AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26119


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26119.t1 MTR_5g078090 100.000 184 0 0 1 184 1 184 1.51e-135 376
MS.gene26119.t1 MTR_5g015370 82.967 182 31 0 1 182 1 182 8.90e-114 321
MS.gene26119.t1 MTR_4g026950 76.970 165 38 0 20 184 1 165 9.43e-95 272
MS.gene26119.t1 MTR_7g109960 34.659 176 112 2 1 176 1 173 3.53e-31 111
MS.gene26119.t1 MTR_1g086480 34.659 176 112 2 1 176 1 173 4.02e-31 111
MS.gene26119.t1 MTR_6g005820 34.091 176 113 2 1 176 1 173 9.12e-31 110
MS.gene26119.t1 MTR_5g034130 34.091 176 113 2 1 176 1 173 1.07e-30 110
MS.gene26119.t1 MTR_5g034125 34.091 176 113 2 1 176 1 173 1.07e-30 110
MS.gene26119.t1 MTR_5g016540 34.337 166 108 1 11 176 9 173 1.44e-30 110
MS.gene26119.t1 MTR_4g128910 34.940 166 107 1 11 176 9 173 3.76e-30 109
MS.gene26119.t1 MTR_2g022200 32.240 183 111 2 2 178 7 182 2.46e-28 105
MS.gene26119.t1 MTR_1g076550 38.028 142 87 1 14 155 12 152 3.18e-28 104
MS.gene26119.t1 MTR_4g077640 34.965 143 92 1 13 155 11 152 3.82e-27 101
MS.gene26119.t1 MTR_5g007810 32.168 143 96 1 13 155 11 152 2.81e-25 97.1
MS.gene26119.t1 MTR_5g007820 35.172 145 91 2 13 155 11 154 7.01e-25 95.9
MS.gene26119.t1 MTR_8g077540 32.919 161 104 3 20 178 17 175 1.73e-23 92.0
MS.gene26119.t1 MTR_4g121860 36.296 135 85 1 17 151 18 151 3.44e-23 91.7
MS.gene26119.t1 MTR_8g077540 32.919 161 104 3 20 178 43 201 6.98e-23 91.3
MS.gene26119.t1 MTR_7g112090 36.184 152 95 2 1 151 1 151 2.05e-22 89.4
MS.gene26119.t1 MTR_2g034640 35.570 149 94 2 1 148 1 148 2.65e-22 89.4
MS.gene26119.t1 MTR_8g077540 36.842 95 59 1 20 114 17 110 1.63e-15 70.1
MS.gene26119.t1 MTR_7g081700 34.375 160 87 6 20 170 9 159 1.42e-14 68.9
MS.gene26119.t1 MTR_8g006970 33.750 160 88 6 20 170 9 159 1.90e-14 68.2
MS.gene26119.t1 MTR_2g005500 30.000 160 94 5 20 170 10 160 6.11e-14 67.4
MS.gene26119.t1 MTR_8g006970 33.750 160 88 6 20 170 23 173 7.11e-14 67.4
MS.gene26119.t1 MTR_5g007840 29.333 150 92 3 13 161 11 147 1.86e-13 66.2
MS.gene26119.t1 MTR_7g103070 32.727 165 89 9 24 176 21 175 8.36e-13 64.3
MS.gene26119.t1 MTR_1g062760 32.099 162 93 7 24 176 19 172 1.97e-12 63.5
MS.gene26119.t1 MTR_1g029450 31.034 174 97 9 16 177 14 176 1.99e-12 63.5
MS.gene26119.t1 MTR_7g100020 31.707 164 93 6 20 173 16 170 3.40e-12 62.8
MS.gene26119.t1 MTR_4g099470 35.965 114 63 4 44 148 9 121 4.65e-12 62.0
MS.gene26119.t1 MTR_1g068730 30.488 164 95 6 20 173 16 170 5.58e-12 62.4
MS.gene26119.t1 MTR_1g115325 30.488 164 95 6 20 173 16 170 6.49e-12 62.0
MS.gene26119.t1 MTR_3g096350 30.460 174 98 9 16 177 9 171 1.02e-11 61.2
MS.gene26119.t1 MTR_3g096350 29.452 146 87 6 16 151 9 148 1.30e-11 60.1
MS.gene26119.t1 MTR_8g093740 30.058 173 100 9 16 177 10 172 2.28e-11 60.5
MS.gene26119.t1 MTR_1g068740 29.878 164 96 6 20 173 16 170 2.38e-11 60.5
MS.gene26119.t1 MTR_2g096550 26.061 165 104 4 16 170 12 168 4.89e-11 59.7
MS.gene26119.t1 MTR_8g103550 28.235 170 114 4 19 184 9 174 4.98e-11 59.3
MS.gene26119.t1 MTR_1g068730 30.128 156 100 5 20 171 16 166 6.86e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26119.t1 AT5G37680 93.989 183 11 0 1 183 1 183 3.22e-130 363
MS.gene26119.t1 AT5G67560 80.978 184 35 0 1 184 1 184 7.66e-113 319
MS.gene26119.t1 AT3G49870 79.891 184 37 0 1 184 1 184 2.22e-110 313
MS.gene26119.t1 AT3G49870 80.000 165 33 0 20 184 1 165 6.10e-98 280
MS.gene26119.t1 AT5G37680 92.647 136 10 0 48 183 1 136 4.90e-94 270
MS.gene26119.t1 AT3G49860 70.659 167 49 0 18 184 10 176 1.78e-85 249
MS.gene26119.t1 AT1G10630 34.659 176 112 2 1 176 1 173 3.82e-31 111
MS.gene26119.t1 AT1G10630 34.659 176 112 2 1 176 1 173 3.82e-31 111
MS.gene26119.t1 AT1G70490 34.659 176 112 2 1 176 1 173 4.74e-31 111
MS.gene26119.t1 AT1G70490 34.659 176 112 2 1 176 1 173 4.74e-31 111
MS.gene26119.t1 AT1G70490 34.659 176 112 2 1 176 1 173 4.74e-31 111
MS.gene26119.t1 AT1G70490 34.659 176 112 2 1 176 1 173 4.74e-31 111
MS.gene26119.t1 AT1G70490 34.659 176 112 2 1 176 1 173 4.74e-31 111
MS.gene26119.t1 AT1G70490 34.659 176 112 2 1 176 1 173 4.74e-31 111
MS.gene26119.t1 AT1G23490 34.659 176 112 2 1 176 1 173 4.74e-31 111
MS.gene26119.t1 AT1G70490 34.659 176 112 2 1 176 1 173 4.74e-31 111
MS.gene26119.t1 AT3G62290 34.659 176 112 2 1 176 1 173 7.06e-31 111
MS.gene26119.t1 AT3G62290 34.659 176 112 2 1 176 1 173 7.06e-31 111
MS.gene26119.t1 AT3G62290 34.659 176 112 2 1 176 1 173 7.06e-31 111
MS.gene26119.t1 AT5G14670 34.969 163 105 1 14 176 12 173 1.13e-30 110
MS.gene26119.t1 AT5G14670 34.969 163 105 1 14 176 12 173 1.13e-30 110
MS.gene26119.t1 AT2G47170 34.969 163 105 1 14 176 12 173 1.17e-30 110
MS.gene26119.t1 AT2G47170 34.969 163 105 1 14 176 12 173 1.17e-30 110
MS.gene26119.t1 AT2G47170 34.969 163 105 1 14 176 12 173 1.17e-30 110
MS.gene26119.t1 AT5G14670 34.969 163 105 1 14 176 12 173 1.35e-30 110
MS.gene26119.t1 AT2G24765 32.530 166 111 1 11 176 9 173 2.35e-28 104
MS.gene26119.t1 AT5G52210 32.967 182 109 2 2 177 7 181 3.78e-28 104
MS.gene26119.t1 AT5G52210 32.967 182 109 2 2 177 7 181 3.78e-28 104
MS.gene26119.t1 AT5G17060 34.266 143 93 1 13 155 11 152 2.94e-27 102
MS.gene26119.t1 AT5G17060 34.266 143 93 1 13 155 11 152 2.94e-27 102
MS.gene26119.t1 AT3G22950 36.620 142 89 1 14 155 12 152 3.24e-27 101
MS.gene26119.t1 AT3G22950 36.620 142 89 1 14 155 12 152 3.24e-27 101
MS.gene26119.t1 AT3G03120 33.566 143 94 1 13 155 11 152 1.63e-26 100
MS.gene26119.t1 AT2G15310 30.921 152 101 2 17 168 15 162 7.61e-25 96.3
MS.gene26119.t1 AT2G24765 35.000 120 77 1 11 130 9 127 4.13e-23 89.7
MS.gene26119.t1 AT3G03120 34.167 120 78 1 13 132 11 129 4.48e-23 89.7
MS.gene26119.t1 AT3G62560 36.296 135 85 1 17 151 18 151 2.63e-22 89.4
MS.gene26119.t1 AT4G02080 35.556 135 86 1 17 151 18 151 4.83e-22 88.6
MS.gene26119.t1 AT1G56330 35.570 149 94 2 1 148 1 148 7.30e-22 88.2
MS.gene26119.t1 AT2G18390 32.919 161 104 3 20 178 17 175 8.13e-22 87.8
MS.gene26119.t1 AT1G09180 36.184 152 95 2 1 151 1 151 6.16e-21 85.9
MS.gene26119.t1 AT1G02440 26.667 180 123 4 11 181 9 188 2.73e-17 76.3
MS.gene26119.t1 AT1G02430 25.989 177 122 4 14 181 12 188 8.21e-16 72.0
MS.gene26119.t1 AT1G02430 26.712 146 102 2 14 154 12 157 9.09e-16 71.2
MS.gene26119.t1 AT1G02130 33.125 160 89 5 20 170 9 159 1.64e-14 68.9
MS.gene26119.t1 AT1G43890 32.927 164 91 9 24 177 18 172 2.47e-14 68.6
MS.gene26119.t1 AT1G43890 32.927 164 91 9 24 177 18 172 2.47e-14 68.6
MS.gene26119.t1 AT1G43890 32.927 164 91 9 24 177 18 172 2.47e-14 68.6
MS.gene26119.t1 AT3G11730 31.250 160 92 5 20 170 9 159 2.87e-14 68.2
MS.gene26119.t1 AT4G17530 32.500 160 90 5 20 170 9 159 1.51e-13 66.2
MS.gene26119.t1 AT5G47200 32.500 160 90 5 20 170 9 159 3.34e-13 65.5
MS.gene26119.t1 AT5G59840 30.233 172 101 6 20 181 16 178 3.12e-12 63.2
MS.gene26119.t1 AT3G46060 29.268 164 97 5 20 173 16 170 3.86e-12 62.8
MS.gene26119.t1 AT3G46060 29.268 164 97 5 20 173 16 170 3.86e-12 62.8
MS.gene26119.t1 AT3G46060 29.268 164 97 5 20 173 16 170 3.86e-12 62.8
MS.gene26119.t1 AT3G53610 29.651 172 102 6 20 181 16 178 4.45e-12 62.8
MS.gene26119.t1 AT3G53610 29.651 172 102 6 20 181 16 178 4.45e-12 62.8
MS.gene26119.t1 AT3G53610 29.651 172 102 6 20 181 16 178 4.45e-12 62.8
MS.gene26119.t1 AT5G03530 31.757 148 84 8 24 163 18 156 6.96e-11 59.3
MS.gene26119.t1 AT5G03530 31.757 148 84 8 24 163 18 156 6.96e-11 59.3

Find 32 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAATTCACTTCGAGTTAT+TGG 0.140016 5.4:-56898104 None:intergenic
GGGATTCCTTTGCTTGTTCT+TGG 0.246105 5.4:+56898155 MS.gene26119:CDS
ACAATAAAGCTTTGGGATCT+TGG 0.278062 5.4:+56894459 MS.gene26119:CDS
TCTGGGATTCTCTTCTCAAT+TGG 0.329088 5.4:+56893753 MS.gene26119:CDS
ATTCTCAACAAATGGGTCTC+TGG 0.360022 5.4:+56893735 None:intergenic
GAAATGTCACAATAAAGCTT+TGG 0.389200 5.4:+56894451 MS.gene26119:CDS
CTGACCAAACCTTCCTTGAA+TGG 0.415538 5.4:+56898134 MS.gene26119:CDS
TTGATCTACCAATGCTTGCT+TGG 0.418148 5.4:-56898207 None:intergenic
AAATGTCACAATAAAGCTTT+GGG 0.418458 5.4:+56894452 MS.gene26119:CDS
CTCTTCTCAATTGGCTCCGC+AGG 0.421148 5.4:+56893762 MS.gene26119:CDS
AATCCCATTCAAGGAAGGTT+TGG 0.436571 5.4:-56898138 None:intergenic
GAGATGGAGCTGTCTCTTGT+AGG 0.450824 5.4:+56894118 MS.gene26119:CDS
TGACCAAACCTTCCTTGAAT+GGG 0.458229 5.4:+56898135 MS.gene26119:CDS
TTCTCAACAAATGGGTCTCT+GGG 0.469026 5.4:+56893736 None:intergenic
CATTCAAGGAAGGTTTGGTC+AGG 0.486407 5.4:-56898133 None:intergenic
CTTGTAGGTCTTCAGAATGC+TGG 0.494726 5.4:+56894133 MS.gene26119:CDS
TTGCTACATGATTTCATGCA+AGG 0.505231 5.4:+56898390 MS.gene26119:CDS
AAGCAAAGGAATCCCATTCA+AGG 0.513568 5.4:-56898147 None:intergenic
AGCTCTTTCCAAGCAAGCAT+TGG 0.513878 5.4:+56898199 MS.gene26119:CDS
ACATAGATGTGGTCATCGAC+TGG 0.530688 5.4:+56898422 MS.gene26119:CDS
TTTGGGATCTTGGTGGTCAA+CGG 0.548867 5.4:+56894469 MS.gene26119:CDS
ATAAAGCTTTGGGATCTTGG+TGG 0.559424 5.4:+56894462 MS.gene26119:CDS
AATATGCGAAAAGTGACAAA+GGG 0.561008 5.4:+56894429 MS.gene26119:CDS
TTGTTTCCAAGAACAAGCAA+AGG 0.570676 5.4:-56898161 None:intergenic
ATGTGGGAGCGCTACTGTCG+CGG 0.588919 5.4:+56894504 MS.gene26119:CDS
AAAGGAATCCCATTCAAGGA+AGG 0.597544 5.4:-56898143 None:intergenic
CAATATGCGAAAAGTGACAA+AGG 0.599692 5.4:+56894428 MS.gene26119:CDS
GGGATCTTGGTGGTCAACGG+AGG 0.604641 5.4:+56894472 MS.gene26119:CDS
ACGGAGGTTTCGAACAATGT+GGG 0.644507 5.4:+56894488 MS.gene26119:CDS
GGATTCTGTAAACATAGATG+TGG 0.658596 5.4:+56898411 MS.gene26119:CDS
AACGGAGGTTTCGAACAATG+TGG 0.660702 5.4:+56894487 MS.gene26119:CDS
TGAGTCAATTAAAGACAGAG+AGG 0.706022 5.4:+56898363 MS.gene26119:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAAATAAGAATAAAGAA+AGG - chr5.4:56893801-56893820 None:intergenic 15.0%
!! AAATTCATACAAAATTACTT+GGG - chr5.4:56894041-56894060 None:intergenic 15.0%
!! TAACATAGAATTTAAATGTT+GGG + chr5.4:56894975-56894994 MS.gene26119:intron 15.0%
!!! ATGCTCTTTTTTTTTTTTAA+CGG + chr5.4:56897210-56897229 MS.gene26119:intron 15.0%
!!! GTATATAGTTAATGTTTTTT+GGG + chr5.4:56894646-56894665 MS.gene26119:intron 15.0%
!!! TAATTTTAACTCATTATTAC+TGG + chr5.4:56894210-56894229 MS.gene26119:intron 15.0%
!!! TCTCTTTATTTGTATATAAA+GGG + chr5.4:56895475-56895494 MS.gene26119:intron 15.0%
!!! TGTATATAGTTAATGTTTTT+TGG + chr5.4:56894645-56894664 MS.gene26119:intron 15.0%
!!! TTCTCTTTATTTGTATATAA+AGG + chr5.4:56895474-56895493 MS.gene26119:intron 15.0%
!! AATGGTGATTAAAGAAAATA+GGG - chr5.4:56895653-56895672 None:intergenic 20.0%
!! ACAAGTTAAGAATCTAAAAA+TGG + chr5.4:56894694-56894713 MS.gene26119:intron 20.0%
!! ACATTTGAATTCAGAATTTA+AGG + chr5.4:56894350-56894369 MS.gene26119:intron 20.0%
!! ATCATATGATATATAGTAAC+TGG - chr5.4:56893870-56893889 None:intergenic 20.0%
!! CAAATTCATACAAAATTACT+TGG - chr5.4:56894042-56894061 None:intergenic 20.0%
!! GATTAGGATTTAATAATAAG+AGG + chr5.4:56895426-56895445 MS.gene26119:intron 20.0%
!! GTAACATAGAATTTAAATGT+TGG + chr5.4:56894974-56894993 MS.gene26119:intron 20.0%
!! GTTCAAACATAGAAATATAA+AGG + chr5.4:56897680-56897699 MS.gene26119:intron 20.0%
!! TAAAGATAAAGTTACCTTAT+TGG - chr5.4:56896897-56896916 None:intergenic 20.0%
!! TAATTAGTAAGTAGTTAGTT+AGG + chr5.4:56895371-56895390 MS.gene26119:intron 20.0%
!! TATAGATGATTATTAGTGTT+AGG + chr5.4:56895323-56895342 MS.gene26119:intron 20.0%
!! TTAAGTAGATTATTAGTAAG+TGG + chr5.4:56895395-56895414 MS.gene26119:intron 20.0%
!! TTACTCTAATACAAATTTAG+AGG - chr5.4:56893955-56893974 None:intergenic 20.0%
!! TTATTAAATCCTAATCCTAA+CGG - chr5.4:56895422-56895441 None:intergenic 20.0%
!! TTTATTATAAACCCTATAGT+TGG + chr5.4:56895249-56895268 MS.gene26119:intron 20.0%
!! TTTATTATCAAGATGTTGAT+TGG + chr5.4:56897635-56897654 MS.gene26119:intron 20.0%
!!! ACAATAATGATGATGATTTT+CGG - chr5.4:56898258-56898277 None:intergenic 20.0%
!!! AGACTTTTATTGAACAATTT+TGG + chr5.4:56897710-56897729 MS.gene26119:intron 20.0%
!!! AGTTATGTTTTTATTACGTA+AGG - chr5.4:56897888-56897907 None:intergenic 20.0%
!!! ATCTTGATAATAAAAAACAG+TGG - chr5.4:56897629-56897648 None:intergenic 20.0%
!!! CAAAAATAGAAACATTTTGT+TGG - chr5.4:56894788-56894807 None:intergenic 20.0%
!!! CAACAAAATGTTTCTATTTT+TGG + chr5.4:56894786-56894805 MS.gene26119:intron 20.0%
!!! CTCTTTATTTGTATATAAAG+GGG + chr5.4:56895476-56895495 MS.gene26119:intron 20.0%
!!! CTTATTTTTTAAACAAGAGA+TGG + chr5.4:56894102-56894121 MS.gene26119:CDS 20.0%
!!! TAAAAAAAAAAAAGAGCATC+TGG - chr5.4:56897209-56897228 None:intergenic 20.0%
!!! TTTTATGAATAAACAGAGAA+AGG - chr5.4:56897853-56897872 None:intergenic 20.0%
! AAAAGCTAACAATTCTTCAA+AGG - chr5.4:56896487-56896506 None:intergenic 25.0%
! AAAATTGCGAATAACCAAAT+TGG - chr5.4:56893982-56894001 None:intergenic 25.0%
! AAAGCTAACAATTCTTCAAA+GGG - chr5.4:56896486-56896505 None:intergenic 25.0%
! AAAGTAAAGATACTTACAGT+TGG - chr5.4:56894324-56894343 None:intergenic 25.0%
! AAATGTCACAATAAAGCTTT+GGG + chr5.4:56894452-56894471 MS.gene26119:CDS 25.0%
! AACCTTCAAAAAAATGACAA+AGG - chr5.4:56894609-56894628 None:intergenic 25.0%
! AAGAATAAAGAAAGGAAAGT+GGG - chr5.4:56893793-56893812 None:intergenic 25.0%
! AATATAATTGGGTCAAAACA+TGG + chr5.4:56896805-56896824 MS.gene26119:intron 25.0%
! AGTTCATCCTAAAATGATTT+CGG + chr5.4:56896776-56896795 MS.gene26119:intron 25.0%
! ATATAATTGGGTCAAAACAT+GGG + chr5.4:56896806-56896825 MS.gene26119:intron 25.0%
! ATGATATATAGTAACTGGAA+TGG - chr5.4:56893865-56893884 None:intergenic 25.0%
! ATTAGAGTAAAGATCCAATT+TGG + chr5.4:56893965-56893984 MS.gene26119:intron 25.0%
! ATTCTAGTATTTAACCCTAA+TGG - chr5.4:56895453-56895472 None:intergenic 25.0%
! CAATGGTGATTAAAGAAAAT+AGG - chr5.4:56895654-56895673 None:intergenic 25.0%
! GGAGAAATAAGAAAATACTA+AGG + chr5.4:56894943-56894962 MS.gene26119:intron 25.0%
! TAAGAATAAAGAAAGGAAAG+TGG - chr5.4:56893794-56893813 None:intergenic 25.0%
! TAAGGTAACTTTATCTTTAG+TGG + chr5.4:56896898-56896917 MS.gene26119:intron 25.0%
! TACTTGTCATTCTTAGAATT+TGG - chr5.4:56896017-56896036 None:intergenic 25.0%
! TATTAAATCCTAATCCTAAC+GGG - chr5.4:56895421-56895440 None:intergenic 25.0%
! TCAACAGTTTGTCTATATAT+TGG - chr5.4:56897030-56897049 None:intergenic 25.0%
! TGAAGTAGACTCTTATAAAA+CGG + chr5.4:56896436-56896455 MS.gene26119:intron 25.0%
! TGGTTATAAAAACAAGTATC+AGG - chr5.4:56897609-56897628 None:intergenic 25.0%
! TTACAGAATTATAAGAGTCT+TGG + chr5.4:56897775-56897794 MS.gene26119:intron 25.0%
! TTATCAGAGATAAATACAAG+AGG - chr5.4:56897932-56897951 None:intergenic 25.0%
! TTCTAGTATTTAACCCTAAT+GGG - chr5.4:56895452-56895471 None:intergenic 25.0%
!! AAATAGGGTGCTTTATTAAT+AGG - chr5.4:56895638-56895657 None:intergenic 25.0%
!! AAATTCTAAGAATGACAAGT+AGG + chr5.4:56896016-56896035 MS.gene26119:intron 25.0%
!! AATTCTAAGAATGACAAGTA+GGG + chr5.4:56896017-56896036 MS.gene26119:intron 25.0%
!! ACCTATTCTAGATCTAAAAT+TGG + chr5.4:56895863-56895882 MS.gene26119:intron 25.0%
!! TTCGGTTAGTCAATATAATT+GGG + chr5.4:56896794-56896813 MS.gene26119:intron 25.0%
!! TTTAATTCACTTCGAGTTAT+TGG - chr5.4:56898107-56898126 None:intergenic 25.0%
!! TTTCGGTTAGTCAATATAAT+TGG + chr5.4:56896793-56896812 MS.gene26119:intron 25.0%
!!! AGTTATTTTATGGTTATGGT+AGG - chr5.4:56897807-56897826 None:intergenic 25.0%
!!! GAATTTTGCTATTGAACTTT+AGG + chr5.4:56894398-56894417 MS.gene26119:intron 25.0%
!!! GCAATATTTCAAGTTAATGT+GGG - chr5.4:56895741-56895760 None:intergenic 25.0%
!!! GGATAGTTATTTTATGGTTA+TGG - chr5.4:56897811-56897830 None:intergenic 25.0%
!!! GTTAATATGGTGTTGTTATA+AGG + chr5.4:56895073-56895092 MS.gene26119:intron 25.0%
!!! TCCAATTTTAGATCTAGAAT+AGG - chr5.4:56895867-56895886 None:intergenic 25.0%
!!! TTCCTTTGTCATTTTTTTGA+AGG + chr5.4:56894604-56894623 MS.gene26119:intron 25.0%
AAATTGAGGAACAATTAGTG+TGG + chr5.4:56896868-56896887 MS.gene26119:intron 30.0%
AATAGGTTGTGATACCATAT+TGG - chr5.4:56895850-56895869 None:intergenic 30.0%
AATATGCGAAAAGTGACAAA+GGG + chr5.4:56894429-56894448 MS.gene26119:CDS 30.0%
AGACTCTTATAAAACGGTAT+GGG + chr5.4:56896442-56896461 MS.gene26119:intron 30.0%
AGTTGTGTTTGCTTTAATCA+TGG + chr5.4:56898035-56898054 MS.gene26119:intron 30.0%
ATATCAAGAAAATCACAAGG+CGG + chr5.4:56896164-56896183 MS.gene26119:intron 30.0%
CCAATATCAAGAAAATCACA+AGG + chr5.4:56896161-56896180 MS.gene26119:intron 30.0%
CCTCATTCTTTCAAACATTA+GGG + chr5.4:56897175-56897194 MS.gene26119:intron 30.0%
CTACCAATGAATTAACAGTA+AGG - chr5.4:56895691-56895710 None:intergenic 30.0%
CTACCTTACTGTTAATTCAT+TGG + chr5.4:56895685-56895704 MS.gene26119:intron 30.0%
CTTACTGTTAATTCATTGGT+AGG + chr5.4:56895689-56895708 MS.gene26119:intron 30.0%
GAAATACTCACGTATTGTTA+AGG - chr5.4:56896577-56896596 None:intergenic 30.0%
GAAATGTCACAATAAAGCTT+TGG + chr5.4:56894451-56894470 MS.gene26119:CDS 30.0%
GTATATAAAGGGGAATTCTT+AGG + chr5.4:56895486-56895505 MS.gene26119:intron 30.0%
TAAAAACAAGTATCAGGAAG+TGG - chr5.4:56897603-56897622 None:intergenic 30.0%
TAATAATAAGAGGCCCATTA+GGG + chr5.4:56895436-56895455 MS.gene26119:intron 30.0%
TAATTAGGAGTTGCATTTCT+TGG + chr5.4:56898003-56898022 MS.gene26119:intron 30.0%
TAGACTCTTATAAAACGGTA+TGG + chr5.4:56896441-56896460 MS.gene26119:intron 30.0%
TCATTCTTAGAATTTGGACT+AGG - chr5.4:56896011-56896030 None:intergenic 30.0%
TCCTCATTCTTTCAAACATT+AGG + chr5.4:56897174-56897193 MS.gene26119:intron 30.0%
TGAATAAACAGAGAAAGGAA+AGG - chr5.4:56897848-56897867 None:intergenic 30.0%
TTAACACATGCTTCATATTG+TGG + chr5.4:56897958-56897977 MS.gene26119:intron 30.0%
TTAATAATAAGAGGCCCATT+AGG + chr5.4:56895435-56895454 MS.gene26119:intron 30.0%
TTAGAGGTTTAACAACATCA+AGG - chr5.4:56893939-56893958 None:intergenic 30.0%
! ACGTATTGTTAAGGTAGTTT+TGG - chr5.4:56896568-56896587 None:intergenic 30.0%
! CCTTGTGATTTTCTTGATAT+TGG - chr5.4:56896164-56896183 None:intergenic 30.0%
! CGTGATAATTGTTTTCTCAT+AGG + chr5.4:56895145-56895164 MS.gene26119:intron 30.0%
! GATTGTGAATTTGTGTGTTT+TGG + chr5.4:56894076-56894095 MS.gene26119:intron 30.0%
! GTTTGTTCTTTCGAGTAATT+AGG + chr5.4:56897988-56898007 MS.gene26119:intron 30.0%
! TGACTAACCGAAATCATTTT+AGG - chr5.4:56896786-56896805 None:intergenic 30.0%
! TTGCTATTGAACTTTAGGTT+GGG + chr5.4:56894403-56894422 MS.gene26119:intron 30.0%
!! AATATGGTGTTGTTATAAGG+AGG + chr5.4:56895076-56895095 MS.gene26119:intron 30.0%
!! ATTGGTTTGATCTTCTCAAA+GGG + chr5.4:56896385-56896404 MS.gene26119:intron 30.0%
!! GGCAATATTTCAAGTTAATG+TGG - chr5.4:56895742-56895761 None:intergenic 30.0%
!! GTGATGGGATAGTTATTTTA+TGG - chr5.4:56897817-56897836 None:intergenic 30.0%
!! GTTTCACTTTTCAATGAATG+AGG + chr5.4:56897132-56897151 MS.gene26119:intron 30.0%
!! TAGTTGTTTTATGTGCAGTA+GGG + chr5.4:56895013-56895032 MS.gene26119:intron 30.0%
!! TGAACCTTCCATTTTAAAGA+TGG - chr5.4:56896615-56896634 None:intergenic 30.0%
!! TGATTTTTGTTTGACAGACA+GGG + chr5.4:56894277-56894296 MS.gene26119:intron 30.0%
!! TTGATTTTTGTTTGACAGAC+AGG + chr5.4:56894276-56894295 MS.gene26119:intron 30.0%
!! TTTGCTATTGAACTTTAGGT+TGG + chr5.4:56894402-56894421 MS.gene26119:intron 30.0%
!!! CATTTTTTTGAAGGTTGTGT+TGG + chr5.4:56894613-56894632 MS.gene26119:intron 30.0%
!!! TTGAACAATTTTGGTTACTG+AGG + chr5.4:56897719-56897738 MS.gene26119:intron 30.0%
AAAAGGGCTACGAAGTAAAT+TGG - chr5.4:56895763-56895782 None:intergenic 35.0%
AAAATCACAAGGCGGTTATT+GGG + chr5.4:56896172-56896191 MS.gene26119:intron 35.0%
AAACACAACTGAAGAAGTCA+AGG + chr5.4:56896323-56896342 MS.gene26119:intron 35.0%
AACACATATCATGGATCACT+AGG + chr5.4:56896277-56896296 MS.gene26119:intron 35.0%
AATGTGGGAACCTAATTGAT+AGG - chr5.4:56895726-56895745 None:intergenic 35.0%
AATTAACAGTAAGGTAGCCA+AGG - chr5.4:56895682-56895701 None:intergenic 35.0%
AATTAGCTGGCCATATATGA+GGG + chr5.4:56896350-56896369 MS.gene26119:intron 35.0%
AATTAGTGTGGCTTCCAATA+AGG + chr5.4:56896880-56896899 MS.gene26119:intron 35.0%
AATTCATTGGTAGGATCCTT+TGG + chr5.4:56895698-56895717 MS.gene26119:intron 35.0%
ACAAAAGTTGGACCAACTAT+AGG - chr5.4:56895264-56895283 None:intergenic 35.0%
ACCTAATTGATAGGAACCAA+AGG - chr5.4:56895717-56895736 None:intergenic 35.0%
ACTCTTATAAAACGGTATGG+GGG + chr5.4:56896444-56896463 MS.gene26119:intron 35.0%
ACTGTTGATGTTGTTAGTGT+TGG + chr5.4:56897042-56897061 MS.gene26119:intron 35.0%
AGTGTTAACTTATGCCCTTA+GGG + chr5.4:56894670-56894689 MS.gene26119:intron 35.0%
ATACGTGAGTATTTCATGAG+TGG + chr5.4:56896582-56896601 MS.gene26119:intron 35.0%
ATCTGTTGGAAGAATTCAAG+AGG + chr5.4:56896043-56896062 MS.gene26119:intron 35.0%
ATGAAAGAACCGAAACGTTA+AGG + chr5.4:56897429-56897448 MS.gene26119:intron 35.0%
ATGTCCAATACTAGATGTGA+GGG + chr5.4:56895912-56895931 MS.gene26119:intron 35.0%
ATTAGAATGGCTTAGATGGA+AGG + chr5.4:56896666-56896685 MS.gene26119:intron 35.0%
CAAAAGTTGGACCAACTATA+GGG - chr5.4:56895263-56895282 None:intergenic 35.0%
CAATATGCGAAAAGTGACAA+AGG + chr5.4:56894428-56894447 MS.gene26119:CDS 35.0%
CAGAAAACAAGCCTAAAATG+TGG + chr5.4:56894907-56894926 MS.gene26119:intron 35.0%
CCATATTAACTCGATCATTG+CGG - chr5.4:56895063-56895082 None:intergenic 35.0%
CCCTAATGTTTGAAAGAATG+AGG - chr5.4:56897178-56897197 None:intergenic 35.0%
CGTTAACAAGGAAATGAGAA+GGG + chr5.4:56896921-56896940 MS.gene26119:intron 35.0%
CTAACTGTTCTGTCAAACAT+AGG - chr5.4:56896233-56896252 None:intergenic 35.0%
CTTGCTAGAACTTGAATCTA+TGG - chr5.4:56896834-56896853 None:intergenic 35.0%
CTTTGATTGTTCGATTTCAG+AGG + chr5.4:56898337-56898356 MS.gene26119:intron 35.0%
GACTCTTATAAAACGGTATG+GGG + chr5.4:56896443-56896462 MS.gene26119:intron 35.0%
GAGATTCATCCTTTGTTGAT+AGG + chr5.4:56896129-56896148 MS.gene26119:intron 35.0%
GGATTCTGTAAACATAGATG+TGG + chr5.4:56898411-56898430 MS.gene26119:CDS 35.0%
GGTACTATTGAGCAATATAG+AGG + chr5.4:56896516-56896535 MS.gene26119:intron 35.0%
GGTTCTTTCATAGTCTGTTA+TGG - chr5.4:56897420-56897439 None:intergenic 35.0%
GTGATACCATATTGGAGTAT+GGG - chr5.4:56895842-56895861 None:intergenic 35.0%
GTTAACAAGGAAATGAGAAG+GGG + chr5.4:56896922-56896941 MS.gene26119:intron 35.0%
GTTGATTAGAATGGCTTAGA+TGG + chr5.4:56896662-56896681 MS.gene26119:intron 35.0%
TACACATACGTAGAGCTAAA+GGG + chr5.4:56896966-56896985 MS.gene26119:intron 35.0%
TACTTCAACTTATCCCAAGT+CGG - chr5.4:56896423-56896442 None:intergenic 35.0%
TAGAGTGCAGTTGATTAGAA+TGG + chr5.4:56896653-56896672 MS.gene26119:intron 35.0%
TAGTGTTAACTTATGCCCTT+AGG + chr5.4:56894669-56894688 MS.gene26119:intron 35.0%
TATCTTTAGTGGCGTTAACA+AGG + chr5.4:56896909-56896928 MS.gene26119:intron 35.0%
TATGTCCAATACTAGATGTG+AGG + chr5.4:56895911-56895930 MS.gene26119:intron 35.0%
TATTAGTGTTAGGACCTAGT+AGG + chr5.4:56895333-56895352 MS.gene26119:intron 35.0%
TCTGTTGGAAGAATTCAAGA+GGG + chr5.4:56896044-56896063 MS.gene26119:intron 35.0%
TGAGTCAATTAAAGACAGAG+AGG + chr5.4:56898363-56898382 MS.gene26119:CDS 35.0%
TGTGATACCATATTGGAGTA+TGG - chr5.4:56895843-56895862 None:intergenic 35.0%
TTAACAAGGAAATGAGAAGG+GGG + chr5.4:56896923-56896942 MS.gene26119:intron 35.0%
TTAATCATGGATGCAATTGC+AGG + chr5.4:56898048-56898067 MS.gene26119:intron 35.0%
TTACACATACGTAGAGCTAA+AGG + chr5.4:56896965-56896984 MS.gene26119:intron 35.0%
TTCTGTTAGAACCCAAAGTT+AGG + chr5.4:56894872-56894891 MS.gene26119:intron 35.0%
TTGATGAGACCTATCAACAA+AGG - chr5.4:56896141-56896160 None:intergenic 35.0%
TTGCTACATGATTTCATGCA+AGG + chr5.4:56898390-56898409 MS.gene26119:CDS 35.0%
TTGTTTCCAAGAACAAGCAA+AGG - chr5.4:56898164-56898183 None:intergenic 35.0%
! ACAGATTGAGTTTTCTGTTC+AGG + chr5.4:56895522-56895541 MS.gene26119:intron 35.0%
! AGGAGAGTACAGAAATCAAT+TGG - chr5.4:56897912-56897931 None:intergenic 35.0%
! ATCAACTGCACTCTATTTTG+AGG - chr5.4:56896648-56896667 None:intergenic 35.0%
! CACATCTAGTATTGGACATA+TGG - chr5.4:56895911-56895930 None:intergenic 35.0%
! CAGATTGAGTTTTCTGTTCA+GGG + chr5.4:56895523-56895542 MS.gene26119:intron 35.0%
! CTGTAACTTTGCTCCATTTT+CGG - chr5.4:56897278-56897297 None:intergenic 35.0%
! CTTTTCAATGAATGAGGAAG+AGG + chr5.4:56897138-56897157 MS.gene26119:intron 35.0%
! GTCTTCAGCCATCTTTAAAA+TGG + chr5.4:56896604-56896623 MS.gene26119:intron 35.0%
! TAATCACCATTGTTTCTCCT+TGG + chr5.4:56895662-56895681 MS.gene26119:intron 35.0%
! TCCTTTGGTTCCTATCAATT+AGG + chr5.4:56895713-56895732 MS.gene26119:intron 35.0%
! TGTAACTTTGCTCCATTTTC+GGG - chr5.4:56897277-56897296 None:intergenic 35.0%
! TTGGATTGGATCACAAAAGT+TGG - chr5.4:56895276-56895295 None:intergenic 35.0%
! TTTAGGATGAACTGAACCTT+AGG - chr5.4:56896769-56896788 None:intergenic 35.0%
! TTTTGTGATCCAATCCAAGA+GGG + chr5.4:56895278-56895297 MS.gene26119:intron 35.0%
!! ACAATAAAGCTTTGGGATCT+TGG + chr5.4:56894459-56894478 MS.gene26119:CDS 35.0%
!! ATTCTTAACTTGTGCCCTAA+GGG - chr5.4:56894687-56894706 None:intergenic 35.0%
!! ATTTTTGTTTGACAGACAGG+GGG + chr5.4:56894279-56894298 MS.gene26119:intron 35.0%
!! CATTGGTTTGATCTTCTCAA+AGG + chr5.4:56896384-56896403 MS.gene26119:intron 35.0%
!! CTAGTTGTTTTATGTGCAGT+AGG + chr5.4:56895012-56895031 MS.gene26119:intron 35.0%
!! CTCTGAAATCGAACAATCAA+AGG - chr5.4:56898339-56898358 None:intergenic 35.0%
!! GATTTTTGTTTGACAGACAG+GGG + chr5.4:56894278-56894297 MS.gene26119:intron 35.0%
!! TCAGCCATCTTTAAAATGGA+AGG + chr5.4:56896608-56896627 MS.gene26119:intron 35.0%
!! TCCACTGGTTTCAAGAATTT+GGG + chr5.4:56897548-56897567 MS.gene26119:intron 35.0%
!! TTCCACTGGTTTCAAGAATT+TGG + chr5.4:56897547-56897566 MS.gene26119:intron 35.0%
!! TTTCTTAACTTGTGCCTTGA+GGG + chr5.4:56894809-56894828 MS.gene26119:intron 35.0%
!!! AATGTGACTGAACTAGCTTT+TGG + chr5.4:56895973-56895992 MS.gene26119:intron 35.0%
!!! ATGTGACTGAACTAGCTTTT+GGG + chr5.4:56895974-56895993 MS.gene26119:intron 35.0%
!!! TTAAGGTAGTTTTGGTACCT+TGG - chr5.4:56896560-56896579 None:intergenic 35.0%
!!! TTGTTAGCTTTTCGACTGTT+CGG + chr5.4:56896495-56896514 MS.gene26119:intron 35.0%
AAAGGAATCCCATTCAAGGA+AGG - chr5.4:56898146-56898165 None:intergenic 40.0%
AAGCAAAGGAATCCCATTCA+AGG - chr5.4:56898150-56898169 None:intergenic 40.0%
AAGTCAAGGTGAGAATTAGC+TGG + chr5.4:56896337-56896356 MS.gene26119:intron 40.0%
AAGTTCATCTACCATATCCG+TGG + chr5.4:56895195-56895214 MS.gene26119:intron 40.0%
AATCCCATAAGCTACCTCAA+GGG - chr5.4:56895806-56895825 None:intergenic 40.0%
AATCCCATTCAAGGAAGGTT+TGG - chr5.4:56898141-56898160 None:intergenic 40.0%
ACACGTGATCATGCAAATTG+AGG + chr5.4:56896854-56896873 MS.gene26119:intron 40.0%
ACAGAGAAAGGAAAGGAGAA+AGG - chr5.4:56897841-56897860 None:intergenic 40.0%
ACCCAAATTCTTGAAACCAG+TGG - chr5.4:56897552-56897571 None:intergenic 40.0%
AGAATTCAAGAGGGCAAACA+TGG + chr5.4:56896053-56896072 MS.gene26119:intron 40.0%
AGACAAAGGCCTTAACGTTT+CGG - chr5.4:56897441-56897460 None:intergenic 40.0%
AGAGAAAGGAAAGGAGAAAG+GGG - chr5.4:56897839-56897858 None:intergenic 40.0%
AGATGGTTATTGGGAAACAG+TGG + chr5.4:56896710-56896729 MS.gene26119:intron 40.0%
AGCCTCAAGAGATGGTTATT+GGG + chr5.4:56896701-56896720 MS.gene26119:intron 40.0%
AGTCCAAAAAACTCGTCTGA+CGG + chr5.4:56896251-56896270 MS.gene26119:intron 40.0%
ATGATCCAGGACCTAACTTT+GGG - chr5.4:56894886-56894905 None:intergenic 40.0%
ATTAGCTGGCCATATATGAG+GGG + chr5.4:56896351-56896370 MS.gene26119:intron 40.0%
ATTCTTGAAACCAGTGGAAG+TGG - chr5.4:56897546-56897565 None:intergenic 40.0%
CAGAGAAAGGAAAGGAGAAA+GGG - chr5.4:56897840-56897859 None:intergenic 40.0%
CCGCAATGATCGAGTTAATA+TGG + chr5.4:56895060-56895079 MS.gene26119:intron 40.0%
GAAAATCACAAGGCGGTTAT+TGG + chr5.4:56896171-56896190 MS.gene26119:intron 40.0%
GAATTAGCTGGCCATATATG+AGG + chr5.4:56896349-56896368 MS.gene26119:intron 40.0%
GATGAACTGAACCTTAGGTT+AGG - chr5.4:56896764-56896783 None:intergenic 40.0%
GCATATGTGTCACAATACTG+AGG + chr5.4:56896079-56896098 MS.gene26119:intron 40.0%
GCGTTAACAAGGAAATGAGA+AGG + chr5.4:56896920-56896939 MS.gene26119:intron 40.0%
GTGGCTATGGTTTCATAGTT+TGG + chr5.4:56894250-56894269 MS.gene26119:intron 40.0%
GTGGTGAAAAATTCCATTCG+CGG + chr5.4:56897002-56897021 MS.gene26119:intron 40.0%
TAATCCCATAAGCTACCTCA+AGG - chr5.4:56895807-56895826 None:intergenic 40.0%
TATAAAACGGTATGGGGGAT+GGG + chr5.4:56896449-56896468 MS.gene26119:intron 40.0%
TCACAATACTGAGGATTGCA+GGG + chr5.4:56896088-56896107 MS.gene26119:intron 40.0%
TGACCAAACCTTCCTTGAAT+GGG + chr5.4:56898135-56898154 MS.gene26119:CDS 40.0%
TGACGGAACAACACATATCA+TGG + chr5.4:56896268-56896287 MS.gene26119:intron 40.0%
TGTCCAATACTAGATGTGAG+GGG + chr5.4:56895913-56895932 MS.gene26119:intron 40.0%
TTAAAACACCCTCTCCTACT+AGG - chr5.4:56895350-56895369 None:intergenic 40.0%
TTATAAAACGGTATGGGGGA+TGG + chr5.4:56896448-56896467 MS.gene26119:intron 40.0%
TTATGGCTCTTGTCTTGCTT+TGG - chr5.4:56897403-56897422 None:intergenic 40.0%
TTATTAGTAAGTGGCCCGTT+AGG + chr5.4:56895404-56895423 MS.gene26119:intron 40.0%
TTCAAGAATTTGGGTACCTC+AGG + chr5.4:56897557-56897576 MS.gene26119:intron 40.0%
TTCCCAATAACCATCTCTTG+AGG - chr5.4:56896706-56896725 None:intergenic 40.0%
TTGATCTACCAATGCTTGCT+TGG - chr5.4:56898210-56898229 None:intergenic 40.0%
TTTGTGATCCAATCCAAGAG+GGG + chr5.4:56895279-56895298 MS.gene26119:intron 40.0%
! AAATGTGGCTTGTGTACTCT+AGG + chr5.4:56894922-56894941 MS.gene26119:intron 40.0%
! AAGATTGGCCAAGGCTTAAA+AGG - chr5.4:56895780-56895799 None:intergenic 40.0%
! ACAAAGAGTACACCAATCCA+CGG - chr5.4:56895215-56895234 None:intergenic 40.0%
! AGATTGGCCAAGGCTTAAAA+GGG - chr5.4:56895779-56895798 None:intergenic 40.0%
! ATCAAGATGTTGATTGGTCG+TGG + chr5.4:56897641-56897660 MS.gene26119:intron 40.0%
! CTTTTGTGATCCAATCCAAG+AGG + chr5.4:56895277-56895296 MS.gene26119:intron 40.0%
! GAGTACACAAGCCACATTTT+AGG - chr5.4:56894921-56894940 None:intergenic 40.0%
! GGAGGACTTGTGTAAGTTTT+TGG + chr5.4:56895094-56895113 MS.gene26119:intron 40.0%
! GTTGATGTTGTTAGTGTTGG+AGG + chr5.4:56897045-56897064 MS.gene26119:intron 40.0%
! GTTTTCTCATAGGAGAGTCT+CGG + chr5.4:56895155-56895174 MS.gene26119:intron 40.0%
! TAAGTTTTCGGCCTAACCTA+AGG + chr5.4:56896750-56896769 MS.gene26119:intron 40.0%
! TCTGGGATTCTCTTCTCAAT+TGG + chr5.4:56893753-56893772 MS.gene26119:CDS 40.0%
! TTGTCTTGCTTTGGTGACTT+TGG - chr5.4:56897394-56897413 None:intergenic 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG - chr5.4:56894826-56894845 None:intergenic 40.0%
!! ATAAAGCTTTGGGATCTTGG+TGG + chr5.4:56894462-56894481 MS.gene26119:CDS 40.0%
!! ATCCCAAGTCGGTTTTTCTT+CGG - chr5.4:56896412-56896431 None:intergenic 40.0%
!! GATTCTTAACTTGTGCCCTA+AGG - chr5.4:56894688-56894707 None:intergenic 40.0%
!! GTTTCTTAACTTGTGCCTTG+AGG + chr5.4:56894808-56894827 MS.gene26119:intron 40.0%
!!! GACTTTGGTCTTGGTGTTTT+GGG - chr5.4:56897379-56897398 None:intergenic 40.0%
!!! GAGGCAGCTTGTTAAGTTTT+CGG + chr5.4:56896738-56896757 MS.gene26119:intron 40.0%
!!! GGTTTTGTTGCTTGTTCTTG+TGG + chr5.4:56894231-56894250 MS.gene26119:intron 40.0%
!!! TGACTTTGGTCTTGGTGTTT+TGG - chr5.4:56897380-56897399 None:intergenic 40.0%
!!! TGTGACTGAACTAGCTTTTG+GGG + chr5.4:56895975-56895994 MS.gene26119:intron 40.0%
!!! TTTTGTGTTGATTCCCTCCA+AGG + chr5.4:56896540-56896559 MS.gene26119:intron 40.0%
AAAGGGTTGTGCTTCAAGTG+TGG + chr5.4:56896983-56897002 MS.gene26119:intron 45.0%
AACGGAGGTTTCGAACAATG+TGG + chr5.4:56894487-56894506 MS.gene26119:CDS 45.0%
AATTCATAACCCTCCCCTCT+TGG - chr5.4:56895295-56895314 None:intergenic 45.0%
ACAACAAAACACCCAGCCAA+AGG + chr5.4:56897304-56897323 MS.gene26119:intron 45.0%
ACATAGATGTGGTCATCGAC+TGG + chr5.4:56898422-56898441 MS.gene26119:CDS 45.0%
ACCATATTGGAGTATGGGCT+AGG - chr5.4:56895837-56895856 None:intergenic 45.0%
ACGGAGGTTTCGAACAATGT+GGG + chr5.4:56894488-56894507 MS.gene26119:CDS 45.0%
AGCTCTTTCCAAGCAAGCAT+TGG + chr5.4:56898199-56898218 MS.gene26119:CDS 45.0%
AGGTAGCCAAGGAGAAACAA+TGG - chr5.4:56895671-56895690 None:intergenic 45.0%
AGTACACCAATCCACGGATA+TGG - chr5.4:56895209-56895228 None:intergenic 45.0%
ATCCAAGCTATTACGACCTG+AGG - chr5.4:56897576-56897595 None:intergenic 45.0%
ATCCCATAAGCTACCTCAAG+GGG - chr5.4:56895805-56895824 None:intergenic 45.0%
CAGCCTCAAGAGATGGTTAT+TGG + chr5.4:56896700-56896719 MS.gene26119:intron 45.0%
CATCTACCATATCCGTGGAT+TGG + chr5.4:56895200-56895219 MS.gene26119:intron 45.0%
CATGATCCAGGACCTAACTT+TGG - chr5.4:56894887-56894906 None:intergenic 45.0%
CTGACCAAACCTTCCTTGAA+TGG + chr5.4:56898134-56898153 MS.gene26119:CDS 45.0%
CTTGTAGGTCTTCAGAATGC+TGG + chr5.4:56894133-56894152 MS.gene26119:CDS 45.0%
GATTCCTCTCTGAGTTGTGT+CGG + chr5.4:56895555-56895574 MS.gene26119:intron 45.0%
GCACAAGATGAACCCGAAAA+TGG + chr5.4:56897262-56897281 MS.gene26119:intron 45.0%
GGGATTCCTTTGCTTGTTCT+TGG + chr5.4:56898155-56898174 MS.gene26119:CDS 45.0%
GGTTCATCTTGTGCTCGATT+TGG - chr5.4:56897256-56897275 None:intergenic 45.0%
GTCACAATACTGAGGATTGC+AGG + chr5.4:56896087-56896106 MS.gene26119:intron 45.0%
GTCCAATACTAGATGTGAGG+GGG + chr5.4:56895914-56895933 MS.gene26119:intron 45.0%
GTTGCTTGTTCTTGTGGCTA+TGG + chr5.4:56894237-56894256 MS.gene26119:intron 45.0%
TACCTCAGGTCGTAATAGCT+TGG + chr5.4:56897571-56897590 MS.gene26119:intron 45.0%
TAGAACCCAAAGTTAGGTCC+TGG + chr5.4:56894878-56894897 MS.gene26119:intron 45.0%
TCGTGGATGCTGATAGAAAC+TGG + chr5.4:56897658-56897677 MS.gene26119:intron 45.0%
TCTCGGCGTTAAGGCTAATA+GGG + chr5.4:56895172-56895191 MS.gene26119:intron 45.0%
TGGTTATTGGGAAACAGTGG+TGG + chr5.4:56896713-56896732 MS.gene26119:intron 45.0%
TGTTAGGACCTAGTAGGAGA+GGG + chr5.4:56895339-56895358 MS.gene26119:intron 45.0%
TTATTGGGAAACAGTGGTGG+TGG + chr5.4:56896716-56896735 MS.gene26119:intron 45.0%
! CATTCAAGGAAGGTTTGGTC+AGG - chr5.4:56898136-56898155 None:intergenic 45.0%
! GACAAGTAGGGTTGATCTGT+TGG + chr5.4:56896029-56896048 MS.gene26119:intron 45.0%
! GACCGAAGAAAAACCGACTT+GGG + chr5.4:56896407-56896426 MS.gene26119:intron 45.0%
! TGCTTTGGTGACTTTGGTCT+TGG - chr5.4:56897388-56897407 None:intergenic 45.0%
! TTCGTAGCCCTTTTAAGCCT+TGG + chr5.4:56895769-56895788 MS.gene26119:intron 45.0%
! TTTGGGATCTTGGTGGTCAA+CGG + chr5.4:56894469-56894488 MS.gene26119:CDS 45.0%
!! AGGAAAGTGGGTTTTACCTG+CGG - chr5.4:56893781-56893800 None:intergenic 45.0%
!! CTATATATTGGTGCCGCGAA+TGG - chr5.4:56897018-56897037 None:intergenic 45.0%
!! GCTTGTTTTCTGCATGATCC+AGG - chr5.4:56894899-56894918 None:intergenic 45.0%
!! GTGGATTGGTGTACTCTTTG+TGG + chr5.4:56895214-56895233 MS.gene26119:intron 45.0%
!!! AGGTAGTTTTGGTACCTTGG+AGG - chr5.4:56896557-56896576 None:intergenic 45.0%
!!! GGTAGTTTTGGTACCTTGGA+GGG - chr5.4:56896556-56896575 None:intergenic 45.0%
!!! GTCTTGGTGTTTTGGGATCT+TGG - chr5.4:56897372-56897391 None:intergenic 45.0%
!!! GTTCCGTCAGACGAGTTTTT+TGG - chr5.4:56896257-56896276 None:intergenic 45.0%
AAGAAGGCGGTGTAGATGGT+AGG - chr5.4:56897520-56897539 None:intergenic 50.0%
AGGAAAGGAGAAAGGGGTGA+TGG - chr5.4:56897833-56897852 None:intergenic 50.0%
ATAACCCTCCCCTCTTGGAT+TGG - chr5.4:56895290-56895309 None:intergenic 50.0%
ATAGGAGAGTCTCGGCGTTA+AGG + chr5.4:56895163-56895182 MS.gene26119:intron 50.0%
CAAAGAAGCCATAGCGTCAC+AGG - chr5.4:56897474-56897493 None:intergenic 50.0%
CAATACTAGATGTGAGGGGG+TGG + chr5.4:56895917-56895936 MS.gene26119:intron 50.0%
CACCCCCTCACATCTAGTAT+TGG - chr5.4:56895919-56895938 None:intergenic 50.0%
CACCCCTTGAGGTAGCTTAT+GGG + chr5.4:56895800-56895819 MS.gene26119:intron 50.0%
CACTATGCAGCCTCAAGAGA+TGG + chr5.4:56896693-56896712 MS.gene26119:intron 50.0%
CCAGTGGAAGTGGTCAAAGA+AGG - chr5.4:56897536-56897555 None:intergenic 50.0%
CCTTCTTTGACCACTTCCAC+TGG + chr5.4:56897533-56897552 MS.gene26119:intron 50.0%
CTACCTCAAGGGGTGAAGAT+TGG - chr5.4:56895795-56895814 None:intergenic 50.0%
CTCAGAGAGGAATCCTACTC+TGG - chr5.4:56895549-56895568 None:intergenic 50.0%
CTGTGACGCTATGGCTTCTT+TGG + chr5.4:56897472-56897491 MS.gene26119:intron 50.0%
GAGATGGAGCTGTCTCTTGT+AGG + chr5.4:56894118-56894137 MS.gene26119:CDS 50.0%
GCCTAGCCCATACTCCAATA+TGG + chr5.4:56895833-56895852 MS.gene26119:intron 50.0%
GCTGTTCCTCCCCTCATATA+TGG - chr5.4:56896363-56896382 None:intergenic 50.0%
GGAAAGGAGAAAGGGGTGAT+GGG - chr5.4:56897832-56897851 None:intergenic 50.0%
GGACCGAAGAAAAACCGACT+TGG + chr5.4:56896406-56896425 MS.gene26119:intron 50.0%
GTAAGTGGCCCGTTAGGATT+AGG + chr5.4:56895410-56895429 MS.gene26119:intron 50.0%
GTCAAAGAAGGCGGTGTAGA+TGG - chr5.4:56897524-56897543 None:intergenic 50.0%
GTCTCGGCGTTAAGGCTAAT+AGG + chr5.4:56895171-56895190 MS.gene26119:intron 50.0%
GTGGAAGTGGTCAAAGAAGG+CGG - chr5.4:56897533-56897552 None:intergenic 50.0%
GTGTTAGGACCTAGTAGGAG+AGG + chr5.4:56895338-56895357 MS.gene26119:intron 50.0%
TCACCCCTTGAGGTAGCTTA+TGG + chr5.4:56895799-56895818 MS.gene26119:intron 50.0%
TGATCCAATCCAAGAGGGGA+GGG + chr5.4:56895283-56895302 MS.gene26119:intron 50.0%
TTGTGTCGGAGCTTTGCTCT+GGG + chr5.4:56895569-56895588 MS.gene26119:intron 50.0%
TTTCTGTTCAGGGCCAGAGT+AGG + chr5.4:56895533-56895552 MS.gene26119:intron 50.0%
!! GGAGCGTCGACAAATACAAG+TGG - chr5.4:56895890-56895909 None:intergenic 50.0%
ACAGACAGGGGGATACAGTG+AGG + chr5.4:56894290-56894309 MS.gene26119:intron 55.0%
AGAAGCCATAGCGTCACAGG+CGG - chr5.4:56897471-56897490 None:intergenic 55.0%
AGCTCCGACACAACTCAGAG+AGG - chr5.4:56895562-56895581 None:intergenic 55.0%
AGCTGGCCATATATGAGGGG+AGG + chr5.4:56896354-56896373 MS.gene26119:intron 55.0%
GTGATCCAATCCAAGAGGGG+AGG + chr5.4:56895282-56895301 MS.gene26119:intron 55.0%
GTTGTGTCGGAGCTTTGCTC+TGG + chr5.4:56895568-56895587 MS.gene26119:intron 55.0%
TGACTCGTGACGTGAGCCTT+TGG - chr5.4:56897323-56897342 None:intergenic 55.0%
TGAGGGGAGGAACAGCTCAT+TGG + chr5.4:56896367-56896386 MS.gene26119:intron 55.0%
TGGCCAATCTTCACCCCTTG+AGG + chr5.4:56895789-56895808 MS.gene26119:intron 55.0%
! CAAGGGGTGAAGATTGGCCA+AGG - chr5.4:56895789-56895808 None:intergenic 55.0%
! CTCTTCTCAATTGGCTCCGC+AGG + chr5.4:56893762-56893781 MS.gene26119:CDS 55.0%
!! GTGTAGATGGTAGGCGTCGA+AGG - chr5.4:56897511-56897530 None:intergenic 55.0%
!! TTGGGAAACAGTGGTGGTGG+AGG + chr5.4:56896719-56896738 MS.gene26119:intron 55.0%
CAGGCGGAGGTCAGAGACAA+AGG - chr5.4:56897455-56897474 None:intergenic 60.0%
CGTGACGTGAGCCTTTGGCT+GGG - chr5.4:56897318-56897337 None:intergenic 60.0%
TCGTGACGTGAGCCTTTGGC+TGG - chr5.4:56897319-56897338 None:intergenic 60.0%
! GGGATCTTGGTGGTCAACGG+AGG + chr5.4:56894472-56894491 MS.gene26119:CDS 60.0%
!! ATGTGGGAGCGCTACTGTCG+CGG + chr5.4:56894504-56894523 MS.gene26119:CDS 60.0%
AGCCATAGCGTCACAGGCGG+AGG - chr5.4:56897468-56897487 None:intergenic 65.0%
GACCTCCGCCTGTGACGCTA+TGG + chr5.4:56897463-56897482 MS.gene26119:intron 65.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 56893746 56898474 56893746 ID=MS.gene26119
chr5.4 mRNA 56893746 56898474 56893746 ID=MS.gene26119.t1;Parent=MS.gene26119
chr5.4 exon 56893746 56893783 56893746 ID=MS.gene26119.t1.exon1;Parent=MS.gene26119.t1
chr5.4 CDS 56893746 56893783 56893746 ID=cds.MS.gene26119.t1;Parent=MS.gene26119.t1
chr5.4 exon 56894102 56894183 56894102 ID=MS.gene26119.t1.exon2;Parent=MS.gene26119.t1
chr5.4 CDS 56894102 56894183 56894102 ID=cds.MS.gene26119.t1;Parent=MS.gene26119.t1
chr5.4 exon 56894294 56894326 56894294 ID=MS.gene26119.t1.exon3;Parent=MS.gene26119.t1
chr5.4 CDS 56894294 56894326 56894294 ID=cds.MS.gene26119.t1;Parent=MS.gene26119.t1
chr5.4 exon 56894420 56894541 56894420 ID=MS.gene26119.t1.exon4;Parent=MS.gene26119.t1
chr5.4 CDS 56894420 56894541 56894420 ID=cds.MS.gene26119.t1;Parent=MS.gene26119.t1
chr5.4 exon 56898070 56898231 56898070 ID=MS.gene26119.t1.exon5;Parent=MS.gene26119.t1
chr5.4 CDS 56898070 56898231 56898070 ID=cds.MS.gene26119.t1;Parent=MS.gene26119.t1
chr5.4 exon 56898357 56898474 56898357 ID=MS.gene26119.t1.exon6;Parent=MS.gene26119.t1
chr5.4 CDS 56898357 56898474 56898357 ID=cds.MS.gene26119.t1;Parent=MS.gene26119.t1
Gene Sequence

>MS.gene26119

ATGGGTCTCTGGGATTCTCTTCTCAATTGGCTCCGCAGGTAAAACCCACTTTCCTTTCTTTATTCTTATTTCTTTGTTATAAAGTTTCAATTTTTATGTTTCTGTATTGAAAAATTCCATTCCAGTTACTATATATCATATGATTGTTTACAAAGTTTAAATATTGATTGATTCATTGAGATTCATATATCCTTGATGTTGTTAAACCTCTAAATTTGTATTAGAGTAAAGATCCAATTTGGTTATTCGCAATTTTGTCGCAGCTCGTGTAGTCTCTTACAGAAAAATAATACCCAAGTAATTTTGTATGAATTTGTGAATTGAATGAATGATTGTGAATTTGTGTGTTTTGGCAGCTTATTTTTTAAACAAGAGATGGAGCTGTCTCTTGTAGGTCTTCAGAATGCTGGAAAAACTTCTCTTGTCAATTCAATTGCTGTGAGTTAATGTCATTGCAAGACTTCTAATTTTAACTCATTATTACTGGTTTTGTTGCTTGTTCTTGTGGCTATGGTTTCATAGTTTGGTCATTGATTTTTGTTTGACAGACAGGGGGATACAGTGAGGATATGATTCCAACTGTAAGTATCTTTACTTTTTTGTTACATTTGAATTCAGAATTTAAGGATTGTTCACGTGCTAATTGAAATGTGAATTTTGCTATTGAACTTTAGGTTGGGTTCAATATGCGAAAAGTGACAAAGGGAAATGTCACAATAAAGCTTTGGGATCTTGGTGGTCAACGGAGGTTTCGAACAATGTGGGAGCGCTACTGTCGCGGTGTCTCTGCTATTGTGTATTGTCTCTTTTCATGTTCTCTCTTACTTACATATGTATACATTGATAGAAATGCATATCTTCCTTTGTCATTTTTTTGAAGGTTGTGTTGGATTACAAATTGTATATAGTTAATGTTTTTTGGGTAGTGTTAACTTATGCCCTTAGGGCACAAGTTAAGAATCTAAAAATGGAATTAAATCATATATTATGTCTTGAAAAGATAAAATTTTAAATATTTAGACATTTGAATGCACAATTTCCAACAAAATGTTTCTATTTTTGGTTTCTTAACTTGTGCCTTGAGGGCACAAGTTAACATTTCGCATGTTTTTTTTATTGTTTATGTTTCTGTTAGAACCCAAAGTTAGGTCCTGGATCATGCAGAAAACAAGCCTAAAATGTGGCTTGTGTACTCTAGGAGAAATAAGAAAATACTAAGGTCAAATTAGTAACATAGAATTTAAATGTTGGGACAGTTATGTAGTACTAGTTGTTTTATGTGCAGTAGGGAAGATATATGATAAGAAAATTACGCCGCAATGATCGAGTTAATATGGTGTTGTTATAAGGAGGACTTGTGTAAGTTTTTGGTTTGCATTCTGTTTTTCTTTTGTGTGAGCGTGATAATTGTTTTCTCATAGGAGAGTCTCGGCGTTAAGGCTAATAGGGAAGTTCATCTACCATATCCGTGGATTGGTGTACTCTTTGTGGAGTTCAATAAAGTTTATTATAAACCCTATAGTTGGTCCAACTTTTGTGATCCAATCCAAGAGGGGAGGGTTATGAATTAGAGAAATTATAGATGATTATTAGTGTTAGGACCTAGTAGGAGAGGGTGTTTTAAGTAATTAGTAAGTAGTTAGTTAGGTTTAAGTAGATTATTAGTAAGTGGCCCGTTAGGATTAGGATTTAATAATAAGAGGCCCATTAGGGTTAAATACTAGAATGTTCTCTTTATTTGTATATAAAGGGGAATTCTTAGGAGTTAAGAGTATGACAGATTGAGTTTTCTGTTCAGGGCCAGAGTAGGATTCCTCTCTGAGTTGTGTCGGAGCTTTGCTCTGGGAGTAGTTAGAGAATCTCTCTGCTACTATTTTACTATTTTCGTTCCTATTAATAAAGCACCCTATTTTCTTTAATCACCATTGTTTCTCCTTGGCTACCTTACTGTTAATTCATTGGTAGGATCCTTTGGTTCCTATCAATTAGGTTCCCACATTAACTTGAAATATTGCCAATTTACTTCGTAGCCCTTTTAAGCCTTGGCCAATCTTCACCCCTTGAGGTAGCTTATGGGATTAAGCTAAGCCTAGCCCATACTCCAATATGGTATCACAACCTATTCTAGATCTAAAATTGGACCACTTGTATTTGTCGACGCTCCATATGTCCAATACTAGATGTGAGGGGGTGGTATTGAGATGACACATCGACTAGAAATATAACTAATGTGACTGAACTAGCTTTTGGGGTTGAGTTAAGCCTAGTCCAAATTCTAAGAATGACAAGTAGGGTTGATCTGTTGGAAGAATTCAAGAGGGCAAACATGGAATGCATATGTGTCACAATACTGAGGATTGCAGGGTTGAATCTGCTTCAGTTAGAGATTCATCCTTTGTTGATAGGTCTCATCAACCAATATCAAGAAAATCACAAGGCGGTTATTGGGATAAGTATAAAATGTTAATTAAAAATGTAGACTTTCCTATGTTTGACAGAACAGTTAGTCCAAAAAACTCGTCTGACGGAACAACACATATCATGGATCACTAGGAATGAAATTTATTTTCAAGTTTTAAACACAACTGAAGAAGTCAAGGTGAGAATTAGCTGGCCATATATGAGGGGAGGAACAGCTCATTGGTTTGATCTTCTCAAAGGGACCGAAGAAAAACCGACTTGGGATAAGTTGAAGTAGACTCTTATAAAACGGTATGGGGGATGGGTACATGAGAATCCCTTTGAAGAATTGTTAGCTTTTCGACTGTTCGGTACTATTGAGCAATATAGAGGCTTTTGTGTTGATTCCCTCCAAGGTACCAAAACTACCTTAACAATACGTGAGTATTTCATGAGTGGTCTTCAGCCATCTTTAAAATGGAAGGTTCACACTCTGCAGCCTCAAAATAGAGTGCAGTTGATTAGAATGGCTTAGATGGAAGGTTCACACTATGCAGCCTCAAGAGATGGTTATTGGGAAACAGTGGTGGTGGAGGCAGCTTGTTAAGTTTTCGGCCTAACCTAAGGTTCAGTTCATCCTAAAATGATTTCGGTTAGTCAATATAATTGGGTCAAAACATGGGTACCATAGATTCAAGTTCTAGCAAGACACGTGATCATGCAAATTGAGGAACAATTAGTGTGGCTTCCAATAAGGTAACTTTATCTTTAGTGGCGTTAACAAGGAAATGAGAAGGGGGCAGACACAGATTTTCTCAATTACACATACGTAGAGCTAAAGGGTTGTGCTTCAAGTGTGGTGAAAAATTCCATTCGCGGCACCAATATATAGACAAACTGTTGATGTTGTTAGTGTTGGAGGAGAATGAATGTTCATAGAGAGTGAACATAGAAGTCGAAAATGTCTCTATCATCATTCATTTAAAGTTTCACTTTTCAATGAATGAGGAAGAGGTGATTGAGTGTATTCCTCATTCTTTCAAACATTAGGGACAGAAATCCAGATGCTCTTTTTTTTTTTTAACGGATAAATATTTTCATTAAAAACCAAATCGAGCACAAGATGAACCCGAAAATGGAGCAAAGTTACAGAACAATACAACAAAACACCCAGCCAAAGGCTCACGTCACGAGTCACTACTAAAAGTAATTGACAAAACAAACCAAGATCCCAAAACACCAAGACCAAAGTCACCAAAGCAAGACAAGAGCCATAACAGACTATGAAAGAACCGAAACGTTAAGGCCTTTGTCTCTGACCTCCGCCTGTGACGCTATGGCTTCTTTGGTTCTCAAATGCAGCCTTCGACGCCTACCATCTACACCGCCTTCTTTGACCACTTCCACTGGTTTCAAGAATTTGGGTACCTCAGGTCGTAATAGCTTGGATCGAACCACTTCCTGATACTTGTTTTTATAACCACTGTTTTTTATTATCAAGATGTTGATTGGTCGTGGATGCTGATAGAAACTGGTTCAAACATAGAAATATAAAGGAAATAACAGACTTTTATTGAACAATTTTGGTTACTGAGGCCAGACTTTAGATTTTACTATAGGAAATCTAGTTTACAGAATTATAAGAGTCTTGGTCTCTTCCTACCATAACCATAAAATAACTATCCCATCACCCCTTTCTCCTTTCCTTTCTCTGTTTATTCATAAAAATAAACAACATACCTTACGTAATAAAAACATAACTGCCAATTGATTTCTGTACTCTCCTCTTGTATTTATCTCTGATAAGAAGTCTTAACACATGCTTCATATTGTGGTGTGTATGTTTGTTCTTTCGAGTAATTAGGAGTTGCATTTCTTGGTGTATATACAGTTGTGTTTGCTTTAATCATGGATGCAATTGCAGGTATGTTGTAGATGCTGCTGATAGAGACAGTGTTCCAATAACTCGAAGTGAATTAAATGAACTCCTGACCAAACCTTCCTTGAATGGGATTCCTTTGCTTGTTCTTGGAAACAAAATTGACAAGTCAGAAGCTCTTTCCAAGCAAGCATTGGTAGATCAACTGTAAGTTCATATAATAATTTCATCCGAAAATCATCATCATTATTGTTTCTATTGTTGCGTGTGTTTAATGAAATATTTCTTAATGCTTTGTGTAACTAATTAAACCTTTGATTGTTCGATTTCAGAGGACTTGAGTCAATTAAAGACAGAGAGGTCTGTTGCTACATGATTTCATGCAAGGATTCTGTAAACATAGATGTGGTCATCGACTGGCTTATCAAACACTCGAAAACTGCGAACTGA

Protein sequence

>MS.gene26119.t1

MGLWDSLLNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIVYVVDAADRDSVPITRSELNELLTKPSLNGIPLLVLGNKIDKSEALSKQALVDQLGLESIKDREVCCYMISCKDSVNIDVVIDWLIKHSKTAN