Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82876.t1 | XP_003618209.1 | 100 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 6.20E-98 | 366.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82876.t1 | Q06396 | 99.4 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 4.4e-100 | 365.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82876.t1 | A0A059AQR8 | 100.0 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 4.5e-98 | 366.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053011 | MS.gene82876 | 0.993967 | 1.47E-203 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82876.t1 | MTR_6g005820 | 100.000 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 2.22e-135 | 375 |
| MS.gene82876.t1 | MTR_5g034130 | 99.448 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 9.56e-135 | 374 |
| MS.gene82876.t1 | MTR_5g034125 | 99.448 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 9.56e-135 | 374 |
| MS.gene82876.t1 | MTR_7g109960 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 1.26e-134 | 374 |
| MS.gene82876.t1 | MTR_1g086480 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 2.71e-134 | 373 |
| MS.gene82876.t1 | MTR_5g016540 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 9.51e-120 | 336 |
| MS.gene82876.t1 | MTR_4g128910 | 63.128 | 179 | 66 | 0 | 1 | 179 | 1 | 179 | 1.03e-84 | 248 |
| MS.gene82876.t1 | MTR_5g007810 | 61.582 | 177 | 68 | 0 | 1 | 177 | 1 | 177 | 4.49e-83 | 244 |
| MS.gene82876.t1 | MTR_4g077640 | 60.452 | 177 | 70 | 0 | 1 | 177 | 1 | 177 | 1.94e-80 | 237 |
| MS.gene82876.t1 | MTR_5g007820 | 55.495 | 182 | 79 | 1 | 1 | 180 | 1 | 182 | 1.95e-75 | 224 |
| MS.gene82876.t1 | MTR_1g076550 | 51.934 | 181 | 87 | 0 | 1 | 181 | 1 | 181 | 1.30e-67 | 204 |
| MS.gene82876.t1 | MTR_5g007840 | 42.723 | 213 | 77 | 2 | 1 | 180 | 1 | 201 | 5.07e-57 | 178 |
| MS.gene82876.t1 | MTR_8g077540 | 49.091 | 165 | 81 | 3 | 18 | 180 | 17 | 180 | 2.71e-50 | 160 |
| MS.gene82876.t1 | MTR_8g077540 | 49.091 | 165 | 81 | 3 | 18 | 180 | 43 | 206 | 5.19e-50 | 160 |
| MS.gene82876.t1 | MTR_2g022200 | 34.831 | 178 | 105 | 2 | 5 | 173 | 5 | 180 | 4.70e-37 | 127 |
| MS.gene82876.t1 | MTR_5g078090 | 34.091 | 176 | 113 | 2 | 1 | 173 | 1 | 176 | 8.97e-31 | 110 |
| MS.gene82876.t1 | MTR_5g015370 | 32.609 | 184 | 121 | 2 | 1 | 181 | 1 | 184 | 1.91e-30 | 110 |
| MS.gene82876.t1 | MTR_8g077540 | 51.020 | 98 | 46 | 2 | 18 | 114 | 17 | 113 | 1.57e-28 | 103 |
| MS.gene82876.t1 | MTR_4g026950 | 31.707 | 164 | 111 | 1 | 18 | 180 | 1 | 164 | 2.20e-26 | 99.0 |
| MS.gene82876.t1 | MTR_2g034640 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 1.08e-24 | 95.5 |
| MS.gene82876.t1 | MTR_7g112090 | 31.073 | 177 | 106 | 2 | 15 | 177 | 18 | 192 | 2.77e-24 | 94.4 |
| MS.gene82876.t1 | MTR_4g121860 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 7.71e-23 | 90.5 |
| MS.gene82876.t1 | MTR_1g062760 | 34.118 | 85 | 52 | 1 | 18 | 98 | 15 | 99 | 2.73e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82876.t1 | AT1G10630 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 3.03e-134 | 373 |
| MS.gene82876.t1 | AT1G10630 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 3.03e-134 | 373 |
| MS.gene82876.t1 | AT5G14670 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 4.17e-134 | 372 |
| MS.gene82876.t1 | AT5G14670 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 4.17e-134 | 372 |
| MS.gene82876.t1 | AT2G47170 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 7.54e-134 | 372 |
| MS.gene82876.t1 | AT2G47170 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 7.54e-134 | 372 |
| MS.gene82876.t1 | AT2G47170 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 7.54e-134 | 372 |
| MS.gene82876.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.07e-133 | 370 |
| MS.gene82876.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.07e-133 | 370 |
| MS.gene82876.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.07e-133 | 370 |
| MS.gene82876.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.07e-133 | 370 |
| MS.gene82876.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.07e-133 | 370 |
| MS.gene82876.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.07e-133 | 370 |
| MS.gene82876.t1 | AT1G23490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.07e-133 | 370 |
| MS.gene82876.t1 | AT1G70490 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 2.07e-133 | 370 |
| MS.gene82876.t1 | AT5G14670 | 98.343 | 181 | 3 | 0 | 1 | 181 | 1 | 181 | 3.69e-133 | 370 |
| MS.gene82876.t1 | AT3G62290 | 97.790 | 181 | 4 | 0 | 1 | 181 | 1 | 181 | 1.20e-132 | 369 |
| MS.gene82876.t1 | AT3G62290 | 97.790 | 181 | 4 | 0 | 1 | 181 | 1 | 181 | 1.20e-132 | 369 |
| MS.gene82876.t1 | AT3G62290 | 97.790 | 181 | 4 | 0 | 1 | 181 | 1 | 181 | 1.20e-132 | 369 |
| MS.gene82876.t1 | AT2G15310 | 66.851 | 181 | 60 | 0 | 1 | 181 | 1 | 181 | 2.03e-90 | 263 |
| MS.gene82876.t1 | AT2G24765 | 62.011 | 179 | 68 | 0 | 1 | 179 | 1 | 179 | 3.95e-85 | 249 |
| MS.gene82876.t1 | AT3G03120 | 60.452 | 177 | 70 | 0 | 1 | 177 | 1 | 177 | 3.72e-81 | 239 |
| MS.gene82876.t1 | AT5G17060 | 59.322 | 177 | 72 | 0 | 1 | 177 | 1 | 177 | 3.76e-81 | 239 |
| MS.gene82876.t1 | AT5G17060 | 59.322 | 177 | 72 | 0 | 1 | 177 | 1 | 177 | 3.76e-81 | 239 |
| MS.gene82876.t1 | AT3G22950 | 53.039 | 181 | 85 | 0 | 1 | 181 | 1 | 181 | 1.16e-70 | 212 |
| MS.gene82876.t1 | AT3G22950 | 53.039 | 181 | 85 | 0 | 1 | 181 | 1 | 181 | 1.16e-70 | 212 |
| MS.gene82876.t1 | AT2G24765 | 64.844 | 128 | 45 | 0 | 1 | 128 | 1 | 128 | 1.09e-60 | 185 |
| MS.gene82876.t1 | AT3G03120 | 63.077 | 130 | 48 | 0 | 1 | 130 | 1 | 130 | 4.49e-60 | 183 |
| MS.gene82876.t1 | AT1G02430 | 48.936 | 188 | 82 | 5 | 1 | 176 | 1 | 186 | 9.60e-57 | 177 |
| MS.gene82876.t1 | AT1G02440 | 46.237 | 186 | 90 | 4 | 1 | 176 | 1 | 186 | 6.92e-56 | 175 |
| MS.gene82876.t1 | AT2G18390 | 49.091 | 165 | 81 | 3 | 18 | 180 | 17 | 180 | 1.12e-49 | 159 |
| MS.gene82876.t1 | AT1G02430 | 47.205 | 161 | 75 | 4 | 1 | 153 | 1 | 159 | 5.14e-45 | 146 |
| MS.gene82876.t1 | AT5G52210 | 34.091 | 176 | 109 | 1 | 5 | 173 | 5 | 180 | 6.87e-36 | 124 |
| MS.gene82876.t1 | AT5G52210 | 34.091 | 176 | 109 | 1 | 5 | 173 | 5 | 180 | 6.87e-36 | 124 |
| MS.gene82876.t1 | AT3G49870 | 33.880 | 183 | 118 | 2 | 1 | 180 | 1 | 183 | 1.10e-32 | 115 |
| MS.gene82876.t1 | AT5G67560 | 33.742 | 163 | 107 | 1 | 12 | 173 | 14 | 176 | 2.39e-31 | 112 |
| MS.gene82876.t1 | AT5G37680 | 32.955 | 176 | 115 | 2 | 1 | 173 | 1 | 176 | 4.88e-30 | 108 |
| MS.gene82876.t1 | AT3G49870 | 32.927 | 164 | 109 | 1 | 18 | 180 | 1 | 164 | 1.88e-29 | 107 |
| MS.gene82876.t1 | AT3G49860 | 33.133 | 166 | 110 | 1 | 16 | 180 | 10 | 175 | 7.25e-29 | 105 |
| MS.gene82876.t1 | AT1G02440 | 33.766 | 154 | 66 | 3 | 1 | 153 | 1 | 119 | 1.02e-26 | 98.6 |
| MS.gene82876.t1 | AT1G09180 | 32.961 | 179 | 104 | 2 | 13 | 177 | 16 | 192 | 3.25e-25 | 96.7 |
| MS.gene82876.t1 | AT3G62560 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 1.30e-24 | 95.1 |
| MS.gene82876.t1 | AT5G37680 | 32.812 | 128 | 86 | 0 | 46 | 173 | 2 | 129 | 4.18e-24 | 92.4 |
| MS.gene82876.t1 | AT1G56330 | 31.638 | 177 | 105 | 2 | 15 | 177 | 18 | 192 | 5.00e-24 | 93.6 |
| MS.gene82876.t1 | AT4G02080 | 31.073 | 177 | 106 | 2 | 15 | 177 | 18 | 192 | 5.22e-24 | 93.6 |
Find 45 sgRNAs with CRISPR-Local
Find 253 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATAAGACCCTGGGTGTTC+TGG | 0.268231 | 6.1:-1535224 | None:intergenic |
| CAGAGCACTTGTGCAACTTC+TGG | 0.283751 | 6.1:+1536280 | MS.gene82876:CDS |
| AGAGGGTCTTTATGAGGGTT+TGG | 0.332698 | 6.1:+1536303 | MS.gene82876:CDS |
| GCTTCACCGTGTGGGATGTC+GGG | 0.356155 | 6.1:+1534634 | MS.gene82876:CDS |
| CAGTAGGTTGTTTGCGAAGA+AGG | 0.366217 | 6.1:+1532425 | MS.gene82876:CDS |
| TCTGCAGCATTCATTGCATT+TGG | 0.388382 | 6.1:-1535934 | None:intergenic |
| AGCTTCACCGTGTGGGATGT+CGG | 0.397098 | 6.1:+1534633 | MS.gene82876:CDS |
| TTCTGGAGAGGGTCTTTATG+AGG | 0.405541 | 6.1:+1536297 | MS.gene82876:CDS |
| GTCTTTATGAGGGTTTGGAC+TGG | 0.477919 | 6.1:+1536308 | MS.gene82876:CDS |
| ATTCTCTCCGCCAACGCCAC+TGG | 0.484693 | 6.1:+1535980 | MS.gene82876:CDS |
| CTTCACCGTGTGGGATGTCG+GGG | 0.486668 | 6.1:+1534635 | MS.gene82876:CDS |
| GGAAGTAATGCCTCCACAAT+GGG | 0.487329 | 6.1:-1535203 | None:intergenic |
| TTCTAACAACATTGCAAGCA+AGG | 0.487356 | 6.1:+1536333 | MS.gene82876:CDS |
| ATTTGGAAGATCTTGTTTGT+TGG | 0.492492 | 6.1:-1535917 | None:intergenic |
| CTTCATACCAGTGGCGTTGG+CGG | 0.492667 | 6.1:-1535987 | None:intergenic |
| AGACCGAGTGGTTGAGGCAA+GGG | 0.502924 | 6.1:+1535269 | MS.gene82876:CDS |
| TGATAGAGACCGAGTGGTTG+AGG | 0.512695 | 6.1:+1535263 | MS.gene82876:CDS |
| CGTTCACGAAGCTGTTCAGT+AGG | 0.541353 | 6.1:+1532409 | MS.gene82876:CDS |
| GTTACTACCATCCCTACCAT+TGG | 0.542784 | 6.1:+1532525 | MS.gene82876:CDS |
| ATGGTAGGTCTCGATGCGGC+TGG | 0.552532 | 6.1:+1532462 | MS.gene82876:CDS |
| GCAGAAATAACTGACAAACT+TGG | 0.552853 | 6.1:+1535952 | MS.gene82876:CDS |
| TCTGGAGAGGGTCTTTATGA+GGG | 0.558851 | 6.1:+1536298 | MS.gene82876:CDS |
| CATCCCTTGCCTCAACCACT+CGG | 0.565995 | 6.1:-1535272 | None:intergenic |
| GATCTTCATACCAGTGGCGT+TGG | 0.567883 | 6.1:-1535990 | None:intergenic |
| ATCTGCAGATCCGCCCATTG+TGG | 0.576990 | 6.1:+1535190 | MS.gene82876:intron |
| GCTGATGTTCTTGTACTCCA+CGG | 0.581443 | 6.1:-1534613 | None:intergenic |
| AGGCAAGGGATGAATTGCAC+AGG | 0.586704 | 6.1:+1535283 | MS.gene82876:CDS |
| GTATTGAACTAACCAATGGT+AGG | 0.587944 | 6.1:-1532537 | None:intergenic |
| TGCAGATCCGCCCATTGTGG+AGG | 0.589244 | 6.1:+1535193 | MS.gene82876:intron |
| TATTGAACTAACCAATGGTA+GGG | 0.589286 | 6.1:-1532536 | None:intergenic |
| GAACTAACCAATGGTAGGGA+TGG | 0.590928 | 6.1:-1532532 | None:intergenic |
| TGGAAGTAATGCCTCCACAA+TGG | 0.593003 | 6.1:-1535204 | None:intergenic |
| GAGACCGAGTGGTTGAGGCA+AGG | 0.594397 | 6.1:+1535268 | MS.gene82876:CDS |
| CACTTGTGCAACTTCTGGAG+AGG | 0.598038 | 6.1:+1536285 | MS.gene82876:CDS |
| ACTTGTGCAACTTCTGGAGA+GGG | 0.603681 | 6.1:+1536286 | MS.gene82876:CDS |
| AGTAATGCCTCCACAATGGG+CGG | 0.622929 | 6.1:-1535200 | None:intergenic |
| AGGATTTAATGTTGAAACCG+TGG | 0.626322 | 6.1:+1534596 | MS.gene82876:intron |
| GAACATCAGCTTCACCGTGT+GGG | 0.628419 | 6.1:+1534626 | MS.gene82876:CDS |
| CATTACTTCCAGAACACCCA+GGG | 0.648785 | 6.1:+1535216 | MS.gene82876:CDS |
| TTCACCGTGTGGGATGTCGG+GGG | 0.658294 | 6.1:+1534636 | MS.gene82876:CDS |
| AGAACATCAGCTTCACCGTG+TGG | 0.663793 | 6.1:+1534625 | MS.gene82876:CDS |
| GCATTACTTCCAGAACACCC+AGG | 0.681110 | 6.1:+1535215 | MS.gene82876:CDS |
| ATTGCACAGGATGTTGAATG+AGG | 0.696400 | 6.1:+1535296 | MS.gene82876:CDS |
| TTTGATGGTAGGTCTCGATG+CGG | 0.707868 | 6.1:+1532458 | MS.gene82876:CDS |
| TAGCAATGATAGAGACCGAG+TGG | 0.713240 | 6.1:+1535257 | MS.gene82876:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATGATAATTAAAATAAT+TGG | + | chr6.1:1532780-1532799 | MS.gene82876:intron | 10.0% |
| !! | GTATATATCTATATAATAAT+TGG | + | chr6.1:1534556-1534575 | MS.gene82876:intron | 10.0% |
| !!! | AAAATATATTACTTTGTTTT+CGG | + | chr6.1:1535420-1535439 | MS.gene82876:intron | 10.0% |
| !!! | AACAATAATTTTTTTCAATT+GGG | + | chr6.1:1533320-1533339 | MS.gene82876:intron | 10.0% |
| !!! | TATGATTAGTTATTAATAAA+TGG | + | chr6.1:1534146-1534165 | MS.gene82876:intron | 10.0% |
| !! | AAAATGTTAAATCATAATTG+AGG | - | chr6.1:1536077-1536096 | None:intergenic | 15.0% |
| !! | ATATTGGAAATATATAATGT+TGG | + | chr6.1:1535829-1535848 | MS.gene82876:intron | 15.0% |
| !! | ATCTACATAATTATAACATA+AGG | - | chr6.1:1532691-1532710 | None:intergenic | 15.0% |
| !! | ATGTATTATTTGTATATATG+AGG | + | chr6.1:1536610-1536629 | MS.gene82876:intron | 15.0% |
| !! | TAAAAATCAATATTGAGAAA+GGG | - | chr6.1:1532562-1532581 | None:intergenic | 15.0% |
| !! | TATTAATAACTAATCATAAG+TGG | - | chr6.1:1534144-1534163 | None:intergenic | 15.0% |
| !! | TTACCATTATACATAATTAA+AGG | + | chr6.1:1535778-1535797 | MS.gene82876:intron | 15.0% |
| !!! | AAATATATTACTTTGTTTTC+GGG | + | chr6.1:1535421-1535440 | MS.gene82876:intron | 15.0% |
| !!! | ACAAAGTAATATATTTTTAG+AGG | - | chr6.1:1535417-1535436 | None:intergenic | 15.0% |
| !!! | GAACAATAATTTTTTTCAAT+TGG | + | chr6.1:1533319-1533338 | MS.gene82876:intron | 15.0% |
| !!! | TCACATCATATTTAATTTAA+TGG | - | chr6.1:1532898-1532917 | None:intergenic | 15.0% |
| !!! | TCTTTTATATAATACTATCT+TGG | + | chr6.1:1536096-1536115 | MS.gene82876:intron | 15.0% |
| !! | AAAAGAGATGTAAAATAGTT+AGG | + | chr6.1:1533230-1533249 | MS.gene82876:intron | 20.0% |
| !! | AAAGAGATGTAAAATAGTTA+GGG | + | chr6.1:1533231-1533250 | MS.gene82876:intron | 20.0% |
| !! | ATAAATCCAAGTTGTATAAA+CGG | - | chr6.1:1534172-1534191 | None:intergenic | 20.0% |
| !! | ATACTATAACATCTTCTAAA+TGG | - | chr6.1:1533497-1533516 | None:intergenic | 20.0% |
| !! | ATTGTATTATAAGTATGCAA+AGG | + | chr6.1:1536485-1536504 | MS.gene82876:intron | 20.0% |
| !! | GTAAAAATCAATATTGAGAA+AGG | - | chr6.1:1532563-1532582 | None:intergenic | 20.0% |
| !! | GTTAAAATTCAGAAATTTGA+AGG | - | chr6.1:1534255-1534274 | None:intergenic | 20.0% |
| !! | TAAAATAGTTAGGGATATAT+TGG | + | chr6.1:1533240-1533259 | MS.gene82876:intron | 20.0% |
| !! | TAAAGTTGTTAGATAAAGAT+CGG | - | chr6.1:1534323-1534342 | None:intergenic | 20.0% |
| !! | TTATATAATACTATCTTGGA+GGG | + | chr6.1:1536100-1536119 | MS.gene82876:intron | 20.0% |
| !! | TTTATATAATACTATCTTGG+AGG | + | chr6.1:1536099-1536118 | MS.gene82876:intron | 20.0% |
| !!! | AATTATTTTTGCTAGTTTTC+TGG | - | chr6.1:1535543-1535562 | None:intergenic | 20.0% |
| !!! | ACACTTTTTTCAATATAATG+AGG | + | chr6.1:1535152-1535171 | MS.gene82876:intron | 20.0% |
| !!! | ATCTCAATGATAAATTTTAC+AGG | - | chr6.1:1532725-1532744 | None:intergenic | 20.0% |
| !!! | ATTATTTTTGCTAGTTTTCT+GGG | - | chr6.1:1535542-1535561 | None:intergenic | 20.0% |
| !!! | ATTCCATTACAATGTTTTTT+GGG | + | chr6.1:1535124-1535143 | MS.gene82876:intron | 20.0% |
| !!! | ATTTTGTATAAATTGAAGCT+TGG | + | chr6.1:1532495-1532514 | MS.gene82876:CDS | 20.0% |
| !!! | CACTTTTTTCAATATAATGA+GGG | + | chr6.1:1535153-1535172 | MS.gene82876:intron | 20.0% |
| !!! | TATTCCATTACAATGTTTTT+TGG | + | chr6.1:1535123-1535142 | MS.gene82876:intron | 20.0% |
| !!! | TATTTATGCATGTTTGTTAA+AGG | + | chr6.1:1533370-1533389 | MS.gene82876:intron | 20.0% |
| !!! | TGGAATAATTTTTTATCTAC+AGG | + | chr6.1:1534576-1534595 | MS.gene82876:intron | 20.0% |
| !!! | TTTAAAGATCTAAAACAAAC+AGG | - | chr6.1:1533012-1533031 | None:intergenic | 20.0% |
| !!! | TTTTATTGTAGGTATGTTTT+TGG | + | chr6.1:1535640-1535659 | MS.gene82876:intron | 20.0% |
| ! | AAACCCAAAAAACATTGTAA+TGG | - | chr6.1:1535130-1535149 | None:intergenic | 25.0% |
| ! | AACAAAATATTCACACTCAT+AGG | + | chr6.1:1532746-1532765 | MS.gene82876:intron | 25.0% |
| ! | AAGGAGAAATGTAATATGTA+AGG | + | chr6.1:1536512-1536531 | MS.gene82876:intron | 25.0% |
| ! | AATAAAAGACGTAGGTAAAA+AGG | + | chr6.1:1534864-1534883 | MS.gene82876:intron | 25.0% |
| ! | AATAATTGGTCGTTGTATTA+AGG | + | chr6.1:1532794-1532813 | MS.gene82876:intron | 25.0% |
| ! | AATGTACATATGTCATCTTA+TGG | + | chr6.1:1534531-1534550 | MS.gene82876:intron | 25.0% |
| ! | ACATACCTACAATAAAATCT+TGG | - | chr6.1:1535637-1535656 | None:intergenic | 25.0% |
| ! | ATAAAAGACGTAGGTAAAAA+GGG | + | chr6.1:1534865-1534884 | MS.gene82876:intron | 25.0% |
| ! | ATAAGTATGCAAAGGTTAAA+AGG | + | chr6.1:1536493-1536512 | MS.gene82876:intron | 25.0% |
| ! | ATATATCAATCCATTATGCA+GGG | - | chr6.1:1533439-1533458 | None:intergenic | 25.0% |
| ! | ATTATGTAGATGATACTAGT+TGG | + | chr6.1:1536400-1536419 | MS.gene82876:intron | 25.0% |
| ! | ATTCATAGTTTCACACTATA+TGG | + | chr6.1:1535692-1535711 | MS.gene82876:intron | 25.0% |
| ! | CAGCCTTTAATTATGTATAA+TGG | - | chr6.1:1535784-1535803 | None:intergenic | 25.0% |
| ! | CATAACTAAAACGTCAAAAA+TGG | - | chr6.1:1533037-1533056 | None:intergenic | 25.0% |
| ! | GAAATCTAGAAATTGTGAAT+TGG | + | chr6.1:1534448-1534467 | MS.gene82876:intron | 25.0% |
| ! | TACATTAGAAACACAATTTG+TGG | - | chr6.1:1534517-1534536 | None:intergenic | 25.0% |
| ! | TATACAACTTGGATTTATCA+TGG | + | chr6.1:1534174-1534193 | MS.gene82876:intron | 25.0% |
| ! | TATCATGGTAATAAAACTAC+TGG | + | chr6.1:1534189-1534208 | MS.gene82876:intron | 25.0% |
| ! | TCATACAAGATAAACAACAA+AGG | - | chr6.1:1535346-1535365 | None:intergenic | 25.0% |
| ! | TCTTCTAAATGGAGAAATAA+AGG | - | chr6.1:1533486-1533505 | None:intergenic | 25.0% |
| ! | TGAGTTACAATAAAAAAGGT+AGG | - | chr6.1:1536643-1536662 | None:intergenic | 25.0% |
| ! | TGTGTAAGATATTCACAAAT+TGG | + | chr6.1:1533061-1533080 | MS.gene82876:intron | 25.0% |
| ! | TTGTATTAAGGCAAATTCTA+TGG | + | chr6.1:1532806-1532825 | MS.gene82876:intron | 25.0% |
| !! | AGTGATAGTCTTAAGTATAT+TGG | + | chr6.1:1535813-1535832 | MS.gene82876:intron | 25.0% |
| !! | ATCAACCAAGATTTTATTGT+AGG | + | chr6.1:1535629-1535648 | MS.gene82876:intron | 25.0% |
| !! | GTTTTATATAACAGTCAATG+TGG | + | chr6.1:1533934-1533953 | MS.gene82876:intron | 25.0% |
| !! | TCACAATTTCTAGATTTCAA+TGG | - | chr6.1:1534446-1534465 | None:intergenic | 25.0% |
| !!! | TACCTTTTTTATTGTAACTC+AGG | + | chr6.1:1536642-1536661 | MS.gene82876:intron | 25.0% |
| !!! | TATGTTTTTGGTGTTCTTAA+TGG | + | chr6.1:1535652-1535671 | MS.gene82876:intron | 25.0% |
| AAACAAACAGGCCTTTAATA+TGG | - | chr6.1:1533000-1533019 | None:intergenic | 30.0% | |
| AACAAACAGGCCTTTAATAT+GGG | - | chr6.1:1532999-1533018 | None:intergenic | 30.0% | |
| AGCAACTCTATAGACTTAAT+GGG | + | chr6.1:1535589-1535608 | MS.gene82876:intron | 30.0% | |
| ATTTGAAGGATGTTTATCTC+AGG | - | chr6.1:1534241-1534260 | None:intergenic | 30.0% | |
| ATTTGTTCCAGAAAAACAAG+AGG | - | chr6.1:1536467-1536486 | None:intergenic | 30.0% | |
| CACAAATTTATTTCCACCAT+TGG | + | chr6.1:1532858-1532877 | MS.gene82876:intron | 30.0% | |
| CATAGTGTTAGAAGAAGAAA+GGG | + | chr6.1:1533806-1533825 | MS.gene82876:intron | 30.0% | |
| CATATATCAATCCATTATGC+AGG | - | chr6.1:1533440-1533459 | None:intergenic | 30.0% | |
| GTTTGAATAGGAAAAGAAGA+TGG | - | chr6.1:1533706-1533725 | None:intergenic | 30.0% | |
| TAAAAGACGTAGGTAAAAAG+GGG | + | chr6.1:1534866-1534885 | MS.gene82876:intron | 30.0% | |
| TAGCAACTCTATAGACTTAA+TGG | + | chr6.1:1535588-1535607 | MS.gene82876:intron | 30.0% | |
| TATACAAGCTTCCATAATGT+GGG | + | chr6.1:1534777-1534796 | MS.gene82876:intron | 30.0% | |
| TATATAACAAACATCTGCAG+AGG | - | chr6.1:1535737-1535756 | None:intergenic | 30.0% | |
| TATATCAATCCATTATGCAG+GGG | - | chr6.1:1533438-1533457 | None:intergenic | 30.0% | |
| TATTGAACTAACCAATGGTA+GGG | - | chr6.1:1532539-1532558 | None:intergenic | 30.0% | |
| TCATAGTGTTAGAAGAAGAA+AGG | + | chr6.1:1533805-1533824 | MS.gene82876:intron | 30.0% | |
| TCCAGTCATTGCATTAAAAA+TGG | - | chr6.1:1536243-1536262 | None:intergenic | 30.0% | |
| TGCCTGAGTTACAATAAAAA+AGG | - | chr6.1:1536647-1536666 | None:intergenic | 30.0% | |
| TGTATTCTAAACGTGAACTT+AGG | + | chr6.1:1534285-1534304 | MS.gene82876:intron | 30.0% | |
| TTAGACAAAGCCCATATTAA+AGG | + | chr6.1:1532986-1533005 | MS.gene82876:intron | 30.0% | |
| TTCGAACATCGATCAAAATA+AGG | - | chr6.1:1535031-1535050 | None:intergenic | 30.0% | |
| TTTGAAGGATGTTTATCTCA+GGG | - | chr6.1:1534240-1534259 | None:intergenic | 30.0% | |
| ! | ACATTGTAATGGAATACACA+TGG | - | chr6.1:1535119-1535138 | None:intergenic | 30.0% |
| ! | ACTCTGTCACTTAATAATAG+TGG | - | chr6.1:1534840-1534859 | None:intergenic | 30.0% |
| ! | ATGGATTGATATATGAAAGC+TGG | + | chr6.1:1533445-1533464 | MS.gene82876:intron | 30.0% |
| ! | ATTTGGAAGATCTTGTTTGT+TGG | - | chr6.1:1535920-1535939 | None:intergenic | 30.0% |
| ! | CATTGTAATGGAATACACAT+GGG | - | chr6.1:1535118-1535137 | None:intergenic | 30.0% |
| ! | TCTCTTTTTGTTAGTAGCAA+TGG | - | chr6.1:1533218-1533237 | None:intergenic | 30.0% |
| ! | TTGCTACATCGTTTCATTTT+TGG | + | chr6.1:1534991-1535010 | MS.gene82876:intron | 30.0% |
| !! | GTAAAGAAAATGGGTTTTGA+TGG | - | chr6.1:1533743-1533762 | None:intergenic | 30.0% |
| !! | TCCATTTTAAAGATTGCGTT+GGG | + | chr6.1:1534086-1534105 | MS.gene82876:intron | 30.0% |
| !! | TCCATTTTTAATGCAATGAC+TGG | + | chr6.1:1536239-1536258 | MS.gene82876:intron | 30.0% |
| !! | TTCCATTTTAAAGATTGCGT+TGG | + | chr6.1:1534085-1534104 | MS.gene82876:intron | 30.0% |
| !! | TTCTTGCTGTCTCTTTTAAT+AGG | - | chr6.1:1533302-1533321 | None:intergenic | 30.0% |
| !!! | AATTTGACCCATTTTTCAAG+AGG | + | chr6.1:1533410-1533429 | MS.gene82876:intron | 30.0% |
| !!! | ATTTGACCCATTTTTCAAGA+GGG | + | chr6.1:1533411-1533430 | MS.gene82876:intron | 30.0% |
| AAAAGACGTAGGTAAAAAGG+GGG | + | chr6.1:1534867-1534886 | MS.gene82876:intron | 35.0% | |
| AAATGGCCGTTTATACAACT+TGG | + | chr6.1:1534163-1534182 | MS.gene82876:intron | 35.0% | |
| AACCACAAAAATAAGACCCT+GGG | - | chr6.1:1535235-1535254 | None:intergenic | 35.0% | |
| AAGTTGGCGGTAAAGAAAAT+GGG | - | chr6.1:1533752-1533771 | None:intergenic | 35.0% | |
| AATTAATCCCTGCTCTTGAA+TGG | - | chr6.1:1533187-1533206 | None:intergenic | 35.0% | |
| ACATGCAAAAGTAACTACGA+AGG | - | chr6.1:1535385-1535404 | None:intergenic | 35.0% | |
| AGATACTACTTTCATCCCTA+AGG | - | chr6.1:1534034-1534053 | None:intergenic | 35.0% | |
| AGGATTTAATGTTGAAACCG+TGG | + | chr6.1:1534596-1534615 | MS.gene82876:intron | 35.0% | |
| AGTCTATAGAGTTGCTATCA+AGG | - | chr6.1:1535585-1535604 | None:intergenic | 35.0% | |
| ATAATGTTGGTATGTGAACC+TGG | + | chr6.1:1535842-1535861 | MS.gene82876:intron | 35.0% | |
| CTATACAAGCTTCCATAATG+TGG | + | chr6.1:1534776-1534795 | MS.gene82876:intron | 35.0% | |
| CTGAAACAAAATTACCATCC+AGG | - | chr6.1:1535863-1535882 | None:intergenic | 35.0% | |
| CTTCTAACACTATGACTTCT+TGG | - | chr6.1:1533800-1533819 | None:intergenic | 35.0% | |
| GAGTGAAGAATAAAAGACGT+AGG | + | chr6.1:1534856-1534875 | MS.gene82876:intron | 35.0% | |
| GATTCAACGAGAGTTTGAAT+AGG | - | chr6.1:1533718-1533737 | None:intergenic | 35.0% | |
| GCAATGACTGGATTTATTTC+AGG | + | chr6.1:1536251-1536270 | MS.gene82876:intron | 35.0% | |
| GCAGAAATAACTGACAAACT+TGG | + | chr6.1:1535952-1535971 | MS.gene82876:CDS | 35.0% | |
| GTATTGAACTAACCAATGGT+AGG | - | chr6.1:1532540-1532559 | None:intergenic | 35.0% | |
| GTGAACTTAGGAATGTTAGT+TGG | + | chr6.1:1534297-1534316 | MS.gene82876:intron | 35.0% | |
| GTGACTTTATGATCAAATGC+TGG | + | chr6.1:1532914-1532933 | MS.gene82876:intron | 35.0% | |
| TGATACTTGTGCAATCATTG+TGG | - | chr6.1:1534355-1534374 | None:intergenic | 35.0% | |
| TGTCTATTATGCTTGTTTCC+TGG | + | chr6.1:1534686-1534705 | MS.gene82876:intron | 35.0% | |
| TTATGTACTGTGTATGACTG+TGG | + | chr6.1:1535077-1535096 | MS.gene82876:intron | 35.0% | |
| TTCTAACAACATTGCAAGCA+AGG | + | chr6.1:1536333-1536352 | MS.gene82876:CDS | 35.0% | |
| ! | ATCCTTGAACATTTGTTGCT+AGG | + | chr6.1:1533961-1533980 | MS.gene82876:intron | 35.0% |
| ! | ATGCTTGACAACACTTTTGT+TGG | + | chr6.1:1535474-1535493 | MS.gene82876:intron | 35.0% |
| ! | CAATTGGGTCTTGTGTTTAT+GGG | + | chr6.1:1533335-1533354 | MS.gene82876:intron | 35.0% |
| ! | CTCTTGGTGATTAGTTAATC+TGG | - | chr6.1:1536202-1536221 | None:intergenic | 35.0% |
| ! | GAAGGAGATGAGAATTTTGA+TGG | + | chr6.1:1532443-1532462 | MS.gene82876:CDS | 35.0% |
| ! | GCAATATGTCTTTTCTCTGT+TGG | - | chr6.1:1533634-1533653 | None:intergenic | 35.0% |
| ! | TAAGTTGGCGGTAAAGAAAA+TGG | - | chr6.1:1533753-1533772 | None:intergenic | 35.0% |
| ! | TCAATTGGGTCTTGTGTTTA+TGG | + | chr6.1:1533334-1533353 | MS.gene82876:intron | 35.0% |
| ! | TGCTTGACAACACTTTTGTT+GGG | + | chr6.1:1535475-1535494 | MS.gene82876:intron | 35.0% |
| ! | TTCACACTATATGGTTTGCA+CGG | + | chr6.1:1535701-1535720 | MS.gene82876:intron | 35.0% |
| !! | AAGGGTATTGAACTAACCAA+TGG | - | chr6.1:1532544-1532563 | None:intergenic | 35.0% |
| !! | AGTTGGATGATTTGTTCACT+TGG | + | chr6.1:1536417-1536436 | MS.gene82876:intron | 35.0% |
| !! | CCATTTTAAAGATTGCGTTG+GGG | + | chr6.1:1534087-1534106 | MS.gene82876:intron | 35.0% |
| !! | CTGGATGGTAATTTTGTTTC+AGG | + | chr6.1:1535861-1535880 | MS.gene82876:intron | 35.0% |
| !! | GAGATGAGAATTTTGATGGT+AGG | + | chr6.1:1532447-1532466 | MS.gene82876:CDS | 35.0% |
| !!! | GTGTTTTTTGTTTGCGTTTC+AGG | + | chr6.1:1534394-1534413 | MS.gene82876:intron | 35.0% |
| AAAAACAAGAGGATGGAGAG+TGG | - | chr6.1:1536456-1536475 | None:intergenic | 40.0% | |
| AACAAACATCTGCAGAGGAA+GGG | - | chr6.1:1535732-1535751 | None:intergenic | 40.0% | |
| AAGTTTGCCATTCAAGAGCA+GGG | + | chr6.1:1533177-1533196 | MS.gene82876:intron | 40.0% | |
| ACCATGTACAAGATACTACC+CGG | - | chr6.1:1533916-1533935 | None:intergenic | 40.0% | |
| ACCTCTGTAACAGATATGGT+TGG | - | chr6.1:1533666-1533685 | None:intergenic | 40.0% | |
| AGAAGATGGCCGTGATATAA+TGG | - | chr6.1:1533692-1533711 | None:intergenic | 40.0% | |
| AGAGGTGAGCCATTATATCA+CGG | + | chr6.1:1533680-1533699 | MS.gene82876:intron | 40.0% | |
| AGATCAGATCTTCATACCAG+TGG | - | chr6.1:1535999-1536018 | None:intergenic | 40.0% | |
| ATTGCACAGGATGTTGAATG+AGG | + | chr6.1:1535296-1535315 | MS.gene82876:CDS | 40.0% | |
| CAACCACAAAAATAAGACCC+TGG | - | chr6.1:1535236-1535255 | None:intergenic | 40.0% | |
| CAAGTTCCCAACACATAAGT+TGG | - | chr6.1:1533768-1533787 | None:intergenic | 40.0% | |
| CCCTAAGGATCATTGATCTA+CGG | - | chr6.1:1534019-1534038 | None:intergenic | 40.0% | |
| CCGTAGATCAATGATCCTTA+GGG | + | chr6.1:1534016-1534035 | MS.gene82876:intron | 40.0% | |
| CTCCTAGCAACAAATGTTCA+AGG | - | chr6.1:1533966-1533985 | None:intergenic | 40.0% | |
| CTGTAACAGATATGGTTGGA+CGG | - | chr6.1:1533662-1533681 | None:intergenic | 40.0% | |
| CTTGTGTTTATGGGTGGTAA+AGG | + | chr6.1:1533344-1533363 | MS.gene82876:intron | 40.0% | |
| GAGATTCATTGATCCAATGG+TGG | - | chr6.1:1532874-1532893 | None:intergenic | 40.0% | |
| GGTGAGATTCATTGATCCAA+TGG | - | chr6.1:1532877-1532896 | None:intergenic | 40.0% | |
| GTTCCAGAAAAACAAGAGGA+TGG | - | chr6.1:1536463-1536482 | None:intergenic | 40.0% | |
| TAACAAACATCTGCAGAGGA+AGG | - | chr6.1:1535733-1535752 | None:intergenic | 40.0% | |
| TCCAACCATATCTGTTACAG+AGG | + | chr6.1:1533662-1533681 | MS.gene82876:intron | 40.0% | |
| TCCGTAGATCAATGATCCTT+AGG | + | chr6.1:1534015-1534034 | MS.gene82876:intron | 40.0% | |
| TCTGCAGCATTCATTGCATT+TGG | - | chr6.1:1535937-1535956 | None:intergenic | 40.0% | |
| TTACCGCCAACTTATGTGTT+GGG | + | chr6.1:1533759-1533778 | MS.gene82876:intron | 40.0% | |
| TTTACCGCCAACTTATGTGT+TGG | + | chr6.1:1533758-1533777 | MS.gene82876:intron | 40.0% | |
| ! | ATTTTAGACACCAGCTGAAC+CGG | + | chr6.1:1533894-1533913 | MS.gene82876:intron | 40.0% |
| ! | CCCCAACGCAATCTTTAAAA+TGG | - | chr6.1:1534090-1534109 | None:intergenic | 40.0% |
| ! | CTTGACAACACTTTTGTTGG+GGG | + | chr6.1:1535477-1535496 | MS.gene82876:intron | 40.0% |
| ! | GCTTGACAACACTTTTGTTG+GGG | + | chr6.1:1535476-1535495 | MS.gene82876:intron | 40.0% |
| ! | TTGGTTGTTGTTGTTGTGGA+GGG | + | chr6.1:1536157-1536176 | MS.gene82876:intron | 40.0% |
| !!! | TCTCCATCCTCTTGTTTTTC+TGG | + | chr6.1:1536457-1536476 | MS.gene82876:intron | 40.0% |
| AAATAAGACCCTGGGTGTTC+TGG | - | chr6.1:1535227-1535246 | None:intergenic | 45.0% | |
| AACAAAGACACCACCTGACA+CGG | - | chr6.1:1532647-1532666 | None:intergenic | 45.0% | |
| ACCGGGTAGTATCTTGTACA+TGG | + | chr6.1:1533912-1533931 | MS.gene82876:intron | 45.0% | |
| AGAGGGTCTTTATGAGGGTT+TGG | + | chr6.1:1536303-1536322 | MS.gene82876:CDS | 45.0% | |
| AGGGGACCCTCTTGAAAAAT+GGG | - | chr6.1:1533420-1533439 | None:intergenic | 45.0% | |
| CAAGTTTGCCATTCAAGAGC+AGG | + | chr6.1:1533176-1533195 | MS.gene82876:intron | 45.0% | |
| CAGTAGGTTGTTTGCGAAGA+AGG | + | chr6.1:1532425-1532444 | MS.gene82876:CDS | 45.0% | |
| CATTACTTCCAGAACACCCA+GGG | + | chr6.1:1535216-1535235 | MS.gene82876:CDS | 45.0% | |
| GAACTAACCAATGGTAGGGA+TGG | - | chr6.1:1532535-1532554 | None:intergenic | 45.0% | |
| GAGCTAGTAGAGGTCATGTA+TGG | + | chr6.1:1534716-1534735 | MS.gene82876:intron | 45.0% | |
| GCTCACCTCTGTAACAGATA+TGG | - | chr6.1:1533670-1533689 | None:intergenic | 45.0% | |
| GCTGATGTTCTTGTACTCCA+CGG | - | chr6.1:1534616-1534635 | None:intergenic | 45.0% | |
| GGAAGTAATGCCTCCACAAT+GGG | - | chr6.1:1535206-1535225 | None:intergenic | 45.0% | |
| GGTGCAACAATCCCACATTA+TGG | - | chr6.1:1534791-1534810 | None:intergenic | 45.0% | |
| GTCTTTATGAGGGTTTGGAC+TGG | + | chr6.1:1536308-1536327 | MS.gene82876:CDS | 45.0% | |
| GTTACTACCATCCCTACCAT+TGG | + | chr6.1:1532525-1532544 | MS.gene82876:CDS | 45.0% | |
| TAGCAATGATAGAGACCGAG+TGG | + | chr6.1:1535257-1535276 | MS.gene82876:CDS | 45.0% | |
| TCACATAACACACAGCATGC+AGG | - | chr6.1:1534812-1534831 | None:intergenic | 45.0% | |
| TCTGGAGAGGGTCTTTATGA+GGG | + | chr6.1:1536298-1536317 | MS.gene82876:CDS | 45.0% | |
| TGGAAGTAATGCCTCCACAA+TGG | - | chr6.1:1535207-1535226 | None:intergenic | 45.0% | |
| TGTTGGTATGTGAACCTGGA+TGG | + | chr6.1:1535846-1535865 | MS.gene82876:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr6.1:1536139-1536158 | None:intergenic | 45.0% |
| ! | ACTTGTGCAACTTCTGGAGA+GGG | + | chr6.1:1536286-1536305 | MS.gene82876:CDS | 45.0% |
| ! | AGGCTTGGTTGTTGTTGTTG+TGG | + | chr6.1:1536153-1536172 | MS.gene82876:intron | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr6.1:1536140-1536159 | None:intergenic | 45.0% |
| ! | CTTGGTTGTTGTTGTTGTGG+AGG | + | chr6.1:1536156-1536175 | MS.gene82876:intron | 45.0% |
| ! | GTTCCCAACACATAAGTTGG+CGG | - | chr6.1:1533765-1533784 | None:intergenic | 45.0% |
| ! | TTCTGGAGAGGGTCTTTATG+AGG | + | chr6.1:1536297-1536316 | MS.gene82876:CDS | 45.0% |
| ! | TTGGGTCTTGTGTTTATGGG+TGG | + | chr6.1:1533338-1533357 | MS.gene82876:intron | 45.0% |
| ! | TTTGATGGTAGGTCTCGATG+CGG | + | chr6.1:1532458-1532477 | MS.gene82876:CDS | 45.0% |
| ! | TTTTAGACACCAGCTGAACC+GGG | + | chr6.1:1533895-1533914 | MS.gene82876:intron | 45.0% |
| !! | GAGAGTGTCAAAGAGAGTGA+CGG | + | chr6.1:1533983-1534002 | MS.gene82876:intron | 45.0% |
| !! | GCGAGTGGATTGTCGTATAT+AGG | + | chr6.1:1534896-1534915 | MS.gene82876:intron | 45.0% |
| !!! | CACCCAGGGTCTTATTTTTG+TGG | + | chr6.1:1535230-1535249 | MS.gene82876:CDS | 45.0% |
| AAGATACTACCCGGTTCAGC+TGG | - | chr6.1:1533907-1533926 | None:intergenic | 50.0% | |
| AGAACATCAGCTTCACCGTG+TGG | + | chr6.1:1534625-1534644 | MS.gene82876:CDS | 50.0% | |
| AGGCAAGGGATGAATTGCAC+AGG | + | chr6.1:1535283-1535302 | MS.gene82876:CDS | 50.0% | |
| AGTAATGCCTCCACAATGGG+CGG | - | chr6.1:1535203-1535222 | None:intergenic | 50.0% | |
| AGTGTCAAAGAGAGTGACGG+TGG | + | chr6.1:1533986-1534005 | MS.gene82876:intron | 50.0% | |
| CAGATATGGTTGGACGGTGA+TGG | - | chr6.1:1533656-1533675 | None:intergenic | 50.0% | |
| CAGGGGACCCTCTTGAAAAA+TGG | - | chr6.1:1533421-1533440 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr6.1:1536138-1536157 | MS.gene82876:intron | 50.0% | |
| CGTTCACGAAGCTGTTCAGT+AGG | + | chr6.1:1532409-1532428 | MS.gene82876:CDS | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr6.1:1536135-1536154 | None:intergenic | 50.0% | |
| GAACATCAGCTTCACCGTGT+GGG | + | chr6.1:1534626-1534645 | MS.gene82876:CDS | 50.0% | |
| GATCTTCATACCAGTGGCGT+TGG | - | chr6.1:1535993-1536012 | None:intergenic | 50.0% | |
| GCATTACTTCCAGAACACCC+AGG | + | chr6.1:1535215-1535234 | MS.gene82876:CDS | 50.0% | |
| GTTCACACATGCACGTCTCT+TGG | - | chr6.1:1536218-1536237 | None:intergenic | 50.0% | |
| TCATGTCAAGTGTCCGTGTC+AGG | + | chr6.1:1532631-1532650 | MS.gene82876:intron | 50.0% | |
| TGATAGAGACCGAGTGGTTG+AGG | + | chr6.1:1535263-1535282 | MS.gene82876:CDS | 50.0% | |
| TGGTGACAGAGAGCTAGTAG+AGG | + | chr6.1:1534706-1534725 | MS.gene82876:intron | 50.0% | |
| ! | CACTTGTGCAACTTCTGGAG+AGG | + | chr6.1:1536285-1536304 | MS.gene82876:CDS | 50.0% |
| ! | CAGAGCACTTGTGCAACTTC+TGG | + | chr6.1:1536280-1536299 | MS.gene82876:CDS | 50.0% |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr6.1:1536141-1536160 | None:intergenic | 50.0% |
| ! | TCTACTAGCTCTCTGTCACC+AGG | - | chr6.1:1534707-1534726 | None:intergenic | 50.0% |
| AAAAGGGGGAGAGTAGCGAG+TGG | + | chr6.1:1534881-1534900 | MS.gene82876:intron | 55.0% | |
| AGACCGAGTGGTTGAGGCAA+GGG | + | chr6.1:1535269-1535288 | MS.gene82876:CDS | 55.0% | |
| AGCTTCACCGTGTGGGATGT+CGG | + | chr6.1:1534633-1534652 | MS.gene82876:CDS | 55.0% | |
| ATCTGCAGATCCGCCCATTG+TGG | + | chr6.1:1535190-1535209 | MS.gene82876:intron | 55.0% | |
| CAAGAGGGTCCCCTGCATAA+TGG | + | chr6.1:1533426-1533445 | MS.gene82876:intron | 55.0% | |
| CATCCCTTGCCTCAACCACT+CGG | - | chr6.1:1535275-1535294 | None:intergenic | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr6.1:1536133-1536152 | MS.gene82876:intron | 55.0% | |
| TGTCAAGTGTCCGTGTCAGG+TGG | + | chr6.1:1532634-1532653 | MS.gene82876:intron | 55.0% | |
| ! | CTTCATACCAGTGGCGTTGG+CGG | - | chr6.1:1535990-1536009 | None:intergenic | 55.0% |
| ! | TTGCGTTGGGGTGTCATGAC+AGG | + | chr6.1:1534099-1534118 | MS.gene82876:intron | 55.0% |
| ! | TTGTGCCGACCCCACTTAGT+GGG | + | chr6.1:1536127-1536146 | MS.gene82876:intron | 55.0% |
| ! | TTTGTGCCGACCCCACTTAG+TGG | + | chr6.1:1536126-1536145 | MS.gene82876:intron | 55.0% |
| ATGGTAGGTCTCGATGCGGC+TGG | + | chr6.1:1532462-1532481 | MS.gene82876:CDS | 60.0% | |
| ATTCTCTCCGCCAACGCCAC+TGG | + | chr6.1:1535980-1535999 | MS.gene82876:CDS | 60.0% | |
| CTTCACCGTGTGGGATGTCG+GGG | + | chr6.1:1534635-1534654 | MS.gene82876:CDS | 60.0% | |
| GAGACCGAGTGGTTGAGGCA+AGG | + | chr6.1:1535268-1535287 | MS.gene82876:CDS | 60.0% | |
| GCTTCACCGTGTGGGATGTC+GGG | + | chr6.1:1534634-1534653 | MS.gene82876:CDS | 60.0% | |
| TGCAGATCCGCCCATTGTGG+AGG | + | chr6.1:1535193-1535212 | MS.gene82876:intron | 60.0% | |
| TTCACCGTGTGGGATGTCGG+GGG | + | chr6.1:1534636-1534655 | MS.gene82876:CDS | 60.0% | |
| CTGACCCCCGACATCCCACA+CGG | - | chr6.1:1534643-1534662 | None:intergenic | 65.0% | |
| GGATGTCGGGGGTCAGGACA+AGG | + | chr6.1:1534647-1534666 | MS.gene82876:CDS | 65.0% | |
| CGTGTGGGATGTCGGGGGTC+AGG | + | chr6.1:1534641-1534660 | MS.gene82876:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 1532399 | 1536669 | 1532399 | ID=MS.gene82876 |
| chr6.1 | mRNA | 1532399 | 1536669 | 1532399 | ID=MS.gene82876.t1;Parent=MS.gene82876 |
| chr6.1 | exon | 1532399 | 1532546 | 1532399 | ID=MS.gene82876.t1.exon1;Parent=MS.gene82876.t1 |
| chr6.1 | CDS | 1532399 | 1532546 | 1532399 | ID=cds.MS.gene82876.t1;Parent=MS.gene82876.t1 |
| chr6.1 | exon | 1534598 | 1534668 | 1534598 | ID=MS.gene82876.t1.exon2;Parent=MS.gene82876.t1 |
| chr6.1 | CDS | 1534598 | 1534668 | 1534598 | ID=cds.MS.gene82876.t1;Parent=MS.gene82876.t1 |
| chr6.1 | exon | 1535198 | 1535317 | 1535198 | ID=MS.gene82876.t1.exon3;Parent=MS.gene82876.t1 |
| chr6.1 | CDS | 1535198 | 1535317 | 1535198 | ID=cds.MS.gene82876.t1;Parent=MS.gene82876.t1 |
| chr6.1 | exon | 1535883 | 1536001 | 1535883 | ID=MS.gene82876.t1.exon4;Parent=MS.gene82876.t1 |
| chr6.1 | CDS | 1535883 | 1536001 | 1535883 | ID=cds.MS.gene82876.t1;Parent=MS.gene82876.t1 |
| chr6.1 | exon | 1536273 | 1536354 | 1536273 | ID=MS.gene82876.t1.exon5;Parent=MS.gene82876.t1 |
| chr6.1 | CDS | 1536273 | 1536354 | 1536273 | ID=cds.MS.gene82876.t1;Parent=MS.gene82876.t1 |
| chr6.1 | exon | 1536664 | 1536669 | 1536664 | ID=MS.gene82876.t1.exon6;Parent=MS.gene82876.t1 |
| chr6.1 | CDS | 1536664 | 1536669 | 1536664 | ID=cds.MS.gene82876.t1;Parent=MS.gene82876.t1 |
| Gene Sequence |
| Protein sequence |
