGG+CGG | + | chr1.2:65145528-65145547 | MS.gene07339:intron | 35.0% |
| AATCACCGCCCAAAAAAGAA+AGG | - | chr1.2:65145536-65145555 | None:intergenic | 40.0% | |
| ATAAAGTCCTTCACCAGATG+TGG | - | chr1.2:65145410-65145429 | None:intergenic | 40.0% | |
| ATGACGGTGAGAATGAGTAA+TGG | - | chr1.2:65145351-65145370 | None:intergenic | 40.0% | |
| ATTACTCATTCTCACCGTCA+TGG | + | chr1.2:65145350-65145369 | MS.gene07339:intron | 40.0% | |
| GAAGATAACTTGGGTCAAAG+GGG | - | chr1.2:65144686-65144705 | None:intergenic | 40.0% | |
| GACTTTATGAAGGACTTGAC+TGG | + | chr1.2:65145422-65145441 | MS.gene07339:CDS | 40.0% | |
| GAGATGCGTATACTTATGGT+AGG | + | chr1.2:65143986-65144005 | MS.gene07339:CDS | 40.0% | |
| GCTGAGATAACTGATAAGCT+TGG | + | chr1.2:65145243-65145262 | MS.gene07339:CDS | 40.0% | |
| GGAAGATAACTTGGGTCAAA+GGG | - | chr1.2:65144687-65144706 | None:intergenic | 40.0% | |
| GTTAGAGTAGGTGATTGAGT+AGG | - | chr1.2:65144632-65144651 | None:intergenic | 40.0% | |
| TCACAAACATACTTGCTCGA+GGG | - | chr1.2:65144351-65144370 | None:intergenic | 40.0% | |
| TCAGCAGCATTCATAGCATT+TGG | - | chr1.2:65145228-65145247 | None:intergenic | 40.0% | |
| TCTCTTTCTTGGCAAATAGC+CGG | - | chr1.2:65143970-65143989 | None:intergenic | 40.0% | |
| TCTGGTGAAGGACTTTATGA+AGG | + | chr1.2:65145412-65145431 | MS.gene07339:CDS | 40.0% | |
| TGGAAGATAACTTGGGTCAA+AGG | - | chr1.2:65144688-65144707 | None:intergenic | 40.0% | |
| TTCACAAACATACTTGCTCG+AGG | - | chr1.2:65144352-65144371 | None:intergenic | 40.0% | |
| ! | CATCTCTAGCTTCAACAACA+CGG | - | chr1.2:65144928-65144947 | None:intergenic | 40.0% |
| ! | GTAATGGAAGCAGGAAGATA+AGG | - | chr1.2:65145335-65145354 | None:intergenic | 40.0% |
| ! | TGAGAATGAGTAATGGAAGC+AGG | - | chr1.2:65145344-65145363 | None:intergenic | 40.0% |
| !! | TGTGGTTGATAGCAATGACA+GGG | + | chr1.2:65144901-65144920 | MS.gene07339:CDS | 40.0% |
| !! | TTGTGGTTGATAGCAATGAC+AGG | + | chr1.2:65144900-65144919 | MS.gene07339:CDS | 40.0% |
| AGAACATCAGCTTCACTGTC+TGG | + | chr1.2:65144198-65144217 | MS.gene07339:CDS | 45.0% | |
| AGGGTTCAATGTGGAAACAG+TGG | + | chr1.2:65144169-65144188 | MS.gene07339:intron | 45.0% | |
| AGTAATGTCTCCACAGAGGA+CGG | - | chr1.2:65144856-65144875 | None:intergenic | 45.0% | |
| CATTCACGAAGCTGTTTAGC+CGG | + | chr1.2:65143948-65143967 | MS.gene07339:CDS | 45.0% | |
| CTGCATGTACAGATCCATGA+CGG | - | chr1.2:65145367-65145386 | None:intergenic | 45.0% | |
| GAACATCAGCTTCACTGTCT+GGG | + | chr1.2:65144199-65144218 | MS.gene07339:CDS | 45.0% | |
| TAGTTTACCAGTGACGCTGA+CGG | - | chr1.2:65145281-65145300 | None:intergenic | 45.0% | |
| TGGAAGCAGGAAGATAAGGA+AGG | - | chr1.2:65145331-65145350 | None:intergenic | 45.0% | |
| TGGAAGTAATGTCTCCACAG+AGG | - | chr1.2:65144860-65144879 | None:intergenic | 45.0% | |
| AAGCTAGAGATGAGCTGCAC+AGG | + | chr1.2:65144936-65144955 | MS.gene07339:CDS | 50.0% | |
| ACATGTGCCACATCTGGTGA+AGG | + | chr1.2:65145400-65145419 | MS.gene07339:CDS | 50.0% | |
| CGTCATGGATCTGTACATGC+AGG | + | chr1.2:65145365-65145384 | MS.gene07339:intron | 50.0% | |
| GCTGCACAGGATGTTGAATG+AGG | + | chr1.2:65144949-65144968 | MS.gene07339:CDS | 50.0% | |
| ! | AGCTTCACTGTCTGGGATGT+CGG | + | chr1.2:65144206-65144225 | MS.gene07339:CDS | 50.0% |
| ATGGTAGGTCTCGATGCAGC+TGG | + | chr1.2:65144001-65144020 | MS.gene07339:CDS | 55.0% | |
| CAGAGCACATGTGCCACATC+TGG | + | chr1.2:65145394-65145413 | MS.gene07339:CDS | 55.0% | |
| CAGATGTGGCACATGTGCTC+TGG | - | chr1.2:65145396-65145415 | None:intergenic | 55.0% | |
| CCACAGAGGACGGATCTACA+GGG | - | chr1.2:65144846-65144865 | None:intergenic | 55.0% | |
| TCCACAGAGGACGGATCTAC+AGG | - | chr1.2:65144847-65144866 | None:intergenic | 55.0% | |
| ! | TTCACTGTCTGGGATGTCGG+AGG | + | chr1.2:65144209-65144228 | MS.gene07339:CDS | 55.0% |
| !! | TTTGGGCGGTGATTTGCTGC+AGG | + | chr1.2:65145542-65145561 | MS.gene07339:intron | 55.0% |
| ACTCTCTCCGTCAGCGTCAC+TGG | + | chr1.2:65145271-65145290 | MS.gene07339:CDS | 60.0% | |
| CCCTGTAGATCCGTCCTCTG+TGG | + | chr1.2:65144843-65144862 | MS.gene07339:intron | 60.0% | |
| GGATGTCGGAGGTCAGGACA+AGG | + | chr1.2:65144220-65144239 | MS.gene07339:CDS | 60.0% | |
| ! | TGTCTGGGATGTCGGAGGTC+AGG | + | chr1.2:65144214-65144233 | MS.gene07339:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 65143938 | 65145569 | 65143938 | ID=MS.gene07339 |
| chr1.2 | mRNA | 65143938 | 65145569 | 65143938 | ID=MS.gene07339.t1;Parent=MS.gene07339 |
| chr1.2 | exon | 65143938 | 65144085 | 65143938 | ID=MS.gene07339.t1.exon1;Parent=MS.gene07339.t1 |
| chr1.2 | CDS | 65143938 | 65144085 | 65143938 | ID=cds.MS.gene07339.t1;Parent=MS.gene07339.t1 |
| chr1.2 | exon | 65144171 | 65144241 | 65144171 | ID=MS.gene07339.t1.exon2;Parent=MS.gene07339.t1 |
| chr1.2 | CDS | 65144171 | 65144241 | 65144171 | ID=cds.MS.gene07339.t1;Parent=MS.gene07339.t1 |
| chr1.2 | exon | 65144851 | 65144970 | 65144851 | ID=MS.gene07339.t1.exon3;Parent=MS.gene07339.t1 |
| chr1.2 | CDS | 65144851 | 65144970 | 65144851 | ID=cds.MS.gene07339.t1;Parent=MS.gene07339.t1 |
| chr1.2 | exon | 65145174 | 65145292 | 65145174 | ID=MS.gene07339.t1.exon4;Parent=MS.gene07339.t1 |
| chr1.2 | CDS | 65145174 | 65145292 | 65145174 | ID=cds.MS.gene07339.t1;Parent=MS.gene07339.t1 |
| chr1.2 | exon | 65145387 | 65145468 | 65145387 | ID=MS.gene07339.t1.exon5;Parent=MS.gene07339.t1 |
| chr1.2 | CDS | 65145387 | 65145468 | 65145387 | ID=cds.MS.gene07339.t1;Parent=MS.gene07339.t1 |
| chr1.2 | exon | 65145564 | 65145569 | 65145564 | ID=MS.gene07339.t1.exon6;Parent=MS.gene07339.t1 |
| chr1.2 | CDS | 65145564 | 65145569 | 65145564 | ID=cds.MS.gene07339.t1;Parent=MS.gene07339.t1 |
| Gene Sequence |
| Protein sequence |
